Multiple sequence alignment - TraesCS6D01G092000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G092000 chr6D 100.000 3299 0 0 1 3299 57481411 57484709 0.000000e+00 6093.0
1 TraesCS6D01G092000 chr6D 85.987 892 58 23 6 867 237741262 237742116 0.000000e+00 893.0
2 TraesCS6D01G092000 chr6D 85.827 889 61 26 9 867 108161032 108160179 0.000000e+00 883.0
3 TraesCS6D01G092000 chr6D 79.211 659 118 12 1667 2309 57514832 57515487 1.090000e-119 440.0
4 TraesCS6D01G092000 chr6D 79.935 618 104 15 992 1596 57514186 57514796 1.410000e-118 436.0
5 TraesCS6D01G092000 chr6D 82.121 481 76 7 1865 2337 57894941 57895419 1.430000e-108 403.0
6 TraesCS6D01G092000 chr6D 82.844 443 60 8 992 1422 57171266 57171704 1.860000e-102 383.0
7 TraesCS6D01G092000 chr6D 85.755 351 44 4 940 1289 57178217 57178562 1.870000e-97 366.0
8 TraesCS6D01G092000 chr6D 76.623 616 130 10 992 1596 57158831 57159443 8.830000e-86 327.0
9 TraesCS6D01G092000 chr6D 86.607 112 12 3 2456 2567 57515659 57515767 1.610000e-23 121.0
10 TraesCS6D01G092000 chr6A 91.570 2076 131 20 936 2999 72480249 72482292 0.000000e+00 2824.0
11 TraesCS6D01G092000 chr6A 77.459 1393 259 44 992 2353 72429424 72430792 0.000000e+00 782.0
12 TraesCS6D01G092000 chr6A 82.158 482 74 9 1865 2337 73064481 73064959 1.430000e-108 403.0
13 TraesCS6D01G092000 chr6A 78.827 614 107 17 1017 1611 73063633 73064242 3.090000e-105 392.0
14 TraesCS6D01G092000 chr6A 81.188 505 66 16 936 1422 71948602 71949095 2.400000e-101 379.0
15 TraesCS6D01G092000 chr6A 85.286 367 46 6 986 1347 72488784 72489147 4.020000e-99 372.0
16 TraesCS6D01G092000 chr6A 83.568 213 24 10 2428 2635 72523904 72524110 4.350000e-44 189.0
17 TraesCS6D01G092000 chr6A 87.097 155 20 0 1131 1285 73510490 73510644 3.380000e-40 176.0
18 TraesCS6D01G092000 chr6A 84.270 178 19 7 2445 2618 72524250 72524422 7.320000e-37 165.0
19 TraesCS6D01G092000 chrUn 96.599 882 15 2 1 867 112648024 112648905 0.000000e+00 1448.0
20 TraesCS6D01G092000 chrUn 84.797 888 69 33 6 867 31387946 31388793 0.000000e+00 832.0
21 TraesCS6D01G092000 chr2D 96.032 882 12 2 1 868 623886785 623885913 0.000000e+00 1413.0
22 TraesCS6D01G092000 chr2D 85.522 891 62 23 6 868 11100521 11101372 0.000000e+00 869.0
23 TraesCS6D01G092000 chr7D 94.898 882 19 3 1 867 473878175 473879045 0.000000e+00 1356.0
24 TraesCS6D01G092000 chr7D 85.577 312 32 8 2993 3299 584847782 584848085 6.870000e-82 315.0
25 TraesCS6D01G092000 chr2A 86.859 799 56 17 99 867 735870915 735870136 0.000000e+00 848.0
26 TraesCS6D01G092000 chr6B 76.818 1609 292 50 992 2552 129447019 129448594 0.000000e+00 830.0
27 TraesCS6D01G092000 chr6B 77.622 1430 251 49 992 2383 129268684 129270082 0.000000e+00 804.0
28 TraesCS6D01G092000 chr6B 82.365 482 73 9 1865 2337 129851279 129851757 3.060000e-110 409.0
29 TraesCS6D01G092000 chr6B 78.548 606 108 17 1020 1611 129850437 129851034 2.400000e-101 379.0
30 TraesCS6D01G092000 chr6B 82.658 444 59 10 992 1422 128016531 128016969 8.640000e-101 377.0
31 TraesCS6D01G092000 chr6B 80.472 466 89 2 1884 2348 128017425 128017889 4.050000e-94 355.0
32 TraesCS6D01G092000 chr6B 94.118 68 2 1 2553 2618 129450805 129450872 5.820000e-18 102.0
33 TraesCS6D01G092000 chr5B 90.049 613 39 15 275 868 425675191 425674582 0.000000e+00 774.0
34 TraesCS6D01G092000 chr5B 86.765 204 13 7 10 213 425675626 425675437 7.170000e-52 215.0
35 TraesCS6D01G092000 chr4A 83.626 855 89 26 6 839 541671197 541672021 0.000000e+00 756.0
36 TraesCS6D01G092000 chr1D 84.928 763 54 20 9 743 396312608 396311879 0.000000e+00 715.0
37 TraesCS6D01G092000 chr3A 94.872 39 2 0 2702 2740 719629422 719629460 9.880000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G092000 chr6D 57481411 57484709 3298 False 6093.000000 6093 100.000000 1 3299 1 chr6D.!!$F4 3298
1 TraesCS6D01G092000 chr6D 237741262 237742116 854 False 893.000000 893 85.987000 6 867 1 chr6D.!!$F6 861
2 TraesCS6D01G092000 chr6D 108160179 108161032 853 True 883.000000 883 85.827000 9 867 1 chr6D.!!$R1 858
3 TraesCS6D01G092000 chr6D 57514186 57515767 1581 False 332.333333 440 81.917667 992 2567 3 chr6D.!!$F7 1575
4 TraesCS6D01G092000 chr6D 57158831 57159443 612 False 327.000000 327 76.623000 992 1596 1 chr6D.!!$F1 604
5 TraesCS6D01G092000 chr6A 72480249 72482292 2043 False 2824.000000 2824 91.570000 936 2999 1 chr6A.!!$F3 2063
6 TraesCS6D01G092000 chr6A 72429424 72430792 1368 False 782.000000 782 77.459000 992 2353 1 chr6A.!!$F2 1361
7 TraesCS6D01G092000 chr6A 73063633 73064959 1326 False 397.500000 403 80.492500 1017 2337 2 chr6A.!!$F7 1320
8 TraesCS6D01G092000 chrUn 112648024 112648905 881 False 1448.000000 1448 96.599000 1 867 1 chrUn.!!$F2 866
9 TraesCS6D01G092000 chrUn 31387946 31388793 847 False 832.000000 832 84.797000 6 867 1 chrUn.!!$F1 861
10 TraesCS6D01G092000 chr2D 623885913 623886785 872 True 1413.000000 1413 96.032000 1 868 1 chr2D.!!$R1 867
11 TraesCS6D01G092000 chr2D 11100521 11101372 851 False 869.000000 869 85.522000 6 868 1 chr2D.!!$F1 862
12 TraesCS6D01G092000 chr7D 473878175 473879045 870 False 1356.000000 1356 94.898000 1 867 1 chr7D.!!$F1 866
13 TraesCS6D01G092000 chr2A 735870136 735870915 779 True 848.000000 848 86.859000 99 867 1 chr2A.!!$R1 768
14 TraesCS6D01G092000 chr6B 129268684 129270082 1398 False 804.000000 804 77.622000 992 2383 1 chr6B.!!$F1 1391
15 TraesCS6D01G092000 chr6B 129447019 129450872 3853 False 466.000000 830 85.468000 992 2618 2 chr6B.!!$F3 1626
16 TraesCS6D01G092000 chr6B 129850437 129851757 1320 False 394.000000 409 80.456500 1020 2337 2 chr6B.!!$F4 1317
17 TraesCS6D01G092000 chr6B 128016531 128017889 1358 False 366.000000 377 81.565000 992 2348 2 chr6B.!!$F2 1356
18 TraesCS6D01G092000 chr5B 425674582 425675626 1044 True 494.500000 774 88.407000 10 868 2 chr5B.!!$R1 858
19 TraesCS6D01G092000 chr4A 541671197 541672021 824 False 756.000000 756 83.626000 6 839 1 chr4A.!!$F1 833
20 TraesCS6D01G092000 chr1D 396311879 396312608 729 True 715.000000 715 84.928000 9 743 1 chr1D.!!$R1 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 1151 0.394625 ACTCGCTAGTCACTCTCCCC 60.395 60.0 0.00 0.0 0.00 4.81 F
1606 1889 0.111061 AGCTGCATCAACCAGTTGGA 59.889 50.0 10.47 0.0 40.78 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 2095 0.654683 GCAGCCATCTGAGCTTTACG 59.345 55.0 0.00 0.0 42.95 3.18 R
3011 5564 0.028770 TGAAAAACGGCGCAGTGAAG 59.971 50.0 15.45 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 215 3.737559 AGTTTATGGCTGGATGGTTGA 57.262 42.857 0.00 0.00 0.00 3.18
232 442 2.030213 GCATCATGCAAGAAGTCGTCTC 59.970 50.000 4.20 0.00 44.26 3.36
868 1102 3.057734 GCACGTGCAAGTCTACTAGTTT 58.942 45.455 34.52 0.00 41.59 2.66
869 1103 3.121445 GCACGTGCAAGTCTACTAGTTTC 59.879 47.826 34.52 0.00 41.59 2.78
870 1104 4.295870 CACGTGCAAGTCTACTAGTTTCA 58.704 43.478 0.82 0.00 0.00 2.69
871 1105 4.383052 CACGTGCAAGTCTACTAGTTTCAG 59.617 45.833 0.82 0.00 0.00 3.02
872 1106 4.037684 ACGTGCAAGTCTACTAGTTTCAGT 59.962 41.667 0.00 0.00 0.00 3.41
873 1107 5.240183 ACGTGCAAGTCTACTAGTTTCAGTA 59.760 40.000 0.00 0.00 0.00 2.74
874 1108 6.147581 CGTGCAAGTCTACTAGTTTCAGTAA 58.852 40.000 0.00 0.00 30.77 2.24
875 1109 6.087820 CGTGCAAGTCTACTAGTTTCAGTAAC 59.912 42.308 0.00 0.00 36.99 2.50
876 1110 6.921857 GTGCAAGTCTACTAGTTTCAGTAACA 59.078 38.462 0.00 0.00 39.30 2.41
877 1111 6.921857 TGCAAGTCTACTAGTTTCAGTAACAC 59.078 38.462 0.00 0.00 39.30 3.32
878 1112 6.087820 GCAAGTCTACTAGTTTCAGTAACACG 59.912 42.308 0.00 0.00 39.30 4.49
879 1113 7.358066 CAAGTCTACTAGTTTCAGTAACACGA 58.642 38.462 0.00 0.00 39.30 4.35
880 1114 7.131498 AGTCTACTAGTTTCAGTAACACGAG 57.869 40.000 0.00 0.00 39.30 4.18
881 1115 6.709846 AGTCTACTAGTTTCAGTAACACGAGT 59.290 38.462 0.00 0.00 39.30 4.18
882 1116 7.228308 AGTCTACTAGTTTCAGTAACACGAGTT 59.772 37.037 0.00 3.19 39.30 3.01
883 1117 7.859875 GTCTACTAGTTTCAGTAACACGAGTTT 59.140 37.037 0.00 0.00 39.30 2.66
884 1118 8.408601 TCTACTAGTTTCAGTAACACGAGTTTT 58.591 33.333 0.00 0.00 39.30 2.43
885 1119 7.460751 ACTAGTTTCAGTAACACGAGTTTTC 57.539 36.000 2.93 0.00 39.30 2.29
886 1120 7.037438 ACTAGTTTCAGTAACACGAGTTTTCA 58.963 34.615 2.93 0.00 39.30 2.69
887 1121 6.730960 AGTTTCAGTAACACGAGTTTTCAA 57.269 33.333 2.93 0.00 39.30 2.69
888 1122 6.772078 AGTTTCAGTAACACGAGTTTTCAAG 58.228 36.000 2.93 0.00 39.30 3.02
889 1123 4.789095 TCAGTAACACGAGTTTTCAAGC 57.211 40.909 2.93 0.00 39.15 4.01
890 1124 4.185394 TCAGTAACACGAGTTTTCAAGCA 58.815 39.130 2.93 0.00 39.15 3.91
891 1125 4.270084 TCAGTAACACGAGTTTTCAAGCAG 59.730 41.667 2.93 0.00 39.15 4.24
892 1126 2.475200 AACACGAGTTTTCAAGCAGC 57.525 45.000 0.00 0.00 33.11 5.25
893 1127 1.378531 ACACGAGTTTTCAAGCAGCA 58.621 45.000 0.00 0.00 0.00 4.41
894 1128 1.064060 ACACGAGTTTTCAAGCAGCAC 59.936 47.619 0.00 0.00 0.00 4.40
895 1129 0.663153 ACGAGTTTTCAAGCAGCACC 59.337 50.000 0.00 0.00 0.00 5.01
896 1130 0.662619 CGAGTTTTCAAGCAGCACCA 59.337 50.000 0.00 0.00 0.00 4.17
897 1131 1.597937 CGAGTTTTCAAGCAGCACCAC 60.598 52.381 0.00 0.00 0.00 4.16
898 1132 1.405105 GAGTTTTCAAGCAGCACCACA 59.595 47.619 0.00 0.00 0.00 4.17
899 1133 1.134946 AGTTTTCAAGCAGCACCACAC 59.865 47.619 0.00 0.00 0.00 3.82
900 1134 1.134946 GTTTTCAAGCAGCACCACACT 59.865 47.619 0.00 0.00 0.00 3.55
901 1135 1.024271 TTTCAAGCAGCACCACACTC 58.976 50.000 0.00 0.00 0.00 3.51
902 1136 1.159713 TTCAAGCAGCACCACACTCG 61.160 55.000 0.00 0.00 0.00 4.18
903 1137 2.974698 AAGCAGCACCACACTCGC 60.975 61.111 0.00 0.00 0.00 5.03
904 1138 3.466791 AAGCAGCACCACACTCGCT 62.467 57.895 0.00 0.00 36.10 4.93
905 1139 2.048222 GCAGCACCACACTCGCTA 60.048 61.111 0.00 0.00 33.82 4.26
906 1140 2.097038 GCAGCACCACACTCGCTAG 61.097 63.158 0.00 0.00 33.82 3.42
907 1141 1.290324 CAGCACCACACTCGCTAGT 59.710 57.895 0.00 0.00 33.82 2.57
908 1142 0.734253 CAGCACCACACTCGCTAGTC 60.734 60.000 0.00 0.00 33.82 2.59
909 1143 1.179174 AGCACCACACTCGCTAGTCA 61.179 55.000 0.00 0.00 33.25 3.41
910 1144 1.009389 GCACCACACTCGCTAGTCAC 61.009 60.000 0.00 0.00 31.97 3.67
911 1145 0.598562 CACCACACTCGCTAGTCACT 59.401 55.000 0.00 0.00 31.97 3.41
912 1146 0.882474 ACCACACTCGCTAGTCACTC 59.118 55.000 0.00 0.00 31.97 3.51
913 1147 1.169577 CCACACTCGCTAGTCACTCT 58.830 55.000 0.00 0.00 31.97 3.24
914 1148 1.131504 CCACACTCGCTAGTCACTCTC 59.868 57.143 0.00 0.00 31.97 3.20
915 1149 1.131504 CACACTCGCTAGTCACTCTCC 59.868 57.143 0.00 0.00 31.97 3.71
916 1150 0.736053 CACTCGCTAGTCACTCTCCC 59.264 60.000 0.00 0.00 31.97 4.30
917 1151 0.394625 ACTCGCTAGTCACTCTCCCC 60.395 60.000 0.00 0.00 0.00 4.81
918 1152 1.076923 TCGCTAGTCACTCTCCCCC 60.077 63.158 0.00 0.00 0.00 5.40
1188 1430 1.078426 CCTGGGGTTCGTGGATGAC 60.078 63.158 0.00 0.00 0.00 3.06
1271 1516 0.247814 GACGCTGCCGATTTCACATG 60.248 55.000 0.00 0.00 38.29 3.21
1306 1571 3.953775 CCAGCGAGGGGTTGTGGT 61.954 66.667 0.00 0.00 0.00 4.16
1357 1622 2.437085 TCTCGTGGAGATCAGCCTTA 57.563 50.000 0.00 0.00 33.35 2.69
1367 1641 2.101582 AGATCAGCCTTAGTAGCAACGG 59.898 50.000 0.00 0.00 0.00 4.44
1443 1720 1.123928 GGGACCTGACATCCGAGAAT 58.876 55.000 0.00 0.00 37.08 2.40
1488 1771 2.126228 CTCGTGCCCGTTAGCGAA 60.126 61.111 0.00 0.00 41.33 4.70
1584 1867 3.147553 TCCATCACCGAAAAATGGTCA 57.852 42.857 0.00 0.00 40.69 4.02
1596 1879 3.354948 AAATGGTCAGTAGCTGCATCA 57.645 42.857 4.12 0.00 0.00 3.07
1597 1880 3.354948 AATGGTCAGTAGCTGCATCAA 57.645 42.857 4.12 0.00 0.00 2.57
1598 1881 2.099141 TGGTCAGTAGCTGCATCAAC 57.901 50.000 4.12 0.00 0.00 3.18
1599 1882 1.339055 TGGTCAGTAGCTGCATCAACC 60.339 52.381 4.12 6.31 0.00 3.77
1601 1884 2.005451 GTCAGTAGCTGCATCAACCAG 58.995 52.381 4.12 0.00 0.00 4.00
1602 1885 1.625315 TCAGTAGCTGCATCAACCAGT 59.375 47.619 4.12 0.00 32.93 4.00
1604 1887 2.161012 CAGTAGCTGCATCAACCAGTTG 59.839 50.000 4.12 4.09 41.71 3.16
1605 1888 1.470098 GTAGCTGCATCAACCAGTTGG 59.530 52.381 10.47 0.00 40.78 3.77
1606 1889 0.111061 AGCTGCATCAACCAGTTGGA 59.889 50.000 10.47 0.00 40.78 3.53
1607 1890 0.524862 GCTGCATCAACCAGTTGGAG 59.475 55.000 10.47 5.02 40.78 3.86
1608 1891 0.524862 CTGCATCAACCAGTTGGAGC 59.475 55.000 10.47 13.83 40.78 4.70
1609 1892 0.111061 TGCATCAACCAGTTGGAGCT 59.889 50.000 20.56 0.00 40.78 4.09
1611 1894 1.883638 GCATCAACCAGTTGGAGCTCA 60.884 52.381 17.19 0.00 40.78 4.26
1612 1895 2.719739 CATCAACCAGTTGGAGCTCAT 58.280 47.619 17.19 0.00 40.78 2.90
1613 1896 2.479566 TCAACCAGTTGGAGCTCATC 57.520 50.000 17.19 5.01 40.78 2.92
1696 1994 0.736325 CGGCCTGTCCTGTTTCGTAG 60.736 60.000 0.00 0.00 0.00 3.51
1789 2090 1.267806 CTGTCAACAATCACACTGGCC 59.732 52.381 0.00 0.00 0.00 5.36
1794 2095 0.823356 ACAATCACACTGGCCACCAC 60.823 55.000 0.00 0.00 0.00 4.16
1862 2163 0.675633 AACAACAGGCAATGCAGACC 59.324 50.000 7.79 0.00 0.00 3.85
1933 2237 2.489722 GCCATTGAGGTGTTTTCTCTCC 59.510 50.000 0.00 0.00 40.61 3.71
1942 2246 6.213397 TGAGGTGTTTTCTCTCCTTGATGATA 59.787 38.462 0.00 0.00 32.78 2.15
2013 2317 3.091545 TGGTGAATCTTCCAAGGAATGC 58.908 45.455 1.35 0.00 33.28 3.56
2140 2444 2.738587 TAGTAGAGGCTCAGGAGTGG 57.261 55.000 18.26 0.00 0.00 4.00
2313 2617 9.915629 CCAAGTATATGAAGTGGTAAGTCTATC 57.084 37.037 0.00 0.00 0.00 2.08
2386 2712 4.389374 ACCGTTTTATGCTATCATGGGAG 58.611 43.478 0.00 0.00 34.22 4.30
2412 2751 6.546428 TTGTGAACCTGGAAATTTGGTTTA 57.454 33.333 11.52 6.19 43.28 2.01
2432 2771 9.974980 TGGTTTAATTTGTTTCTTTATCCTGTC 57.025 29.630 0.00 0.00 0.00 3.51
2433 2772 9.974980 GGTTTAATTTGTTTCTTTATCCTGTCA 57.025 29.630 0.00 0.00 0.00 3.58
2443 2782 9.528018 GTTTCTTTATCCTGTCAAACAATTTCA 57.472 29.630 0.00 0.00 0.00 2.69
2494 2834 8.252417 CACAATGTCATTTCATATCAGGGAAAA 58.748 33.333 0.00 0.00 36.67 2.29
2501 2842 9.342308 TCATTTCATATCAGGGAAAACATCTAC 57.658 33.333 0.00 0.00 36.67 2.59
2610 5163 7.898014 TTCACATCTTATCTCTGCTACCTTA 57.102 36.000 0.00 0.00 0.00 2.69
2622 5175 9.653516 ATCTCTGCTACCTTATATGTATGCTAT 57.346 33.333 0.00 0.00 0.00 2.97
2657 5210 7.779326 TGAAACAAAATATGAGATGGCTATGGA 59.221 33.333 0.00 0.00 0.00 3.41
2665 5218 3.117888 TGAGATGGCTATGGAACCCTTTC 60.118 47.826 0.00 0.00 0.00 2.62
2685 5238 3.646787 AAGCATGACTGAGCAGCTT 57.353 47.368 0.00 0.00 40.41 3.74
2735 5288 3.819188 CCTCTCAAATGCGAGGGC 58.181 61.111 10.90 0.00 41.96 5.19
2794 5347 9.220767 ACTTAACAAATAGGAGTGTGAGATTTC 57.779 33.333 0.00 0.00 0.00 2.17
2797 5350 7.856145 ACAAATAGGAGTGTGAGATTTCATC 57.144 36.000 0.00 0.00 35.39 2.92
2802 5355 8.718158 ATAGGAGTGTGAGATTTCATCTATGA 57.282 34.615 0.00 0.00 40.38 2.15
2806 5359 8.557864 GGAGTGTGAGATTTCATCTATGATTTG 58.442 37.037 0.00 0.00 40.38 2.32
2851 5404 7.776969 TGATACGAGATAATACCACCCTATACC 59.223 40.741 0.00 0.00 0.00 2.73
2852 5405 6.150034 ACGAGATAATACCACCCTATACCT 57.850 41.667 0.00 0.00 0.00 3.08
2853 5406 7.276088 ACGAGATAATACCACCCTATACCTA 57.724 40.000 0.00 0.00 0.00 3.08
2854 5407 7.880623 ACGAGATAATACCACCCTATACCTAT 58.119 38.462 0.00 0.00 0.00 2.57
2858 5411 8.517896 AGATAATACCACCCTATACCTATACCC 58.482 40.741 0.00 0.00 0.00 3.69
2859 5412 6.503530 AATACCACCCTATACCTATACCCA 57.496 41.667 0.00 0.00 0.00 4.51
2860 5413 4.137750 ACCACCCTATACCTATACCCAC 57.862 50.000 0.00 0.00 0.00 4.61
2861 5414 3.181403 ACCACCCTATACCTATACCCACC 60.181 52.174 0.00 0.00 0.00 4.61
2862 5415 3.094572 CACCCTATACCTATACCCACCG 58.905 54.545 0.00 0.00 0.00 4.94
2874 5427 7.120716 ACCTATACCCACCGAAAAATATTGTT 58.879 34.615 0.00 0.00 0.00 2.83
2909 5462 9.578576 AATATCATAGGTGCATGTAACATCTTT 57.421 29.630 0.45 0.00 29.42 2.52
2990 5543 3.372060 ACATATGTGTCGCTCGTACATG 58.628 45.455 7.78 0.00 36.52 3.21
2994 5547 2.587956 TGTGTCGCTCGTACATGTTAC 58.412 47.619 2.30 0.00 0.00 2.50
2999 5552 4.392754 TGTCGCTCGTACATGTTACTAGAA 59.607 41.667 2.30 0.00 0.00 2.10
3000 5553 4.962751 GTCGCTCGTACATGTTACTAGAAG 59.037 45.833 2.30 1.39 0.00 2.85
3001 5554 4.034858 TCGCTCGTACATGTTACTAGAAGG 59.965 45.833 2.30 0.00 0.00 3.46
3002 5555 4.201891 CGCTCGTACATGTTACTAGAAGGT 60.202 45.833 2.30 0.00 0.00 3.50
3003 5556 5.035443 GCTCGTACATGTTACTAGAAGGTG 58.965 45.833 2.30 0.00 0.00 4.00
3004 5557 5.392811 GCTCGTACATGTTACTAGAAGGTGT 60.393 44.000 2.30 0.00 0.00 4.16
3005 5558 6.183360 GCTCGTACATGTTACTAGAAGGTGTA 60.183 42.308 2.30 0.00 0.00 2.90
3006 5559 7.627088 GCTCGTACATGTTACTAGAAGGTGTAA 60.627 40.741 2.30 0.00 0.00 2.41
3007 5560 8.284945 TCGTACATGTTACTAGAAGGTGTAAT 57.715 34.615 2.30 0.00 32.32 1.89
3008 5561 8.186163 TCGTACATGTTACTAGAAGGTGTAATG 58.814 37.037 2.30 0.00 32.32 1.90
3009 5562 7.043590 CGTACATGTTACTAGAAGGTGTAATGC 60.044 40.741 2.30 0.00 32.32 3.56
3010 5563 5.810587 ACATGTTACTAGAAGGTGTAATGCG 59.189 40.000 0.00 0.00 32.32 4.73
3011 5564 4.178540 TGTTACTAGAAGGTGTAATGCGC 58.821 43.478 0.00 0.00 32.32 6.09
3012 5565 4.081862 TGTTACTAGAAGGTGTAATGCGCT 60.082 41.667 9.73 0.00 32.32 5.92
3013 5566 3.611766 ACTAGAAGGTGTAATGCGCTT 57.388 42.857 9.73 0.00 0.00 4.68
3014 5567 3.522553 ACTAGAAGGTGTAATGCGCTTC 58.477 45.455 9.73 0.67 0.00 3.86
3015 5568 2.472695 AGAAGGTGTAATGCGCTTCA 57.527 45.000 9.73 0.00 0.00 3.02
3016 5569 2.076863 AGAAGGTGTAATGCGCTTCAC 58.923 47.619 9.73 12.05 0.00 3.18
3017 5570 2.076863 GAAGGTGTAATGCGCTTCACT 58.923 47.619 9.73 0.00 0.00 3.41
3018 5571 1.442769 AGGTGTAATGCGCTTCACTG 58.557 50.000 9.73 0.00 0.00 3.66
3019 5572 0.179189 GGTGTAATGCGCTTCACTGC 60.179 55.000 9.73 0.00 0.00 4.40
3027 5580 2.331451 GCTTCACTGCGCCGTTTT 59.669 55.556 4.18 0.00 0.00 2.43
3028 5581 1.299089 GCTTCACTGCGCCGTTTTT 60.299 52.632 4.18 0.00 0.00 1.94
3029 5582 1.268778 GCTTCACTGCGCCGTTTTTC 61.269 55.000 4.18 0.00 0.00 2.29
3030 5583 0.028770 CTTCACTGCGCCGTTTTTCA 59.971 50.000 4.18 0.00 0.00 2.69
3031 5584 0.248296 TTCACTGCGCCGTTTTTCAC 60.248 50.000 4.18 0.00 0.00 3.18
3032 5585 1.657181 CACTGCGCCGTTTTTCACC 60.657 57.895 4.18 0.00 0.00 4.02
3033 5586 2.426752 CTGCGCCGTTTTTCACCG 60.427 61.111 4.18 0.00 0.00 4.94
3034 5587 3.175976 CTGCGCCGTTTTTCACCGT 62.176 57.895 4.18 0.00 0.00 4.83
3035 5588 2.724358 GCGCCGTTTTTCACCGTG 60.724 61.111 0.00 0.00 0.00 4.94
3036 5589 3.015677 CGCCGTTTTTCACCGTGA 58.984 55.556 0.00 0.00 0.00 4.35
3037 5590 1.572447 CGCCGTTTTTCACCGTGAT 59.428 52.632 1.09 0.00 0.00 3.06
3038 5591 0.724453 CGCCGTTTTTCACCGTGATG 60.724 55.000 1.09 0.00 0.00 3.07
3039 5592 0.589223 GCCGTTTTTCACCGTGATGA 59.411 50.000 1.09 0.00 0.00 2.92
3040 5593 1.199097 GCCGTTTTTCACCGTGATGAT 59.801 47.619 1.09 0.00 0.00 2.45
3041 5594 2.351350 GCCGTTTTTCACCGTGATGATT 60.351 45.455 1.09 0.00 0.00 2.57
3042 5595 3.488489 CCGTTTTTCACCGTGATGATTC 58.512 45.455 1.09 0.00 0.00 2.52
3043 5596 3.488489 CGTTTTTCACCGTGATGATTCC 58.512 45.455 1.09 0.00 0.00 3.01
3044 5597 3.669557 CGTTTTTCACCGTGATGATTCCC 60.670 47.826 1.09 0.00 0.00 3.97
3045 5598 2.869101 TTTCACCGTGATGATTCCCA 57.131 45.000 1.09 0.00 0.00 4.37
3046 5599 2.401583 TTCACCGTGATGATTCCCAG 57.598 50.000 1.09 0.00 0.00 4.45
3047 5600 1.567357 TCACCGTGATGATTCCCAGA 58.433 50.000 0.00 0.00 0.00 3.86
3048 5601 1.482182 TCACCGTGATGATTCCCAGAG 59.518 52.381 0.00 0.00 0.00 3.35
3049 5602 0.833287 ACCGTGATGATTCCCAGAGG 59.167 55.000 0.00 0.00 0.00 3.69
3050 5603 0.533755 CCGTGATGATTCCCAGAGGC 60.534 60.000 0.00 0.00 0.00 4.70
3051 5604 0.178767 CGTGATGATTCCCAGAGGCA 59.821 55.000 0.00 0.00 0.00 4.75
3052 5605 1.202734 CGTGATGATTCCCAGAGGCAT 60.203 52.381 0.00 0.00 0.00 4.40
3053 5606 2.228059 GTGATGATTCCCAGAGGCATG 58.772 52.381 0.00 0.00 0.00 4.06
3054 5607 1.848388 TGATGATTCCCAGAGGCATGT 59.152 47.619 0.00 0.00 0.00 3.21
3055 5608 2.242965 TGATGATTCCCAGAGGCATGTT 59.757 45.455 0.00 0.00 0.00 2.71
3056 5609 2.905415 TGATTCCCAGAGGCATGTTT 57.095 45.000 0.00 0.00 0.00 2.83
3057 5610 4.079844 TGATGATTCCCAGAGGCATGTTTA 60.080 41.667 0.00 0.00 0.00 2.01
3058 5611 4.314522 TGATTCCCAGAGGCATGTTTAA 57.685 40.909 0.00 0.00 0.00 1.52
3059 5612 4.870636 TGATTCCCAGAGGCATGTTTAAT 58.129 39.130 0.00 0.00 0.00 1.40
3060 5613 5.271598 TGATTCCCAGAGGCATGTTTAATT 58.728 37.500 0.00 0.00 0.00 1.40
3061 5614 5.721000 TGATTCCCAGAGGCATGTTTAATTT 59.279 36.000 0.00 0.00 0.00 1.82
3062 5615 5.404466 TTCCCAGAGGCATGTTTAATTTG 57.596 39.130 0.00 0.00 0.00 2.32
3063 5616 3.768757 TCCCAGAGGCATGTTTAATTTGG 59.231 43.478 0.00 0.00 0.00 3.28
3064 5617 3.768757 CCCAGAGGCATGTTTAATTTGGA 59.231 43.478 0.00 0.00 0.00 3.53
3065 5618 4.222588 CCCAGAGGCATGTTTAATTTGGAA 59.777 41.667 0.00 0.00 0.00 3.53
3066 5619 5.170748 CCAGAGGCATGTTTAATTTGGAAC 58.829 41.667 0.00 0.00 0.00 3.62
3067 5620 4.858692 CAGAGGCATGTTTAATTTGGAACG 59.141 41.667 0.00 0.00 0.00 3.95
3068 5621 3.584834 AGGCATGTTTAATTTGGAACGC 58.415 40.909 0.00 0.00 0.00 4.84
3069 5622 3.258123 AGGCATGTTTAATTTGGAACGCT 59.742 39.130 0.00 0.00 0.00 5.07
3070 5623 4.461081 AGGCATGTTTAATTTGGAACGCTA 59.539 37.500 0.00 0.00 0.00 4.26
3071 5624 5.047660 AGGCATGTTTAATTTGGAACGCTAA 60.048 36.000 0.00 0.00 0.00 3.09
3072 5625 5.061684 GGCATGTTTAATTTGGAACGCTAAC 59.938 40.000 0.00 0.00 0.00 2.34
3073 5626 5.631512 GCATGTTTAATTTGGAACGCTAACA 59.368 36.000 0.00 0.00 0.00 2.41
3074 5627 6.144724 GCATGTTTAATTTGGAACGCTAACAA 59.855 34.615 0.00 0.00 0.00 2.83
3075 5628 7.619161 GCATGTTTAATTTGGAACGCTAACAAG 60.619 37.037 0.00 0.00 0.00 3.16
3076 5629 6.797454 TGTTTAATTTGGAACGCTAACAAGT 58.203 32.000 0.00 0.00 0.00 3.16
3077 5630 7.928103 TGTTTAATTTGGAACGCTAACAAGTA 58.072 30.769 0.00 0.00 0.00 2.24
3078 5631 8.404000 TGTTTAATTTGGAACGCTAACAAGTAA 58.596 29.630 0.00 0.00 0.00 2.24
3079 5632 8.684655 GTTTAATTTGGAACGCTAACAAGTAAC 58.315 33.333 0.00 0.00 0.00 2.50
3080 5633 6.380095 AATTTGGAACGCTAACAAGTAACA 57.620 33.333 0.00 0.00 0.00 2.41
3081 5634 5.814764 TTTGGAACGCTAACAAGTAACAA 57.185 34.783 0.00 0.00 0.00 2.83
3082 5635 4.799419 TGGAACGCTAACAAGTAACAAC 57.201 40.909 0.00 0.00 0.00 3.32
3083 5636 3.560896 TGGAACGCTAACAAGTAACAACC 59.439 43.478 0.00 0.00 0.00 3.77
3084 5637 3.560896 GGAACGCTAACAAGTAACAACCA 59.439 43.478 0.00 0.00 0.00 3.67
3085 5638 4.521010 GAACGCTAACAAGTAACAACCAC 58.479 43.478 0.00 0.00 0.00 4.16
3086 5639 3.533547 ACGCTAACAAGTAACAACCACA 58.466 40.909 0.00 0.00 0.00 4.17
3087 5640 3.310501 ACGCTAACAAGTAACAACCACAC 59.689 43.478 0.00 0.00 0.00 3.82
3088 5641 3.303526 CGCTAACAAGTAACAACCACACC 60.304 47.826 0.00 0.00 0.00 4.16
3089 5642 3.004002 GCTAACAAGTAACAACCACACCC 59.996 47.826 0.00 0.00 0.00 4.61
3090 5643 2.810870 ACAAGTAACAACCACACCCA 57.189 45.000 0.00 0.00 0.00 4.51
3091 5644 2.650322 ACAAGTAACAACCACACCCAG 58.350 47.619 0.00 0.00 0.00 4.45
3092 5645 2.025699 ACAAGTAACAACCACACCCAGT 60.026 45.455 0.00 0.00 0.00 4.00
3093 5646 3.200385 ACAAGTAACAACCACACCCAGTA 59.800 43.478 0.00 0.00 0.00 2.74
3094 5647 4.141344 ACAAGTAACAACCACACCCAGTAT 60.141 41.667 0.00 0.00 0.00 2.12
3095 5648 4.015872 AGTAACAACCACACCCAGTATG 57.984 45.455 0.00 0.00 0.00 2.39
3096 5649 3.649023 AGTAACAACCACACCCAGTATGA 59.351 43.478 0.00 0.00 39.69 2.15
3097 5650 3.586470 AACAACCACACCCAGTATGAA 57.414 42.857 0.00 0.00 39.69 2.57
3098 5651 3.806949 ACAACCACACCCAGTATGAAT 57.193 42.857 0.00 0.00 39.69 2.57
3099 5652 4.919774 ACAACCACACCCAGTATGAATA 57.080 40.909 0.00 0.00 39.69 1.75
3100 5653 5.450818 ACAACCACACCCAGTATGAATAT 57.549 39.130 0.00 0.00 39.69 1.28
3101 5654 5.437060 ACAACCACACCCAGTATGAATATC 58.563 41.667 0.00 0.00 39.69 1.63
3102 5655 5.191722 ACAACCACACCCAGTATGAATATCT 59.808 40.000 0.00 0.00 39.69 1.98
3103 5656 5.552870 ACCACACCCAGTATGAATATCTC 57.447 43.478 0.00 0.00 39.69 2.75
3104 5657 4.968719 ACCACACCCAGTATGAATATCTCA 59.031 41.667 0.00 0.00 39.69 3.27
3105 5658 5.608437 ACCACACCCAGTATGAATATCTCAT 59.392 40.000 5.92 5.92 46.86 2.90
3106 5659 6.787458 ACCACACCCAGTATGAATATCTCATA 59.213 38.462 4.47 4.47 43.32 2.15
3107 5660 7.292356 ACCACACCCAGTATGAATATCTCATAA 59.708 37.037 8.33 0.00 46.37 1.90
3108 5661 7.821359 CCACACCCAGTATGAATATCTCATAAG 59.179 40.741 8.33 5.89 46.37 1.73
3109 5662 8.370940 CACACCCAGTATGAATATCTCATAAGT 58.629 37.037 8.33 4.01 46.37 2.24
3110 5663 8.370940 ACACCCAGTATGAATATCTCATAAGTG 58.629 37.037 8.33 12.74 46.37 3.16
3111 5664 7.332926 CACCCAGTATGAATATCTCATAAGTGC 59.667 40.741 8.33 0.00 46.37 4.40
3112 5665 7.016563 ACCCAGTATGAATATCTCATAAGTGCA 59.983 37.037 8.33 0.00 46.37 4.57
3113 5666 8.045507 CCCAGTATGAATATCTCATAAGTGCAT 58.954 37.037 0.00 0.00 46.37 3.96
3114 5667 9.445878 CCAGTATGAATATCTCATAAGTGCATT 57.554 33.333 0.00 0.00 46.37 3.56
3119 5672 9.783081 ATGAATATCTCATAAGTGCATTACACA 57.217 29.630 0.00 0.00 46.59 3.72
3133 5686 7.936496 TGCATTACACAATTTTGGATAGAGA 57.064 32.000 0.00 0.00 0.00 3.10
3134 5687 7.988737 TGCATTACACAATTTTGGATAGAGAG 58.011 34.615 0.00 0.00 0.00 3.20
3135 5688 7.611467 TGCATTACACAATTTTGGATAGAGAGT 59.389 33.333 0.00 0.00 0.00 3.24
3136 5689 9.109393 GCATTACACAATTTTGGATAGAGAGTA 57.891 33.333 0.00 0.00 0.00 2.59
3140 5693 8.553459 ACACAATTTTGGATAGAGAGTACAAG 57.447 34.615 0.00 0.00 0.00 3.16
3141 5694 8.157476 ACACAATTTTGGATAGAGAGTACAAGT 58.843 33.333 0.00 0.00 0.00 3.16
3142 5695 9.003658 CACAATTTTGGATAGAGAGTACAAGTT 57.996 33.333 0.00 0.00 0.00 2.66
3143 5696 9.574516 ACAATTTTGGATAGAGAGTACAAGTTT 57.425 29.630 0.00 0.00 0.00 2.66
3150 5703 8.964772 TGGATAGAGAGTACAAGTTTACTTACC 58.035 37.037 0.00 0.00 32.17 2.85
3151 5704 8.127954 GGATAGAGAGTACAAGTTTACTTACCG 58.872 40.741 0.00 0.00 32.17 4.02
3152 5705 5.707931 AGAGAGTACAAGTTTACTTACCGC 58.292 41.667 0.00 0.00 32.17 5.68
3153 5706 5.242393 AGAGAGTACAAGTTTACTTACCGCA 59.758 40.000 0.00 0.00 32.17 5.69
3154 5707 6.034161 AGAGTACAAGTTTACTTACCGCAT 57.966 37.500 0.00 0.00 32.17 4.73
3155 5708 6.461640 AGAGTACAAGTTTACTTACCGCATT 58.538 36.000 0.00 0.00 32.17 3.56
3156 5709 6.367969 AGAGTACAAGTTTACTTACCGCATTG 59.632 38.462 0.00 0.00 32.17 2.82
3157 5710 4.155310 ACAAGTTTACTTACCGCATTGC 57.845 40.909 0.00 0.00 34.28 3.56
3158 5711 3.566322 ACAAGTTTACTTACCGCATTGCA 59.434 39.130 9.69 0.00 34.28 4.08
3159 5712 4.036971 ACAAGTTTACTTACCGCATTGCAA 59.963 37.500 9.69 0.00 34.28 4.08
3160 5713 4.419522 AGTTTACTTACCGCATTGCAAG 57.580 40.909 9.69 7.49 0.00 4.01
3161 5714 2.911819 TTACTTACCGCATTGCAAGC 57.088 45.000 9.69 8.00 0.00 4.01
3162 5715 2.107950 TACTTACCGCATTGCAAGCT 57.892 45.000 9.69 0.00 0.00 3.74
3163 5716 0.523072 ACTTACCGCATTGCAAGCTG 59.477 50.000 9.69 7.89 0.00 4.24
3164 5717 0.804364 CTTACCGCATTGCAAGCTGA 59.196 50.000 9.69 0.00 0.00 4.26
3165 5718 1.199789 CTTACCGCATTGCAAGCTGAA 59.800 47.619 9.69 2.91 0.00 3.02
3166 5719 0.804364 TACCGCATTGCAAGCTGAAG 59.196 50.000 9.69 0.00 0.00 3.02
3167 5720 1.804326 CCGCATTGCAAGCTGAAGC 60.804 57.895 9.69 0.00 42.49 3.86
3177 5730 3.972227 GCTGAAGCTTTGCCTCGA 58.028 55.556 0.00 0.00 38.21 4.04
3178 5731 2.247790 GCTGAAGCTTTGCCTCGAA 58.752 52.632 0.00 0.00 38.21 3.71
3179 5732 0.110010 GCTGAAGCTTTGCCTCGAAC 60.110 55.000 0.00 0.00 38.21 3.95
3180 5733 1.229428 CTGAAGCTTTGCCTCGAACA 58.771 50.000 0.00 0.00 0.00 3.18
3181 5734 1.808945 CTGAAGCTTTGCCTCGAACAT 59.191 47.619 0.00 0.00 0.00 2.71
3182 5735 2.227388 CTGAAGCTTTGCCTCGAACATT 59.773 45.455 0.00 0.00 0.00 2.71
3183 5736 2.030893 TGAAGCTTTGCCTCGAACATTG 60.031 45.455 0.00 0.00 0.00 2.82
3184 5737 1.896220 AGCTTTGCCTCGAACATTGA 58.104 45.000 0.00 0.00 0.00 2.57
3185 5738 2.440409 AGCTTTGCCTCGAACATTGAT 58.560 42.857 0.00 0.00 0.00 2.57
3186 5739 2.421424 AGCTTTGCCTCGAACATTGATC 59.579 45.455 0.00 0.00 0.00 2.92
3187 5740 2.162208 GCTTTGCCTCGAACATTGATCA 59.838 45.455 0.00 0.00 0.00 2.92
3188 5741 3.181493 GCTTTGCCTCGAACATTGATCAT 60.181 43.478 0.00 0.00 0.00 2.45
3189 5742 4.348656 CTTTGCCTCGAACATTGATCATG 58.651 43.478 0.00 0.00 39.07 3.07
3191 5744 4.135747 TGCCTCGAACATTGATCATGTA 57.864 40.909 0.00 0.00 46.23 2.29
3192 5745 4.707105 TGCCTCGAACATTGATCATGTAT 58.293 39.130 0.00 0.00 46.23 2.29
3193 5746 5.852827 TGCCTCGAACATTGATCATGTATA 58.147 37.500 0.00 0.00 46.23 1.47
3194 5747 6.466812 TGCCTCGAACATTGATCATGTATAT 58.533 36.000 0.00 0.00 46.23 0.86
3195 5748 7.610865 TGCCTCGAACATTGATCATGTATATA 58.389 34.615 0.00 0.00 46.23 0.86
3196 5749 8.260114 TGCCTCGAACATTGATCATGTATATAT 58.740 33.333 0.00 0.00 46.23 0.86
3197 5750 8.759641 GCCTCGAACATTGATCATGTATATATC 58.240 37.037 0.00 0.00 46.23 1.63
3198 5751 9.254133 CCTCGAACATTGATCATGTATATATCC 57.746 37.037 0.00 0.00 46.23 2.59
3200 5753 9.807649 TCGAACATTGATCATGTATATATCCTG 57.192 33.333 0.00 0.00 46.23 3.86
3201 5754 9.591792 CGAACATTGATCATGTATATATCCTGT 57.408 33.333 0.00 0.00 46.23 4.00
3204 5757 9.662947 ACATTGATCATGTATATATCCTGTGTG 57.337 33.333 0.00 0.00 45.00 3.82
3205 5758 9.880157 CATTGATCATGTATATATCCTGTGTGA 57.120 33.333 0.00 0.00 0.00 3.58
3208 5761 9.880157 TGATCATGTATATATCCTGTGTGATTG 57.120 33.333 0.00 0.00 0.00 2.67
3209 5762 9.322773 GATCATGTATATATCCTGTGTGATTGG 57.677 37.037 0.00 0.00 0.00 3.16
3210 5763 7.105588 TCATGTATATATCCTGTGTGATTGGC 58.894 38.462 0.00 0.00 0.00 4.52
3211 5764 6.432403 TGTATATATCCTGTGTGATTGGCA 57.568 37.500 0.00 0.00 0.00 4.92
3212 5765 7.019656 TGTATATATCCTGTGTGATTGGCAT 57.980 36.000 0.00 0.00 0.00 4.40
3213 5766 7.460910 TGTATATATCCTGTGTGATTGGCATT 58.539 34.615 0.00 0.00 0.00 3.56
3214 5767 8.601546 TGTATATATCCTGTGTGATTGGCATTA 58.398 33.333 0.00 0.00 0.00 1.90
3215 5768 9.618890 GTATATATCCTGTGTGATTGGCATTAT 57.381 33.333 0.00 0.00 0.00 1.28
3217 5770 7.928307 ATATCCTGTGTGATTGGCATTATAC 57.072 36.000 0.00 0.00 0.00 1.47
3218 5771 4.460263 TCCTGTGTGATTGGCATTATACC 58.540 43.478 0.00 0.00 0.00 2.73
3219 5772 3.250762 CCTGTGTGATTGGCATTATACCG 59.749 47.826 0.00 0.00 0.00 4.02
3220 5773 3.876914 CTGTGTGATTGGCATTATACCGT 59.123 43.478 0.00 0.00 0.00 4.83
3221 5774 4.265893 TGTGTGATTGGCATTATACCGTT 58.734 39.130 0.00 0.00 0.00 4.44
3222 5775 4.702612 TGTGTGATTGGCATTATACCGTTT 59.297 37.500 0.00 0.00 0.00 3.60
3223 5776 5.880887 TGTGTGATTGGCATTATACCGTTTA 59.119 36.000 0.00 0.00 0.00 2.01
3224 5777 6.037720 TGTGTGATTGGCATTATACCGTTTAG 59.962 38.462 0.00 0.00 0.00 1.85
3225 5778 6.259167 GTGTGATTGGCATTATACCGTTTAGA 59.741 38.462 0.00 0.00 0.00 2.10
3226 5779 6.995686 TGTGATTGGCATTATACCGTTTAGAT 59.004 34.615 0.00 0.00 0.00 1.98
3227 5780 7.500892 TGTGATTGGCATTATACCGTTTAGATT 59.499 33.333 0.00 0.00 0.00 2.40
3228 5781 8.349983 GTGATTGGCATTATACCGTTTAGATTT 58.650 33.333 0.00 0.00 0.00 2.17
3229 5782 9.562408 TGATTGGCATTATACCGTTTAGATTTA 57.438 29.630 0.00 0.00 0.00 1.40
3231 5784 7.429636 TGGCATTATACCGTTTAGATTTAGC 57.570 36.000 0.00 0.00 0.00 3.09
3232 5785 7.221450 TGGCATTATACCGTTTAGATTTAGCT 58.779 34.615 0.00 0.00 0.00 3.32
3233 5786 7.172532 TGGCATTATACCGTTTAGATTTAGCTG 59.827 37.037 0.00 0.00 0.00 4.24
3234 5787 7.360946 GGCATTATACCGTTTAGATTTAGCTGG 60.361 40.741 0.00 0.00 0.00 4.85
3235 5788 7.386848 GCATTATACCGTTTAGATTTAGCTGGA 59.613 37.037 0.00 0.00 0.00 3.86
3236 5789 8.709646 CATTATACCGTTTAGATTTAGCTGGAC 58.290 37.037 0.00 0.00 0.00 4.02
3237 5790 4.820894 ACCGTTTAGATTTAGCTGGACT 57.179 40.909 0.00 0.00 0.00 3.85
3238 5791 4.756502 ACCGTTTAGATTTAGCTGGACTC 58.243 43.478 0.00 0.00 0.00 3.36
3239 5792 4.466726 ACCGTTTAGATTTAGCTGGACTCT 59.533 41.667 0.00 0.00 0.00 3.24
3240 5793 5.655532 ACCGTTTAGATTTAGCTGGACTCTA 59.344 40.000 0.00 0.00 0.00 2.43
3241 5794 6.183360 ACCGTTTAGATTTAGCTGGACTCTAG 60.183 42.308 0.00 0.00 0.00 2.43
3242 5795 5.688176 CGTTTAGATTTAGCTGGACTCTAGC 59.312 44.000 6.28 6.28 41.43 3.42
3250 5803 3.157932 GCTGGACTCTAGCTACTGTTG 57.842 52.381 7.14 0.00 38.14 3.33
3251 5804 2.494073 GCTGGACTCTAGCTACTGTTGT 59.506 50.000 7.14 0.00 38.14 3.32
3252 5805 3.428316 GCTGGACTCTAGCTACTGTTGTC 60.428 52.174 7.14 0.00 38.14 3.18
3253 5806 4.013728 CTGGACTCTAGCTACTGTTGTCT 58.986 47.826 0.00 0.00 0.00 3.41
3254 5807 4.408276 TGGACTCTAGCTACTGTTGTCTT 58.592 43.478 0.00 0.00 0.00 3.01
3255 5808 5.567430 TGGACTCTAGCTACTGTTGTCTTA 58.433 41.667 0.00 0.00 0.00 2.10
3256 5809 5.648526 TGGACTCTAGCTACTGTTGTCTTAG 59.351 44.000 0.00 0.00 0.00 2.18
3257 5810 5.449451 GGACTCTAGCTACTGTTGTCTTAGC 60.449 48.000 0.00 0.00 38.85 3.09
3259 5812 5.124776 ACTCTAGCTACTGTTGTCTTAGCTG 59.875 44.000 11.69 3.69 46.38 4.24
3260 5813 5.254115 TCTAGCTACTGTTGTCTTAGCTGA 58.746 41.667 11.69 5.59 46.38 4.26
3261 5814 4.873746 AGCTACTGTTGTCTTAGCTGAA 57.126 40.909 0.00 0.00 45.46 3.02
3262 5815 4.815269 AGCTACTGTTGTCTTAGCTGAAG 58.185 43.478 0.00 0.00 45.46 3.02
3263 5816 3.369451 GCTACTGTTGTCTTAGCTGAAGC 59.631 47.826 0.00 0.00 42.49 3.86
3273 5826 3.282271 GCTGAAGCTCCAAAGGCC 58.718 61.111 0.00 0.00 38.21 5.19
3274 5827 1.303970 GCTGAAGCTCCAAAGGCCT 60.304 57.895 0.00 0.00 38.21 5.19
3275 5828 0.035056 GCTGAAGCTCCAAAGGCCTA 60.035 55.000 5.16 0.00 38.21 3.93
3276 5829 1.409381 GCTGAAGCTCCAAAGGCCTAT 60.409 52.381 5.16 0.00 38.21 2.57
3277 5830 2.570135 CTGAAGCTCCAAAGGCCTATC 58.430 52.381 5.16 0.00 0.00 2.08
3278 5831 1.212935 TGAAGCTCCAAAGGCCTATCC 59.787 52.381 5.16 0.00 0.00 2.59
3280 5833 1.135960 AGCTCCAAAGGCCTATCCTC 58.864 55.000 5.16 0.00 46.94 3.71
3281 5834 0.839946 GCTCCAAAGGCCTATCCTCA 59.160 55.000 5.16 0.00 46.94 3.86
3282 5835 1.212935 GCTCCAAAGGCCTATCCTCAA 59.787 52.381 5.16 0.00 46.94 3.02
3283 5836 2.747799 GCTCCAAAGGCCTATCCTCAAG 60.748 54.545 5.16 0.00 46.94 3.02
3284 5837 2.774234 CTCCAAAGGCCTATCCTCAAGA 59.226 50.000 5.16 0.00 46.94 3.02
3285 5838 3.189606 TCCAAAGGCCTATCCTCAAGAA 58.810 45.455 5.16 0.00 46.94 2.52
3286 5839 3.788142 TCCAAAGGCCTATCCTCAAGAAT 59.212 43.478 5.16 0.00 46.94 2.40
3287 5840 4.140536 CCAAAGGCCTATCCTCAAGAATC 58.859 47.826 5.16 0.00 46.94 2.52
3288 5841 3.760580 AAGGCCTATCCTCAAGAATCG 57.239 47.619 5.16 0.00 46.94 3.34
3289 5842 2.683768 AGGCCTATCCTCAAGAATCGT 58.316 47.619 1.29 0.00 43.20 3.73
3290 5843 3.041946 AGGCCTATCCTCAAGAATCGTT 58.958 45.455 1.29 0.00 43.20 3.85
3291 5844 3.456277 AGGCCTATCCTCAAGAATCGTTT 59.544 43.478 1.29 0.00 43.20 3.60
3292 5845 3.561725 GGCCTATCCTCAAGAATCGTTTG 59.438 47.826 0.00 0.00 0.00 2.93
3293 5846 4.192317 GCCTATCCTCAAGAATCGTTTGT 58.808 43.478 0.00 0.00 0.00 2.83
3294 5847 4.636206 GCCTATCCTCAAGAATCGTTTGTT 59.364 41.667 0.00 0.00 0.00 2.83
3295 5848 5.220681 GCCTATCCTCAAGAATCGTTTGTTC 60.221 44.000 0.00 0.00 0.00 3.18
3296 5849 5.874810 CCTATCCTCAAGAATCGTTTGTTCA 59.125 40.000 0.00 0.00 0.00 3.18
3297 5850 6.540189 CCTATCCTCAAGAATCGTTTGTTCAT 59.460 38.462 0.00 0.00 0.00 2.57
3298 5851 5.862924 TCCTCAAGAATCGTTTGTTCATC 57.137 39.130 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.437049 ACAGAATGACGAAAAAGGCTAGC 59.563 43.478 6.04 6.04 39.69 3.42
203 215 6.073385 CGACTTCTTGCATGATGCTACATATT 60.073 38.462 19.19 0.00 45.31 1.28
232 442 7.637229 CATCAAACATAAGAGAGTTGCTATGG 58.363 38.462 0.00 0.00 0.00 2.74
557 783 7.911651 TCTGTTCAAGAGAGTCCAAATATCTT 58.088 34.615 0.00 0.00 0.00 2.40
868 1102 4.185394 TGCTTGAAAACTCGTGTTACTGA 58.815 39.130 2.88 0.00 34.96 3.41
869 1103 4.518217 CTGCTTGAAAACTCGTGTTACTG 58.482 43.478 2.88 1.59 34.96 2.74
870 1104 3.002348 GCTGCTTGAAAACTCGTGTTACT 59.998 43.478 2.88 0.00 34.96 2.24
871 1105 3.242608 TGCTGCTTGAAAACTCGTGTTAC 60.243 43.478 2.88 2.42 34.96 2.50
872 1106 2.939756 TGCTGCTTGAAAACTCGTGTTA 59.060 40.909 2.88 0.00 34.96 2.41
873 1107 1.742831 TGCTGCTTGAAAACTCGTGTT 59.257 42.857 0.00 0.00 38.16 3.32
874 1108 1.064060 GTGCTGCTTGAAAACTCGTGT 59.936 47.619 0.00 0.00 0.00 4.49
875 1109 1.597937 GGTGCTGCTTGAAAACTCGTG 60.598 52.381 0.00 0.00 0.00 4.35
876 1110 0.663153 GGTGCTGCTTGAAAACTCGT 59.337 50.000 0.00 0.00 0.00 4.18
877 1111 0.662619 TGGTGCTGCTTGAAAACTCG 59.337 50.000 0.00 0.00 0.00 4.18
878 1112 1.405105 TGTGGTGCTGCTTGAAAACTC 59.595 47.619 0.00 0.00 0.00 3.01
879 1113 1.134946 GTGTGGTGCTGCTTGAAAACT 59.865 47.619 0.00 0.00 0.00 2.66
880 1114 1.134946 AGTGTGGTGCTGCTTGAAAAC 59.865 47.619 0.00 0.00 0.00 2.43
881 1115 1.405105 GAGTGTGGTGCTGCTTGAAAA 59.595 47.619 0.00 0.00 0.00 2.29
882 1116 1.024271 GAGTGTGGTGCTGCTTGAAA 58.976 50.000 0.00 0.00 0.00 2.69
883 1117 1.159713 CGAGTGTGGTGCTGCTTGAA 61.160 55.000 0.00 0.00 0.00 2.69
884 1118 1.595109 CGAGTGTGGTGCTGCTTGA 60.595 57.895 0.00 0.00 0.00 3.02
885 1119 2.941333 CGAGTGTGGTGCTGCTTG 59.059 61.111 0.00 0.00 0.00 4.01
886 1120 2.099652 TAGCGAGTGTGGTGCTGCTT 62.100 55.000 0.00 0.00 39.73 3.91
887 1121 2.498291 CTAGCGAGTGTGGTGCTGCT 62.498 60.000 0.00 0.00 39.73 4.24
888 1122 2.048222 TAGCGAGTGTGGTGCTGC 60.048 61.111 0.00 0.00 39.73 5.25
889 1123 0.734253 GACTAGCGAGTGTGGTGCTG 60.734 60.000 3.45 0.00 39.73 4.41
890 1124 1.179174 TGACTAGCGAGTGTGGTGCT 61.179 55.000 3.45 0.00 42.58 4.40
891 1125 1.009389 GTGACTAGCGAGTGTGGTGC 61.009 60.000 3.45 0.00 35.45 5.01
892 1126 0.598562 AGTGACTAGCGAGTGTGGTG 59.401 55.000 3.45 0.00 35.45 4.17
893 1127 0.882474 GAGTGACTAGCGAGTGTGGT 59.118 55.000 3.45 0.00 35.45 4.16
894 1128 1.131504 GAGAGTGACTAGCGAGTGTGG 59.868 57.143 3.45 0.00 35.45 4.17
895 1129 1.131504 GGAGAGTGACTAGCGAGTGTG 59.868 57.143 3.45 0.00 35.45 3.82
896 1130 1.455248 GGAGAGTGACTAGCGAGTGT 58.545 55.000 3.45 0.00 35.45 3.55
897 1131 0.736053 GGGAGAGTGACTAGCGAGTG 59.264 60.000 3.45 0.00 35.45 3.51
898 1132 0.394625 GGGGAGAGTGACTAGCGAGT 60.395 60.000 0.00 0.00 39.20 4.18
899 1133 1.104577 GGGGGAGAGTGACTAGCGAG 61.105 65.000 0.00 0.00 0.00 5.03
900 1134 1.076923 GGGGGAGAGTGACTAGCGA 60.077 63.158 0.00 0.00 0.00 4.93
901 1135 3.527641 GGGGGAGAGTGACTAGCG 58.472 66.667 0.00 0.00 0.00 4.26
920 1154 2.180159 TTTAGCTGCAGTCGGGGGAC 62.180 60.000 16.64 0.00 0.00 4.46
921 1155 1.916273 TTTAGCTGCAGTCGGGGGA 60.916 57.895 16.64 0.00 0.00 4.81
922 1156 1.745489 GTTTAGCTGCAGTCGGGGG 60.745 63.158 16.64 0.00 0.00 5.40
923 1157 0.741221 GAGTTTAGCTGCAGTCGGGG 60.741 60.000 16.64 0.00 0.00 5.73
924 1158 0.741221 GGAGTTTAGCTGCAGTCGGG 60.741 60.000 16.64 0.00 35.45 5.14
925 1159 1.078759 CGGAGTTTAGCTGCAGTCGG 61.079 60.000 16.64 4.32 35.02 4.79
926 1160 1.687494 GCGGAGTTTAGCTGCAGTCG 61.687 60.000 16.64 7.81 37.58 4.18
927 1161 1.362406 GGCGGAGTTTAGCTGCAGTC 61.362 60.000 16.64 7.83 39.38 3.51
928 1162 1.376037 GGCGGAGTTTAGCTGCAGT 60.376 57.895 16.64 4.79 39.38 4.40
929 1163 2.456119 CGGCGGAGTTTAGCTGCAG 61.456 63.158 10.11 10.11 39.38 4.41
930 1164 2.434185 CGGCGGAGTTTAGCTGCA 60.434 61.111 1.02 0.00 39.38 4.41
931 1165 1.296056 TTTCGGCGGAGTTTAGCTGC 61.296 55.000 7.21 0.00 39.45 5.25
932 1166 1.136057 GTTTTCGGCGGAGTTTAGCTG 60.136 52.381 7.21 0.00 40.87 4.24
933 1167 1.154197 GTTTTCGGCGGAGTTTAGCT 58.846 50.000 7.21 0.00 0.00 3.32
934 1168 0.167470 GGTTTTCGGCGGAGTTTAGC 59.833 55.000 7.21 0.00 0.00 3.09
1271 1516 2.041115 GGCTTGGGGACGAAAGAGC 61.041 63.158 0.00 0.00 0.00 4.09
1301 1554 2.807470 CGTCGCACGCATACCACA 60.807 61.111 0.00 0.00 33.65 4.17
1343 1608 3.032265 TGCTACTAAGGCTGATCTCCA 57.968 47.619 7.22 0.00 0.00 3.86
1357 1622 2.885644 CGCGATGCCGTTGCTACT 60.886 61.111 0.00 0.00 38.71 2.57
1418 1692 1.604378 GATGTCAGGTCCCCAGGTG 59.396 63.158 0.00 0.00 0.00 4.00
1443 1720 1.967494 GCTTTGACGGGGGCGTTTA 60.967 57.895 0.00 0.00 0.00 2.01
1488 1771 4.099633 TGAACAAGGTCTCATCCTCATCT 58.900 43.478 0.00 0.00 36.74 2.90
1584 1867 2.430465 CAACTGGTTGATGCAGCTACT 58.570 47.619 15.75 0.00 42.93 2.57
1596 1879 2.508526 GTTGATGAGCTCCAACTGGTT 58.491 47.619 21.67 0.00 39.47 3.67
1597 1880 1.271597 GGTTGATGAGCTCCAACTGGT 60.272 52.381 25.42 1.54 41.57 4.00
1598 1881 1.271543 TGGTTGATGAGCTCCAACTGG 60.272 52.381 25.42 0.00 41.57 4.00
1599 1882 2.082231 CTGGTTGATGAGCTCCAACTG 58.918 52.381 25.42 18.04 41.57 3.16
1601 1884 2.191128 ACTGGTTGATGAGCTCCAAC 57.809 50.000 21.13 21.13 41.24 3.77
1602 1885 2.507484 CAACTGGTTGATGAGCTCCAA 58.493 47.619 12.15 6.27 42.93 3.53
1604 1887 1.003580 TCCAACTGGTTGATGAGCTCC 59.996 52.381 12.15 0.00 42.93 4.70
1605 1888 2.354259 CTCCAACTGGTTGATGAGCTC 58.646 52.381 6.82 6.82 42.93 4.09
1606 1889 1.612726 GCTCCAACTGGTTGATGAGCT 60.613 52.381 23.98 0.00 44.28 4.09
1607 1890 0.807496 GCTCCAACTGGTTGATGAGC 59.193 55.000 20.16 20.16 42.79 4.26
1608 1891 2.027377 AGAGCTCCAACTGGTTGATGAG 60.027 50.000 10.93 13.05 42.93 2.90
1609 1892 1.980765 AGAGCTCCAACTGGTTGATGA 59.019 47.619 10.93 4.16 42.93 2.92
1611 1894 3.152341 CAAAGAGCTCCAACTGGTTGAT 58.848 45.455 10.93 0.00 42.93 2.57
1612 1895 2.575532 CAAAGAGCTCCAACTGGTTGA 58.424 47.619 10.93 1.39 42.93 3.18
1613 1896 1.610522 CCAAAGAGCTCCAACTGGTTG 59.389 52.381 10.93 6.50 40.13 3.77
1696 1994 0.457443 GCCAAATAGAAGCAGCCACC 59.543 55.000 0.00 0.00 0.00 4.61
1726 2024 2.617274 GCACGAGCAACTTGTCCCC 61.617 63.158 0.00 0.00 41.58 4.81
1789 2090 2.002586 CCATCTGAGCTTTACGTGGTG 58.997 52.381 0.00 0.00 0.00 4.17
1794 2095 0.654683 GCAGCCATCTGAGCTTTACG 59.345 55.000 0.00 0.00 42.95 3.18
1933 2237 4.940463 CCATTTGGGCTGTTATCATCAAG 58.060 43.478 0.00 0.00 0.00 3.02
1976 2280 7.836842 AGATTCACCATTATTTTGTTGGGTAC 58.163 34.615 0.00 0.00 34.72 3.34
2013 2317 3.181465 ACGGTACAATATTCTCCAGCTGG 60.181 47.826 27.87 27.87 0.00 4.85
2140 2444 5.464030 TCCCAGTAAGTAGTCAACAACTC 57.536 43.478 0.00 0.00 39.55 3.01
2313 2617 5.958949 GCAAAGCACAACAAACATAAACAAG 59.041 36.000 0.00 0.00 0.00 3.16
2386 2712 3.809279 CCAAATTTCCAGGTTCACAAAGC 59.191 43.478 0.00 0.00 0.00 3.51
2412 2751 9.883142 TTGTTTGACAGGATAAAGAAACAAATT 57.117 25.926 0.00 0.00 39.23 1.82
2432 2771 5.241064 TGCCCCATTTCATTGAAATTGTTTG 59.759 36.000 19.55 11.13 39.82 2.93
2433 2772 5.383476 TGCCCCATTTCATTGAAATTGTTT 58.617 33.333 19.55 0.00 39.82 2.83
2443 2782 6.207221 GTCTTTTTCAATTGCCCCATTTCATT 59.793 34.615 0.00 0.00 0.00 2.57
2494 2834 4.646492 GCAAATTTGGAGGGATGTAGATGT 59.354 41.667 19.47 0.00 0.00 3.06
2501 2842 4.406649 AGGTTATGCAAATTTGGAGGGATG 59.593 41.667 19.47 0.00 30.13 3.51
2639 5192 5.184892 GGGTTCCATAGCCATCTCATATT 57.815 43.478 0.00 0.00 44.15 1.28
2657 5210 2.154462 CAGTCATGCTTCGAAAGGGTT 58.846 47.619 0.00 0.00 0.00 4.11
2665 5218 0.740164 AGCTGCTCAGTCATGCTTCG 60.740 55.000 0.00 0.00 0.00 3.79
2685 5238 8.067784 GTGCTAGTTTAAGATTAAATGCGCATA 58.932 33.333 25.61 8.84 37.08 3.14
2735 5288 5.256474 ACACTTTCAACTAAGGGGATGATG 58.744 41.667 0.00 0.00 32.71 3.07
2736 5289 5.520748 ACACTTTCAACTAAGGGGATGAT 57.479 39.130 0.00 0.00 32.71 2.45
2737 5290 4.993705 ACACTTTCAACTAAGGGGATGA 57.006 40.909 0.00 0.00 32.71 2.92
2738 5291 5.590259 CCATACACTTTCAACTAAGGGGATG 59.410 44.000 4.23 4.23 45.59 3.51
2818 5371 9.701098 GGTGGTATTATCTCGTATCAAATAACA 57.299 33.333 0.00 0.00 29.61 2.41
2831 5384 9.585369 GGTATAGGTATAGGGTGGTATTATCTC 57.415 40.741 0.00 0.00 0.00 2.75
2833 5386 8.291745 TGGGTATAGGTATAGGGTGGTATTATC 58.708 40.741 0.00 0.00 0.00 1.75
2851 5404 8.446599 AGAACAATATTTTTCGGTGGGTATAG 57.553 34.615 8.35 0.00 0.00 1.31
2852 5405 9.902684 TTAGAACAATATTTTTCGGTGGGTATA 57.097 29.630 8.35 0.00 0.00 1.47
2853 5406 8.810990 TTAGAACAATATTTTTCGGTGGGTAT 57.189 30.769 8.35 0.00 0.00 2.73
2854 5407 8.632906 TTTAGAACAATATTTTTCGGTGGGTA 57.367 30.769 8.35 0.00 0.00 3.69
2963 5516 4.678622 ACGAGCGACACATATGTTCATTA 58.321 39.130 5.37 0.00 39.95 1.90
2990 5543 4.430908 AGCGCATTACACCTTCTAGTAAC 58.569 43.478 11.47 0.00 33.49 2.50
2994 5547 3.307242 GTGAAGCGCATTACACCTTCTAG 59.693 47.826 11.47 0.00 35.80 2.43
2999 5552 1.442769 CAGTGAAGCGCATTACACCT 58.557 50.000 11.47 1.97 34.33 4.00
3000 5553 0.179189 GCAGTGAAGCGCATTACACC 60.179 55.000 11.47 0.00 34.33 4.16
3001 5554 3.296516 GCAGTGAAGCGCATTACAC 57.703 52.632 11.47 13.67 0.00 2.90
3010 5563 1.268778 GAAAAACGGCGCAGTGAAGC 61.269 55.000 15.45 0.89 0.00 3.86
3011 5564 0.028770 TGAAAAACGGCGCAGTGAAG 59.971 50.000 15.45 0.00 0.00 3.02
3012 5565 0.248296 GTGAAAAACGGCGCAGTGAA 60.248 50.000 15.45 0.00 0.00 3.18
3013 5566 1.353804 GTGAAAAACGGCGCAGTGA 59.646 52.632 15.45 0.00 0.00 3.41
3014 5567 1.657181 GGTGAAAAACGGCGCAGTG 60.657 57.895 15.45 2.48 0.00 3.66
3015 5568 2.719354 GGTGAAAAACGGCGCAGT 59.281 55.556 10.83 9.16 0.00 4.40
3016 5569 2.426752 CGGTGAAAAACGGCGCAG 60.427 61.111 10.83 8.25 0.00 5.18
3017 5570 3.203412 ACGGTGAAAAACGGCGCA 61.203 55.556 10.83 0.00 32.48 6.09
3018 5571 2.452366 ATCACGGTGAAAAACGGCGC 62.452 55.000 15.72 0.00 32.48 6.53
3019 5572 0.724453 CATCACGGTGAAAAACGGCG 60.724 55.000 15.72 4.80 32.48 6.46
3020 5573 0.589223 TCATCACGGTGAAAAACGGC 59.411 50.000 15.72 0.00 32.48 5.68
3021 5574 3.488489 GAATCATCACGGTGAAAAACGG 58.512 45.455 15.72 1.50 35.32 4.44
3022 5575 3.488489 GGAATCATCACGGTGAAAAACG 58.512 45.455 15.72 2.12 0.00 3.60
3023 5576 3.254657 TGGGAATCATCACGGTGAAAAAC 59.745 43.478 15.72 6.11 0.00 2.43
3024 5577 3.491342 TGGGAATCATCACGGTGAAAAA 58.509 40.909 15.72 4.01 0.00 1.94
3025 5578 3.081061 CTGGGAATCATCACGGTGAAAA 58.919 45.455 15.72 6.60 30.13 2.29
3026 5579 2.304470 TCTGGGAATCATCACGGTGAAA 59.696 45.455 15.72 6.97 36.66 2.69
3027 5580 1.905894 TCTGGGAATCATCACGGTGAA 59.094 47.619 15.72 0.00 36.66 3.18
3028 5581 1.482182 CTCTGGGAATCATCACGGTGA 59.518 52.381 14.01 14.01 36.66 4.02
3029 5582 1.473965 CCTCTGGGAATCATCACGGTG 60.474 57.143 0.56 0.56 36.66 4.94
3030 5583 0.833287 CCTCTGGGAATCATCACGGT 59.167 55.000 0.00 0.00 36.66 4.83
3031 5584 0.533755 GCCTCTGGGAATCATCACGG 60.534 60.000 0.00 0.00 36.62 4.94
3032 5585 0.178767 TGCCTCTGGGAATCATCACG 59.821 55.000 0.00 0.00 33.58 4.35
3033 5586 2.228059 CATGCCTCTGGGAATCATCAC 58.772 52.381 0.00 0.00 33.58 3.06
3034 5587 1.848388 ACATGCCTCTGGGAATCATCA 59.152 47.619 0.00 0.00 33.58 3.07
3035 5588 2.653234 ACATGCCTCTGGGAATCATC 57.347 50.000 0.00 0.00 33.58 2.92
3036 5589 3.393426 AAACATGCCTCTGGGAATCAT 57.607 42.857 0.00 0.00 33.58 2.45
3037 5590 2.905415 AAACATGCCTCTGGGAATCA 57.095 45.000 0.00 0.00 33.58 2.57
3038 5591 5.859205 AATTAAACATGCCTCTGGGAATC 57.141 39.130 0.00 0.00 33.58 2.52
3039 5592 5.104817 CCAAATTAAACATGCCTCTGGGAAT 60.105 40.000 0.00 0.00 33.58 3.01
3040 5593 4.222588 CCAAATTAAACATGCCTCTGGGAA 59.777 41.667 0.00 0.00 33.58 3.97
3041 5594 3.768757 CCAAATTAAACATGCCTCTGGGA 59.231 43.478 0.00 0.00 33.58 4.37
3042 5595 3.768757 TCCAAATTAAACATGCCTCTGGG 59.231 43.478 0.00 0.00 0.00 4.45
3043 5596 5.170748 GTTCCAAATTAAACATGCCTCTGG 58.829 41.667 0.00 0.00 0.00 3.86
3044 5597 4.858692 CGTTCCAAATTAAACATGCCTCTG 59.141 41.667 0.00 0.00 0.00 3.35
3045 5598 4.618227 GCGTTCCAAATTAAACATGCCTCT 60.618 41.667 0.00 0.00 0.00 3.69
3046 5599 3.612423 GCGTTCCAAATTAAACATGCCTC 59.388 43.478 0.00 0.00 0.00 4.70
3047 5600 3.258123 AGCGTTCCAAATTAAACATGCCT 59.742 39.130 0.00 0.00 0.00 4.75
3048 5601 3.584834 AGCGTTCCAAATTAAACATGCC 58.415 40.909 0.00 0.00 0.00 4.40
3049 5602 5.631512 TGTTAGCGTTCCAAATTAAACATGC 59.368 36.000 0.00 0.00 0.00 4.06
3050 5603 7.381139 ACTTGTTAGCGTTCCAAATTAAACATG 59.619 33.333 0.00 0.00 0.00 3.21
3051 5604 7.430441 ACTTGTTAGCGTTCCAAATTAAACAT 58.570 30.769 0.00 0.00 0.00 2.71
3052 5605 6.797454 ACTTGTTAGCGTTCCAAATTAAACA 58.203 32.000 0.00 0.00 0.00 2.83
3053 5606 8.684655 GTTACTTGTTAGCGTTCCAAATTAAAC 58.315 33.333 0.00 0.00 0.00 2.01
3054 5607 8.404000 TGTTACTTGTTAGCGTTCCAAATTAAA 58.596 29.630 0.00 0.00 0.00 1.52
3055 5608 7.928103 TGTTACTTGTTAGCGTTCCAAATTAA 58.072 30.769 0.00 0.00 0.00 1.40
3056 5609 7.493743 TGTTACTTGTTAGCGTTCCAAATTA 57.506 32.000 0.00 0.00 0.00 1.40
3057 5610 6.380095 TGTTACTTGTTAGCGTTCCAAATT 57.620 33.333 0.00 0.00 0.00 1.82
3058 5611 6.203647 GTTGTTACTTGTTAGCGTTCCAAAT 58.796 36.000 0.00 0.00 0.00 2.32
3059 5612 5.448904 GGTTGTTACTTGTTAGCGTTCCAAA 60.449 40.000 0.00 0.00 0.00 3.28
3060 5613 4.035441 GGTTGTTACTTGTTAGCGTTCCAA 59.965 41.667 0.00 0.00 0.00 3.53
3061 5614 3.560896 GGTTGTTACTTGTTAGCGTTCCA 59.439 43.478 0.00 0.00 0.00 3.53
3062 5615 3.560896 TGGTTGTTACTTGTTAGCGTTCC 59.439 43.478 0.00 0.00 0.00 3.62
3063 5616 4.034279 TGTGGTTGTTACTTGTTAGCGTTC 59.966 41.667 0.00 0.00 0.00 3.95
3064 5617 3.940221 TGTGGTTGTTACTTGTTAGCGTT 59.060 39.130 0.00 0.00 0.00 4.84
3065 5618 3.310501 GTGTGGTTGTTACTTGTTAGCGT 59.689 43.478 0.00 0.00 0.00 5.07
3066 5619 3.303526 GGTGTGGTTGTTACTTGTTAGCG 60.304 47.826 0.00 0.00 0.00 4.26
3067 5620 3.004002 GGGTGTGGTTGTTACTTGTTAGC 59.996 47.826 0.00 0.00 0.00 3.09
3068 5621 4.200874 TGGGTGTGGTTGTTACTTGTTAG 58.799 43.478 0.00 0.00 0.00 2.34
3069 5622 4.200874 CTGGGTGTGGTTGTTACTTGTTA 58.799 43.478 0.00 0.00 0.00 2.41
3070 5623 3.020984 CTGGGTGTGGTTGTTACTTGTT 58.979 45.455 0.00 0.00 0.00 2.83
3071 5624 2.025699 ACTGGGTGTGGTTGTTACTTGT 60.026 45.455 0.00 0.00 0.00 3.16
3072 5625 2.650322 ACTGGGTGTGGTTGTTACTTG 58.350 47.619 0.00 0.00 0.00 3.16
3073 5626 4.103469 TCATACTGGGTGTGGTTGTTACTT 59.897 41.667 0.00 0.00 0.00 2.24
3074 5627 3.649023 TCATACTGGGTGTGGTTGTTACT 59.351 43.478 0.00 0.00 0.00 2.24
3075 5628 4.010667 TCATACTGGGTGTGGTTGTTAC 57.989 45.455 0.00 0.00 0.00 2.50
3076 5629 4.708576 TTCATACTGGGTGTGGTTGTTA 57.291 40.909 0.00 0.00 0.00 2.41
3077 5630 3.586470 TTCATACTGGGTGTGGTTGTT 57.414 42.857 0.00 0.00 0.00 2.83
3078 5631 3.806949 ATTCATACTGGGTGTGGTTGT 57.193 42.857 0.00 0.00 0.00 3.32
3079 5632 5.684704 AGATATTCATACTGGGTGTGGTTG 58.315 41.667 0.00 0.00 0.00 3.77
3080 5633 5.428457 TGAGATATTCATACTGGGTGTGGTT 59.572 40.000 0.00 0.00 0.00 3.67
3081 5634 4.968719 TGAGATATTCATACTGGGTGTGGT 59.031 41.667 0.00 0.00 0.00 4.16
3082 5635 5.551305 TGAGATATTCATACTGGGTGTGG 57.449 43.478 0.00 0.00 0.00 4.17
3083 5636 8.370940 ACTTATGAGATATTCATACTGGGTGTG 58.629 37.037 0.00 0.00 45.99 3.82
3084 5637 8.370940 CACTTATGAGATATTCATACTGGGTGT 58.629 37.037 0.00 0.00 45.99 4.16
3085 5638 7.332926 GCACTTATGAGATATTCATACTGGGTG 59.667 40.741 0.00 11.62 45.99 4.61
3086 5639 7.016563 TGCACTTATGAGATATTCATACTGGGT 59.983 37.037 0.00 0.00 45.99 4.51
3087 5640 7.389232 TGCACTTATGAGATATTCATACTGGG 58.611 38.462 0.00 6.27 45.99 4.45
3088 5641 9.445878 AATGCACTTATGAGATATTCATACTGG 57.554 33.333 0.00 4.87 45.99 4.00
3109 5662 7.611467 ACTCTCTATCCAAAATTGTGTAATGCA 59.389 33.333 0.00 0.00 0.00 3.96
3110 5663 7.989826 ACTCTCTATCCAAAATTGTGTAATGC 58.010 34.615 0.00 0.00 0.00 3.56
3114 5667 9.653287 CTTGTACTCTCTATCCAAAATTGTGTA 57.347 33.333 0.00 0.00 0.00 2.90
3115 5668 8.157476 ACTTGTACTCTCTATCCAAAATTGTGT 58.843 33.333 0.00 0.00 0.00 3.72
3116 5669 8.553459 ACTTGTACTCTCTATCCAAAATTGTG 57.447 34.615 0.00 0.00 0.00 3.33
3117 5670 9.574516 AAACTTGTACTCTCTATCCAAAATTGT 57.425 29.630 0.00 0.00 0.00 2.71
3124 5677 8.964772 GGTAAGTAAACTTGTACTCTCTATCCA 58.035 37.037 5.62 0.00 37.40 3.41
3125 5678 8.127954 CGGTAAGTAAACTTGTACTCTCTATCC 58.872 40.741 5.62 0.00 37.40 2.59
3126 5679 7.643371 GCGGTAAGTAAACTTGTACTCTCTATC 59.357 40.741 5.62 0.00 37.40 2.08
3127 5680 7.121759 TGCGGTAAGTAAACTTGTACTCTCTAT 59.878 37.037 5.62 0.00 37.40 1.98
3128 5681 6.430925 TGCGGTAAGTAAACTTGTACTCTCTA 59.569 38.462 5.62 0.00 37.40 2.43
3129 5682 5.242393 TGCGGTAAGTAAACTTGTACTCTCT 59.758 40.000 5.62 0.00 37.40 3.10
3130 5683 5.464168 TGCGGTAAGTAAACTTGTACTCTC 58.536 41.667 5.62 0.00 37.40 3.20
3131 5684 5.458041 TGCGGTAAGTAAACTTGTACTCT 57.542 39.130 5.62 0.00 37.40 3.24
3132 5685 6.531439 CAATGCGGTAAGTAAACTTGTACTC 58.469 40.000 5.62 0.00 37.40 2.59
3133 5686 5.106830 GCAATGCGGTAAGTAAACTTGTACT 60.107 40.000 5.62 0.00 37.40 2.73
3134 5687 5.084055 GCAATGCGGTAAGTAAACTTGTAC 58.916 41.667 5.62 0.00 37.40 2.90
3135 5688 4.755629 TGCAATGCGGTAAGTAAACTTGTA 59.244 37.500 5.62 0.00 37.40 2.41
3136 5689 3.566322 TGCAATGCGGTAAGTAAACTTGT 59.434 39.130 5.62 0.00 37.40 3.16
3137 5690 4.153958 TGCAATGCGGTAAGTAAACTTG 57.846 40.909 5.62 0.00 37.40 3.16
3138 5691 4.794169 CTTGCAATGCGGTAAGTAAACTT 58.206 39.130 0.00 0.39 39.85 2.66
3139 5692 3.365969 GCTTGCAATGCGGTAAGTAAACT 60.366 43.478 0.00 0.00 33.64 2.66
3140 5693 2.914838 GCTTGCAATGCGGTAAGTAAAC 59.085 45.455 0.00 0.00 33.64 2.01
3141 5694 2.817258 AGCTTGCAATGCGGTAAGTAAA 59.183 40.909 0.00 0.00 42.59 2.01
3142 5695 2.161410 CAGCTTGCAATGCGGTAAGTAA 59.839 45.455 0.00 0.00 42.59 2.24
3143 5696 1.737236 CAGCTTGCAATGCGGTAAGTA 59.263 47.619 0.00 0.00 42.59 2.24
3144 5697 0.523072 CAGCTTGCAATGCGGTAAGT 59.477 50.000 0.00 0.00 42.59 2.24
3145 5698 0.804364 TCAGCTTGCAATGCGGTAAG 59.196 50.000 16.02 0.00 42.59 2.34
3146 5699 1.199789 CTTCAGCTTGCAATGCGGTAA 59.800 47.619 16.02 10.64 42.59 2.85
3147 5700 0.804364 CTTCAGCTTGCAATGCGGTA 59.196 50.000 16.02 9.25 42.59 4.02
3148 5701 1.582968 CTTCAGCTTGCAATGCGGT 59.417 52.632 16.02 2.74 42.59 5.68
3149 5702 1.804326 GCTTCAGCTTGCAATGCGG 60.804 57.895 0.00 7.12 42.59 5.69
3150 5703 3.763319 GCTTCAGCTTGCAATGCG 58.237 55.556 0.00 3.45 42.59 4.73
3160 5713 0.110010 GTTCGAGGCAAAGCTTCAGC 60.110 55.000 13.75 13.75 34.22 4.26
3161 5714 1.229428 TGTTCGAGGCAAAGCTTCAG 58.771 50.000 0.00 0.00 34.22 3.02
3162 5715 1.896220 ATGTTCGAGGCAAAGCTTCA 58.104 45.000 0.00 0.00 34.22 3.02
3163 5716 2.226437 TCAATGTTCGAGGCAAAGCTTC 59.774 45.455 0.00 0.00 0.00 3.86
3164 5717 2.229792 TCAATGTTCGAGGCAAAGCTT 58.770 42.857 0.00 0.00 0.00 3.74
3165 5718 1.896220 TCAATGTTCGAGGCAAAGCT 58.104 45.000 0.00 0.00 0.00 3.74
3166 5719 2.162208 TGATCAATGTTCGAGGCAAAGC 59.838 45.455 0.00 0.00 0.00 3.51
3167 5720 4.348656 CATGATCAATGTTCGAGGCAAAG 58.651 43.478 0.00 0.00 0.00 2.77
3168 5721 4.359971 CATGATCAATGTTCGAGGCAAA 57.640 40.909 0.00 0.00 0.00 3.68
3179 5732 9.880157 TCACACAGGATATATACATGATCAATG 57.120 33.333 0.00 1.45 42.48 2.82
3182 5735 9.880157 CAATCACACAGGATATATACATGATCA 57.120 33.333 0.00 0.00 0.00 2.92
3183 5736 9.322773 CCAATCACACAGGATATATACATGATC 57.677 37.037 0.00 0.00 0.00 2.92
3184 5737 7.772292 GCCAATCACACAGGATATATACATGAT 59.228 37.037 0.00 3.20 0.00 2.45
3185 5738 7.105588 GCCAATCACACAGGATATATACATGA 58.894 38.462 0.00 1.21 0.00 3.07
3186 5739 6.880529 TGCCAATCACACAGGATATATACATG 59.119 38.462 0.00 0.00 0.00 3.21
3187 5740 7.019656 TGCCAATCACACAGGATATATACAT 57.980 36.000 0.00 0.00 0.00 2.29
3188 5741 6.432403 TGCCAATCACACAGGATATATACA 57.568 37.500 0.00 0.00 0.00 2.29
3189 5742 7.928307 AATGCCAATCACACAGGATATATAC 57.072 36.000 0.00 0.00 0.00 1.47
3191 5744 9.618890 GTATAATGCCAATCACACAGGATATAT 57.381 33.333 0.00 0.00 0.00 0.86
3192 5745 8.046708 GGTATAATGCCAATCACACAGGATATA 58.953 37.037 0.00 0.00 0.00 0.86
3193 5746 6.886459 GGTATAATGCCAATCACACAGGATAT 59.114 38.462 0.00 0.00 0.00 1.63
3194 5747 6.237901 GGTATAATGCCAATCACACAGGATA 58.762 40.000 0.00 0.00 0.00 2.59
3195 5748 5.072741 GGTATAATGCCAATCACACAGGAT 58.927 41.667 0.00 0.00 0.00 3.24
3196 5749 4.460263 GGTATAATGCCAATCACACAGGA 58.540 43.478 0.00 0.00 0.00 3.86
3197 5750 3.250762 CGGTATAATGCCAATCACACAGG 59.749 47.826 0.00 0.00 0.00 4.00
3198 5751 3.876914 ACGGTATAATGCCAATCACACAG 59.123 43.478 0.00 0.00 0.00 3.66
3199 5752 3.879998 ACGGTATAATGCCAATCACACA 58.120 40.909 0.00 0.00 0.00 3.72
3200 5753 4.893424 AACGGTATAATGCCAATCACAC 57.107 40.909 0.00 0.00 0.00 3.82
3201 5754 6.350103 TCTAAACGGTATAATGCCAATCACA 58.650 36.000 0.00 0.00 0.00 3.58
3202 5755 6.854496 TCTAAACGGTATAATGCCAATCAC 57.146 37.500 0.00 0.00 0.00 3.06
3203 5756 8.458573 AAATCTAAACGGTATAATGCCAATCA 57.541 30.769 0.00 0.00 0.00 2.57
3205 5758 8.512138 GCTAAATCTAAACGGTATAATGCCAAT 58.488 33.333 0.00 0.00 0.00 3.16
3206 5759 7.717875 AGCTAAATCTAAACGGTATAATGCCAA 59.282 33.333 0.00 0.00 0.00 4.52
3207 5760 7.172532 CAGCTAAATCTAAACGGTATAATGCCA 59.827 37.037 0.00 0.00 0.00 4.92
3208 5761 7.360946 CCAGCTAAATCTAAACGGTATAATGCC 60.361 40.741 0.00 0.00 0.00 4.40
3209 5762 7.386848 TCCAGCTAAATCTAAACGGTATAATGC 59.613 37.037 0.00 0.00 0.00 3.56
3210 5763 8.709646 GTCCAGCTAAATCTAAACGGTATAATG 58.290 37.037 0.00 0.00 0.00 1.90
3211 5764 8.648693 AGTCCAGCTAAATCTAAACGGTATAAT 58.351 33.333 0.00 0.00 0.00 1.28
3212 5765 8.015185 AGTCCAGCTAAATCTAAACGGTATAA 57.985 34.615 0.00 0.00 0.00 0.98
3213 5766 7.504911 AGAGTCCAGCTAAATCTAAACGGTATA 59.495 37.037 0.00 0.00 0.00 1.47
3214 5767 6.324254 AGAGTCCAGCTAAATCTAAACGGTAT 59.676 38.462 0.00 0.00 0.00 2.73
3215 5768 5.655532 AGAGTCCAGCTAAATCTAAACGGTA 59.344 40.000 0.00 0.00 0.00 4.02
3216 5769 4.466726 AGAGTCCAGCTAAATCTAAACGGT 59.533 41.667 0.00 0.00 0.00 4.83
3217 5770 5.012328 AGAGTCCAGCTAAATCTAAACGG 57.988 43.478 0.00 0.00 0.00 4.44
3218 5771 5.688176 GCTAGAGTCCAGCTAAATCTAAACG 59.312 44.000 3.03 0.00 36.07 3.60
3230 5783 2.494073 ACAACAGTAGCTAGAGTCCAGC 59.506 50.000 1.88 1.88 39.41 4.85
3231 5784 4.013728 AGACAACAGTAGCTAGAGTCCAG 58.986 47.826 0.00 0.00 0.00 3.86
3232 5785 4.035612 AGACAACAGTAGCTAGAGTCCA 57.964 45.455 0.00 0.00 0.00 4.02
3233 5786 5.449451 GCTAAGACAACAGTAGCTAGAGTCC 60.449 48.000 0.00 0.00 37.78 3.85
3234 5787 5.355910 AGCTAAGACAACAGTAGCTAGAGTC 59.644 44.000 2.68 0.00 46.73 3.36
3235 5788 5.124776 CAGCTAAGACAACAGTAGCTAGAGT 59.875 44.000 4.23 0.00 46.85 3.24
3236 5789 5.355630 TCAGCTAAGACAACAGTAGCTAGAG 59.644 44.000 4.23 0.00 46.85 2.43
3237 5790 5.254115 TCAGCTAAGACAACAGTAGCTAGA 58.746 41.667 4.23 3.03 46.85 2.43
3238 5791 5.568685 TCAGCTAAGACAACAGTAGCTAG 57.431 43.478 4.23 0.00 46.85 3.42
3239 5792 5.622460 GCTTCAGCTAAGACAACAGTAGCTA 60.622 44.000 4.23 0.00 46.85 3.32
3241 5794 3.369451 GCTTCAGCTAAGACAACAGTAGC 59.631 47.826 7.00 0.00 40.47 3.58
3256 5809 0.035056 TAGGCCTTTGGAGCTTCAGC 60.035 55.000 12.58 0.00 42.49 4.26
3257 5810 2.570135 GATAGGCCTTTGGAGCTTCAG 58.430 52.381 12.58 0.00 0.00 3.02
3258 5811 1.212935 GGATAGGCCTTTGGAGCTTCA 59.787 52.381 12.58 0.00 0.00 3.02
3259 5812 1.974265 GGATAGGCCTTTGGAGCTTC 58.026 55.000 12.58 0.00 0.00 3.86
3270 5823 3.477210 AACGATTCTTGAGGATAGGCC 57.523 47.619 0.00 0.00 0.00 5.19
3271 5824 4.192317 ACAAACGATTCTTGAGGATAGGC 58.808 43.478 0.00 0.00 0.00 3.93
3272 5825 5.874810 TGAACAAACGATTCTTGAGGATAGG 59.125 40.000 0.00 0.00 0.00 2.57
3273 5826 6.968131 TGAACAAACGATTCTTGAGGATAG 57.032 37.500 0.00 0.00 0.00 2.08
3274 5827 7.539712 GATGAACAAACGATTCTTGAGGATA 57.460 36.000 0.00 0.00 0.00 2.59
3275 5828 6.428385 GATGAACAAACGATTCTTGAGGAT 57.572 37.500 0.00 0.00 0.00 3.24
3276 5829 5.862924 GATGAACAAACGATTCTTGAGGA 57.137 39.130 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.