Multiple sequence alignment - TraesCS6D01G090700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G090700 chr6D 100.000 3763 0 0 1 3763 56550372 56554134 0.000000e+00 6950.0
1 TraesCS6D01G090700 chr6D 75.866 895 188 27 1861 2738 399219730 399218847 7.470000e-117 431.0
2 TraesCS6D01G090700 chr6A 86.782 3571 211 125 326 3763 71065461 71068903 0.000000e+00 3738.0
3 TraesCS6D01G090700 chr6A 89.441 483 33 10 3170 3642 71069744 71070218 9.000000e-166 593.0
4 TraesCS6D01G090700 chr6A 76.201 895 185 26 1861 2738 545319742 545318859 7.410000e-122 448.0
5 TraesCS6D01G090700 chr6B 88.028 3199 192 83 408 3492 127038548 127041669 0.000000e+00 3609.0
6 TraesCS6D01G090700 chr6B 75.920 897 184 31 1861 2738 597557619 597556736 7.470000e-117 431.0
7 TraesCS6D01G090700 chr7A 79.178 1143 209 21 1615 2738 602231931 602233063 0.000000e+00 765.0
8 TraesCS6D01G090700 chr7D 79.104 1139 211 19 1618 2738 521894951 521893822 0.000000e+00 760.0
9 TraesCS6D01G090700 chr7D 74.199 1093 227 48 1629 2686 198501255 198502327 4.530000e-109 405.0
10 TraesCS6D01G090700 chr7B 78.390 1143 212 27 1618 2738 555709462 555708333 0.000000e+00 710.0
11 TraesCS6D01G090700 chr3D 92.500 40 2 1 3715 3754 104778025 104777987 5.250000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G090700 chr6D 56550372 56554134 3762 False 6950.0 6950 100.0000 1 3763 1 chr6D.!!$F1 3762
1 TraesCS6D01G090700 chr6D 399218847 399219730 883 True 431.0 431 75.8660 1861 2738 1 chr6D.!!$R1 877
2 TraesCS6D01G090700 chr6A 71065461 71070218 4757 False 2165.5 3738 88.1115 326 3763 2 chr6A.!!$F1 3437
3 TraesCS6D01G090700 chr6A 545318859 545319742 883 True 448.0 448 76.2010 1861 2738 1 chr6A.!!$R1 877
4 TraesCS6D01G090700 chr6B 127038548 127041669 3121 False 3609.0 3609 88.0280 408 3492 1 chr6B.!!$F1 3084
5 TraesCS6D01G090700 chr6B 597556736 597557619 883 True 431.0 431 75.9200 1861 2738 1 chr6B.!!$R1 877
6 TraesCS6D01G090700 chr7A 602231931 602233063 1132 False 765.0 765 79.1780 1615 2738 1 chr7A.!!$F1 1123
7 TraesCS6D01G090700 chr7D 521893822 521894951 1129 True 760.0 760 79.1040 1618 2738 1 chr7D.!!$R1 1120
8 TraesCS6D01G090700 chr7D 198501255 198502327 1072 False 405.0 405 74.1990 1629 2686 1 chr7D.!!$F1 1057
9 TraesCS6D01G090700 chr7B 555708333 555709462 1129 True 710.0 710 78.3900 1618 2738 1 chr7B.!!$R1 1120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.036388 TCAGATCCGAAGCACCCAAC 60.036 55.0 0.0 0.0 0.00 3.77 F
58 59 0.103026 TCGTCGGGCATGATGAGAAG 59.897 55.0 0.0 0.0 30.60 2.85 F
411 416 0.241749 CCGTGACGCTGGTAAGTACA 59.758 55.0 0.0 0.0 0.00 2.90 F
1380 1512 0.241481 CGGAGCTACCTAGAATCGGC 59.759 60.0 0.0 0.0 36.31 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1337 1445 0.034059 ATCGGTCAATCGATCCAGGC 59.966 55.0 0.00 0.00 45.43 4.85 R
1369 1501 0.034059 AGCAATCGGCCGATTCTAGG 59.966 55.0 42.73 32.79 46.50 3.02 R
1474 1606 0.325671 GTCCTCCACATCCTCCTCCA 60.326 60.0 0.00 0.00 0.00 3.86 R
3330 3536 0.179127 ACACATCGATCAGCTGACGG 60.179 55.0 26.93 19.37 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.892918 CCATTCATTCAGATCCGAAGC 57.107 47.619 0.00 0.00 0.00 3.86
21 22 3.208594 CCATTCATTCAGATCCGAAGCA 58.791 45.455 0.00 0.00 0.00 3.91
22 23 3.003068 CCATTCATTCAGATCCGAAGCAC 59.997 47.826 0.00 0.00 0.00 4.40
23 24 2.315925 TCATTCAGATCCGAAGCACC 57.684 50.000 0.00 0.00 0.00 5.01
24 25 1.134401 TCATTCAGATCCGAAGCACCC 60.134 52.381 0.00 0.00 0.00 4.61
25 26 0.911769 ATTCAGATCCGAAGCACCCA 59.088 50.000 0.00 0.00 0.00 4.51
27 28 0.036388 TCAGATCCGAAGCACCCAAC 60.036 55.000 0.00 0.00 0.00 3.77
28 29 0.321564 CAGATCCGAAGCACCCAACA 60.322 55.000 0.00 0.00 0.00 3.33
29 30 0.321653 AGATCCGAAGCACCCAACAC 60.322 55.000 0.00 0.00 0.00 3.32
30 31 1.303317 ATCCGAAGCACCCAACACC 60.303 57.895 0.00 0.00 0.00 4.16
31 32 2.063015 ATCCGAAGCACCCAACACCA 62.063 55.000 0.00 0.00 0.00 4.17
32 33 2.260869 CCGAAGCACCCAACACCAG 61.261 63.158 0.00 0.00 0.00 4.00
33 34 1.227823 CGAAGCACCCAACACCAGA 60.228 57.895 0.00 0.00 0.00 3.86
34 35 1.230635 CGAAGCACCCAACACCAGAG 61.231 60.000 0.00 0.00 0.00 3.35
35 36 1.518903 GAAGCACCCAACACCAGAGC 61.519 60.000 0.00 0.00 0.00 4.09
36 37 1.999634 AAGCACCCAACACCAGAGCT 62.000 55.000 0.00 0.00 0.00 4.09
37 38 1.968540 GCACCCAACACCAGAGCTC 60.969 63.158 5.27 5.27 0.00 4.09
38 39 1.669115 CACCCAACACCAGAGCTCG 60.669 63.158 8.37 3.24 0.00 5.03
39 40 2.140792 ACCCAACACCAGAGCTCGT 61.141 57.895 8.37 0.00 0.00 4.18
40 41 1.374758 CCCAACACCAGAGCTCGTC 60.375 63.158 8.37 0.00 0.00 4.20
41 42 1.734477 CCAACACCAGAGCTCGTCG 60.734 63.158 8.37 1.99 0.00 5.12
42 43 1.007271 CAACACCAGAGCTCGTCGT 60.007 57.895 8.37 2.68 0.00 4.34
43 44 1.004277 CAACACCAGAGCTCGTCGTC 61.004 60.000 8.37 0.00 0.00 4.20
44 45 2.202362 CACCAGAGCTCGTCGTCG 60.202 66.667 8.37 0.00 38.55 5.12
45 46 3.432588 ACCAGAGCTCGTCGTCGG 61.433 66.667 8.37 5.99 37.69 4.79
46 47 4.180946 CCAGAGCTCGTCGTCGGG 62.181 72.222 8.37 0.00 40.98 5.14
52 53 2.413351 CTCGTCGTCGGGCATGAT 59.587 61.111 0.00 0.00 37.69 2.45
53 54 1.946156 CTCGTCGTCGGGCATGATG 60.946 63.158 0.00 0.00 37.69 3.07
54 55 2.104132 CGTCGTCGGGCATGATGA 59.896 61.111 0.00 0.00 0.00 2.92
55 56 1.946156 CGTCGTCGGGCATGATGAG 60.946 63.158 0.00 0.00 34.68 2.90
56 57 1.437573 GTCGTCGGGCATGATGAGA 59.562 57.895 0.00 0.00 34.68 3.27
57 58 0.179111 GTCGTCGGGCATGATGAGAA 60.179 55.000 0.00 0.00 34.68 2.87
58 59 0.103026 TCGTCGGGCATGATGAGAAG 59.897 55.000 0.00 0.00 30.60 2.85
59 60 1.493950 CGTCGGGCATGATGAGAAGC 61.494 60.000 0.00 0.00 0.00 3.86
60 61 1.146930 TCGGGCATGATGAGAAGCC 59.853 57.895 0.00 0.00 46.28 4.35
64 65 1.977056 GGCATGATGAGAAGCCATGA 58.023 50.000 0.00 0.00 46.26 3.07
65 66 1.607628 GGCATGATGAGAAGCCATGAC 59.392 52.381 0.00 0.00 46.26 3.06
66 67 1.607628 GCATGATGAGAAGCCATGACC 59.392 52.381 0.00 0.00 39.86 4.02
67 68 2.748798 GCATGATGAGAAGCCATGACCT 60.749 50.000 0.00 0.00 39.86 3.85
68 69 2.996249 TGATGAGAAGCCATGACCTC 57.004 50.000 0.00 0.00 0.00 3.85
69 70 2.190538 TGATGAGAAGCCATGACCTCA 58.809 47.619 0.00 1.59 39.60 3.86
70 71 2.093288 TGATGAGAAGCCATGACCTCAC 60.093 50.000 0.00 0.00 38.32 3.51
71 72 0.615331 TGAGAAGCCATGACCTCACC 59.385 55.000 0.00 0.00 31.45 4.02
72 73 0.460987 GAGAAGCCATGACCTCACCG 60.461 60.000 0.00 0.00 0.00 4.94
73 74 2.045926 AAGCCATGACCTCACCGC 60.046 61.111 0.00 0.00 0.00 5.68
74 75 2.527951 GAAGCCATGACCTCACCGCT 62.528 60.000 0.00 0.00 35.74 5.52
75 76 2.512515 GCCATGACCTCACCGCTC 60.513 66.667 0.00 0.00 0.00 5.03
76 77 2.187946 CCATGACCTCACCGCTCC 59.812 66.667 0.00 0.00 0.00 4.70
77 78 2.202797 CATGACCTCACCGCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
89 90 4.415332 GCTCCGGCGAGACGACAA 62.415 66.667 9.30 0.00 38.52 3.18
90 91 2.257371 CTCCGGCGAGACGACAAA 59.743 61.111 9.30 0.00 38.52 2.83
91 92 1.801913 CTCCGGCGAGACGACAAAG 60.802 63.158 9.30 0.00 38.52 2.77
92 93 2.809601 CCGGCGAGACGACAAAGG 60.810 66.667 9.30 0.00 32.52 3.11
93 94 2.049433 CGGCGAGACGACAAAGGT 60.049 61.111 0.00 0.00 32.52 3.50
94 95 1.663702 CGGCGAGACGACAAAGGTT 60.664 57.895 0.00 0.00 32.52 3.50
95 96 1.219522 CGGCGAGACGACAAAGGTTT 61.220 55.000 0.00 0.00 32.52 3.27
96 97 1.787012 GGCGAGACGACAAAGGTTTA 58.213 50.000 0.00 0.00 33.63 2.01
97 98 1.458445 GGCGAGACGACAAAGGTTTAC 59.542 52.381 0.00 0.00 33.63 2.01
98 99 1.123756 GCGAGACGACAAAGGTTTACG 59.876 52.381 0.00 0.00 0.00 3.18
99 100 1.717645 CGAGACGACAAAGGTTTACGG 59.282 52.381 0.00 0.00 0.00 4.02
100 101 2.747436 GAGACGACAAAGGTTTACGGT 58.253 47.619 0.00 0.00 0.00 4.83
101 102 3.609175 CGAGACGACAAAGGTTTACGGTA 60.609 47.826 0.00 0.00 0.00 4.02
102 103 3.905784 AGACGACAAAGGTTTACGGTAG 58.094 45.455 0.00 0.00 0.00 3.18
103 104 3.569701 AGACGACAAAGGTTTACGGTAGA 59.430 43.478 0.00 0.00 0.00 2.59
104 105 4.037923 AGACGACAAAGGTTTACGGTAGAA 59.962 41.667 0.00 0.00 0.00 2.10
105 106 4.692228 ACGACAAAGGTTTACGGTAGAAA 58.308 39.130 0.00 0.00 0.00 2.52
106 107 4.507756 ACGACAAAGGTTTACGGTAGAAAC 59.492 41.667 0.00 0.00 36.29 2.78
121 122 6.345920 GGTAGAAACCGATGTAATCAAGTG 57.654 41.667 0.00 0.00 45.97 3.16
122 123 5.873164 GGTAGAAACCGATGTAATCAAGTGT 59.127 40.000 0.00 0.00 45.97 3.55
123 124 6.370718 GGTAGAAACCGATGTAATCAAGTGTT 59.629 38.462 0.00 0.00 45.97 3.32
124 125 6.241207 AGAAACCGATGTAATCAAGTGTTG 57.759 37.500 0.00 0.00 45.97 3.33
125 126 5.181245 AGAAACCGATGTAATCAAGTGTTGG 59.819 40.000 0.00 0.00 45.97 3.77
126 127 3.343617 ACCGATGTAATCAAGTGTTGGG 58.656 45.455 0.00 0.00 45.97 4.12
127 128 2.097466 CCGATGTAATCAAGTGTTGGGC 59.903 50.000 0.00 0.00 45.97 5.36
128 129 2.097466 CGATGTAATCAAGTGTTGGGCC 59.903 50.000 0.00 0.00 45.97 5.80
129 130 2.666272 TGTAATCAAGTGTTGGGCCA 57.334 45.000 0.00 0.00 0.00 5.36
130 131 3.168035 TGTAATCAAGTGTTGGGCCAT 57.832 42.857 7.26 0.00 0.00 4.40
131 132 2.824936 TGTAATCAAGTGTTGGGCCATG 59.175 45.455 7.26 1.46 0.00 3.66
132 133 2.014010 AATCAAGTGTTGGGCCATGT 57.986 45.000 7.26 0.00 0.00 3.21
133 134 1.549203 ATCAAGTGTTGGGCCATGTC 58.451 50.000 7.26 1.60 0.00 3.06
134 135 0.478072 TCAAGTGTTGGGCCATGTCT 59.522 50.000 7.26 2.77 0.00 3.41
135 136 1.133513 TCAAGTGTTGGGCCATGTCTT 60.134 47.619 7.26 9.35 0.00 3.01
136 137 1.270550 CAAGTGTTGGGCCATGTCTTC 59.729 52.381 7.26 0.00 0.00 2.87
137 138 0.478072 AGTGTTGGGCCATGTCTTCA 59.522 50.000 7.26 0.00 0.00 3.02
138 139 1.133513 AGTGTTGGGCCATGTCTTCAA 60.134 47.619 7.26 0.00 0.00 2.69
139 140 1.686052 GTGTTGGGCCATGTCTTCAAA 59.314 47.619 7.26 0.00 0.00 2.69
140 141 2.299867 GTGTTGGGCCATGTCTTCAAAT 59.700 45.455 7.26 0.00 0.00 2.32
141 142 2.299582 TGTTGGGCCATGTCTTCAAATG 59.700 45.455 7.26 0.00 0.00 2.32
142 143 0.896923 TGGGCCATGTCTTCAAATGC 59.103 50.000 0.00 0.00 0.00 3.56
143 144 0.896923 GGGCCATGTCTTCAAATGCA 59.103 50.000 4.39 0.00 0.00 3.96
144 145 1.134907 GGGCCATGTCTTCAAATGCAG 60.135 52.381 4.39 0.00 0.00 4.41
145 146 1.547372 GGCCATGTCTTCAAATGCAGT 59.453 47.619 0.00 0.00 0.00 4.40
146 147 2.754552 GGCCATGTCTTCAAATGCAGTA 59.245 45.455 0.00 0.00 0.00 2.74
147 148 3.428045 GGCCATGTCTTCAAATGCAGTAC 60.428 47.826 0.00 0.00 0.00 2.73
148 149 3.191162 GCCATGTCTTCAAATGCAGTACA 59.809 43.478 0.00 0.00 0.00 2.90
149 150 4.673580 GCCATGTCTTCAAATGCAGTACAG 60.674 45.833 0.00 0.00 0.00 2.74
150 151 4.456911 CCATGTCTTCAAATGCAGTACAGT 59.543 41.667 0.00 0.00 0.00 3.55
151 152 5.643348 CCATGTCTTCAAATGCAGTACAGTA 59.357 40.000 0.00 0.00 0.00 2.74
152 153 6.402550 CCATGTCTTCAAATGCAGTACAGTAC 60.403 42.308 2.05 2.05 0.00 2.73
153 154 4.994852 TGTCTTCAAATGCAGTACAGTACC 59.005 41.667 7.13 0.00 0.00 3.34
154 155 5.221641 TGTCTTCAAATGCAGTACAGTACCT 60.222 40.000 7.13 0.00 0.00 3.08
155 156 5.701290 GTCTTCAAATGCAGTACAGTACCTT 59.299 40.000 7.13 0.00 0.00 3.50
156 157 5.932303 TCTTCAAATGCAGTACAGTACCTTC 59.068 40.000 7.13 0.00 0.00 3.46
157 158 5.222079 TCAAATGCAGTACAGTACCTTCA 57.778 39.130 7.13 3.69 0.00 3.02
158 159 5.804639 TCAAATGCAGTACAGTACCTTCAT 58.195 37.500 7.13 5.76 0.00 2.57
159 160 5.643348 TCAAATGCAGTACAGTACCTTCATG 59.357 40.000 7.13 0.10 0.00 3.07
160 161 2.972625 TGCAGTACAGTACCTTCATGC 58.027 47.619 12.75 12.75 0.00 4.06
161 162 1.927174 GCAGTACAGTACCTTCATGCG 59.073 52.381 7.13 0.00 0.00 4.73
162 163 2.674177 GCAGTACAGTACCTTCATGCGT 60.674 50.000 7.13 0.00 0.00 5.24
163 164 3.585862 CAGTACAGTACCTTCATGCGTT 58.414 45.455 7.13 0.00 0.00 4.84
164 165 3.367932 CAGTACAGTACCTTCATGCGTTG 59.632 47.826 7.13 0.00 0.00 4.10
165 166 1.808411 ACAGTACCTTCATGCGTTGG 58.192 50.000 0.00 0.00 0.00 3.77
166 167 1.071699 ACAGTACCTTCATGCGTTGGT 59.928 47.619 0.00 0.00 36.66 3.67
167 168 2.151202 CAGTACCTTCATGCGTTGGTT 58.849 47.619 1.03 0.00 34.33 3.67
168 169 2.095768 CAGTACCTTCATGCGTTGGTTG 60.096 50.000 1.03 0.00 34.33 3.77
169 170 2.147958 GTACCTTCATGCGTTGGTTGA 58.852 47.619 1.03 0.00 34.33 3.18
170 171 1.909700 ACCTTCATGCGTTGGTTGAT 58.090 45.000 0.00 0.00 0.00 2.57
171 172 2.238521 ACCTTCATGCGTTGGTTGATT 58.761 42.857 0.00 0.00 0.00 2.57
172 173 2.627699 ACCTTCATGCGTTGGTTGATTT 59.372 40.909 0.00 0.00 0.00 2.17
173 174 3.069443 ACCTTCATGCGTTGGTTGATTTT 59.931 39.130 0.00 0.00 0.00 1.82
174 175 3.674753 CCTTCATGCGTTGGTTGATTTTC 59.325 43.478 0.00 0.00 0.00 2.29
175 176 3.998099 TCATGCGTTGGTTGATTTTCA 57.002 38.095 0.00 0.00 0.00 2.69
176 177 4.517952 TCATGCGTTGGTTGATTTTCAT 57.482 36.364 0.00 0.00 0.00 2.57
177 178 5.635417 TCATGCGTTGGTTGATTTTCATA 57.365 34.783 0.00 0.00 0.00 2.15
178 179 5.398169 TCATGCGTTGGTTGATTTTCATAC 58.602 37.500 0.00 0.00 0.00 2.39
179 180 4.167554 TGCGTTGGTTGATTTTCATACC 57.832 40.909 0.00 0.00 32.16 2.73
180 181 3.168193 GCGTTGGTTGATTTTCATACCG 58.832 45.455 0.00 0.00 33.33 4.02
181 182 3.120130 GCGTTGGTTGATTTTCATACCGA 60.120 43.478 0.00 0.00 33.33 4.69
182 183 4.647964 CGTTGGTTGATTTTCATACCGAG 58.352 43.478 0.00 0.00 33.33 4.63
183 184 4.390603 CGTTGGTTGATTTTCATACCGAGA 59.609 41.667 0.00 0.00 33.33 4.04
184 185 5.106869 CGTTGGTTGATTTTCATACCGAGAA 60.107 40.000 0.00 0.00 33.33 2.87
185 186 5.873179 TGGTTGATTTTCATACCGAGAAC 57.127 39.130 0.00 0.00 33.33 3.01
186 187 4.698304 TGGTTGATTTTCATACCGAGAACC 59.302 41.667 0.00 0.00 33.33 3.62
187 188 4.698304 GGTTGATTTTCATACCGAGAACCA 59.302 41.667 0.00 0.00 32.31 3.67
188 189 5.182380 GGTTGATTTTCATACCGAGAACCAA 59.818 40.000 0.00 0.00 32.31 3.67
189 190 6.294286 GGTTGATTTTCATACCGAGAACCAAA 60.294 38.462 0.00 0.00 32.31 3.28
190 191 6.885952 TGATTTTCATACCGAGAACCAAAA 57.114 33.333 0.00 0.00 0.00 2.44
191 192 7.461182 TGATTTTCATACCGAGAACCAAAAT 57.539 32.000 0.00 0.00 0.00 1.82
192 193 8.568676 TGATTTTCATACCGAGAACCAAAATA 57.431 30.769 0.00 0.00 0.00 1.40
193 194 9.015367 TGATTTTCATACCGAGAACCAAAATAA 57.985 29.630 0.00 0.00 0.00 1.40
194 195 9.503427 GATTTTCATACCGAGAACCAAAATAAG 57.497 33.333 0.00 0.00 0.00 1.73
195 196 8.624367 TTTTCATACCGAGAACCAAAATAAGA 57.376 30.769 0.00 0.00 0.00 2.10
196 197 8.801882 TTTCATACCGAGAACCAAAATAAGAT 57.198 30.769 0.00 0.00 0.00 2.40
197 198 7.786178 TCATACCGAGAACCAAAATAAGATG 57.214 36.000 0.00 0.00 0.00 2.90
198 199 7.561251 TCATACCGAGAACCAAAATAAGATGA 58.439 34.615 0.00 0.00 0.00 2.92
199 200 7.710907 TCATACCGAGAACCAAAATAAGATGAG 59.289 37.037 0.00 0.00 0.00 2.90
200 201 4.636206 ACCGAGAACCAAAATAAGATGAGC 59.364 41.667 0.00 0.00 0.00 4.26
201 202 4.635765 CCGAGAACCAAAATAAGATGAGCA 59.364 41.667 0.00 0.00 0.00 4.26
202 203 5.220739 CCGAGAACCAAAATAAGATGAGCAG 60.221 44.000 0.00 0.00 0.00 4.24
203 204 5.582269 CGAGAACCAAAATAAGATGAGCAGA 59.418 40.000 0.00 0.00 0.00 4.26
204 205 6.092670 CGAGAACCAAAATAAGATGAGCAGAA 59.907 38.462 0.00 0.00 0.00 3.02
205 206 7.361201 CGAGAACCAAAATAAGATGAGCAGAAA 60.361 37.037 0.00 0.00 0.00 2.52
206 207 8.358582 AGAACCAAAATAAGATGAGCAGAAAT 57.641 30.769 0.00 0.00 0.00 2.17
207 208 8.810041 AGAACCAAAATAAGATGAGCAGAAATT 58.190 29.630 0.00 0.00 0.00 1.82
217 218 8.571461 AAGATGAGCAGAAATTAATTGTGAGA 57.429 30.769 12.80 0.00 34.29 3.27
218 219 8.571461 AGATGAGCAGAAATTAATTGTGAGAA 57.429 30.769 12.80 0.95 34.29 2.87
219 220 9.017509 AGATGAGCAGAAATTAATTGTGAGAAA 57.982 29.630 12.80 0.00 34.29 2.52
220 221 8.976986 ATGAGCAGAAATTAATTGTGAGAAAC 57.023 30.769 12.80 0.00 34.29 2.78
221 222 7.370383 TGAGCAGAAATTAATTGTGAGAAACC 58.630 34.615 12.80 0.00 34.29 3.27
222 223 7.014134 TGAGCAGAAATTAATTGTGAGAAACCA 59.986 33.333 12.80 0.00 34.29 3.67
223 224 7.725251 AGCAGAAATTAATTGTGAGAAACCAA 58.275 30.769 12.80 0.00 34.29 3.67
224 225 8.203485 AGCAGAAATTAATTGTGAGAAACCAAA 58.797 29.630 12.80 0.00 34.29 3.28
225 226 8.825745 GCAGAAATTAATTGTGAGAAACCAAAA 58.174 29.630 12.80 0.00 34.29 2.44
227 228 9.030301 AGAAATTAATTGTGAGAAACCAAAACG 57.970 29.630 0.39 0.00 0.00 3.60
228 229 7.707774 AATTAATTGTGAGAAACCAAAACGG 57.292 32.000 0.00 0.00 42.50 4.44
229 230 4.993029 AATTGTGAGAAACCAAAACGGA 57.007 36.364 0.00 0.00 38.63 4.69
230 231 4.568152 ATTGTGAGAAACCAAAACGGAG 57.432 40.909 0.00 0.00 38.63 4.63
231 232 2.294074 TGTGAGAAACCAAAACGGAGG 58.706 47.619 0.00 0.00 38.63 4.30
232 233 1.607148 GTGAGAAACCAAAACGGAGGG 59.393 52.381 0.00 0.00 38.63 4.30
233 234 1.244816 GAGAAACCAAAACGGAGGGG 58.755 55.000 0.00 0.00 38.63 4.79
234 235 0.554305 AGAAACCAAAACGGAGGGGT 59.446 50.000 0.00 0.00 38.63 4.95
235 236 1.063492 AGAAACCAAAACGGAGGGGTT 60.063 47.619 0.00 0.00 45.13 4.11
236 237 1.868713 AAACCAAAACGGAGGGGTTT 58.131 45.000 9.77 9.77 45.98 3.27
237 238 1.116308 AACCAAAACGGAGGGGTTTG 58.884 50.000 0.00 0.00 40.59 2.93
238 239 1.365999 CCAAAACGGAGGGGTTTGC 59.634 57.895 0.00 0.00 39.88 3.68
239 240 1.007849 CAAAACGGAGGGGTTTGCG 60.008 57.895 0.00 0.00 39.88 4.85
240 241 2.852180 AAAACGGAGGGGTTTGCGC 61.852 57.895 0.00 0.00 39.88 6.09
241 242 4.572571 AACGGAGGGGTTTGCGCA 62.573 61.111 5.66 5.66 35.11 6.09
242 243 4.572571 ACGGAGGGGTTTGCGCAA 62.573 61.111 21.02 21.02 35.11 4.85
243 244 3.291383 CGGAGGGGTTTGCGCAAA 61.291 61.111 30.63 30.63 0.00 3.68
244 245 2.650778 GGAGGGGTTTGCGCAAAG 59.349 61.111 34.35 0.00 0.00 2.77
245 246 1.901464 GGAGGGGTTTGCGCAAAGA 60.901 57.895 34.35 13.60 0.00 2.52
246 247 1.460273 GGAGGGGTTTGCGCAAAGAA 61.460 55.000 34.35 12.77 0.00 2.52
247 248 0.603065 GAGGGGTTTGCGCAAAGAAT 59.397 50.000 34.35 20.52 0.00 2.40
248 249 1.000843 GAGGGGTTTGCGCAAAGAATT 59.999 47.619 34.35 20.42 0.00 2.17
249 250 1.416030 AGGGGTTTGCGCAAAGAATTT 59.584 42.857 34.35 16.75 40.26 1.82
250 251 2.630580 AGGGGTTTGCGCAAAGAATTTA 59.369 40.909 34.35 10.29 35.03 1.40
251 252 3.070302 AGGGGTTTGCGCAAAGAATTTAA 59.930 39.130 34.35 9.46 35.03 1.52
252 253 4.000325 GGGGTTTGCGCAAAGAATTTAAT 59.000 39.130 34.35 0.00 35.03 1.40
253 254 4.454161 GGGGTTTGCGCAAAGAATTTAATT 59.546 37.500 34.35 0.00 35.03 1.40
254 255 5.390461 GGGGTTTGCGCAAAGAATTTAATTC 60.390 40.000 34.35 18.26 35.03 2.17
255 256 5.305036 GGTTTGCGCAAAGAATTTAATTCG 58.695 37.500 34.35 2.29 43.92 3.34
256 257 4.560396 TTGCGCAAAGAATTTAATTCGC 57.440 36.364 22.78 11.66 43.92 4.70
257 258 3.569548 TGCGCAAAGAATTTAATTCGCA 58.430 36.364 8.16 15.78 43.59 5.10
258 259 3.607641 TGCGCAAAGAATTTAATTCGCAG 59.392 39.130 8.16 9.47 42.23 5.18
259 260 3.540167 GCGCAAAGAATTTAATTCGCAGC 60.540 43.478 11.43 13.92 43.92 5.25
260 261 3.853671 CGCAAAGAATTTAATTCGCAGCT 59.146 39.130 19.88 0.00 43.92 4.24
261 262 4.324402 CGCAAAGAATTTAATTCGCAGCTT 59.676 37.500 19.88 6.54 43.92 3.74
262 263 5.497597 CGCAAAGAATTTAATTCGCAGCTTC 60.498 40.000 19.88 6.83 43.92 3.86
263 264 5.497597 GCAAAGAATTTAATTCGCAGCTTCG 60.498 40.000 11.43 0.00 43.92 3.79
264 265 5.545658 AAGAATTTAATTCGCAGCTTCGA 57.454 34.783 3.78 3.78 43.92 3.71
265 266 6.305399 CAAAGAATTTAATTCGCAGCTTCGAA 59.695 34.615 22.84 22.84 44.07 3.71
266 267 6.861055 AAAGAATTTAATTCGCAGCTTCGAAA 59.139 30.769 24.23 9.07 43.55 3.46
267 268 7.061094 AAAGAATTTAATTCGCAGCTTCGAAAG 59.939 33.333 24.23 0.00 43.55 2.62
270 271 3.299050 TTCGCAGCTTCGAAAGGAA 57.701 47.368 18.78 0.00 44.30 3.36
271 272 1.588674 TTCGCAGCTTCGAAAGGAAA 58.411 45.000 18.78 0.00 44.30 3.13
272 273 1.808411 TCGCAGCTTCGAAAGGAAAT 58.192 45.000 5.84 0.00 35.31 2.17
273 274 1.732259 TCGCAGCTTCGAAAGGAAATC 59.268 47.619 5.84 0.00 35.31 2.17
274 275 1.734465 CGCAGCTTCGAAAGGAAATCT 59.266 47.619 0.00 0.00 33.34 2.40
275 276 2.160417 CGCAGCTTCGAAAGGAAATCTT 59.840 45.455 0.00 0.00 37.28 2.40
286 287 5.791336 AAAGGAAATCTTTCACCACCTTC 57.209 39.130 0.00 0.00 41.53 3.46
287 288 4.731313 AGGAAATCTTTCACCACCTTCT 57.269 40.909 5.14 0.00 38.92 2.85
288 289 4.401925 AGGAAATCTTTCACCACCTTCTG 58.598 43.478 5.14 0.00 38.92 3.02
289 290 3.057245 GGAAATCTTTCACCACCTTCTGC 60.057 47.826 5.14 0.00 38.92 4.26
290 291 2.206576 ATCTTTCACCACCTTCTGCC 57.793 50.000 0.00 0.00 0.00 4.85
291 292 0.843309 TCTTTCACCACCTTCTGCCA 59.157 50.000 0.00 0.00 0.00 4.92
292 293 1.425066 TCTTTCACCACCTTCTGCCAT 59.575 47.619 0.00 0.00 0.00 4.40
293 294 2.158475 TCTTTCACCACCTTCTGCCATT 60.158 45.455 0.00 0.00 0.00 3.16
294 295 1.909700 TTCACCACCTTCTGCCATTC 58.090 50.000 0.00 0.00 0.00 2.67
295 296 0.321564 TCACCACCTTCTGCCATTCG 60.322 55.000 0.00 0.00 0.00 3.34
296 297 1.002134 ACCACCTTCTGCCATTCGG 60.002 57.895 0.00 0.00 0.00 4.30
297 298 1.002134 CCACCTTCTGCCATTCGGT 60.002 57.895 0.00 0.00 33.28 4.69
298 299 0.251916 CCACCTTCTGCCATTCGGTA 59.748 55.000 0.00 0.00 33.28 4.02
299 300 1.339631 CCACCTTCTGCCATTCGGTAA 60.340 52.381 0.00 0.00 33.28 2.85
300 301 2.643551 CACCTTCTGCCATTCGGTAAT 58.356 47.619 0.00 0.00 33.28 1.89
301 302 3.016736 CACCTTCTGCCATTCGGTAATT 58.983 45.455 0.00 0.00 33.28 1.40
302 303 3.443681 CACCTTCTGCCATTCGGTAATTT 59.556 43.478 0.00 0.00 33.28 1.82
303 304 3.694566 ACCTTCTGCCATTCGGTAATTTC 59.305 43.478 0.00 0.00 33.28 2.17
304 305 3.694072 CCTTCTGCCATTCGGTAATTTCA 59.306 43.478 0.00 0.00 33.28 2.69
305 306 4.438744 CCTTCTGCCATTCGGTAATTTCAC 60.439 45.833 0.00 0.00 33.28 3.18
306 307 3.680490 TCTGCCATTCGGTAATTTCACA 58.320 40.909 0.00 0.00 33.28 3.58
307 308 3.438781 TCTGCCATTCGGTAATTTCACAC 59.561 43.478 0.00 0.00 33.28 3.82
308 309 3.417101 TGCCATTCGGTAATTTCACACT 58.583 40.909 0.00 0.00 33.28 3.55
309 310 3.823873 TGCCATTCGGTAATTTCACACTT 59.176 39.130 0.00 0.00 33.28 3.16
310 311 4.279671 TGCCATTCGGTAATTTCACACTTT 59.720 37.500 0.00 0.00 33.28 2.66
311 312 4.857037 GCCATTCGGTAATTTCACACTTTC 59.143 41.667 0.00 0.00 33.28 2.62
312 313 5.563867 GCCATTCGGTAATTTCACACTTTCA 60.564 40.000 0.00 0.00 33.28 2.69
313 314 6.442952 CCATTCGGTAATTTCACACTTTCAA 58.557 36.000 0.00 0.00 0.00 2.69
314 315 6.362283 CCATTCGGTAATTTCACACTTTCAAC 59.638 38.462 0.00 0.00 0.00 3.18
315 316 6.438259 TTCGGTAATTTCACACTTTCAACA 57.562 33.333 0.00 0.00 0.00 3.33
316 317 6.055231 TCGGTAATTTCACACTTTCAACAG 57.945 37.500 0.00 0.00 0.00 3.16
317 318 5.008217 TCGGTAATTTCACACTTTCAACAGG 59.992 40.000 0.00 0.00 0.00 4.00
318 319 5.008217 CGGTAATTTCACACTTTCAACAGGA 59.992 40.000 0.00 0.00 0.00 3.86
319 320 6.438763 GGTAATTTCACACTTTCAACAGGAG 58.561 40.000 0.00 0.00 0.00 3.69
320 321 6.039382 GGTAATTTCACACTTTCAACAGGAGT 59.961 38.462 0.00 0.00 0.00 3.85
321 322 6.530019 AATTTCACACTTTCAACAGGAGTT 57.470 33.333 0.00 0.00 38.88 3.01
322 323 5.560966 TTTCACACTTTCAACAGGAGTTC 57.439 39.130 0.00 0.00 35.28 3.01
323 324 3.541632 TCACACTTTCAACAGGAGTTCC 58.458 45.455 0.00 0.00 35.28 3.62
324 325 3.054728 TCACACTTTCAACAGGAGTTCCA 60.055 43.478 0.28 0.00 35.28 3.53
325 326 3.885297 CACACTTTCAACAGGAGTTCCAT 59.115 43.478 0.28 0.00 35.28 3.41
326 327 4.339247 CACACTTTCAACAGGAGTTCCATT 59.661 41.667 0.28 0.00 35.28 3.16
327 328 4.956075 ACACTTTCAACAGGAGTTCCATTT 59.044 37.500 0.28 0.00 35.28 2.32
328 329 6.039270 CACACTTTCAACAGGAGTTCCATTTA 59.961 38.462 0.28 0.00 35.28 1.40
329 330 6.777580 ACACTTTCAACAGGAGTTCCATTTAT 59.222 34.615 0.28 0.00 35.28 1.40
330 331 7.287696 ACACTTTCAACAGGAGTTCCATTTATT 59.712 33.333 0.28 0.00 35.28 1.40
331 332 8.143835 CACTTTCAACAGGAGTTCCATTTATTT 58.856 33.333 0.28 0.00 35.28 1.40
332 333 9.362151 ACTTTCAACAGGAGTTCCATTTATTTA 57.638 29.630 0.28 0.00 35.28 1.40
381 382 2.279918 GTGTTGGCACGTCGGTCT 60.280 61.111 0.00 0.00 35.75 3.85
384 385 2.279851 TTGGCACGTCGGTCTGTG 60.280 61.111 0.00 0.00 39.10 3.66
388 389 2.258591 CACGTCGGTCTGTGGGAG 59.741 66.667 0.00 0.00 32.47 4.30
402 407 4.436998 GGAGGACCCGTGACGCTG 62.437 72.222 0.00 0.00 0.00 5.18
406 411 2.652530 GACCCGTGACGCTGGTAA 59.347 61.111 5.92 0.00 30.97 2.85
407 412 1.445582 GACCCGTGACGCTGGTAAG 60.446 63.158 5.92 0.00 30.97 2.34
410 415 0.457337 CCCGTGACGCTGGTAAGTAC 60.457 60.000 0.00 0.00 0.00 2.73
411 416 0.241749 CCGTGACGCTGGTAAGTACA 59.758 55.000 0.00 0.00 0.00 2.90
412 417 1.334054 CGTGACGCTGGTAAGTACAC 58.666 55.000 0.00 0.00 0.00 2.90
423 428 2.414138 GGTAAGTACACGCCACATTCAC 59.586 50.000 0.00 0.00 0.00 3.18
508 534 2.803285 AATGATAGGGGAGAGAGGCA 57.197 50.000 0.00 0.00 0.00 4.75
525 551 3.436700 GGCAACTTAGCAACAAACAGT 57.563 42.857 0.00 0.00 35.83 3.55
533 559 0.455972 GCAACAAACAGTGTGCGTGT 60.456 50.000 0.00 0.00 40.60 4.49
628 673 0.965866 TTCCAGTCTCTCCGCACGAT 60.966 55.000 0.00 0.00 0.00 3.73
745 820 8.441312 TTTATTACCACCTCGTTTAATCATCC 57.559 34.615 0.00 0.00 0.00 3.51
795 885 2.677289 CCAGATCCAGCAGGGCACT 61.677 63.158 0.00 0.00 36.21 4.40
796 886 1.153208 CAGATCCAGCAGGGCACTC 60.153 63.158 0.00 0.00 36.21 3.51
825 915 4.214332 ACGAGAAAGTTTCAAAGCATCTCC 59.786 41.667 17.65 0.00 0.00 3.71
831 921 3.586618 AGTTTCAAAGCATCTCCCTCTCT 59.413 43.478 0.00 0.00 0.00 3.10
911 1006 2.654877 CCAGCAAGCAAGCAAGGG 59.345 61.111 3.19 0.00 36.85 3.95
913 1008 1.585006 CAGCAAGCAAGCAAGGGAG 59.415 57.895 3.19 0.00 36.85 4.30
915 1010 2.564975 CAAGCAAGCAAGGGAGCG 59.435 61.111 0.00 0.00 40.15 5.03
916 1011 2.674380 AAGCAAGCAAGGGAGCGG 60.674 61.111 0.00 0.00 40.15 5.52
945 1040 0.318120 GCTGCTCCTCCAGATCTAGC 59.682 60.000 7.38 7.38 34.77 3.42
948 1043 1.531739 GCTCCTCCAGATCTAGCCGG 61.532 65.000 0.00 0.00 0.00 6.13
951 1046 1.910772 CTCCAGATCTAGCCGGGGG 60.911 68.421 2.18 0.00 0.00 5.40
952 1047 2.201490 CCAGATCTAGCCGGGGGA 59.799 66.667 2.18 0.00 0.00 4.81
964 1059 4.040198 GGGGGAGGAGGAGGGGTT 62.040 72.222 0.00 0.00 0.00 4.11
965 1060 2.367107 GGGGAGGAGGAGGGGTTC 60.367 72.222 0.00 0.00 0.00 3.62
967 1062 2.039137 GGAGGAGGAGGGGTTCGT 59.961 66.667 0.00 0.00 0.00 3.85
968 1063 1.309006 GGAGGAGGAGGGGTTCGTA 59.691 63.158 0.00 0.00 0.00 3.43
969 1064 0.756070 GGAGGAGGAGGGGTTCGTAG 60.756 65.000 0.00 0.00 0.00 3.51
970 1065 0.756070 GAGGAGGAGGGGTTCGTAGG 60.756 65.000 0.00 0.00 0.00 3.18
971 1066 1.001376 GGAGGAGGGGTTCGTAGGT 59.999 63.158 0.00 0.00 0.00 3.08
1119 1214 1.227380 GGCCAGATACTGCTCCACG 60.227 63.158 0.00 0.00 0.00 4.94
1135 1230 1.985662 ACGCCCTTCGGTATGTCCA 60.986 57.895 0.00 0.00 43.86 4.02
1150 1247 6.407074 CGGTATGTCCACTATCTTTTTCCTCT 60.407 42.308 0.00 0.00 35.57 3.69
1168 1265 3.843619 CCTCTTTCCCCTTCTCTTCTCTT 59.156 47.826 0.00 0.00 0.00 2.85
1171 1268 4.660771 TCTTTCCCCTTCTCTTCTCTTTGT 59.339 41.667 0.00 0.00 0.00 2.83
1172 1269 4.357918 TTCCCCTTCTCTTCTCTTTGTG 57.642 45.455 0.00 0.00 0.00 3.33
1175 1272 3.326297 CCCCTTCTCTTCTCTTTGTGTCT 59.674 47.826 0.00 0.00 0.00 3.41
1176 1273 4.314121 CCCTTCTCTTCTCTTTGTGTCTG 58.686 47.826 0.00 0.00 0.00 3.51
1177 1274 4.039730 CCCTTCTCTTCTCTTTGTGTCTGA 59.960 45.833 0.00 0.00 0.00 3.27
1179 1276 4.250116 TCTCTTCTCTTTGTGTCTGAGC 57.750 45.455 0.00 0.00 0.00 4.26
1181 1278 5.073428 TCTCTTCTCTTTGTGTCTGAGCTA 58.927 41.667 0.00 0.00 0.00 3.32
1182 1279 5.182950 TCTCTTCTCTTTGTGTCTGAGCTAG 59.817 44.000 0.00 0.00 0.00 3.42
1183 1280 3.584406 TCTCTTTGTGTCTGAGCTAGC 57.416 47.619 6.62 6.62 0.00 3.42
1187 1294 0.610174 TTGTGTCTGAGCTAGCTGGG 59.390 55.000 24.99 14.34 0.00 4.45
1226 1333 2.163211 GAGAGCTTGGATGTTTCTTGGC 59.837 50.000 0.00 0.00 0.00 4.52
1227 1334 1.888512 GAGCTTGGATGTTTCTTGGCA 59.111 47.619 0.00 0.00 0.00 4.92
1304 1412 4.517703 GAGACCGACGACGAGCCG 62.518 72.222 9.28 1.84 42.66 5.52
1336 1444 3.374402 CACGGTCGGAGGTGAGCT 61.374 66.667 3.66 0.00 36.25 4.09
1337 1445 3.374402 ACGGTCGGAGGTGAGCTG 61.374 66.667 0.00 0.00 34.27 4.24
1338 1446 4.803426 CGGTCGGAGGTGAGCTGC 62.803 72.222 0.00 0.00 34.27 5.25
1340 1448 3.386237 GTCGGAGGTGAGCTGCCT 61.386 66.667 6.16 6.16 39.42 4.75
1380 1512 0.241481 CGGAGCTACCTAGAATCGGC 59.759 60.000 0.00 0.00 36.31 5.54
1381 1513 0.604073 GGAGCTACCTAGAATCGGCC 59.396 60.000 0.00 0.00 35.41 6.13
1384 1516 0.889306 GCTACCTAGAATCGGCCGAT 59.111 55.000 34.60 34.60 36.23 4.18
1415 1547 3.181469 TGGGGACGAAATGTATGTAGAGC 60.181 47.826 0.00 0.00 0.00 4.09
1419 1551 4.084328 GGACGAAATGTATGTAGAGCATGC 60.084 45.833 10.51 10.51 40.07 4.06
1432 1564 3.992636 GCATGCTGCTCAAGACTTC 57.007 52.632 11.37 0.00 40.96 3.01
1433 1565 0.450983 GCATGCTGCTCAAGACTTCC 59.549 55.000 11.37 0.00 40.96 3.46
1434 1566 1.949547 GCATGCTGCTCAAGACTTCCT 60.950 52.381 11.37 0.00 40.96 3.36
1435 1567 2.434428 CATGCTGCTCAAGACTTCCTT 58.566 47.619 0.00 0.00 34.91 3.36
1438 1570 3.290710 TGCTGCTCAAGACTTCCTTTTT 58.709 40.909 0.00 0.00 31.42 1.94
1446 1578 6.694844 GCTCAAGACTTCCTTTTTCTTCTTTG 59.305 38.462 0.00 0.00 31.42 2.77
1460 1592 4.792068 TCTTCTTTGTTGATTGGTCAGGT 58.208 39.130 0.00 0.00 35.39 4.00
1463 1595 3.563808 TCTTTGTTGATTGGTCAGGTTCG 59.436 43.478 0.00 0.00 35.39 3.95
1469 1601 1.278127 GATTGGTCAGGTTCGGAGGAA 59.722 52.381 0.00 0.00 0.00 3.36
1472 1604 1.196012 GGTCAGGTTCGGAGGAAGAT 58.804 55.000 0.00 0.00 31.49 2.40
1474 1606 1.550976 GTCAGGTTCGGAGGAAGATGT 59.449 52.381 0.00 0.00 31.49 3.06
1493 1625 0.325671 TGGAGGAGGATGTGGAGGAC 60.326 60.000 0.00 0.00 0.00 3.85
1598 1730 5.932027 AAAAGGATAAGGATAAGGGGAGG 57.068 43.478 0.00 0.00 0.00 4.30
2799 2976 1.684248 CCCCGGTCCGGTAGATATAGG 60.684 61.905 28.39 15.76 46.80 2.57
2800 2977 1.005215 CCCGGTCCGGTAGATATAGGT 59.995 57.143 28.39 0.00 46.80 3.08
2801 2978 2.363683 CCGGTCCGGTAGATATAGGTC 58.636 57.143 23.02 0.00 42.73 3.85
2802 2979 2.363683 CGGTCCGGTAGATATAGGTCC 58.636 57.143 2.34 0.00 0.00 4.46
2841 3018 4.447989 TGCTCTGCTCTGCTCCGC 62.448 66.667 0.00 0.00 0.00 5.54
2842 3019 4.146075 GCTCTGCTCTGCTCCGCT 62.146 66.667 0.00 0.00 0.00 5.52
2843 3020 2.104729 CTCTGCTCTGCTCCGCTC 59.895 66.667 0.00 0.00 0.00 5.03
2844 3021 3.429080 CTCTGCTCTGCTCCGCTCC 62.429 68.421 0.00 0.00 0.00 4.70
2845 3022 4.869440 CTGCTCTGCTCCGCTCCG 62.869 72.222 0.00 0.00 0.00 4.63
2899 3076 9.844257 TCTTGATTTCTTCTTCTTCTTTCTTCT 57.156 29.630 0.00 0.00 0.00 2.85
2978 3159 4.326826 ACATGTGGTTACAGAGGATGTTG 58.673 43.478 0.00 0.00 39.96 3.33
2979 3160 2.778299 TGTGGTTACAGAGGATGTTGC 58.222 47.619 0.00 0.00 39.96 4.17
2980 3161 2.371841 TGTGGTTACAGAGGATGTTGCT 59.628 45.455 0.00 0.00 39.96 3.91
2982 3163 3.437049 GTGGTTACAGAGGATGTTGCTTC 59.563 47.826 0.00 0.00 39.96 3.86
2985 3169 5.045942 TGGTTACAGAGGATGTTGCTTCATA 60.046 40.000 0.00 0.00 39.96 2.15
3055 3242 8.854614 AAATATCAAGAACATATAGCTCCACC 57.145 34.615 0.00 0.00 0.00 4.61
3122 3309 2.874014 TGAATCCATGGCAAGAACACA 58.126 42.857 6.96 0.00 0.00 3.72
3153 3340 2.840203 ATCTTCCCTCCCTTCGCCCA 62.840 60.000 0.00 0.00 0.00 5.36
3201 3390 0.703488 TCAGAATCCATGGGTTGGCA 59.297 50.000 16.99 0.00 46.01 4.92
3222 3415 1.522580 GGAGAAGCTCGGTCATGGC 60.523 63.158 0.00 0.00 0.00 4.40
3293 3486 4.342378 CCAGCTAGCTGATAGGTTTGTCTA 59.658 45.833 40.03 0.00 46.30 2.59
3299 3492 3.181485 GCTGATAGGTTTGTCTAGCTCGT 60.181 47.826 0.00 0.00 0.00 4.18
3301 3494 4.744570 TGATAGGTTTGTCTAGCTCGTTG 58.255 43.478 0.00 0.00 0.00 4.10
3303 3496 0.796927 GGTTTGTCTAGCTCGTTGGC 59.203 55.000 0.00 0.00 0.00 4.52
3304 3497 1.508632 GTTTGTCTAGCTCGTTGGCA 58.491 50.000 0.00 0.00 34.17 4.92
3306 3499 0.670546 TTGTCTAGCTCGTTGGCAGC 60.671 55.000 0.00 0.00 37.12 5.25
3347 3553 0.817654 TTCCGTCAGCTGATCGATGT 59.182 50.000 28.48 0.00 0.00 3.06
3348 3554 0.101219 TCCGTCAGCTGATCGATGTG 59.899 55.000 28.48 17.30 0.00 3.21
3349 3555 0.179127 CCGTCAGCTGATCGATGTGT 60.179 55.000 28.48 0.00 0.00 3.72
3369 3575 0.671251 TGTTGGTTGATTGTTCGGCC 59.329 50.000 0.00 0.00 0.00 6.13
3372 3578 1.212751 GGTTGATTGTTCGGCCAGC 59.787 57.895 2.24 0.00 0.00 4.85
3389 3602 3.552890 GCCAGCGGAAAAGAAATCAAAGT 60.553 43.478 0.00 0.00 0.00 2.66
3397 3610 5.237127 GGAAAAGAAATCAAAGTTTGGCTGG 59.763 40.000 15.47 0.00 0.00 4.85
3398 3611 5.357742 AAAGAAATCAAAGTTTGGCTGGT 57.642 34.783 15.47 0.00 0.00 4.00
3399 3612 5.357742 AAGAAATCAAAGTTTGGCTGGTT 57.642 34.783 15.47 3.38 0.00 3.67
3400 3613 4.948847 AGAAATCAAAGTTTGGCTGGTTC 58.051 39.130 15.47 11.12 0.00 3.62
3401 3614 3.751479 AATCAAAGTTTGGCTGGTTCC 57.249 42.857 15.47 0.00 0.00 3.62
3465 3678 1.608717 CTGCCAACTCCGAGCTACCT 61.609 60.000 0.00 0.00 0.00 3.08
3550 3763 0.526662 TTCGGCGGTCTTCTTCTCTC 59.473 55.000 7.21 0.00 0.00 3.20
3552 3765 1.518302 GGCGGTCTTCTTCTCTCCC 59.482 63.158 0.00 0.00 0.00 4.30
3556 3769 1.903183 CGGTCTTCTTCTCTCCCCTTT 59.097 52.381 0.00 0.00 0.00 3.11
3557 3770 2.093921 CGGTCTTCTTCTCTCCCCTTTC 60.094 54.545 0.00 0.00 0.00 2.62
3558 3771 3.178046 GGTCTTCTTCTCTCCCCTTTCT 58.822 50.000 0.00 0.00 0.00 2.52
3561 3774 5.242434 GTCTTCTTCTCTCCCCTTTCTTTC 58.758 45.833 0.00 0.00 0.00 2.62
3563 3776 3.598264 TCTTCTCTCCCCTTTCTTTCCA 58.402 45.455 0.00 0.00 0.00 3.53
3564 3777 3.584848 TCTTCTCTCCCCTTTCTTTCCAG 59.415 47.826 0.00 0.00 0.00 3.86
3570 3783 0.332972 CCCTTTCTTTCCAGGGGGAG 59.667 60.000 0.00 0.00 45.75 4.30
3588 3801 3.430862 GAAATGTCAGCGGCGGCA 61.431 61.111 19.21 2.01 43.41 5.69
3609 3822 4.773117 GTGTCGCCGTCCGGTCTC 62.773 72.222 7.66 0.00 37.59 3.36
3611 3824 3.823330 GTCGCCGTCCGGTCTCAT 61.823 66.667 7.66 0.00 37.59 2.90
3612 3825 3.066190 TCGCCGTCCGGTCTCATT 61.066 61.111 7.66 0.00 37.59 2.57
3613 3826 1.750018 TCGCCGTCCGGTCTCATTA 60.750 57.895 7.66 0.00 37.59 1.90
3614 3827 1.105167 TCGCCGTCCGGTCTCATTAT 61.105 55.000 7.66 0.00 37.59 1.28
3615 3828 0.249322 CGCCGTCCGGTCTCATTATT 60.249 55.000 7.66 0.00 37.65 1.40
3616 3829 1.805120 CGCCGTCCGGTCTCATTATTT 60.805 52.381 7.66 0.00 37.65 1.40
3617 3830 2.285977 GCCGTCCGGTCTCATTATTTT 58.714 47.619 7.66 0.00 37.65 1.82
3618 3831 2.681344 GCCGTCCGGTCTCATTATTTTT 59.319 45.455 7.66 0.00 37.65 1.94
3619 3832 3.242641 GCCGTCCGGTCTCATTATTTTTC 60.243 47.826 7.66 0.00 37.65 2.29
3620 3833 4.189231 CCGTCCGGTCTCATTATTTTTCT 58.811 43.478 0.00 0.00 0.00 2.52
3621 3834 4.634443 CCGTCCGGTCTCATTATTTTTCTT 59.366 41.667 0.00 0.00 0.00 2.52
3622 3835 5.220605 CCGTCCGGTCTCATTATTTTTCTTC 60.221 44.000 0.00 0.00 0.00 2.87
3642 3855 0.591170 CACATTTCGCCGTCTGGTTT 59.409 50.000 0.00 0.00 37.67 3.27
3643 3856 1.001815 CACATTTCGCCGTCTGGTTTT 60.002 47.619 0.00 0.00 37.67 2.43
3649 3897 0.600255 CGCCGTCTGGTTTTGAGACT 60.600 55.000 0.00 0.00 38.17 3.24
3677 3925 3.380479 TTCAAGGAGTATATTCGCGGG 57.620 47.619 6.13 0.00 0.00 6.13
3694 3942 1.664873 GGGCGGACCACTTTAATCTC 58.335 55.000 0.00 0.00 39.85 2.75
3728 3976 3.948473 TGAAACTTGTTGACCGGATTGAA 59.052 39.130 9.46 0.00 0.00 2.69
3744 3992 8.364142 ACCGGATTGAAAATTAACTTTCATGAA 58.636 29.630 9.46 3.38 43.12 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.003068 GTGCTTCGGATCTGAATGAATGG 59.997 47.826 17.27 6.06 0.00 3.16
1 2 3.003068 GGTGCTTCGGATCTGAATGAATG 59.997 47.826 17.27 6.76 0.00 2.67
3 4 2.632377 GGTGCTTCGGATCTGAATGAA 58.368 47.619 17.27 4.15 0.00 2.57
4 5 1.134401 GGGTGCTTCGGATCTGAATGA 60.134 52.381 17.27 4.52 0.00 2.57
5 6 1.303309 GGGTGCTTCGGATCTGAATG 58.697 55.000 17.27 12.16 0.00 2.67
6 7 0.911769 TGGGTGCTTCGGATCTGAAT 59.088 50.000 17.27 0.00 0.00 2.57
9 10 0.321564 TGTTGGGTGCTTCGGATCTG 60.322 55.000 0.00 0.00 0.00 2.90
10 11 0.321653 GTGTTGGGTGCTTCGGATCT 60.322 55.000 0.00 0.00 0.00 2.75
11 12 1.305930 GGTGTTGGGTGCTTCGGATC 61.306 60.000 0.00 0.00 0.00 3.36
12 13 1.303317 GGTGTTGGGTGCTTCGGAT 60.303 57.895 0.00 0.00 0.00 4.18
14 15 2.203280 TGGTGTTGGGTGCTTCGG 60.203 61.111 0.00 0.00 0.00 4.30
15 16 1.227823 TCTGGTGTTGGGTGCTTCG 60.228 57.895 0.00 0.00 0.00 3.79
16 17 1.518903 GCTCTGGTGTTGGGTGCTTC 61.519 60.000 0.00 0.00 0.00 3.86
19 20 1.968540 GAGCTCTGGTGTTGGGTGC 60.969 63.158 6.43 0.00 0.00 5.01
20 21 1.669115 CGAGCTCTGGTGTTGGGTG 60.669 63.158 12.85 0.00 0.00 4.61
21 22 2.100879 GACGAGCTCTGGTGTTGGGT 62.101 60.000 12.85 0.00 0.00 4.51
22 23 1.374758 GACGAGCTCTGGTGTTGGG 60.375 63.158 12.85 0.00 0.00 4.12
23 24 1.734477 CGACGAGCTCTGGTGTTGG 60.734 63.158 12.85 0.00 0.00 3.77
24 25 1.004277 GACGACGAGCTCTGGTGTTG 61.004 60.000 12.85 8.54 0.00 3.33
25 26 1.286260 GACGACGAGCTCTGGTGTT 59.714 57.895 12.85 0.00 0.00 3.32
27 28 2.202362 CGACGACGAGCTCTGGTG 60.202 66.667 12.85 0.00 42.66 4.17
28 29 3.432588 CCGACGACGAGCTCTGGT 61.433 66.667 12.85 6.52 42.66 4.00
29 30 4.180946 CCCGACGACGAGCTCTGG 62.181 72.222 12.85 3.05 42.66 3.86
30 31 4.838486 GCCCGACGACGAGCTCTG 62.838 72.222 12.85 8.06 39.99 3.35
32 33 4.194720 ATGCCCGACGACGAGCTC 62.195 66.667 14.92 2.73 43.36 4.09
33 34 4.498520 CATGCCCGACGACGAGCT 62.499 66.667 14.92 0.00 43.36 4.09
34 35 3.774959 ATCATGCCCGACGACGAGC 62.775 63.158 9.28 8.01 43.26 5.03
35 36 1.946156 CATCATGCCCGACGACGAG 60.946 63.158 9.28 0.00 42.66 4.18
36 37 2.104132 CATCATGCCCGACGACGA 59.896 61.111 9.28 0.00 42.66 4.20
37 38 1.946156 CTCATCATGCCCGACGACG 60.946 63.158 0.00 0.00 39.43 5.12
38 39 0.179111 TTCTCATCATGCCCGACGAC 60.179 55.000 0.00 0.00 0.00 4.34
39 40 0.103026 CTTCTCATCATGCCCGACGA 59.897 55.000 0.00 0.00 0.00 4.20
40 41 1.493950 GCTTCTCATCATGCCCGACG 61.494 60.000 0.00 0.00 0.00 5.12
41 42 1.162800 GGCTTCTCATCATGCCCGAC 61.163 60.000 0.00 0.00 39.49 4.79
42 43 1.146930 GGCTTCTCATCATGCCCGA 59.853 57.895 0.00 0.00 39.49 5.14
43 44 0.536687 ATGGCTTCTCATCATGCCCG 60.537 55.000 0.00 0.00 44.32 6.13
44 45 0.959553 CATGGCTTCTCATCATGCCC 59.040 55.000 0.00 0.00 44.32 5.36
45 46 1.607628 GTCATGGCTTCTCATCATGCC 59.392 52.381 0.00 0.00 45.10 4.40
46 47 1.607628 GGTCATGGCTTCTCATCATGC 59.392 52.381 0.00 0.00 38.41 4.06
47 48 3.139850 GAGGTCATGGCTTCTCATCATG 58.860 50.000 1.54 0.00 39.49 3.07
48 49 2.775960 TGAGGTCATGGCTTCTCATCAT 59.224 45.455 11.03 0.00 32.10 2.45
49 50 2.093288 GTGAGGTCATGGCTTCTCATCA 60.093 50.000 11.03 0.00 38.34 3.07
50 51 2.559440 GTGAGGTCATGGCTTCTCATC 58.441 52.381 11.03 1.76 38.34 2.92
51 52 1.211457 GGTGAGGTCATGGCTTCTCAT 59.789 52.381 11.03 0.00 38.34 2.90
52 53 0.615331 GGTGAGGTCATGGCTTCTCA 59.385 55.000 11.03 6.58 34.34 3.27
53 54 0.460987 CGGTGAGGTCATGGCTTCTC 60.461 60.000 11.03 6.96 0.00 2.87
54 55 1.599047 CGGTGAGGTCATGGCTTCT 59.401 57.895 11.03 0.00 0.00 2.85
55 56 2.109126 GCGGTGAGGTCATGGCTTC 61.109 63.158 1.83 1.83 0.00 3.86
56 57 2.045926 GCGGTGAGGTCATGGCTT 60.046 61.111 0.00 0.00 0.00 4.35
57 58 3.005539 AGCGGTGAGGTCATGGCT 61.006 61.111 0.00 2.82 34.09 4.75
58 59 2.512515 GAGCGGTGAGGTCATGGC 60.513 66.667 0.00 0.00 46.08 4.40
72 73 3.909258 TTTGTCGTCTCGCCGGAGC 62.909 63.158 5.05 0.00 40.26 4.70
73 74 1.801913 CTTTGTCGTCTCGCCGGAG 60.802 63.158 5.05 0.00 41.89 4.63
74 75 2.257371 CTTTGTCGTCTCGCCGGA 59.743 61.111 5.05 0.00 0.00 5.14
75 76 2.809601 CCTTTGTCGTCTCGCCGG 60.810 66.667 0.00 0.00 0.00 6.13
76 77 1.219522 AAACCTTTGTCGTCTCGCCG 61.220 55.000 0.00 0.00 0.00 6.46
77 78 1.458445 GTAAACCTTTGTCGTCTCGCC 59.542 52.381 0.00 0.00 0.00 5.54
78 79 1.123756 CGTAAACCTTTGTCGTCTCGC 59.876 52.381 0.00 0.00 0.00 5.03
79 80 1.717645 CCGTAAACCTTTGTCGTCTCG 59.282 52.381 0.00 0.00 0.00 4.04
80 81 2.747436 ACCGTAAACCTTTGTCGTCTC 58.253 47.619 0.00 0.00 0.00 3.36
81 82 2.896745 ACCGTAAACCTTTGTCGTCT 57.103 45.000 0.00 0.00 0.00 4.18
82 83 3.900941 TCTACCGTAAACCTTTGTCGTC 58.099 45.455 0.00 0.00 0.00 4.20
83 84 4.320608 TTCTACCGTAAACCTTTGTCGT 57.679 40.909 0.00 0.00 0.00 4.34
84 85 5.010249 GTTTCTACCGTAAACCTTTGTCG 57.990 43.478 0.00 0.00 31.94 4.35
98 99 5.873164 ACACTTGATTACATCGGTTTCTACC 59.127 40.000 0.00 0.00 41.33 3.18
99 100 6.963049 ACACTTGATTACATCGGTTTCTAC 57.037 37.500 0.00 0.00 0.00 2.59
100 101 6.370442 CCAACACTTGATTACATCGGTTTCTA 59.630 38.462 0.00 0.00 0.00 2.10
101 102 5.181245 CCAACACTTGATTACATCGGTTTCT 59.819 40.000 0.00 0.00 0.00 2.52
102 103 5.390613 CCAACACTTGATTACATCGGTTTC 58.609 41.667 0.00 0.00 0.00 2.78
103 104 4.217550 CCCAACACTTGATTACATCGGTTT 59.782 41.667 0.00 0.00 0.00 3.27
104 105 3.756434 CCCAACACTTGATTACATCGGTT 59.244 43.478 0.00 0.00 0.00 4.44
105 106 3.343617 CCCAACACTTGATTACATCGGT 58.656 45.455 0.00 0.00 0.00 4.69
106 107 2.097466 GCCCAACACTTGATTACATCGG 59.903 50.000 0.00 0.00 0.00 4.18
107 108 2.097466 GGCCCAACACTTGATTACATCG 59.903 50.000 0.00 0.00 0.00 3.84
108 109 3.088532 TGGCCCAACACTTGATTACATC 58.911 45.455 0.00 0.00 0.00 3.06
109 110 3.168035 TGGCCCAACACTTGATTACAT 57.832 42.857 0.00 0.00 0.00 2.29
110 111 2.666272 TGGCCCAACACTTGATTACA 57.334 45.000 0.00 0.00 0.00 2.41
111 112 2.825532 ACATGGCCCAACACTTGATTAC 59.174 45.455 0.00 0.00 0.00 1.89
112 113 3.088532 GACATGGCCCAACACTTGATTA 58.911 45.455 0.00 0.00 0.00 1.75
113 114 1.895131 GACATGGCCCAACACTTGATT 59.105 47.619 0.00 0.00 0.00 2.57
114 115 1.076024 AGACATGGCCCAACACTTGAT 59.924 47.619 0.00 0.00 0.00 2.57
115 116 0.478072 AGACATGGCCCAACACTTGA 59.522 50.000 0.00 0.00 0.00 3.02
116 117 1.270550 GAAGACATGGCCCAACACTTG 59.729 52.381 0.00 0.00 0.00 3.16
117 118 1.133513 TGAAGACATGGCCCAACACTT 60.134 47.619 0.00 0.00 0.00 3.16
118 119 0.478072 TGAAGACATGGCCCAACACT 59.522 50.000 0.00 0.00 0.00 3.55
119 120 1.327303 TTGAAGACATGGCCCAACAC 58.673 50.000 0.00 0.00 0.00 3.32
120 121 2.079170 TTTGAAGACATGGCCCAACA 57.921 45.000 0.00 0.00 0.00 3.33
121 122 2.932187 GCATTTGAAGACATGGCCCAAC 60.932 50.000 0.00 0.00 0.00 3.77
122 123 1.275856 GCATTTGAAGACATGGCCCAA 59.724 47.619 0.00 0.00 0.00 4.12
123 124 0.896923 GCATTTGAAGACATGGCCCA 59.103 50.000 0.00 0.00 0.00 5.36
124 125 0.896923 TGCATTTGAAGACATGGCCC 59.103 50.000 0.00 0.00 0.00 5.80
125 126 1.547372 ACTGCATTTGAAGACATGGCC 59.453 47.619 0.00 0.00 0.00 5.36
126 127 3.191162 TGTACTGCATTTGAAGACATGGC 59.809 43.478 0.00 0.00 0.00 4.40
127 128 4.456911 ACTGTACTGCATTTGAAGACATGG 59.543 41.667 0.00 0.00 0.00 3.66
128 129 5.618056 ACTGTACTGCATTTGAAGACATG 57.382 39.130 0.00 0.00 0.00 3.21
129 130 5.643777 GGTACTGTACTGCATTTGAAGACAT 59.356 40.000 16.79 0.00 0.00 3.06
130 131 4.994852 GGTACTGTACTGCATTTGAAGACA 59.005 41.667 16.79 0.00 0.00 3.41
131 132 5.238583 AGGTACTGTACTGCATTTGAAGAC 58.761 41.667 16.79 0.00 37.18 3.01
132 133 5.483685 AGGTACTGTACTGCATTTGAAGA 57.516 39.130 16.79 0.00 37.18 2.87
133 134 5.700832 TGAAGGTACTGTACTGCATTTGAAG 59.299 40.000 16.79 0.00 40.86 3.02
134 135 5.616270 TGAAGGTACTGTACTGCATTTGAA 58.384 37.500 16.79 0.00 40.86 2.69
135 136 5.222079 TGAAGGTACTGTACTGCATTTGA 57.778 39.130 16.79 0.00 40.86 2.69
136 137 5.674569 GCATGAAGGTACTGTACTGCATTTG 60.675 44.000 18.54 11.20 40.86 2.32
137 138 4.396166 GCATGAAGGTACTGTACTGCATTT 59.604 41.667 18.54 7.62 40.86 2.32
138 139 3.941483 GCATGAAGGTACTGTACTGCATT 59.059 43.478 18.54 9.75 40.86 3.56
139 140 3.535561 GCATGAAGGTACTGTACTGCAT 58.464 45.455 18.54 15.08 40.86 3.96
140 141 2.673893 CGCATGAAGGTACTGTACTGCA 60.674 50.000 21.38 15.50 40.86 4.41
141 142 1.927174 CGCATGAAGGTACTGTACTGC 59.073 52.381 16.79 15.93 40.86 4.40
142 143 3.232213 ACGCATGAAGGTACTGTACTG 57.768 47.619 16.79 8.51 40.86 2.74
143 144 3.585862 CAACGCATGAAGGTACTGTACT 58.414 45.455 16.79 0.00 40.86 2.73
144 145 2.671396 CCAACGCATGAAGGTACTGTAC 59.329 50.000 9.46 9.46 40.86 2.90
145 146 2.300723 ACCAACGCATGAAGGTACTGTA 59.699 45.455 0.00 0.00 40.86 2.74
146 147 1.071699 ACCAACGCATGAAGGTACTGT 59.928 47.619 0.00 0.00 40.86 3.55
147 148 1.808411 ACCAACGCATGAAGGTACTG 58.192 50.000 0.00 0.00 40.86 2.74
149 150 2.147958 TCAACCAACGCATGAAGGTAC 58.852 47.619 0.00 0.00 33.15 3.34
150 151 2.552599 TCAACCAACGCATGAAGGTA 57.447 45.000 0.00 0.00 33.15 3.08
151 152 1.909700 ATCAACCAACGCATGAAGGT 58.090 45.000 0.00 0.00 35.47 3.50
152 153 3.302365 AAATCAACCAACGCATGAAGG 57.698 42.857 0.00 0.00 0.00 3.46
153 154 4.297510 TGAAAATCAACCAACGCATGAAG 58.702 39.130 0.00 0.00 0.00 3.02
154 155 4.313277 TGAAAATCAACCAACGCATGAA 57.687 36.364 0.00 0.00 0.00 2.57
155 156 3.998099 TGAAAATCAACCAACGCATGA 57.002 38.095 0.00 0.00 0.00 3.07
156 157 4.562394 GGTATGAAAATCAACCAACGCATG 59.438 41.667 0.00 0.00 31.97 4.06
157 158 4.674101 CGGTATGAAAATCAACCAACGCAT 60.674 41.667 10.28 0.00 31.49 4.73
158 159 3.365465 CGGTATGAAAATCAACCAACGCA 60.365 43.478 10.28 0.00 31.49 5.24
159 160 3.120130 TCGGTATGAAAATCAACCAACGC 60.120 43.478 10.28 0.00 31.49 4.84
160 161 4.390603 TCTCGGTATGAAAATCAACCAACG 59.609 41.667 10.28 0.00 31.49 4.10
161 162 5.873179 TCTCGGTATGAAAATCAACCAAC 57.127 39.130 10.28 0.00 31.49 3.77
162 163 5.182380 GGTTCTCGGTATGAAAATCAACCAA 59.818 40.000 0.00 0.00 31.49 3.67
163 164 4.698304 GGTTCTCGGTATGAAAATCAACCA 59.302 41.667 0.00 0.00 31.49 3.67
164 165 4.698304 TGGTTCTCGGTATGAAAATCAACC 59.302 41.667 0.00 0.00 32.88 3.77
165 166 5.873179 TGGTTCTCGGTATGAAAATCAAC 57.127 39.130 0.00 0.00 0.00 3.18
166 167 6.885952 TTTGGTTCTCGGTATGAAAATCAA 57.114 33.333 0.00 0.00 0.00 2.57
167 168 6.885952 TTTTGGTTCTCGGTATGAAAATCA 57.114 33.333 0.00 0.00 0.00 2.57
168 169 9.503427 CTTATTTTGGTTCTCGGTATGAAAATC 57.497 33.333 0.00 0.00 0.00 2.17
169 170 9.238368 TCTTATTTTGGTTCTCGGTATGAAAAT 57.762 29.630 0.00 0.00 0.00 1.82
170 171 8.624367 TCTTATTTTGGTTCTCGGTATGAAAA 57.376 30.769 0.00 0.00 0.00 2.29
171 172 8.673711 CATCTTATTTTGGTTCTCGGTATGAAA 58.326 33.333 0.00 0.00 0.00 2.69
172 173 8.044309 TCATCTTATTTTGGTTCTCGGTATGAA 58.956 33.333 0.00 0.00 0.00 2.57
173 174 7.561251 TCATCTTATTTTGGTTCTCGGTATGA 58.439 34.615 0.00 0.00 0.00 2.15
174 175 7.519008 GCTCATCTTATTTTGGTTCTCGGTATG 60.519 40.741 0.00 0.00 0.00 2.39
175 176 6.483640 GCTCATCTTATTTTGGTTCTCGGTAT 59.516 38.462 0.00 0.00 0.00 2.73
176 177 5.815740 GCTCATCTTATTTTGGTTCTCGGTA 59.184 40.000 0.00 0.00 0.00 4.02
177 178 4.636206 GCTCATCTTATTTTGGTTCTCGGT 59.364 41.667 0.00 0.00 0.00 4.69
178 179 4.635765 TGCTCATCTTATTTTGGTTCTCGG 59.364 41.667 0.00 0.00 0.00 4.63
179 180 5.582269 TCTGCTCATCTTATTTTGGTTCTCG 59.418 40.000 0.00 0.00 0.00 4.04
180 181 6.992063 TCTGCTCATCTTATTTTGGTTCTC 57.008 37.500 0.00 0.00 0.00 2.87
181 182 7.765695 TTTCTGCTCATCTTATTTTGGTTCT 57.234 32.000 0.00 0.00 0.00 3.01
182 183 8.992835 AATTTCTGCTCATCTTATTTTGGTTC 57.007 30.769 0.00 0.00 0.00 3.62
191 192 9.671279 TCTCACAATTAATTTCTGCTCATCTTA 57.329 29.630 0.00 0.00 0.00 2.10
192 193 8.571461 TCTCACAATTAATTTCTGCTCATCTT 57.429 30.769 0.00 0.00 0.00 2.40
193 194 8.571461 TTCTCACAATTAATTTCTGCTCATCT 57.429 30.769 0.00 0.00 0.00 2.90
194 195 9.070149 GTTTCTCACAATTAATTTCTGCTCATC 57.930 33.333 0.00 0.00 0.00 2.92
195 196 8.031277 GGTTTCTCACAATTAATTTCTGCTCAT 58.969 33.333 0.00 0.00 0.00 2.90
196 197 7.014134 TGGTTTCTCACAATTAATTTCTGCTCA 59.986 33.333 0.00 0.00 0.00 4.26
197 198 7.370383 TGGTTTCTCACAATTAATTTCTGCTC 58.630 34.615 0.00 0.00 0.00 4.26
198 199 7.288810 TGGTTTCTCACAATTAATTTCTGCT 57.711 32.000 0.00 0.00 0.00 4.24
199 200 7.945033 TTGGTTTCTCACAATTAATTTCTGC 57.055 32.000 0.00 0.00 0.00 4.26
201 202 9.030301 CGTTTTGGTTTCTCACAATTAATTTCT 57.970 29.630 0.00 0.00 0.00 2.52
202 203 8.272866 CCGTTTTGGTTTCTCACAATTAATTTC 58.727 33.333 0.00 0.00 0.00 2.17
203 204 7.982354 TCCGTTTTGGTTTCTCACAATTAATTT 59.018 29.630 0.00 0.00 39.52 1.82
204 205 7.493367 TCCGTTTTGGTTTCTCACAATTAATT 58.507 30.769 0.00 0.00 39.52 1.40
205 206 7.045126 TCCGTTTTGGTTTCTCACAATTAAT 57.955 32.000 0.00 0.00 39.52 1.40
206 207 6.452494 TCCGTTTTGGTTTCTCACAATTAA 57.548 33.333 0.00 0.00 39.52 1.40
207 208 5.009210 CCTCCGTTTTGGTTTCTCACAATTA 59.991 40.000 0.00 0.00 39.52 1.40
208 209 4.202111 CCTCCGTTTTGGTTTCTCACAATT 60.202 41.667 0.00 0.00 39.52 2.32
209 210 3.317993 CCTCCGTTTTGGTTTCTCACAAT 59.682 43.478 0.00 0.00 39.52 2.71
210 211 2.685897 CCTCCGTTTTGGTTTCTCACAA 59.314 45.455 0.00 0.00 39.52 3.33
211 212 2.294074 CCTCCGTTTTGGTTTCTCACA 58.706 47.619 0.00 0.00 39.52 3.58
212 213 1.607148 CCCTCCGTTTTGGTTTCTCAC 59.393 52.381 0.00 0.00 39.52 3.51
213 214 1.477923 CCCCTCCGTTTTGGTTTCTCA 60.478 52.381 0.00 0.00 39.52 3.27
214 215 1.244816 CCCCTCCGTTTTGGTTTCTC 58.755 55.000 0.00 0.00 39.52 2.87
215 216 0.554305 ACCCCTCCGTTTTGGTTTCT 59.446 50.000 0.00 0.00 39.52 2.52
216 217 1.405872 AACCCCTCCGTTTTGGTTTC 58.594 50.000 0.00 0.00 37.84 2.78
217 218 1.868713 AAACCCCTCCGTTTTGGTTT 58.131 45.000 0.00 0.00 44.17 3.27
218 219 1.116308 CAAACCCCTCCGTTTTGGTT 58.884 50.000 0.00 0.00 42.73 3.67
219 220 1.396607 GCAAACCCCTCCGTTTTGGT 61.397 55.000 0.00 0.00 39.52 3.67
220 221 1.365999 GCAAACCCCTCCGTTTTGG 59.634 57.895 0.00 0.00 33.69 3.28
221 222 1.007849 CGCAAACCCCTCCGTTTTG 60.008 57.895 0.00 0.00 33.69 2.44
222 223 2.852180 GCGCAAACCCCTCCGTTTT 61.852 57.895 0.30 0.00 33.69 2.43
223 224 3.292159 GCGCAAACCCCTCCGTTT 61.292 61.111 0.30 0.00 36.38 3.60
224 225 4.572571 TGCGCAAACCCCTCCGTT 62.573 61.111 8.16 0.00 0.00 4.44
225 226 4.572571 TTGCGCAAACCCCTCCGT 62.573 61.111 22.78 0.00 0.00 4.69
226 227 3.267597 CTTTGCGCAAACCCCTCCG 62.268 63.158 30.63 15.75 0.00 4.63
227 228 1.460273 TTCTTTGCGCAAACCCCTCC 61.460 55.000 30.63 0.00 0.00 4.30
228 229 0.603065 ATTCTTTGCGCAAACCCCTC 59.397 50.000 30.63 0.00 0.00 4.30
229 230 1.047801 AATTCTTTGCGCAAACCCCT 58.952 45.000 30.63 13.39 0.00 4.79
230 231 1.877637 AAATTCTTTGCGCAAACCCC 58.122 45.000 30.63 0.00 0.00 4.95
231 232 5.605564 AATTAAATTCTTTGCGCAAACCC 57.394 34.783 30.63 0.00 0.00 4.11
232 233 5.305036 CGAATTAAATTCTTTGCGCAAACC 58.695 37.500 30.63 9.04 37.13 3.27
233 234 4.776036 GCGAATTAAATTCTTTGCGCAAAC 59.224 37.500 30.63 15.75 42.41 2.93
234 235 4.940445 GCGAATTAAATTCTTTGCGCAAA 58.060 34.783 31.75 31.75 42.41 3.68
235 236 4.560396 GCGAATTAAATTCTTTGCGCAA 57.440 36.364 21.02 21.02 42.41 4.85
237 238 3.540167 GCTGCGAATTAAATTCTTTGCGC 60.540 43.478 0.00 0.00 43.07 6.09
238 239 3.853671 AGCTGCGAATTAAATTCTTTGCG 59.146 39.130 0.00 0.00 37.13 4.85
239 240 5.497597 CGAAGCTGCGAATTAAATTCTTTGC 60.498 40.000 9.01 0.00 37.13 3.68
240 241 5.794945 TCGAAGCTGCGAATTAAATTCTTTG 59.205 36.000 16.27 0.00 37.35 2.77
241 242 5.938322 TCGAAGCTGCGAATTAAATTCTTT 58.062 33.333 16.27 0.00 37.35 2.52
242 243 5.545658 TCGAAGCTGCGAATTAAATTCTT 57.454 34.783 16.27 0.00 37.35 2.52
243 244 5.545658 TTCGAAGCTGCGAATTAAATTCT 57.454 34.783 25.75 0.00 44.43 2.40
253 254 1.732259 GATTTCCTTTCGAAGCTGCGA 59.268 47.619 14.32 14.32 38.72 5.10
254 255 1.734465 AGATTTCCTTTCGAAGCTGCG 59.266 47.619 8.15 8.15 0.00 5.18
255 256 3.839051 AAGATTTCCTTTCGAAGCTGC 57.161 42.857 0.00 0.00 0.00 5.25
265 266 4.829492 CAGAAGGTGGTGAAAGATTTCCTT 59.171 41.667 3.00 0.00 36.36 3.36
266 267 4.401925 CAGAAGGTGGTGAAAGATTTCCT 58.598 43.478 3.00 0.00 36.36 3.36
267 268 3.057245 GCAGAAGGTGGTGAAAGATTTCC 60.057 47.826 3.00 0.00 36.36 3.13
268 269 3.057245 GGCAGAAGGTGGTGAAAGATTTC 60.057 47.826 0.00 0.00 37.69 2.17
269 270 2.893489 GGCAGAAGGTGGTGAAAGATTT 59.107 45.455 0.00 0.00 0.00 2.17
270 271 2.158475 TGGCAGAAGGTGGTGAAAGATT 60.158 45.455 0.00 0.00 0.00 2.40
271 272 1.425066 TGGCAGAAGGTGGTGAAAGAT 59.575 47.619 0.00 0.00 0.00 2.40
272 273 0.843309 TGGCAGAAGGTGGTGAAAGA 59.157 50.000 0.00 0.00 0.00 2.52
273 274 1.915141 ATGGCAGAAGGTGGTGAAAG 58.085 50.000 0.00 0.00 0.00 2.62
274 275 2.238521 GAATGGCAGAAGGTGGTGAAA 58.761 47.619 0.00 0.00 0.00 2.69
275 276 1.881925 CGAATGGCAGAAGGTGGTGAA 60.882 52.381 0.00 0.00 0.00 3.18
276 277 0.321564 CGAATGGCAGAAGGTGGTGA 60.322 55.000 0.00 0.00 0.00 4.02
277 278 1.308069 CCGAATGGCAGAAGGTGGTG 61.308 60.000 0.00 0.00 0.00 4.17
278 279 1.002134 CCGAATGGCAGAAGGTGGT 60.002 57.895 0.00 0.00 0.00 4.16
279 280 0.251916 TACCGAATGGCAGAAGGTGG 59.748 55.000 17.28 5.40 39.70 4.61
280 281 2.107950 TTACCGAATGGCAGAAGGTG 57.892 50.000 17.28 0.00 39.70 4.00
281 282 3.366052 AATTACCGAATGGCAGAAGGT 57.634 42.857 13.67 13.67 39.70 3.50
282 283 3.694072 TGAAATTACCGAATGGCAGAAGG 59.306 43.478 0.00 0.00 39.70 3.46
283 284 4.155826 TGTGAAATTACCGAATGGCAGAAG 59.844 41.667 0.00 0.00 39.70 2.85
284 285 4.075682 TGTGAAATTACCGAATGGCAGAA 58.924 39.130 0.00 0.00 39.70 3.02
285 286 3.438781 GTGTGAAATTACCGAATGGCAGA 59.561 43.478 0.00 0.00 39.70 4.26
286 287 3.440173 AGTGTGAAATTACCGAATGGCAG 59.560 43.478 0.00 0.00 39.70 4.85
287 288 3.417101 AGTGTGAAATTACCGAATGGCA 58.583 40.909 0.00 0.00 39.70 4.92
288 289 4.434713 AAGTGTGAAATTACCGAATGGC 57.565 40.909 0.00 0.00 39.70 4.40
289 290 6.007936 TGAAAGTGTGAAATTACCGAATGG 57.992 37.500 0.00 0.00 42.84 3.16
290 291 6.915300 TGTTGAAAGTGTGAAATTACCGAATG 59.085 34.615 0.00 0.00 0.00 2.67
291 292 7.033530 TGTTGAAAGTGTGAAATTACCGAAT 57.966 32.000 0.00 0.00 0.00 3.34
292 293 6.438259 TGTTGAAAGTGTGAAATTACCGAA 57.562 33.333 0.00 0.00 0.00 4.30
293 294 5.008217 CCTGTTGAAAGTGTGAAATTACCGA 59.992 40.000 0.00 0.00 0.00 4.69
294 295 5.008217 TCCTGTTGAAAGTGTGAAATTACCG 59.992 40.000 0.00 0.00 0.00 4.02
295 296 6.039382 ACTCCTGTTGAAAGTGTGAAATTACC 59.961 38.462 0.00 0.00 0.00 2.85
296 297 7.027778 ACTCCTGTTGAAAGTGTGAAATTAC 57.972 36.000 0.00 0.00 0.00 1.89
297 298 7.201785 GGAACTCCTGTTGAAAGTGTGAAATTA 60.202 37.037 0.00 0.00 36.39 1.40
298 299 6.405842 GGAACTCCTGTTGAAAGTGTGAAATT 60.406 38.462 0.00 0.00 36.39 1.82
299 300 5.067805 GGAACTCCTGTTGAAAGTGTGAAAT 59.932 40.000 0.00 0.00 36.39 2.17
300 301 4.398044 GGAACTCCTGTTGAAAGTGTGAAA 59.602 41.667 0.00 0.00 36.39 2.69
301 302 3.945285 GGAACTCCTGTTGAAAGTGTGAA 59.055 43.478 0.00 0.00 36.39 3.18
302 303 3.054728 TGGAACTCCTGTTGAAAGTGTGA 60.055 43.478 0.00 0.00 36.39 3.58
303 304 3.278574 TGGAACTCCTGTTGAAAGTGTG 58.721 45.455 0.00 0.00 36.39 3.82
304 305 3.644966 TGGAACTCCTGTTGAAAGTGT 57.355 42.857 0.00 0.00 36.39 3.55
305 306 5.520376 AAATGGAACTCCTGTTGAAAGTG 57.480 39.130 0.00 0.00 36.39 3.16
306 307 7.839680 AATAAATGGAACTCCTGTTGAAAGT 57.160 32.000 0.00 0.00 36.39 2.66
337 338 9.852481 GCGTGAATTTGTGTATACGAATATAAA 57.148 29.630 5.59 0.00 39.47 1.40
338 339 8.209214 CGCGTGAATTTGTGTATACGAATATAA 58.791 33.333 5.59 0.00 39.47 0.98
339 340 7.379262 ACGCGTGAATTTGTGTATACGAATATA 59.621 33.333 12.93 0.00 39.47 0.86
340 341 6.199531 ACGCGTGAATTTGTGTATACGAATAT 59.800 34.615 12.93 0.00 39.47 1.28
341 342 5.515982 ACGCGTGAATTTGTGTATACGAATA 59.484 36.000 12.93 0.00 39.47 1.75
342 343 4.327898 ACGCGTGAATTTGTGTATACGAAT 59.672 37.500 12.93 0.00 41.62 3.34
343 344 3.674281 ACGCGTGAATTTGTGTATACGAA 59.326 39.130 12.93 0.00 34.77 3.85
344 345 3.059702 CACGCGTGAATTTGTGTATACGA 59.940 43.478 34.93 0.00 33.78 3.43
345 346 3.181538 ACACGCGTGAATTTGTGTATACG 60.182 43.478 42.94 13.29 43.27 3.06
346 347 4.316375 ACACGCGTGAATTTGTGTATAC 57.684 40.909 42.94 0.00 43.27 1.47
388 389 2.830704 CTTACCAGCGTCACGGGTCC 62.831 65.000 0.91 0.00 44.41 4.46
400 405 2.380084 ATGTGGCGTGTACTTACCAG 57.620 50.000 0.00 0.00 31.46 4.00
402 407 2.414138 GTGAATGTGGCGTGTACTTACC 59.586 50.000 0.00 0.00 0.00 2.85
406 411 1.289109 GCGTGAATGTGGCGTGTACT 61.289 55.000 0.00 0.00 0.00 2.73
407 412 1.131826 GCGTGAATGTGGCGTGTAC 59.868 57.895 0.00 0.00 0.00 2.90
410 415 1.959899 GAGAGCGTGAATGTGGCGTG 61.960 60.000 0.00 0.00 0.00 5.34
411 416 1.738099 GAGAGCGTGAATGTGGCGT 60.738 57.895 0.00 0.00 0.00 5.68
412 417 2.792290 CGAGAGCGTGAATGTGGCG 61.792 63.158 0.00 0.00 0.00 5.69
492 497 2.095604 AGTTGCCTCTCTCCCCTATC 57.904 55.000 0.00 0.00 0.00 2.08
493 498 2.577772 AAGTTGCCTCTCTCCCCTAT 57.422 50.000 0.00 0.00 0.00 2.57
494 499 2.955461 GCTAAGTTGCCTCTCTCCCCTA 60.955 54.545 0.00 0.00 0.00 3.53
496 501 0.179234 GCTAAGTTGCCTCTCTCCCC 59.821 60.000 0.00 0.00 0.00 4.81
497 502 0.905357 TGCTAAGTTGCCTCTCTCCC 59.095 55.000 0.00 0.00 0.00 4.30
500 526 3.492102 TTGTTGCTAAGTTGCCTCTCT 57.508 42.857 0.00 0.00 0.00 3.10
501 527 3.315191 TGTTTGTTGCTAAGTTGCCTCTC 59.685 43.478 0.00 0.00 0.00 3.20
508 534 3.730662 CGCACACTGTTTGTTGCTAAGTT 60.731 43.478 0.00 0.00 35.67 2.66
512 538 1.063321 CACGCACACTGTTTGTTGCTA 59.937 47.619 0.00 0.00 35.67 3.49
514 540 0.455972 ACACGCACACTGTTTGTTGC 60.456 50.000 0.00 0.00 35.67 4.17
520 546 2.112198 CACCCACACGCACACTGTT 61.112 57.895 0.00 0.00 0.00 3.16
521 547 2.513666 CACCCACACGCACACTGT 60.514 61.111 0.00 0.00 0.00 3.55
522 548 2.513666 ACACCCACACGCACACTG 60.514 61.111 0.00 0.00 0.00 3.66
523 549 2.513666 CACACCCACACGCACACT 60.514 61.111 0.00 0.00 0.00 3.55
525 551 4.866224 CCCACACCCACACGCACA 62.866 66.667 0.00 0.00 0.00 4.57
543 569 4.818863 TGGGCATGCATGGTCCGG 62.819 66.667 27.34 0.00 0.00 5.14
628 673 3.158648 CCCCGGGATTAGCCGTCA 61.159 66.667 26.32 0.00 37.63 4.35
796 886 0.934496 TGAAACTTTCTCGTGTGGCG 59.066 50.000 3.22 0.00 43.01 5.69
825 915 2.430694 TCGAGACAGAGAGAGAGAGAGG 59.569 54.545 0.00 0.00 0.00 3.69
831 921 3.513912 ACTCTTCTCGAGACAGAGAGAGA 59.486 47.826 35.45 25.08 46.56 3.10
878 970 3.308705 GGGCTTTGCTTGCTGCCT 61.309 61.111 18.00 0.00 44.36 4.75
880 972 2.048503 CTGGGCTTTGCTTGCTGC 60.049 61.111 0.00 0.00 43.25 5.25
881 973 2.048503 GCTGGGCTTTGCTTGCTG 60.049 61.111 0.00 0.00 0.00 4.41
882 974 2.095978 CTTGCTGGGCTTTGCTTGCT 62.096 55.000 0.00 0.00 0.00 3.91
884 976 1.666872 GCTTGCTGGGCTTTGCTTG 60.667 57.895 0.00 0.00 0.00 4.01
922 1017 0.829333 GATCTGGAGGAGCAGCAAGA 59.171 55.000 0.00 0.00 0.00 3.02
948 1043 2.367107 GAACCCCTCCTCCTCCCC 60.367 72.222 0.00 0.00 0.00 4.81
951 1046 0.756070 CCTACGAACCCCTCCTCCTC 60.756 65.000 0.00 0.00 0.00 3.71
952 1047 1.310373 CCTACGAACCCCTCCTCCT 59.690 63.158 0.00 0.00 0.00 3.69
963 1058 3.766691 GCGCCCTCCACCTACGAA 61.767 66.667 0.00 0.00 0.00 3.85
990 1085 2.956964 GCCTTCATCTCCGACGCG 60.957 66.667 3.53 3.53 0.00 6.01
1135 1230 6.275855 AGAAGGGGAAAGAGGAAAAAGATAGT 59.724 38.462 0.00 0.00 0.00 2.12
1150 1247 4.166144 ACACAAAGAGAAGAGAAGGGGAAA 59.834 41.667 0.00 0.00 0.00 3.13
1168 1265 0.610174 CCCAGCTAGCTCAGACACAA 59.390 55.000 16.15 0.00 0.00 3.33
1171 1268 1.260538 CCACCCAGCTAGCTCAGACA 61.261 60.000 16.15 0.00 0.00 3.41
1172 1269 0.972983 TCCACCCAGCTAGCTCAGAC 60.973 60.000 16.15 0.00 0.00 3.51
1175 1272 1.340399 CCATCCACCCAGCTAGCTCA 61.340 60.000 16.15 0.00 0.00 4.26
1176 1273 1.050988 TCCATCCACCCAGCTAGCTC 61.051 60.000 16.15 0.00 0.00 4.09
1177 1274 0.401105 ATCCATCCACCCAGCTAGCT 60.401 55.000 12.68 12.68 0.00 3.32
1179 1276 0.399454 CCATCCATCCACCCAGCTAG 59.601 60.000 0.00 0.00 0.00 3.42
1181 1278 0.700269 ATCCATCCATCCACCCAGCT 60.700 55.000 0.00 0.00 0.00 4.24
1182 1279 0.538977 CATCCATCCATCCACCCAGC 60.539 60.000 0.00 0.00 0.00 4.85
1183 1280 0.111832 CCATCCATCCATCCACCCAG 59.888 60.000 0.00 0.00 0.00 4.45
1187 1294 2.641321 TCTCATCCATCCATCCATCCAC 59.359 50.000 0.00 0.00 0.00 4.02
1336 1444 1.143838 CGGTCAATCGATCCAGGCA 59.856 57.895 0.00 0.00 0.00 4.75
1337 1445 0.034059 ATCGGTCAATCGATCCAGGC 59.966 55.000 0.00 0.00 45.43 4.85
1362 1494 0.604073 GGCCGATTCTAGGTAGCTCC 59.396 60.000 0.00 0.00 0.00 4.70
1368 1500 0.249911 GCAATCGGCCGATTCTAGGT 60.250 55.000 42.73 24.35 42.30 3.08
1369 1501 0.034059 AGCAATCGGCCGATTCTAGG 59.966 55.000 42.73 32.79 46.50 3.02
1377 1509 1.064621 CCAAATCAGCAATCGGCCG 59.935 57.895 22.12 22.12 46.50 6.13
1379 1511 1.037030 TCCCCAAATCAGCAATCGGC 61.037 55.000 0.00 0.00 45.30 5.54
1380 1512 0.740737 GTCCCCAAATCAGCAATCGG 59.259 55.000 0.00 0.00 0.00 4.18
1381 1513 0.378257 CGTCCCCAAATCAGCAATCG 59.622 55.000 0.00 0.00 0.00 3.34
1384 1516 1.988293 TTTCGTCCCCAAATCAGCAA 58.012 45.000 0.00 0.00 0.00 3.91
1415 1547 2.110901 AGGAAGTCTTGAGCAGCATG 57.889 50.000 0.00 0.00 40.87 4.06
1419 1551 5.530543 AGAAGAAAAAGGAAGTCTTGAGCAG 59.469 40.000 0.00 0.00 35.55 4.24
1431 1563 7.093552 TGACCAATCAACAAAGAAGAAAAAGGA 60.094 33.333 0.00 0.00 0.00 3.36
1432 1564 7.041107 TGACCAATCAACAAAGAAGAAAAAGG 58.959 34.615 0.00 0.00 0.00 3.11
1433 1565 7.223387 CCTGACCAATCAACAAAGAAGAAAAAG 59.777 37.037 0.00 0.00 33.30 2.27
1434 1566 7.041107 CCTGACCAATCAACAAAGAAGAAAAA 58.959 34.615 0.00 0.00 33.30 1.94
1435 1567 6.154363 ACCTGACCAATCAACAAAGAAGAAAA 59.846 34.615 0.00 0.00 33.30 2.29
1438 1570 4.792068 ACCTGACCAATCAACAAAGAAGA 58.208 39.130 0.00 0.00 33.30 2.87
1446 1578 2.076863 CTCCGAACCTGACCAATCAAC 58.923 52.381 0.00 0.00 33.30 3.18
1460 1592 1.195115 CCTCCACATCTTCCTCCGAA 58.805 55.000 0.00 0.00 0.00 4.30
1463 1595 1.127343 CCTCCTCCACATCTTCCTCC 58.873 60.000 0.00 0.00 0.00 4.30
1469 1601 1.008815 TCCACATCCTCCTCCACATCT 59.991 52.381 0.00 0.00 0.00 2.90
1472 1604 0.618680 CCTCCACATCCTCCTCCACA 60.619 60.000 0.00 0.00 0.00 4.17
1474 1606 0.325671 GTCCTCCACATCCTCCTCCA 60.326 60.000 0.00 0.00 0.00 3.86
1576 1708 4.106502 GCCTCCCCTTATCCTTATCCTTTT 59.893 45.833 0.00 0.00 0.00 2.27
1577 1709 3.658216 GCCTCCCCTTATCCTTATCCTTT 59.342 47.826 0.00 0.00 0.00 3.11
1596 1728 1.879796 CGGCTTCTTCTTCTTGTGCCT 60.880 52.381 0.00 0.00 37.01 4.75
1597 1729 0.519077 CGGCTTCTTCTTCTTGTGCC 59.481 55.000 0.00 0.00 35.94 5.01
1598 1730 1.195674 GTCGGCTTCTTCTTCTTGTGC 59.804 52.381 0.00 0.00 0.00 4.57
1687 1822 3.215151 GAGTCGATGTAGATGGTGGAGA 58.785 50.000 0.00 0.00 0.00 3.71
2799 2976 0.947244 ATATACACGGACGGACGGAC 59.053 55.000 6.00 0.00 38.39 4.79
2800 2977 1.202687 AGATATACACGGACGGACGGA 60.203 52.381 6.00 0.00 38.39 4.69
2801 2978 1.233019 AGATATACACGGACGGACGG 58.767 55.000 6.00 0.00 38.39 4.79
2802 2979 3.931468 AGATAGATATACACGGACGGACG 59.069 47.826 0.00 0.00 40.31 4.79
2841 3018 3.883744 AAACGAGGCAGGCACGGAG 62.884 63.158 17.76 0.00 0.00 4.63
2842 3019 3.469863 AAAACGAGGCAGGCACGGA 62.470 57.895 17.76 0.00 0.00 4.69
2843 3020 2.978010 AAAACGAGGCAGGCACGG 60.978 61.111 17.76 0.79 0.00 4.94
2844 3021 2.252260 CAAAACGAGGCAGGCACG 59.748 61.111 12.29 12.29 0.00 5.34
2845 3022 2.050077 GCAAAACGAGGCAGGCAC 60.050 61.111 0.00 0.00 0.00 5.01
2891 3068 8.558700 CAAGAGGAAGAAGAAGAAAGAAGAAAG 58.441 37.037 0.00 0.00 0.00 2.62
2893 3070 6.484977 GCAAGAGGAAGAAGAAGAAAGAAGAA 59.515 38.462 0.00 0.00 0.00 2.52
2894 3071 5.994668 GCAAGAGGAAGAAGAAGAAAGAAGA 59.005 40.000 0.00 0.00 0.00 2.87
2895 3072 5.997129 AGCAAGAGGAAGAAGAAGAAAGAAG 59.003 40.000 0.00 0.00 0.00 2.85
2896 3073 5.934781 AGCAAGAGGAAGAAGAAGAAAGAA 58.065 37.500 0.00 0.00 0.00 2.52
2897 3074 5.306678 AGAGCAAGAGGAAGAAGAAGAAAGA 59.693 40.000 0.00 0.00 0.00 2.52
2898 3075 5.550290 AGAGCAAGAGGAAGAAGAAGAAAG 58.450 41.667 0.00 0.00 0.00 2.62
2899 3076 5.559148 AGAGCAAGAGGAAGAAGAAGAAA 57.441 39.130 0.00 0.00 0.00 2.52
2978 3159 8.693542 AGCAAATAATCACAAAAGTATGAAGC 57.306 30.769 0.00 0.00 0.00 3.86
3034 3221 5.367937 ACTGGTGGAGCTATATGTTCTTGAT 59.632 40.000 0.00 0.00 0.00 2.57
3035 3222 4.716784 ACTGGTGGAGCTATATGTTCTTGA 59.283 41.667 0.00 0.00 0.00 3.02
3112 3299 0.727122 GTGCTGCGATGTGTTCTTGC 60.727 55.000 0.00 0.00 0.00 4.01
3122 3309 1.765314 AGGGAAGATAAGTGCTGCGAT 59.235 47.619 0.00 0.00 0.00 4.58
3153 3340 5.163280 CCATTGCCATTACCATTGGAGATTT 60.163 40.000 10.37 0.00 36.37 2.17
3222 3415 1.454847 CAGTCCTCCTCCTCTCCCG 60.455 68.421 0.00 0.00 0.00 5.14
3254 3447 4.767255 GGCTGACACGGAGCAGGG 62.767 72.222 0.00 0.00 38.27 4.45
3306 3499 4.641645 TCCACCACTTGGCGGCTG 62.642 66.667 11.43 5.73 46.47 4.85
3313 3519 1.361668 CGGAATCGCTCCACCACTTG 61.362 60.000 4.51 0.00 45.74 3.16
3314 3520 1.079127 CGGAATCGCTCCACCACTT 60.079 57.895 4.51 0.00 45.74 3.16
3318 3524 1.519455 CTGACGGAATCGCTCCACC 60.519 63.158 4.51 0.00 45.74 4.61
3330 3536 0.179127 ACACATCGATCAGCTGACGG 60.179 55.000 26.93 19.37 0.00 4.79
3347 3553 2.480416 GCCGAACAATCAACCAACAACA 60.480 45.455 0.00 0.00 0.00 3.33
3348 3554 2.124122 GCCGAACAATCAACCAACAAC 58.876 47.619 0.00 0.00 0.00 3.32
3349 3555 1.067821 GGCCGAACAATCAACCAACAA 59.932 47.619 0.00 0.00 0.00 2.83
3369 3575 5.050837 CCAAACTTTGATTTCTTTTCCGCTG 60.051 40.000 2.87 0.00 0.00 5.18
3372 3578 5.049828 AGCCAAACTTTGATTTCTTTTCCG 58.950 37.500 2.87 0.00 0.00 4.30
3389 3602 3.758172 GCGAAGGAACCAGCCAAA 58.242 55.556 0.00 0.00 0.00 3.28
3397 3610 2.664436 CGAACCACGGCGAAGGAAC 61.664 63.158 24.93 17.08 38.46 3.62
3398 3611 2.356553 CGAACCACGGCGAAGGAA 60.357 61.111 24.93 0.00 38.46 3.36
3444 3657 3.019003 TAGCTCGGAGTTGGCAGCC 62.019 63.158 3.66 3.66 31.81 4.85
3474 3687 3.670637 GAGATGACGCTGGCAGGCA 62.671 63.158 17.64 0.00 0.00 4.75
3552 3765 0.332972 CCTCCCCCTGGAAAGAAAGG 59.667 60.000 0.00 0.00 41.17 3.11
3556 3769 1.640670 CATTTCCTCCCCCTGGAAAGA 59.359 52.381 12.50 0.00 46.19 2.52
3557 3770 1.359130 ACATTTCCTCCCCCTGGAAAG 59.641 52.381 12.50 8.02 46.19 2.62
3558 3771 1.357761 GACATTTCCTCCCCCTGGAAA 59.642 52.381 9.89 9.89 46.19 3.13
3561 3774 0.257039 CTGACATTTCCTCCCCCTGG 59.743 60.000 0.00 0.00 0.00 4.45
3563 3776 1.915078 CGCTGACATTTCCTCCCCCT 61.915 60.000 0.00 0.00 0.00 4.79
3564 3777 1.452108 CGCTGACATTTCCTCCCCC 60.452 63.158 0.00 0.00 0.00 5.40
3570 3783 4.179579 GCCGCCGCTGACATTTCC 62.180 66.667 0.00 0.00 0.00 3.13
3607 3820 7.009540 GGCGAAATGTGGAAGAAAAATAATGAG 59.990 37.037 0.00 0.00 0.00 2.90
3608 3821 6.811170 GGCGAAATGTGGAAGAAAAATAATGA 59.189 34.615 0.00 0.00 0.00 2.57
3609 3822 6.237542 CGGCGAAATGTGGAAGAAAAATAATG 60.238 38.462 0.00 0.00 0.00 1.90
3610 3823 5.804979 CGGCGAAATGTGGAAGAAAAATAAT 59.195 36.000 0.00 0.00 0.00 1.28
3611 3824 5.157781 CGGCGAAATGTGGAAGAAAAATAA 58.842 37.500 0.00 0.00 0.00 1.40
3612 3825 4.216687 ACGGCGAAATGTGGAAGAAAAATA 59.783 37.500 16.62 0.00 0.00 1.40
3613 3826 3.005367 ACGGCGAAATGTGGAAGAAAAAT 59.995 39.130 16.62 0.00 0.00 1.82
3614 3827 2.359531 ACGGCGAAATGTGGAAGAAAAA 59.640 40.909 16.62 0.00 0.00 1.94
3615 3828 1.950909 ACGGCGAAATGTGGAAGAAAA 59.049 42.857 16.62 0.00 0.00 2.29
3616 3829 1.533731 GACGGCGAAATGTGGAAGAAA 59.466 47.619 16.62 0.00 0.00 2.52
3617 3830 1.153353 GACGGCGAAATGTGGAAGAA 58.847 50.000 16.62 0.00 0.00 2.52
3618 3831 0.320374 AGACGGCGAAATGTGGAAGA 59.680 50.000 16.62 0.00 0.00 2.87
3619 3832 0.443869 CAGACGGCGAAATGTGGAAG 59.556 55.000 16.62 0.00 0.00 3.46
3620 3833 0.953471 CCAGACGGCGAAATGTGGAA 60.953 55.000 16.62 0.00 0.00 3.53
3621 3834 1.375396 CCAGACGGCGAAATGTGGA 60.375 57.895 16.62 0.00 0.00 4.02
3622 3835 1.234615 AACCAGACGGCGAAATGTGG 61.235 55.000 16.62 12.61 34.57 4.17
3642 3855 4.425772 TCCTTGAATAGGTCCAGTCTCAA 58.574 43.478 0.00 0.00 45.03 3.02
3643 3856 4.026744 CTCCTTGAATAGGTCCAGTCTCA 58.973 47.826 0.00 0.00 45.03 3.27
3649 3897 6.295123 GCGAATATACTCCTTGAATAGGTCCA 60.295 42.308 0.00 0.00 45.03 4.02
3677 3925 1.659098 CACGAGATTAAAGTGGTCCGC 59.341 52.381 0.00 0.00 32.68 5.54
3694 3942 1.071239 CAAGTTTCACTCTCGTGCACG 60.071 52.381 32.76 32.76 40.99 5.34
3711 3959 7.145323 AGTTAATTTTCAATCCGGTCAACAAG 58.855 34.615 0.00 0.00 0.00 3.16
3719 3967 8.755696 TTCATGAAAGTTAATTTTCAATCCGG 57.244 30.769 24.41 14.21 46.63 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.