Multiple sequence alignment - TraesCS6D01G090200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G090200 chr6D 100.000 4895 0 0 1 4895 56018598 56023492 0.000000e+00 9040.0
1 TraesCS6D01G090200 chr6D 91.188 1271 109 3 2065 3334 56275533 56276801 0.000000e+00 1724.0
2 TraesCS6D01G090200 chr6D 89.770 391 30 4 2873 3253 62244002 62243612 4.400000e-135 492.0
3 TraesCS6D01G090200 chr6D 95.941 271 11 0 1 271 14615915 14615645 1.620000e-119 440.0
4 TraesCS6D01G090200 chr6D 96.269 268 10 0 1 268 464465749 464465482 1.620000e-119 440.0
5 TraesCS6D01G090200 chr6D 76.585 568 84 29 718 1251 56273980 56274532 2.900000e-67 267.0
6 TraesCS6D01G090200 chr6B 95.451 2374 71 19 2050 4391 126218924 126221292 0.000000e+00 3751.0
7 TraesCS6D01G090200 chr6B 91.894 1283 101 3 2050 3331 126629987 126631267 0.000000e+00 1790.0
8 TraesCS6D01G090200 chr6B 88.630 1029 61 19 617 1623 126217490 126218484 0.000000e+00 1201.0
9 TraesCS6D01G090200 chr6B 94.461 343 2 4 4434 4772 126223625 126223954 3.380000e-141 512.0
10 TraesCS6D01G090200 chr6B 77.676 766 117 37 3336 4071 126631358 126632099 7.580000e-113 418.0
11 TraesCS6D01G090200 chr6B 88.591 298 14 4 1654 1951 126218488 126218765 1.300000e-90 344.0
12 TraesCS6D01G090200 chr6B 87.671 219 24 3 1733 1951 449292723 449292508 8.130000e-63 252.0
13 TraesCS6D01G090200 chr6B 94.574 129 4 2 4767 4895 126224080 126224205 3.870000e-46 196.0
14 TraesCS6D01G090200 chr6A 94.444 2250 74 23 1963 4166 70571055 70573299 0.000000e+00 3415.0
15 TraesCS6D01G090200 chr6A 90.571 1400 71 28 587 1950 70569427 70570801 0.000000e+00 1797.0
16 TraesCS6D01G090200 chr6A 91.990 1261 96 5 2076 3334 70911916 70913173 0.000000e+00 1764.0
17 TraesCS6D01G090200 chr6A 77.243 769 122 33 3336 4076 70913262 70914005 7.630000e-108 401.0
18 TraesCS6D01G090200 chr6A 91.556 225 11 5 4550 4772 70608440 70608658 2.210000e-78 303.0
19 TraesCS6D01G090200 chr6A 76.292 561 90 28 718 1256 70910505 70911044 4.860000e-65 259.0
20 TraesCS6D01G090200 chr6A 92.982 171 4 2 4390 4559 70576249 70576412 4.900000e-60 243.0
21 TraesCS6D01G090200 chr6A 85.965 228 20 8 266 482 70567123 70567349 2.950000e-57 233.0
22 TraesCS6D01G090200 chr6A 94.792 96 2 1 497 589 70569026 70569121 3.950000e-31 147.0
23 TraesCS6D01G090200 chr6A 94.737 95 4 1 4767 4861 70608784 70608877 3.950000e-31 147.0
24 TraesCS6D01G090200 chr6A 97.500 80 2 0 4314 4393 70574751 70574830 2.380000e-28 137.0
25 TraesCS6D01G090200 chr6A 92.632 95 5 1 4173 4267 70574657 70574749 8.550000e-28 135.0
26 TraesCS6D01G090200 chr2B 90.323 682 49 6 2656 3328 23365379 23366052 0.000000e+00 878.0
27 TraesCS6D01G090200 chr2B 95.522 268 12 0 1 268 641096723 641096456 3.500000e-116 429.0
28 TraesCS6D01G090200 chr5A 92.246 374 23 5 1969 2338 121942978 121942607 4.340000e-145 525.0
29 TraesCS6D01G090200 chr5A 91.689 373 24 5 1969 2338 123291745 123291377 1.220000e-140 510.0
30 TraesCS6D01G090200 chr5A 91.467 375 25 6 1969 2338 519494532 519494160 4.370000e-140 508.0
31 TraesCS6D01G090200 chr5A 82.319 345 50 9 1070 1413 539826235 539825901 6.200000e-74 289.0
32 TraesCS6D01G090200 chr5A 97.500 40 1 0 1910 1949 490406473 490406434 8.790000e-08 69.4
33 TraesCS6D01G090200 chr5D 91.086 359 28 3 1969 2324 463943631 463943274 2.650000e-132 483.0
34 TraesCS6D01G090200 chr5D 95.000 40 0 2 406 445 519973553 519973590 1.470000e-05 62.1
35 TraesCS6D01G090200 chr2A 90.160 376 28 4 2873 3240 659628980 659628606 9.530000e-132 481.0
36 TraesCS6D01G090200 chr2A 89.258 391 32 4 2873 3253 735655915 735655525 9.530000e-132 481.0
37 TraesCS6D01G090200 chr2A 93.333 45 2 1 407 451 91811135 91811092 1.140000e-06 65.8
38 TraesCS6D01G090200 chrUn 96.241 266 10 0 3 268 83928666 83928931 2.090000e-118 436.0
39 TraesCS6D01G090200 chr3A 96.241 266 9 1 3 268 716637024 716637288 7.520000e-118 435.0
40 TraesCS6D01G090200 chr3A 83.526 346 48 8 1069 1410 496385452 496385792 1.020000e-81 315.0
41 TraesCS6D01G090200 chr1D 95.896 268 11 0 1 268 475277761 475277494 7.520000e-118 435.0
42 TraesCS6D01G090200 chr5B 95.865 266 11 0 3 268 647914933 647914668 9.730000e-117 431.0
43 TraesCS6D01G090200 chr5B 95.865 266 11 0 3 268 680927621 680927356 9.730000e-117 431.0
44 TraesCS6D01G090200 chr7B 95.522 268 12 0 1 268 138475226 138474959 3.500000e-116 429.0
45 TraesCS6D01G090200 chr7B 95.000 40 1 1 407 446 219236075 219236113 1.470000e-05 62.1
46 TraesCS6D01G090200 chr2D 84.726 347 44 8 1069 1410 92457796 92458138 6.070000e-89 339.0
47 TraesCS6D01G090200 chr2D 91.304 46 2 2 406 451 596405961 596406004 1.470000e-05 62.1
48 TraesCS6D01G090200 chr7A 83.761 351 48 9 1069 1413 25225286 25224939 1.700000e-84 324.0
49 TraesCS6D01G090200 chr7A 93.333 45 2 1 407 451 298793272 298793315 1.140000e-06 65.8
50 TraesCS6D01G090200 chr4B 87.215 219 18 5 1733 1951 592868605 592868397 1.760000e-59 241.0
51 TraesCS6D01G090200 chr4B 88.108 185 20 2 1073 1256 592869006 592868823 8.250000e-53 219.0
52 TraesCS6D01G090200 chr1B 84.722 72 6 4 407 476 438217773 438217705 3.160000e-07 67.6
53 TraesCS6D01G090200 chr1B 82.432 74 10 2 412 482 331759045 331759118 1.470000e-05 62.1
54 TraesCS6D01G090200 chr3D 83.562 73 7 4 407 476 525993778 525993708 4.090000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G090200 chr6D 56018598 56023492 4894 False 9040.000000 9040 100.000000 1 4895 1 chr6D.!!$F1 4894
1 TraesCS6D01G090200 chr6D 56273980 56276801 2821 False 995.500000 1724 83.886500 718 3334 2 chr6D.!!$F2 2616
2 TraesCS6D01G090200 chr6B 126217490 126224205 6715 False 1200.800000 3751 92.341400 617 4895 5 chr6B.!!$F1 4278
3 TraesCS6D01G090200 chr6B 126629987 126632099 2112 False 1104.000000 1790 84.785000 2050 4071 2 chr6B.!!$F2 2021
4 TraesCS6D01G090200 chr6A 70567123 70576412 9289 False 872.428571 3415 92.698000 266 4559 7 chr6A.!!$F1 4293
5 TraesCS6D01G090200 chr6A 70910505 70914005 3500 False 808.000000 1764 81.841667 718 4076 3 chr6A.!!$F3 3358
6 TraesCS6D01G090200 chr2B 23365379 23366052 673 False 878.000000 878 90.323000 2656 3328 1 chr2B.!!$F1 672
7 TraesCS6D01G090200 chr4B 592868397 592869006 609 True 230.000000 241 87.661500 1073 1951 2 chr4B.!!$R1 878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 498 0.035739 ACACACCGTACCATTGTCCC 59.964 55.0 0.00 0.0 0.00 4.46 F
1140 3173 0.317519 CCGCTCGTTTTTGGGTTGTC 60.318 55.0 0.00 0.0 0.00 3.18 F
2193 4775 0.534412 AGCACGAGAAGAGTGATGGG 59.466 55.0 0.07 0.0 41.83 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2292 4874 0.319900 GCCTCACTTCGAACTGCAGA 60.320 55.000 23.35 0.0 0.00 4.26 R
2631 5213 1.745087 GGCTCAAAATCATCAGCGGAA 59.255 47.619 0.00 0.0 32.26 4.30 R
3921 6652 1.266989 CGAGGAGTTCACAAAAAGGCC 59.733 52.381 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.914033 TGAAGAATATCGTAGGTTGGAAGG 58.086 41.667 0.00 0.00 0.00 3.46
25 26 5.659525 TGAAGAATATCGTAGGTTGGAAGGA 59.340 40.000 0.00 0.00 0.00 3.36
26 27 6.326583 TGAAGAATATCGTAGGTTGGAAGGAT 59.673 38.462 0.00 0.00 0.00 3.24
27 28 6.749036 AGAATATCGTAGGTTGGAAGGATT 57.251 37.500 0.00 0.00 0.00 3.01
28 29 6.760291 AGAATATCGTAGGTTGGAAGGATTC 58.240 40.000 0.00 0.00 46.67 2.52
40 41 3.053831 GAAGGATTCAACCCGAAGACA 57.946 47.619 0.00 0.00 46.62 3.41
41 42 2.474410 AGGATTCAACCCGAAGACAC 57.526 50.000 0.00 0.00 36.95 3.67
42 43 1.697432 AGGATTCAACCCGAAGACACA 59.303 47.619 0.00 0.00 36.95 3.72
43 44 1.804748 GGATTCAACCCGAAGACACAC 59.195 52.381 0.00 0.00 36.95 3.82
44 45 1.459592 GATTCAACCCGAAGACACACG 59.540 52.381 0.00 0.00 36.95 4.49
45 46 0.460722 TTCAACCCGAAGACACACGA 59.539 50.000 0.00 0.00 0.00 4.35
46 47 0.460722 TCAACCCGAAGACACACGAA 59.539 50.000 0.00 0.00 0.00 3.85
47 48 0.580104 CAACCCGAAGACACACGAAC 59.420 55.000 0.00 0.00 0.00 3.95
48 49 0.872881 AACCCGAAGACACACGAACG 60.873 55.000 0.00 0.00 0.00 3.95
49 50 1.299620 CCCGAAGACACACGAACGT 60.300 57.895 0.00 0.00 0.00 3.99
50 51 0.040157 CCCGAAGACACACGAACGTA 60.040 55.000 0.00 0.00 0.00 3.57
51 52 1.324718 CCGAAGACACACGAACGTAG 58.675 55.000 0.00 0.00 0.00 3.51
52 53 1.069703 CCGAAGACACACGAACGTAGA 60.070 52.381 0.00 0.00 0.00 2.59
53 54 1.967908 CGAAGACACACGAACGTAGAC 59.032 52.381 0.00 0.00 0.00 2.59
54 55 1.967908 GAAGACACACGAACGTAGACG 59.032 52.381 0.00 0.00 46.33 4.18
55 56 1.220529 AGACACACGAACGTAGACGA 58.779 50.000 9.41 0.00 43.02 4.20
56 57 1.599071 AGACACACGAACGTAGACGAA 59.401 47.619 9.41 0.00 43.02 3.85
57 58 1.705559 GACACACGAACGTAGACGAAC 59.294 52.381 9.41 1.55 43.02 3.95
58 59 1.063912 ACACACGAACGTAGACGAACA 59.936 47.619 9.41 0.00 43.02 3.18
59 60 2.110990 CACACGAACGTAGACGAACAA 58.889 47.619 9.41 0.00 43.02 2.83
60 61 2.098211 CACACGAACGTAGACGAACAAC 60.098 50.000 9.41 0.00 43.02 3.32
62 63 1.003972 ACGAACGTAGACGAACAACGA 60.004 47.619 9.41 0.00 45.77 3.85
63 64 1.376856 CGAACGTAGACGAACAACGAC 59.623 52.381 9.41 0.00 45.77 4.34
64 65 1.376856 GAACGTAGACGAACAACGACG 59.623 52.381 9.41 0.00 45.77 5.12
65 66 0.581529 ACGTAGACGAACAACGACGA 59.418 50.000 9.41 0.00 45.77 4.20
66 67 1.236556 CGTAGACGAACAACGACGAG 58.763 55.000 0.00 0.00 45.77 4.18
67 68 1.136529 CGTAGACGAACAACGACGAGA 60.137 52.381 0.00 0.00 45.77 4.04
68 69 2.473540 CGTAGACGAACAACGACGAGAT 60.474 50.000 0.00 0.00 45.77 2.75
69 70 2.244281 AGACGAACAACGACGAGATC 57.756 50.000 0.00 0.00 45.77 2.75
70 71 1.534163 AGACGAACAACGACGAGATCA 59.466 47.619 0.00 0.00 45.77 2.92
71 72 1.905687 GACGAACAACGACGAGATCAG 59.094 52.381 0.00 0.00 45.77 2.90
72 73 1.534163 ACGAACAACGACGAGATCAGA 59.466 47.619 0.00 0.00 45.77 3.27
73 74 2.169974 CGAACAACGACGAGATCAGAG 58.830 52.381 0.00 0.00 45.77 3.35
74 75 1.914700 GAACAACGACGAGATCAGAGC 59.085 52.381 0.00 0.00 0.00 4.09
75 76 0.881796 ACAACGACGAGATCAGAGCA 59.118 50.000 0.00 0.00 0.00 4.26
76 77 1.269723 ACAACGACGAGATCAGAGCAA 59.730 47.619 0.00 0.00 0.00 3.91
77 78 2.288213 ACAACGACGAGATCAGAGCAAA 60.288 45.455 0.00 0.00 0.00 3.68
78 79 2.926200 CAACGACGAGATCAGAGCAAAT 59.074 45.455 0.00 0.00 0.00 2.32
79 80 2.803451 ACGACGAGATCAGAGCAAATC 58.197 47.619 0.00 0.00 0.00 2.17
80 81 2.123342 CGACGAGATCAGAGCAAATCC 58.877 52.381 0.00 0.00 0.00 3.01
81 82 2.480244 CGACGAGATCAGAGCAAATCCA 60.480 50.000 0.00 0.00 0.00 3.41
82 83 2.863137 GACGAGATCAGAGCAAATCCAC 59.137 50.000 0.00 0.00 0.00 4.02
83 84 2.208431 CGAGATCAGAGCAAATCCACC 58.792 52.381 0.00 0.00 0.00 4.61
84 85 2.419159 CGAGATCAGAGCAAATCCACCA 60.419 50.000 0.00 0.00 0.00 4.17
85 86 3.614092 GAGATCAGAGCAAATCCACCAA 58.386 45.455 0.00 0.00 0.00 3.67
86 87 4.012374 GAGATCAGAGCAAATCCACCAAA 58.988 43.478 0.00 0.00 0.00 3.28
87 88 4.410099 AGATCAGAGCAAATCCACCAAAA 58.590 39.130 0.00 0.00 0.00 2.44
88 89 4.834496 AGATCAGAGCAAATCCACCAAAAA 59.166 37.500 0.00 0.00 0.00 1.94
89 90 5.482878 AGATCAGAGCAAATCCACCAAAAAT 59.517 36.000 0.00 0.00 0.00 1.82
90 91 6.664816 AGATCAGAGCAAATCCACCAAAAATA 59.335 34.615 0.00 0.00 0.00 1.40
91 92 6.271488 TCAGAGCAAATCCACCAAAAATAG 57.729 37.500 0.00 0.00 0.00 1.73
92 93 6.009589 TCAGAGCAAATCCACCAAAAATAGA 58.990 36.000 0.00 0.00 0.00 1.98
93 94 6.664816 TCAGAGCAAATCCACCAAAAATAGAT 59.335 34.615 0.00 0.00 0.00 1.98
94 95 6.976925 CAGAGCAAATCCACCAAAAATAGATC 59.023 38.462 0.00 0.00 0.00 2.75
95 96 6.097412 AGAGCAAATCCACCAAAAATAGATCC 59.903 38.462 0.00 0.00 0.00 3.36
96 97 5.043248 GCAAATCCACCAAAAATAGATCCG 58.957 41.667 0.00 0.00 0.00 4.18
97 98 4.918810 AATCCACCAAAAATAGATCCGC 57.081 40.909 0.00 0.00 0.00 5.54
98 99 2.650322 TCCACCAAAAATAGATCCGCC 58.350 47.619 0.00 0.00 0.00 6.13
99 100 1.333619 CCACCAAAAATAGATCCGCCG 59.666 52.381 0.00 0.00 0.00 6.46
100 101 1.333619 CACCAAAAATAGATCCGCCGG 59.666 52.381 0.00 0.00 0.00 6.13
101 102 1.210967 ACCAAAAATAGATCCGCCGGA 59.789 47.619 8.97 8.97 35.55 5.14
102 103 1.873591 CCAAAAATAGATCCGCCGGAG 59.126 52.381 13.12 0.00 34.05 4.63
103 104 2.484770 CCAAAAATAGATCCGCCGGAGA 60.485 50.000 13.12 0.00 34.05 3.71
104 105 2.528041 AAAATAGATCCGCCGGAGAC 57.472 50.000 13.12 8.53 34.05 3.36
105 106 1.410004 AAATAGATCCGCCGGAGACA 58.590 50.000 13.12 0.00 34.05 3.41
106 107 0.674534 AATAGATCCGCCGGAGACAC 59.325 55.000 13.12 3.15 34.05 3.67
107 108 0.467474 ATAGATCCGCCGGAGACACA 60.467 55.000 13.12 1.27 34.05 3.72
108 109 1.381928 TAGATCCGCCGGAGACACAC 61.382 60.000 13.12 0.00 34.05 3.82
109 110 3.718210 GATCCGCCGGAGACACACC 62.718 68.421 13.12 0.00 34.05 4.16
110 111 4.988716 TCCGCCGGAGACACACCT 62.989 66.667 5.05 0.00 0.00 4.00
111 112 4.436998 CCGCCGGAGACACACCTC 62.437 72.222 5.05 0.00 0.00 3.85
117 118 4.655527 GAGACACACCTCCACACG 57.344 61.111 0.00 0.00 0.00 4.49
118 119 1.664965 GAGACACACCTCCACACGC 60.665 63.158 0.00 0.00 0.00 5.34
119 120 2.665185 GACACACCTCCACACGCC 60.665 66.667 0.00 0.00 0.00 5.68
120 121 4.250305 ACACACCTCCACACGCCC 62.250 66.667 0.00 0.00 0.00 6.13
121 122 4.248842 CACACCTCCACACGCCCA 62.249 66.667 0.00 0.00 0.00 5.36
122 123 4.250305 ACACCTCCACACGCCCAC 62.250 66.667 0.00 0.00 0.00 4.61
125 126 4.263572 CCTCCACACGCCCACCAA 62.264 66.667 0.00 0.00 0.00 3.67
126 127 2.978010 CTCCACACGCCCACCAAC 60.978 66.667 0.00 0.00 0.00 3.77
127 128 4.920112 TCCACACGCCCACCAACG 62.920 66.667 0.00 0.00 0.00 4.10
128 129 4.920112 CCACACGCCCACCAACGA 62.920 66.667 0.00 0.00 0.00 3.85
129 130 2.668212 CACACGCCCACCAACGAT 60.668 61.111 0.00 0.00 0.00 3.73
130 131 2.668212 ACACGCCCACCAACGATG 60.668 61.111 0.00 0.00 0.00 3.84
131 132 4.101790 CACGCCCACCAACGATGC 62.102 66.667 0.00 0.00 0.00 3.91
132 133 4.329545 ACGCCCACCAACGATGCT 62.330 61.111 0.00 0.00 0.00 3.79
133 134 2.125310 CGCCCACCAACGATGCTA 60.125 61.111 0.00 0.00 0.00 3.49
134 135 2.173669 CGCCCACCAACGATGCTAG 61.174 63.158 0.00 0.00 0.00 3.42
135 136 1.220749 GCCCACCAACGATGCTAGA 59.779 57.895 0.00 0.00 0.00 2.43
136 137 1.090052 GCCCACCAACGATGCTAGAC 61.090 60.000 0.00 0.00 0.00 2.59
137 138 0.806102 CCCACCAACGATGCTAGACG 60.806 60.000 0.00 0.00 0.00 4.18
138 139 1.421410 CCACCAACGATGCTAGACGC 61.421 60.000 0.00 0.00 39.77 5.19
148 149 4.124351 CTAGACGCACCGCCGGAA 62.124 66.667 11.71 0.00 0.00 4.30
149 150 4.424566 TAGACGCACCGCCGGAAC 62.425 66.667 11.71 0.00 0.00 3.62
159 160 4.176752 GCCGGAACAGGGGCTAGG 62.177 72.222 5.05 0.00 45.93 3.02
160 161 4.176752 CCGGAACAGGGGCTAGGC 62.177 72.222 8.00 8.00 0.00 3.93
161 162 4.530857 CGGAACAGGGGCTAGGCG 62.531 72.222 10.58 0.00 0.00 5.52
162 163 4.176752 GGAACAGGGGCTAGGCGG 62.177 72.222 10.58 5.00 0.00 6.13
163 164 4.176752 GAACAGGGGCTAGGCGGG 62.177 72.222 10.58 4.64 0.00 6.13
186 187 6.934048 GGAGACCTTTATTTCATCTTCAGG 57.066 41.667 0.00 0.00 0.00 3.86
187 188 5.825151 GGAGACCTTTATTTCATCTTCAGGG 59.175 44.000 0.00 0.00 0.00 4.45
188 189 6.353082 GGAGACCTTTATTTCATCTTCAGGGA 60.353 42.308 0.00 0.00 0.00 4.20
189 190 6.657875 AGACCTTTATTTCATCTTCAGGGAG 58.342 40.000 0.00 0.00 0.00 4.30
190 191 5.196695 ACCTTTATTTCATCTTCAGGGAGC 58.803 41.667 0.00 0.00 0.00 4.70
191 192 4.582240 CCTTTATTTCATCTTCAGGGAGCC 59.418 45.833 0.00 0.00 0.00 4.70
192 193 2.338577 ATTTCATCTTCAGGGAGCCG 57.661 50.000 0.00 0.00 0.00 5.52
193 194 0.392998 TTTCATCTTCAGGGAGCCGC 60.393 55.000 0.00 0.00 0.00 6.53
194 195 2.203126 CATCTTCAGGGAGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
195 196 3.854669 ATCTTCAGGGAGCCGCCG 61.855 66.667 0.00 0.00 37.63 6.46
212 213 3.760035 GCCGTCTCGCCTTCCTGA 61.760 66.667 0.00 0.00 0.00 3.86
213 214 2.492090 CCGTCTCGCCTTCCTGAG 59.508 66.667 0.00 0.00 0.00 3.35
214 215 2.202676 CGTCTCGCCTTCCTGAGC 60.203 66.667 0.00 0.00 32.20 4.26
215 216 2.973899 GTCTCGCCTTCCTGAGCA 59.026 61.111 0.00 0.00 32.20 4.26
216 217 1.153667 GTCTCGCCTTCCTGAGCAG 60.154 63.158 0.00 0.00 32.20 4.24
227 228 2.633860 CTGAGCAGGACACAAACCC 58.366 57.895 0.00 0.00 0.00 4.11
228 229 0.109342 CTGAGCAGGACACAAACCCT 59.891 55.000 0.00 0.00 0.00 4.34
229 230 1.347707 CTGAGCAGGACACAAACCCTA 59.652 52.381 0.00 0.00 0.00 3.53
230 231 1.771854 TGAGCAGGACACAAACCCTAA 59.228 47.619 0.00 0.00 0.00 2.69
231 232 2.152016 GAGCAGGACACAAACCCTAAC 58.848 52.381 0.00 0.00 0.00 2.34
232 233 1.493022 AGCAGGACACAAACCCTAACA 59.507 47.619 0.00 0.00 0.00 2.41
233 234 2.092103 AGCAGGACACAAACCCTAACAA 60.092 45.455 0.00 0.00 0.00 2.83
234 235 2.691011 GCAGGACACAAACCCTAACAAA 59.309 45.455 0.00 0.00 0.00 2.83
235 236 3.131400 GCAGGACACAAACCCTAACAAAA 59.869 43.478 0.00 0.00 0.00 2.44
236 237 4.678622 CAGGACACAAACCCTAACAAAAC 58.321 43.478 0.00 0.00 0.00 2.43
237 238 4.158764 CAGGACACAAACCCTAACAAAACA 59.841 41.667 0.00 0.00 0.00 2.83
238 239 4.401202 AGGACACAAACCCTAACAAAACAG 59.599 41.667 0.00 0.00 0.00 3.16
239 240 4.440940 GGACACAAACCCTAACAAAACAGG 60.441 45.833 0.00 0.00 0.00 4.00
240 241 4.345854 ACACAAACCCTAACAAAACAGGA 58.654 39.130 0.00 0.00 33.42 3.86
241 242 4.773149 ACACAAACCCTAACAAAACAGGAA 59.227 37.500 0.00 0.00 33.42 3.36
242 243 5.246429 ACACAAACCCTAACAAAACAGGAAA 59.754 36.000 0.00 0.00 33.42 3.13
243 244 6.166982 CACAAACCCTAACAAAACAGGAAAA 58.833 36.000 0.00 0.00 33.42 2.29
244 245 6.651225 CACAAACCCTAACAAAACAGGAAAAA 59.349 34.615 0.00 0.00 33.42 1.94
262 263 3.614159 AAAACGACTAAAAACGGAGCC 57.386 42.857 0.00 0.00 0.00 4.70
263 264 1.516161 AACGACTAAAAACGGAGCCC 58.484 50.000 0.00 0.00 0.00 5.19
264 265 0.683412 ACGACTAAAAACGGAGCCCT 59.317 50.000 0.00 0.00 0.00 5.19
276 277 1.761174 GAGCCCTCCCACTTGTCAA 59.239 57.895 0.00 0.00 0.00 3.18
285 286 5.009631 CCTCCCACTTGTCAATGTTAATCA 58.990 41.667 0.00 0.00 0.00 2.57
293 294 8.533965 CACTTGTCAATGTTAATCAAAACACAG 58.466 33.333 0.00 0.00 41.89 3.66
295 296 9.467258 CTTGTCAATGTTAATCAAAACACAGAT 57.533 29.630 0.00 0.00 41.89 2.90
297 298 9.891828 TGTCAATGTTAATCAAAACACAGATAC 57.108 29.630 0.00 0.00 41.89 2.24
344 348 8.770828 GCGAATTACATAAATGAGGTAGCTTTA 58.229 33.333 0.00 0.00 0.00 1.85
372 376 7.664082 ATTTCGAAGCCATATGATAACTCTG 57.336 36.000 3.65 0.00 0.00 3.35
379 383 7.094508 AGCCATATGATAACTCTGATACTCG 57.905 40.000 3.65 0.00 0.00 4.18
380 384 5.746245 GCCATATGATAACTCTGATACTCGC 59.254 44.000 3.65 0.00 0.00 5.03
384 388 9.196552 CATATGATAACTCTGATACTCGCAAAA 57.803 33.333 0.00 0.00 0.00 2.44
386 390 8.668510 ATGATAACTCTGATACTCGCAAAAAT 57.331 30.769 0.00 0.00 0.00 1.82
422 429 9.545105 TGATAACTCTTTTCTTTAAACACGGTA 57.455 29.630 0.00 0.00 0.00 4.02
425 432 7.242914 ACTCTTTTCTTTAAACACGGTACAG 57.757 36.000 0.00 0.00 0.00 2.74
434 441 1.736645 CACGGTACAGACGCAAGGG 60.737 63.158 0.00 0.00 46.39 3.95
446 453 1.202651 ACGCAAGGGCTCATACATACC 60.203 52.381 0.00 0.00 46.39 2.73
458 467 5.324784 TCATACATACCCGCATACTCATC 57.675 43.478 0.00 0.00 0.00 2.92
467 476 4.225942 ACCCGCATACTCATCCATATGAAT 59.774 41.667 3.65 0.00 41.57 2.57
472 481 5.413523 GCATACTCATCCATATGAATGCACA 59.586 40.000 15.26 0.00 46.44 4.57
476 485 3.884693 TCATCCATATGAATGCACACACC 59.115 43.478 3.65 0.00 39.20 4.16
477 486 2.287769 TCCATATGAATGCACACACCG 58.712 47.619 3.65 0.00 0.00 4.94
478 487 2.016318 CCATATGAATGCACACACCGT 58.984 47.619 3.65 0.00 0.00 4.83
479 488 3.118592 TCCATATGAATGCACACACCGTA 60.119 43.478 3.65 0.00 0.00 4.02
480 489 3.002246 CCATATGAATGCACACACCGTAC 59.998 47.826 3.65 0.00 0.00 3.67
481 490 1.448985 ATGAATGCACACACCGTACC 58.551 50.000 0.00 0.00 0.00 3.34
482 491 0.106894 TGAATGCACACACCGTACCA 59.893 50.000 0.00 0.00 0.00 3.25
483 492 1.271108 TGAATGCACACACCGTACCAT 60.271 47.619 0.00 0.00 0.00 3.55
484 493 1.810151 GAATGCACACACCGTACCATT 59.190 47.619 0.00 0.00 33.70 3.16
485 494 1.164411 ATGCACACACCGTACCATTG 58.836 50.000 0.00 0.00 0.00 2.82
487 496 0.515564 GCACACACCGTACCATTGTC 59.484 55.000 0.00 0.00 0.00 3.18
488 497 1.153353 CACACACCGTACCATTGTCC 58.847 55.000 0.00 0.00 0.00 4.02
489 498 0.035739 ACACACCGTACCATTGTCCC 59.964 55.000 0.00 0.00 0.00 4.46
490 499 0.323629 CACACCGTACCATTGTCCCT 59.676 55.000 0.00 0.00 0.00 4.20
491 500 0.611714 ACACCGTACCATTGTCCCTC 59.388 55.000 0.00 0.00 0.00 4.30
495 504 3.134081 CACCGTACCATTGTCCCTCTAAT 59.866 47.826 0.00 0.00 0.00 1.73
496 505 3.387050 ACCGTACCATTGTCCCTCTAATC 59.613 47.826 0.00 0.00 0.00 1.75
498 507 4.141801 CCGTACCATTGTCCCTCTAATCAA 60.142 45.833 0.00 0.00 0.00 2.57
499 508 5.424757 CGTACCATTGTCCCTCTAATCAAA 58.575 41.667 0.00 0.00 0.00 2.69
501 510 6.542370 CGTACCATTGTCCCTCTAATCAAAAT 59.458 38.462 0.00 0.00 0.00 1.82
585 2261 5.193663 TGATCGGAGAGAATTTGCTAGAG 57.806 43.478 0.00 0.00 43.63 2.43
596 2580 9.974980 AGAGAATTTGCTAGAGTTACTATTAGC 57.025 33.333 16.58 16.58 39.11 3.09
630 2614 4.657013 GGATTCCTGGAAAGAACTGTTCT 58.343 43.478 17.00 17.00 43.15 3.01
734 2719 1.065928 CGCATCTACGTGGACTCCC 59.934 63.158 2.80 0.00 0.00 4.30
909 2898 2.224159 ATCACAGCCGTCCAACCCT 61.224 57.895 0.00 0.00 0.00 4.34
1140 3173 0.317519 CCGCTCGTTTTTGGGTTGTC 60.318 55.000 0.00 0.00 0.00 3.18
1305 3365 0.723981 GCTTGTCTGGTTCGATCTGC 59.276 55.000 0.00 0.00 0.00 4.26
1321 3381 2.264794 GCGTGAGATCCGTGGGTT 59.735 61.111 0.00 0.00 0.00 4.11
1355 3466 3.801698 TGAATCTGATCTGCTAAGGTGC 58.198 45.455 0.00 0.00 0.00 5.01
1357 3468 3.749665 ATCTGATCTGCTAAGGTGCTC 57.250 47.619 0.00 0.00 0.00 4.26
1367 3478 1.996191 CTAAGGTGCTCAGACGCTTTC 59.004 52.381 0.00 0.00 0.00 2.62
1368 3479 0.946221 AAGGTGCTCAGACGCTTTCG 60.946 55.000 0.00 0.00 42.43 3.46
1444 3556 1.073216 CGGTTAGCTGCTCACTGTCG 61.073 60.000 4.91 0.85 0.00 4.35
1460 3572 2.673862 CTGTCGTAGTGTCGTGAGATCT 59.326 50.000 0.00 0.00 45.19 2.75
1462 3574 3.615937 TGTCGTAGTGTCGTGAGATCTAC 59.384 47.826 0.00 0.00 45.19 2.59
1463 3575 3.864583 GTCGTAGTGTCGTGAGATCTACT 59.135 47.826 0.00 0.00 45.19 2.57
1464 3576 4.329528 GTCGTAGTGTCGTGAGATCTACTT 59.670 45.833 0.00 0.00 45.19 2.24
1497 3671 1.662608 CGGATCTGCTACGCCATCT 59.337 57.895 0.00 0.00 0.00 2.90
1552 3730 0.594602 CTGCTAGCTTGTTTGCAGCA 59.405 50.000 17.23 5.07 44.72 4.41
1553 3731 0.594602 TGCTAGCTTGTTTGCAGCAG 59.405 50.000 17.23 0.00 39.86 4.24
1579 3757 2.528041 GGAACGACCTCACAAGAGTT 57.472 50.000 0.00 0.00 40.40 3.01
1631 3821 7.476667 AGTGAACTGACTATCTTCATTCGTAG 58.523 38.462 0.00 0.00 0.00 3.51
1711 3921 4.385865 CCACAATTATACCAGTAGGCCCAA 60.386 45.833 0.00 0.00 39.06 4.12
1712 3922 4.578928 CACAATTATACCAGTAGGCCCAAC 59.421 45.833 0.00 0.00 39.06 3.77
1727 3937 5.086621 AGGCCCAACAAGAGTTAATTGAAT 58.913 37.500 0.00 0.00 35.85 2.57
1730 3940 6.710295 GGCCCAACAAGAGTTAATTGAATTTT 59.290 34.615 0.00 0.00 35.85 1.82
1765 3976 1.083489 TTTCCGTGCTAGCATTTCCG 58.917 50.000 22.51 18.81 0.00 4.30
1782 3993 3.026707 TCCGTCTCCTCATCAACCATA 57.973 47.619 0.00 0.00 0.00 2.74
1881 4141 6.540083 ACATCAATATCTCCATCATTCTGCA 58.460 36.000 0.00 0.00 0.00 4.41
1951 4254 4.924462 GCGCCTAGCTCTTAAATACCTTAG 59.076 45.833 0.00 0.00 44.04 2.18
1955 4258 7.873505 CGCCTAGCTCTTAAATACCTTAGATTT 59.126 37.037 0.00 0.00 0.00 2.17
1956 4259 8.994170 GCCTAGCTCTTAAATACCTTAGATTTG 58.006 37.037 0.00 0.00 0.00 2.32
1960 4263 9.114952 AGCTCTTAAATACCTTAGATTTGAAGC 57.885 33.333 0.00 0.00 32.41 3.86
1961 4264 8.893727 GCTCTTAAATACCTTAGATTTGAAGCA 58.106 33.333 0.00 0.00 32.47 3.91
1999 4545 4.189231 CCCTGTTATTTCCGTACTGAAGG 58.811 47.826 0.00 0.00 0.00 3.46
2048 4594 5.687285 CCTGTTGTTCTTTGTTTATCTGCAC 59.313 40.000 0.00 0.00 0.00 4.57
2083 4664 2.803956 AGTTGTCTGTCCGACTCCATA 58.196 47.619 0.00 0.00 43.25 2.74
2133 4715 7.867403 CCAATAGTTTTTGTACAGCACTTCATT 59.133 33.333 8.48 2.73 0.00 2.57
2193 4775 0.534412 AGCACGAGAAGAGTGATGGG 59.466 55.000 0.07 0.00 41.83 4.00
2283 4865 2.755103 CCCTGTTACTTTGAAGGATGGC 59.245 50.000 0.00 0.00 30.92 4.40
2448 5030 3.275143 TGACAAGTGTGGTTCAACGAAT 58.725 40.909 0.00 0.00 0.00 3.34
2631 5213 3.956848 AGAAGAGCAAAGCAAACTTCCTT 59.043 39.130 14.65 0.00 36.76 3.36
3213 5804 4.592942 CCATCTTGGAGAAGACATGGAAA 58.407 43.478 0.00 0.00 39.39 3.13
3341 6021 5.761234 TCCGTACATTATATTTGCCCTTCAC 59.239 40.000 0.00 0.00 0.00 3.18
3484 6164 5.246656 TCATTGTAAGGACCGAAGAACCTTA 59.753 40.000 0.00 0.00 42.83 2.69
3507 6192 1.270518 TGTCTCCTCTGTTCAAGCAGC 60.271 52.381 0.00 0.00 36.49 5.25
3508 6193 1.051008 TCTCCTCTGTTCAAGCAGCA 58.949 50.000 0.00 0.00 36.49 4.41
3688 6377 5.106475 GCCAGTGGTATGTTATTTTTGACGA 60.106 40.000 11.74 0.00 0.00 4.20
3698 6387 1.745232 TTTTTGACGACTGCCAGTGT 58.255 45.000 0.00 0.25 0.00 3.55
3742 6454 2.372504 TGAACCAAATGACCGACCCTAA 59.627 45.455 0.00 0.00 0.00 2.69
3743 6455 3.181442 TGAACCAAATGACCGACCCTAAA 60.181 43.478 0.00 0.00 0.00 1.85
3861 6576 2.520979 GAGAAAGAGGATGACACGACG 58.479 52.381 0.00 0.00 0.00 5.12
3863 6578 0.966920 AAAGAGGATGACACGACGGT 59.033 50.000 0.00 0.00 0.00 4.83
3994 6732 3.054655 TGCTGCTACCCCTAGTTTTAAGG 60.055 47.826 0.00 0.00 0.00 2.69
4003 6741 3.869832 CCCTAGTTTTAAGGCGCTAGAAC 59.130 47.826 7.64 4.63 34.46 3.01
4021 6759 2.202756 CTACGAGCCGGTGAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
4101 6846 8.610248 TGTATCAAACGAAACTTGAAAGGATA 57.390 30.769 0.00 0.00 36.43 2.59
4246 8344 7.481483 TCTTTGATTCATAGCATTTTCGAAACG 59.519 33.333 10.79 6.11 0.00 3.60
4260 8358 8.660315 CATTTTCGAAACGCAAAAATACAAAAG 58.340 29.630 10.79 0.00 32.76 2.27
4268 8366 3.993736 GCAAAAATACAAAAGCGGGTCAT 59.006 39.130 0.00 0.00 0.00 3.06
4270 8368 4.864704 AAAATACAAAAGCGGGTCATGT 57.135 36.364 0.00 3.80 0.00 3.21
4271 8369 4.434713 AAATACAAAAGCGGGTCATGTC 57.565 40.909 0.00 0.00 0.00 3.06
4283 8383 3.690460 GGGTCATGTCCTTGAATTCTGT 58.310 45.455 8.93 0.00 0.00 3.41
4292 8392 6.698380 TGTCCTTGAATTCTGTAGGTTAGAC 58.302 40.000 16.34 10.60 0.00 2.59
4297 8397 6.048732 TGAATTCTGTAGGTTAGACATGCA 57.951 37.500 7.05 0.00 0.00 3.96
4364 8464 8.472413 AGGATGGAATTTTTCATCAACATAGTG 58.528 33.333 12.48 0.00 40.94 2.74
4383 8483 1.837090 CAAATCCTCCCCCGGTAGG 59.163 63.158 0.00 4.38 37.24 3.18
4408 11444 6.096564 GGAAAACTTACCTCCTTCGAGATCTA 59.903 42.308 0.00 0.00 38.52 1.98
4415 11451 3.003897 CCTCCTTCGAGATCTACGGAAAG 59.996 52.174 12.54 10.05 38.52 2.62
4418 11454 3.564644 CCTTCGAGATCTACGGAAAGCTA 59.435 47.826 12.54 0.00 0.00 3.32
4420 11456 3.139850 TCGAGATCTACGGAAAGCTAGG 58.860 50.000 12.54 0.00 0.00 3.02
4567 11607 9.646427 GATAGCCTGGTTTATTTGTCTAGATAG 57.354 37.037 0.00 0.00 0.00 2.08
4568 11608 7.676683 AGCCTGGTTTATTTGTCTAGATAGA 57.323 36.000 0.00 0.00 0.00 1.98
4569 11609 8.090788 AGCCTGGTTTATTTGTCTAGATAGAA 57.909 34.615 0.00 0.00 33.47 2.10
4570 11610 8.718656 AGCCTGGTTTATTTGTCTAGATAGAAT 58.281 33.333 0.00 0.00 33.47 2.40
4571 11611 9.998106 GCCTGGTTTATTTGTCTAGATAGAATA 57.002 33.333 0.00 0.00 33.47 1.75
4783 11954 4.578928 CCCCTTGGTATTGGAATTTACGAG 59.421 45.833 0.00 0.00 0.00 4.18
4790 11961 8.851541 TGGTATTGGAATTTACGAGTAACTTT 57.148 30.769 0.00 0.00 0.00 2.66
4842 12013 4.895961 AGTTTCTAAAGTACTCCTGTGCC 58.104 43.478 0.00 0.00 0.00 5.01
4843 12014 3.587797 TTCTAAAGTACTCCTGTGCCG 57.412 47.619 0.00 0.00 0.00 5.69
4844 12015 2.522185 TCTAAAGTACTCCTGTGCCGT 58.478 47.619 0.00 0.00 0.00 5.68
4846 12017 4.081406 TCTAAAGTACTCCTGTGCCGTAA 58.919 43.478 0.00 0.00 0.00 3.18
4848 12019 3.975168 AAGTACTCCTGTGCCGTAATT 57.025 42.857 0.00 0.00 0.00 1.40
4849 12020 3.521947 AGTACTCCTGTGCCGTAATTC 57.478 47.619 0.00 0.00 0.00 2.17
4850 12021 2.829720 AGTACTCCTGTGCCGTAATTCA 59.170 45.455 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.326583 TCCTTCCAACCTACGATATTCTTCAT 59.673 38.462 0.00 0.00 0.00 2.57
1 2 5.659525 TCCTTCCAACCTACGATATTCTTCA 59.340 40.000 0.00 0.00 0.00 3.02
2 3 6.158023 TCCTTCCAACCTACGATATTCTTC 57.842 41.667 0.00 0.00 0.00 2.87
3 4 6.749036 ATCCTTCCAACCTACGATATTCTT 57.251 37.500 0.00 0.00 0.00 2.52
4 5 6.326583 TGAATCCTTCCAACCTACGATATTCT 59.673 38.462 0.00 0.00 0.00 2.40
5 6 6.522054 TGAATCCTTCCAACCTACGATATTC 58.478 40.000 0.00 0.00 0.00 1.75
6 7 6.494666 TGAATCCTTCCAACCTACGATATT 57.505 37.500 0.00 0.00 0.00 1.28
7 8 6.289064 GTTGAATCCTTCCAACCTACGATAT 58.711 40.000 0.00 0.00 37.32 1.63
8 9 5.667466 GTTGAATCCTTCCAACCTACGATA 58.333 41.667 0.00 0.00 37.32 2.92
9 10 4.514401 GTTGAATCCTTCCAACCTACGAT 58.486 43.478 0.00 0.00 37.32 3.73
10 11 3.934068 GTTGAATCCTTCCAACCTACGA 58.066 45.455 0.00 0.00 37.32 3.43
16 17 2.194201 TCGGGTTGAATCCTTCCAAC 57.806 50.000 0.00 0.00 41.24 3.77
17 18 2.373836 TCTTCGGGTTGAATCCTTCCAA 59.626 45.455 0.00 0.00 35.63 3.53
18 19 1.982226 TCTTCGGGTTGAATCCTTCCA 59.018 47.619 0.00 0.00 35.63 3.53
19 20 2.290071 TGTCTTCGGGTTGAATCCTTCC 60.290 50.000 0.00 0.00 35.63 3.46
20 21 2.742589 GTGTCTTCGGGTTGAATCCTTC 59.257 50.000 0.00 0.00 35.63 3.46
21 22 2.105821 TGTGTCTTCGGGTTGAATCCTT 59.894 45.455 0.00 0.00 35.63 3.36
22 23 1.697432 TGTGTCTTCGGGTTGAATCCT 59.303 47.619 0.00 0.00 35.63 3.24
23 24 1.804748 GTGTGTCTTCGGGTTGAATCC 59.195 52.381 0.00 0.00 35.63 3.01
24 25 1.459592 CGTGTGTCTTCGGGTTGAATC 59.540 52.381 0.00 0.00 35.63 2.52
25 26 1.069513 TCGTGTGTCTTCGGGTTGAAT 59.930 47.619 0.00 0.00 35.63 2.57
26 27 0.460722 TCGTGTGTCTTCGGGTTGAA 59.539 50.000 0.00 0.00 34.74 2.69
27 28 0.460722 TTCGTGTGTCTTCGGGTTGA 59.539 50.000 0.00 0.00 0.00 3.18
28 29 0.580104 GTTCGTGTGTCTTCGGGTTG 59.420 55.000 0.00 0.00 0.00 3.77
29 30 0.872881 CGTTCGTGTGTCTTCGGGTT 60.873 55.000 0.00 0.00 0.00 4.11
30 31 1.299620 CGTTCGTGTGTCTTCGGGT 60.300 57.895 0.00 0.00 0.00 5.28
31 32 0.040157 TACGTTCGTGTGTCTTCGGG 60.040 55.000 8.14 0.00 0.00 5.14
32 33 1.069703 TCTACGTTCGTGTGTCTTCGG 60.070 52.381 8.14 0.00 0.00 4.30
33 34 1.967908 GTCTACGTTCGTGTGTCTTCG 59.032 52.381 8.14 0.00 0.00 3.79
34 35 1.967908 CGTCTACGTTCGTGTGTCTTC 59.032 52.381 8.14 0.00 34.11 2.87
35 36 1.599071 TCGTCTACGTTCGTGTGTCTT 59.401 47.619 8.14 0.00 40.80 3.01
36 37 1.220529 TCGTCTACGTTCGTGTGTCT 58.779 50.000 8.14 0.00 40.80 3.41
37 38 1.705559 GTTCGTCTACGTTCGTGTGTC 59.294 52.381 8.14 0.00 40.80 3.67
38 39 1.063912 TGTTCGTCTACGTTCGTGTGT 59.936 47.619 8.14 0.00 40.80 3.72
39 40 1.745566 TGTTCGTCTACGTTCGTGTG 58.254 50.000 8.14 1.60 40.80 3.82
40 41 2.111756 GTTGTTCGTCTACGTTCGTGT 58.888 47.619 8.14 0.00 40.80 4.49
41 42 1.119497 CGTTGTTCGTCTACGTTCGTG 59.881 52.381 8.14 0.00 39.58 4.35
42 43 1.003972 TCGTTGTTCGTCTACGTTCGT 60.004 47.619 0.00 2.91 43.41 3.85
43 44 1.376856 GTCGTTGTTCGTCTACGTTCG 59.623 52.381 0.00 0.00 43.41 3.95
44 45 1.376856 CGTCGTTGTTCGTCTACGTTC 59.623 52.381 0.00 0.00 43.41 3.95
45 46 1.003972 TCGTCGTTGTTCGTCTACGTT 60.004 47.619 0.00 0.00 43.41 3.99
46 47 0.581529 TCGTCGTTGTTCGTCTACGT 59.418 50.000 2.02 0.00 43.41 3.57
47 48 1.136529 TCTCGTCGTTGTTCGTCTACG 60.137 52.381 0.00 0.00 44.05 3.51
48 49 2.584166 TCTCGTCGTTGTTCGTCTAC 57.416 50.000 0.00 0.00 40.80 2.59
49 50 2.738314 TGATCTCGTCGTTGTTCGTCTA 59.262 45.455 0.00 0.00 40.80 2.59
50 51 1.534163 TGATCTCGTCGTTGTTCGTCT 59.466 47.619 0.00 0.00 40.80 4.18
51 52 1.905687 CTGATCTCGTCGTTGTTCGTC 59.094 52.381 0.00 0.00 40.80 4.20
52 53 1.534163 TCTGATCTCGTCGTTGTTCGT 59.466 47.619 0.00 0.00 40.80 3.85
53 54 2.169974 CTCTGATCTCGTCGTTGTTCG 58.830 52.381 0.00 0.00 41.41 3.95
54 55 1.914700 GCTCTGATCTCGTCGTTGTTC 59.085 52.381 0.00 0.00 0.00 3.18
55 56 1.269723 TGCTCTGATCTCGTCGTTGTT 59.730 47.619 0.00 0.00 0.00 2.83
56 57 0.881796 TGCTCTGATCTCGTCGTTGT 59.118 50.000 0.00 0.00 0.00 3.32
57 58 1.982612 TTGCTCTGATCTCGTCGTTG 58.017 50.000 0.00 0.00 0.00 4.10
58 59 2.724977 TTTGCTCTGATCTCGTCGTT 57.275 45.000 0.00 0.00 0.00 3.85
59 60 2.480416 GGATTTGCTCTGATCTCGTCGT 60.480 50.000 0.00 0.00 0.00 4.34
60 61 2.123342 GGATTTGCTCTGATCTCGTCG 58.877 52.381 0.00 0.00 0.00 5.12
61 62 2.863137 GTGGATTTGCTCTGATCTCGTC 59.137 50.000 0.00 0.00 0.00 4.20
62 63 2.419297 GGTGGATTTGCTCTGATCTCGT 60.419 50.000 0.00 0.00 0.00 4.18
63 64 2.208431 GGTGGATTTGCTCTGATCTCG 58.792 52.381 0.00 0.00 0.00 4.04
64 65 3.272574 TGGTGGATTTGCTCTGATCTC 57.727 47.619 0.00 0.00 0.00 2.75
65 66 3.726557 TTGGTGGATTTGCTCTGATCT 57.273 42.857 0.00 0.00 0.00 2.75
66 67 4.789012 TTTTGGTGGATTTGCTCTGATC 57.211 40.909 0.00 0.00 0.00 2.92
67 68 5.750352 ATTTTTGGTGGATTTGCTCTGAT 57.250 34.783 0.00 0.00 0.00 2.90
68 69 6.009589 TCTATTTTTGGTGGATTTGCTCTGA 58.990 36.000 0.00 0.00 0.00 3.27
69 70 6.271488 TCTATTTTTGGTGGATTTGCTCTG 57.729 37.500 0.00 0.00 0.00 3.35
70 71 6.097412 GGATCTATTTTTGGTGGATTTGCTCT 59.903 38.462 0.00 0.00 0.00 4.09
71 72 6.276091 GGATCTATTTTTGGTGGATTTGCTC 58.724 40.000 0.00 0.00 0.00 4.26
72 73 5.163519 CGGATCTATTTTTGGTGGATTTGCT 60.164 40.000 0.00 0.00 0.00 3.91
73 74 5.043248 CGGATCTATTTTTGGTGGATTTGC 58.957 41.667 0.00 0.00 0.00 3.68
74 75 5.043248 GCGGATCTATTTTTGGTGGATTTG 58.957 41.667 0.00 0.00 0.00 2.32
75 76 4.099419 GGCGGATCTATTTTTGGTGGATTT 59.901 41.667 0.00 0.00 0.00 2.17
76 77 3.636764 GGCGGATCTATTTTTGGTGGATT 59.363 43.478 0.00 0.00 0.00 3.01
77 78 3.222603 GGCGGATCTATTTTTGGTGGAT 58.777 45.455 0.00 0.00 0.00 3.41
78 79 2.650322 GGCGGATCTATTTTTGGTGGA 58.350 47.619 0.00 0.00 0.00 4.02
79 80 1.333619 CGGCGGATCTATTTTTGGTGG 59.666 52.381 0.00 0.00 0.00 4.61
80 81 1.333619 CCGGCGGATCTATTTTTGGTG 59.666 52.381 24.41 0.00 0.00 4.17
81 82 1.210967 TCCGGCGGATCTATTTTTGGT 59.789 47.619 27.46 0.00 0.00 3.67
82 83 1.873591 CTCCGGCGGATCTATTTTTGG 59.126 52.381 31.23 9.76 0.00 3.28
83 84 2.544267 GTCTCCGGCGGATCTATTTTTG 59.456 50.000 31.23 14.46 0.00 2.44
84 85 2.169769 TGTCTCCGGCGGATCTATTTTT 59.830 45.455 31.23 0.00 0.00 1.94
85 86 1.760613 TGTCTCCGGCGGATCTATTTT 59.239 47.619 31.23 0.00 0.00 1.82
86 87 1.068741 GTGTCTCCGGCGGATCTATTT 59.931 52.381 31.23 0.00 0.00 1.40
87 88 0.674534 GTGTCTCCGGCGGATCTATT 59.325 55.000 31.23 0.00 0.00 1.73
88 89 0.467474 TGTGTCTCCGGCGGATCTAT 60.467 55.000 31.23 0.00 0.00 1.98
89 90 1.077285 TGTGTCTCCGGCGGATCTA 60.077 57.895 31.23 15.38 0.00 1.98
90 91 2.362503 TGTGTCTCCGGCGGATCT 60.363 61.111 31.23 0.00 0.00 2.75
91 92 2.202756 GTGTGTCTCCGGCGGATC 60.203 66.667 31.23 24.22 0.00 3.36
92 93 3.771160 GGTGTGTCTCCGGCGGAT 61.771 66.667 31.23 0.00 0.00 4.18
93 94 4.988716 AGGTGTGTCTCCGGCGGA 62.989 66.667 29.14 29.14 0.00 5.54
94 95 4.436998 GAGGTGTGTCTCCGGCGG 62.437 72.222 22.51 22.51 0.00 6.13
95 96 4.436998 GGAGGTGTGTCTCCGGCG 62.437 72.222 0.00 0.00 43.19 6.46
100 101 1.664965 GCGTGTGGAGGTGTGTCTC 60.665 63.158 0.00 0.00 0.00 3.36
101 102 2.421739 GCGTGTGGAGGTGTGTCT 59.578 61.111 0.00 0.00 0.00 3.41
102 103 2.665185 GGCGTGTGGAGGTGTGTC 60.665 66.667 0.00 0.00 0.00 3.67
103 104 4.250305 GGGCGTGTGGAGGTGTGT 62.250 66.667 0.00 0.00 0.00 3.72
104 105 4.248842 TGGGCGTGTGGAGGTGTG 62.249 66.667 0.00 0.00 0.00 3.82
105 106 4.250305 GTGGGCGTGTGGAGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
108 109 4.263572 TTGGTGGGCGTGTGGAGG 62.264 66.667 0.00 0.00 0.00 4.30
109 110 2.978010 GTTGGTGGGCGTGTGGAG 60.978 66.667 0.00 0.00 0.00 3.86
110 111 4.920112 CGTTGGTGGGCGTGTGGA 62.920 66.667 0.00 0.00 0.00 4.02
111 112 4.920112 TCGTTGGTGGGCGTGTGG 62.920 66.667 0.00 0.00 0.00 4.17
112 113 2.668212 ATCGTTGGTGGGCGTGTG 60.668 61.111 0.00 0.00 0.00 3.82
113 114 2.668212 CATCGTTGGTGGGCGTGT 60.668 61.111 0.00 0.00 0.00 4.49
114 115 4.101790 GCATCGTTGGTGGGCGTG 62.102 66.667 0.00 0.00 0.00 5.34
115 116 2.852495 CTAGCATCGTTGGTGGGCGT 62.852 60.000 8.40 0.00 34.79 5.68
116 117 2.125310 TAGCATCGTTGGTGGGCG 60.125 61.111 8.40 0.00 34.79 6.13
117 118 1.090052 GTCTAGCATCGTTGGTGGGC 61.090 60.000 8.40 3.19 34.79 5.36
118 119 0.806102 CGTCTAGCATCGTTGGTGGG 60.806 60.000 8.40 2.07 34.79 4.61
119 120 2.665777 CGTCTAGCATCGTTGGTGG 58.334 57.895 8.40 5.61 34.79 4.61
131 132 4.124351 TTCCGGCGGTGCGTCTAG 62.124 66.667 27.32 0.00 0.00 2.43
132 133 4.424566 GTTCCGGCGGTGCGTCTA 62.425 66.667 27.32 0.36 0.00 2.59
142 143 4.176752 CCTAGCCCCTGTTCCGGC 62.177 72.222 0.00 0.00 46.09 6.13
143 144 4.176752 GCCTAGCCCCTGTTCCGG 62.177 72.222 0.00 0.00 0.00 5.14
144 145 4.530857 CGCCTAGCCCCTGTTCCG 62.531 72.222 0.00 0.00 0.00 4.30
145 146 4.176752 CCGCCTAGCCCCTGTTCC 62.177 72.222 0.00 0.00 0.00 3.62
146 147 4.176752 CCCGCCTAGCCCCTGTTC 62.177 72.222 0.00 0.00 0.00 3.18
153 154 4.862823 AGGTCTCCCCGCCTAGCC 62.863 72.222 0.00 0.00 38.74 3.93
154 155 1.047034 TAAAGGTCTCCCCGCCTAGC 61.047 60.000 0.00 0.00 38.74 3.42
155 156 1.718280 ATAAAGGTCTCCCCGCCTAG 58.282 55.000 0.00 0.00 38.74 3.02
156 157 2.185663 AATAAAGGTCTCCCCGCCTA 57.814 50.000 0.00 0.00 38.74 3.93
157 158 1.212195 GAAATAAAGGTCTCCCCGCCT 59.788 52.381 0.00 0.00 38.74 5.52
158 159 1.064979 TGAAATAAAGGTCTCCCCGCC 60.065 52.381 0.00 0.00 38.74 6.13
159 160 2.413310 TGAAATAAAGGTCTCCCCGC 57.587 50.000 0.00 0.00 38.74 6.13
160 161 4.423625 AGATGAAATAAAGGTCTCCCCG 57.576 45.455 0.00 0.00 38.74 5.73
161 162 5.755849 TGAAGATGAAATAAAGGTCTCCCC 58.244 41.667 0.00 0.00 0.00 4.81
162 163 5.825151 CCTGAAGATGAAATAAAGGTCTCCC 59.175 44.000 0.00 0.00 0.00 4.30
163 164 5.825151 CCCTGAAGATGAAATAAAGGTCTCC 59.175 44.000 0.00 0.00 0.00 3.71
164 165 6.653989 TCCCTGAAGATGAAATAAAGGTCTC 58.346 40.000 0.00 0.00 0.00 3.36
165 166 6.642733 TCCCTGAAGATGAAATAAAGGTCT 57.357 37.500 0.00 0.00 0.00 3.85
166 167 5.298026 GCTCCCTGAAGATGAAATAAAGGTC 59.702 44.000 0.00 0.00 0.00 3.85
167 168 5.196695 GCTCCCTGAAGATGAAATAAAGGT 58.803 41.667 0.00 0.00 0.00 3.50
168 169 4.582240 GGCTCCCTGAAGATGAAATAAAGG 59.418 45.833 0.00 0.00 0.00 3.11
169 170 4.274459 CGGCTCCCTGAAGATGAAATAAAG 59.726 45.833 0.00 0.00 0.00 1.85
170 171 4.199310 CGGCTCCCTGAAGATGAAATAAA 58.801 43.478 0.00 0.00 0.00 1.40
171 172 3.808728 CGGCTCCCTGAAGATGAAATAA 58.191 45.455 0.00 0.00 0.00 1.40
172 173 2.485479 GCGGCTCCCTGAAGATGAAATA 60.485 50.000 0.00 0.00 0.00 1.40
173 174 1.748591 GCGGCTCCCTGAAGATGAAAT 60.749 52.381 0.00 0.00 0.00 2.17
174 175 0.392998 GCGGCTCCCTGAAGATGAAA 60.393 55.000 0.00 0.00 0.00 2.69
175 176 1.221840 GCGGCTCCCTGAAGATGAA 59.778 57.895 0.00 0.00 0.00 2.57
176 177 2.735772 GGCGGCTCCCTGAAGATGA 61.736 63.158 0.00 0.00 0.00 2.92
177 178 2.203126 GGCGGCTCCCTGAAGATG 60.203 66.667 0.00 0.00 0.00 2.90
178 179 3.854669 CGGCGGCTCCCTGAAGAT 61.855 66.667 7.61 0.00 0.00 2.40
196 197 2.492090 CTCAGGAAGGCGAGACGG 59.508 66.667 0.00 0.00 0.00 4.79
197 198 2.202676 GCTCAGGAAGGCGAGACG 60.203 66.667 0.00 0.00 0.00 4.18
198 199 1.153667 CTGCTCAGGAAGGCGAGAC 60.154 63.158 0.00 0.00 0.00 3.36
199 200 3.292656 CTGCTCAGGAAGGCGAGA 58.707 61.111 0.00 0.00 0.00 4.04
209 210 0.109342 AGGGTTTGTGTCCTGCTCAG 59.891 55.000 0.00 0.00 31.11 3.35
210 211 1.429930 TAGGGTTTGTGTCCTGCTCA 58.570 50.000 0.00 0.00 34.75 4.26
211 212 2.152016 GTTAGGGTTTGTGTCCTGCTC 58.848 52.381 0.00 0.00 34.75 4.26
212 213 1.493022 TGTTAGGGTTTGTGTCCTGCT 59.507 47.619 0.00 0.00 34.75 4.24
213 214 1.975660 TGTTAGGGTTTGTGTCCTGC 58.024 50.000 0.00 0.00 34.75 4.85
214 215 4.158764 TGTTTTGTTAGGGTTTGTGTCCTG 59.841 41.667 0.00 0.00 34.75 3.86
215 216 4.345854 TGTTTTGTTAGGGTTTGTGTCCT 58.654 39.130 0.00 0.00 37.18 3.85
216 217 4.440940 CCTGTTTTGTTAGGGTTTGTGTCC 60.441 45.833 0.00 0.00 0.00 4.02
217 218 4.399934 TCCTGTTTTGTTAGGGTTTGTGTC 59.600 41.667 0.00 0.00 34.76 3.67
218 219 4.345854 TCCTGTTTTGTTAGGGTTTGTGT 58.654 39.130 0.00 0.00 34.76 3.72
219 220 4.993029 TCCTGTTTTGTTAGGGTTTGTG 57.007 40.909 0.00 0.00 34.76 3.33
220 221 6.361768 TTTTCCTGTTTTGTTAGGGTTTGT 57.638 33.333 0.00 0.00 34.76 2.83
241 242 3.243168 GGGCTCCGTTTTTAGTCGTTTTT 60.243 43.478 0.00 0.00 0.00 1.94
242 243 2.291465 GGGCTCCGTTTTTAGTCGTTTT 59.709 45.455 0.00 0.00 0.00 2.43
243 244 1.875514 GGGCTCCGTTTTTAGTCGTTT 59.124 47.619 0.00 0.00 0.00 3.60
244 245 1.071228 AGGGCTCCGTTTTTAGTCGTT 59.929 47.619 0.00 0.00 0.00 3.85
245 246 0.683412 AGGGCTCCGTTTTTAGTCGT 59.317 50.000 0.00 0.00 0.00 4.34
246 247 1.356938 GAGGGCTCCGTTTTTAGTCG 58.643 55.000 0.00 0.00 0.00 4.18
247 248 1.735386 GGAGGGCTCCGTTTTTAGTC 58.265 55.000 0.00 0.00 40.36 2.59
248 249 3.950869 GGAGGGCTCCGTTTTTAGT 57.049 52.632 0.00 0.00 40.36 2.24
258 259 0.329596 ATTGACAAGTGGGAGGGCTC 59.670 55.000 0.00 0.00 0.00 4.70
259 260 0.038744 CATTGACAAGTGGGAGGGCT 59.961 55.000 0.00 0.00 0.00 5.19
260 261 0.251341 ACATTGACAAGTGGGAGGGC 60.251 55.000 0.00 0.00 0.00 5.19
261 262 2.292828 AACATTGACAAGTGGGAGGG 57.707 50.000 0.00 0.00 0.00 4.30
262 263 5.009631 TGATTAACATTGACAAGTGGGAGG 58.990 41.667 0.00 0.00 0.00 4.30
263 264 6.573664 TTGATTAACATTGACAAGTGGGAG 57.426 37.500 0.00 0.00 0.00 4.30
264 265 6.968263 TTTGATTAACATTGACAAGTGGGA 57.032 33.333 0.00 0.00 0.00 4.37
285 286 6.347079 CCGACGTTTACATGTATCTGTGTTTT 60.347 38.462 6.36 0.00 0.00 2.43
293 294 6.605849 TCTATAGCCGACGTTTACATGTATC 58.394 40.000 6.36 0.13 0.00 2.24
295 296 5.561532 GCTCTATAGCCGACGTTTACATGTA 60.562 44.000 0.08 0.08 43.40 2.29
297 298 3.669122 GCTCTATAGCCGACGTTTACATG 59.331 47.826 0.00 0.00 43.40 3.21
299 300 2.286595 CGCTCTATAGCCGACGTTTACA 60.287 50.000 6.76 0.00 46.68 2.41
302 303 1.019673 TCGCTCTATAGCCGACGTTT 58.980 50.000 10.13 0.00 46.68 3.60
303 304 1.019673 TTCGCTCTATAGCCGACGTT 58.980 50.000 12.80 0.00 46.68 3.99
305 306 2.333389 AATTCGCTCTATAGCCGACG 57.667 50.000 12.80 6.15 46.68 5.12
351 355 6.596309 ATCAGAGTTATCATATGGCTTCGA 57.404 37.500 2.13 0.00 0.00 3.71
352 356 7.542890 AGTATCAGAGTTATCATATGGCTTCG 58.457 38.462 2.13 0.00 0.00 3.79
419 426 1.448013 GAGCCCTTGCGTCTGTACC 60.448 63.158 0.00 0.00 44.33 3.34
420 427 0.108138 ATGAGCCCTTGCGTCTGTAC 60.108 55.000 0.00 0.00 44.33 2.90
422 429 0.108138 GTATGAGCCCTTGCGTCTGT 60.108 55.000 0.00 0.00 44.33 3.41
425 432 2.135933 GTATGTATGAGCCCTTGCGTC 58.864 52.381 0.00 0.00 44.33 5.19
434 441 3.056821 TGAGTATGCGGGTATGTATGAGC 60.057 47.826 0.00 0.00 0.00 4.26
446 453 4.034858 GCATTCATATGGATGAGTATGCGG 59.965 45.833 25.56 0.00 42.31 5.69
458 467 2.016318 ACGGTGTGTGCATTCATATGG 58.984 47.619 2.13 0.00 32.15 2.74
467 476 0.179043 ACAATGGTACGGTGTGTGCA 60.179 50.000 0.00 0.00 34.44 4.57
472 481 0.611714 GAGGGACAATGGTACGGTGT 59.388 55.000 0.00 0.00 0.00 4.16
476 485 4.665833 TGATTAGAGGGACAATGGTACG 57.334 45.455 0.00 0.00 0.00 3.67
477 486 7.881775 ATTTTGATTAGAGGGACAATGGTAC 57.118 36.000 0.00 0.00 0.00 3.34
478 487 9.573166 CATATTTTGATTAGAGGGACAATGGTA 57.427 33.333 0.00 0.00 0.00 3.25
479 488 8.281531 TCATATTTTGATTAGAGGGACAATGGT 58.718 33.333 0.00 0.00 0.00 3.55
480 489 8.696043 TCATATTTTGATTAGAGGGACAATGG 57.304 34.615 0.00 0.00 0.00 3.16
550 2226 4.556233 TCTCCGATCAAGCATAATAACCG 58.444 43.478 0.00 0.00 0.00 4.44
585 2261 7.201145 TCCGTTCTTCATGAGCTAATAGTAAC 58.799 38.462 0.00 0.00 0.00 2.50
596 2580 3.118629 TCCAGGAATCCGTTCTTCATGAG 60.119 47.826 0.00 0.00 36.73 2.90
650 2634 4.041567 TCTGTCAGTTCTTTAATGGCAGGA 59.958 41.667 7.56 0.00 44.76 3.86
909 2898 3.540687 AGGAGGGTATAAGAAAGGGAGGA 59.459 47.826 0.00 0.00 0.00 3.71
1041 3066 4.681978 AACAGCGCCGAGACCACC 62.682 66.667 2.29 0.00 0.00 4.61
1140 3173 2.452813 CGTCACAAATCTCGCCCCG 61.453 63.158 0.00 0.00 0.00 5.73
1305 3365 0.458543 CTGAACCCACGGATCTCACG 60.459 60.000 0.00 0.00 37.36 4.35
1321 3381 2.562738 TCAGATTCAGAAACTCCGCTGA 59.437 45.455 0.00 0.00 39.24 4.26
1330 3441 6.111382 CACCTTAGCAGATCAGATTCAGAAA 58.889 40.000 0.00 0.00 0.00 2.52
1367 3478 3.121279 ACACTCGAATCGAATTTCACACG 59.879 43.478 6.84 0.00 34.74 4.49
1368 3479 4.386230 CACACTCGAATCGAATTTCACAC 58.614 43.478 6.84 0.00 34.74 3.82
1444 3556 7.479897 TCATAAGTAGATCTCACGACACTAC 57.520 40.000 0.00 0.00 34.99 2.73
1518 3696 3.580193 CAGCTGCGGCATGCCTAC 61.580 66.667 33.07 24.71 45.60 3.18
1536 3714 3.132629 CATCTGCTGCAAACAAGCTAG 57.867 47.619 3.02 0.00 34.99 3.42
1579 3757 8.311109 TCTCAAAACATACTACATGCTCACTTA 58.689 33.333 0.00 0.00 0.00 2.24
1586 3764 7.364522 TCACTTCTCAAAACATACTACATGC 57.635 36.000 0.00 0.00 0.00 4.06
1590 3768 8.488764 GTCAGTTCACTTCTCAAAACATACTAC 58.511 37.037 0.00 0.00 0.00 2.73
1730 3940 5.407387 GCACGGAAACTGTACATAGAGAAAA 59.593 40.000 0.00 0.00 0.00 2.29
1751 3962 1.134670 AGGAGACGGAAATGCTAGCAC 60.135 52.381 22.07 7.49 0.00 4.40
1765 3976 9.512588 AATATTTCATATGGTTGATGAGGAGAC 57.487 33.333 2.13 0.00 34.85 3.36
1820 4079 7.764901 ACAATTGCTAGGTAGTAAAGAGCTAAC 59.235 37.037 5.05 0.00 34.19 2.34
1881 4141 7.665559 TGGAGCAACAGTTTTAATCAACTCTAT 59.334 33.333 0.00 0.00 34.60 1.98
1951 4254 7.953710 GCACAAACATAAAAGATGCTTCAAATC 59.046 33.333 2.07 0.00 0.00 2.17
1955 4258 5.229423 GGCACAAACATAAAAGATGCTTCA 58.771 37.500 2.07 0.00 0.00 3.02
1956 4259 4.627035 GGGCACAAACATAAAAGATGCTTC 59.373 41.667 0.00 0.00 0.00 3.86
1960 4263 5.138125 ACAGGGCACAAACATAAAAGATG 57.862 39.130 0.00 0.00 0.00 2.90
1961 4264 5.806654 AACAGGGCACAAACATAAAAGAT 57.193 34.783 0.00 0.00 0.00 2.40
1964 4510 6.931840 GGAAATAACAGGGCACAAACATAAAA 59.068 34.615 0.00 0.00 0.00 1.52
1999 4545 6.315642 GCCTAGGTTTAACACAGAAATCCTAC 59.684 42.308 11.31 0.00 0.00 3.18
2083 4664 6.048509 GTGGAACAACAAATTTTGACAGGAT 58.951 36.000 15.81 0.00 44.16 3.24
2158 4740 2.741553 CGTGCTTCCATACACCTGCATA 60.742 50.000 0.00 0.00 33.09 3.14
2292 4874 0.319900 GCCTCACTTCGAACTGCAGA 60.320 55.000 23.35 0.00 0.00 4.26
2631 5213 1.745087 GGCTCAAAATCATCAGCGGAA 59.255 47.619 0.00 0.00 32.26 4.30
3213 5804 3.891366 CCTTCTCAACATCAAACTTGGGT 59.109 43.478 0.00 0.00 0.00 4.51
3407 6087 3.064958 TGTCGGCGATTTTGTACAAAACA 59.935 39.130 30.66 21.39 42.32 2.83
3455 6135 6.049955 TCTTCGGTCCTTACAATGATCTTT 57.950 37.500 0.00 0.00 0.00 2.52
3484 6164 2.435805 TGCTTGAACAGAGGAGACAAGT 59.564 45.455 0.00 0.00 39.69 3.16
3507 6192 5.967674 GTCATTTTTCAGAGAACACACAGTG 59.032 40.000 0.00 0.00 39.75 3.66
3508 6193 5.647658 TGTCATTTTTCAGAGAACACACAGT 59.352 36.000 0.00 0.00 0.00 3.55
3688 6377 5.118990 CAAGCAGTATATAACACTGGCAGT 58.881 41.667 15.88 15.88 42.99 4.40
3698 6387 7.570132 TCAGGTTTTAGGCAAGCAGTATATAA 58.430 34.615 0.00 0.00 0.00 0.98
3861 6576 3.050275 GACCTTCTGCGTGGCACC 61.050 66.667 12.86 5.60 33.79 5.01
3921 6652 1.266989 CGAGGAGTTCACAAAAAGGCC 59.733 52.381 0.00 0.00 0.00 5.19
3994 6732 1.299240 GGCTCGTAGGTTCTAGCGC 60.299 63.158 0.00 0.00 35.79 5.92
4003 6741 2.202756 GCTTCACCGGCTCGTAGG 60.203 66.667 0.00 0.00 0.00 3.18
4021 6759 2.916716 GACAGCACACAAACAACACAAG 59.083 45.455 0.00 0.00 0.00 3.16
4246 8344 3.385577 TGACCCGCTTTTGTATTTTTGC 58.614 40.909 0.00 0.00 0.00 3.68
4260 8358 1.401905 GAATTCAAGGACATGACCCGC 59.598 52.381 10.77 0.00 0.00 6.13
4268 8366 6.269077 TGTCTAACCTACAGAATTCAAGGACA 59.731 38.462 21.68 14.66 33.16 4.02
4270 8368 6.928348 TGTCTAACCTACAGAATTCAAGGA 57.072 37.500 21.68 5.77 33.16 3.36
4271 8369 6.037610 GCATGTCTAACCTACAGAATTCAAGG 59.962 42.308 16.01 16.01 35.14 3.61
4364 8464 1.148498 CTACCGGGGGAGGATTTGC 59.852 63.158 6.32 0.00 34.73 3.68
4383 8483 4.532314 TCTCGAAGGAGGTAAGTTTTCC 57.468 45.455 0.00 0.00 40.85 3.13
4408 11444 0.905337 ACAGCCTCCTAGCTTTCCGT 60.905 55.000 0.00 0.00 42.61 4.69
4415 11451 2.760385 ACGGGACAGCCTCCTAGC 60.760 66.667 0.00 0.00 39.39 3.42
4418 11454 3.846405 TTGGACGGGACAGCCTCCT 62.846 63.158 0.00 0.00 39.39 3.69
4420 11456 1.026718 CATTTGGACGGGACAGCCTC 61.027 60.000 0.00 0.00 0.00 4.70
4569 11609 8.863086 CCAAATAATTCATTCATGGACCAGTAT 58.137 33.333 0.00 0.00 0.00 2.12
4570 11610 7.201902 GCCAAATAATTCATTCATGGACCAGTA 60.202 37.037 0.00 0.00 0.00 2.74
4571 11611 6.407299 GCCAAATAATTCATTCATGGACCAGT 60.407 38.462 0.00 0.00 0.00 4.00
4572 11612 5.987347 GCCAAATAATTCATTCATGGACCAG 59.013 40.000 0.00 0.00 0.00 4.00
4573 11613 5.451659 CGCCAAATAATTCATTCATGGACCA 60.452 40.000 0.00 0.00 0.00 4.02
4574 11614 4.984161 CGCCAAATAATTCATTCATGGACC 59.016 41.667 0.00 0.00 0.00 4.46
4575 11615 5.687285 GTCGCCAAATAATTCATTCATGGAC 59.313 40.000 0.00 0.00 0.00 4.02
4645 11685 8.449251 AAACAGTCCGTTAGTTAATTAACCAA 57.551 30.769 21.92 13.85 36.59 3.67
4646 11686 8.987890 GTAAACAGTCCGTTAGTTAATTAACCA 58.012 33.333 21.92 8.46 36.59 3.67
4664 11704 5.640357 TCTGAACAACTGAAACGTAAACAGT 59.360 36.000 13.71 13.71 45.02 3.55
4748 11788 1.786441 ACCAAGGGGGAAACATGAGAA 59.214 47.619 0.00 0.00 41.15 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.