Multiple sequence alignment - TraesCS6D01G089900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G089900 chr6D 100.000 8887 0 0 1 8887 55931006 55922120 0.000000e+00 16412.0
1 TraesCS6D01G089900 chr6D 99.083 109 1 0 5059 5167 55925840 55925732 7.040000e-46 196.0
2 TraesCS6D01G089900 chr6D 99.083 109 1 0 5167 5275 55925948 55925840 7.040000e-46 196.0
3 TraesCS6D01G089900 chr6D 92.683 82 6 0 6721 6802 232780406 232780325 1.570000e-22 119.0
4 TraesCS6D01G089900 chr6B 93.996 5213 180 59 3 5167 126143267 126138140 0.000000e+00 7769.0
5 TraesCS6D01G089900 chr6B 95.892 1558 43 10 5167 6707 126138245 126136692 0.000000e+00 2503.0
6 TraesCS6D01G089900 chr6B 95.899 1390 51 6 6796 8180 126136694 126135306 0.000000e+00 2246.0
7 TraesCS6D01G089900 chr6B 92.268 194 14 1 7960 8152 125642997 125642804 3.160000e-69 274.0
8 TraesCS6D01G089900 chr6B 85.714 196 13 7 8246 8437 125642688 125642504 9.110000e-45 193.0
9 TraesCS6D01G089900 chr6A 96.317 2715 54 19 2170 4865 70423957 70421270 0.000000e+00 4418.0
10 TraesCS6D01G089900 chr6A 92.871 2104 113 17 6796 8887 70419009 70416931 0.000000e+00 3020.0
11 TraesCS6D01G089900 chr6A 91.613 2194 116 35 1 2168 70426215 70424064 0.000000e+00 2970.0
12 TraesCS6D01G089900 chr6A 95.061 1316 46 5 5392 6707 70420303 70419007 0.000000e+00 2052.0
13 TraesCS6D01G089900 chr6A 93.529 170 10 1 5167 5335 70420475 70420306 1.480000e-62 252.0
14 TraesCS6D01G089900 chr6A 96.429 56 2 0 4939 4994 70420854 70420799 9.500000e-15 93.5
15 TraesCS6D01G089900 chr6A 100.000 47 0 0 4895 4941 70421262 70421216 4.420000e-13 87.9
16 TraesCS6D01G089900 chr7D 91.667 648 45 8 1 645 530088954 530089595 0.000000e+00 889.0
17 TraesCS6D01G089900 chr7D 84.794 388 51 8 8436 8819 626254222 626254605 5.030000e-102 383.0
18 TraesCS6D01G089900 chr7D 96.774 31 1 0 1369 1399 603848035 603848065 1.600000e-02 52.8
19 TraesCS6D01G089900 chr4A 87.322 702 69 14 1 697 422206301 422206987 0.000000e+00 785.0
20 TraesCS6D01G089900 chr4A 93.243 74 5 0 6732 6805 676876957 676877030 9.430000e-20 110.0
21 TraesCS6D01G089900 chr3B 87.183 710 67 15 1 700 10904745 10904050 0.000000e+00 785.0
22 TraesCS6D01G089900 chr3B 91.026 78 7 0 6721 6798 239906984 239907061 1.220000e-18 106.0
23 TraesCS6D01G089900 chr3B 95.556 45 2 0 6055 6099 181288851 181288807 1.240000e-08 73.1
24 TraesCS6D01G089900 chr5A 87.198 703 73 11 1 700 700467342 700466654 0.000000e+00 784.0
25 TraesCS6D01G089900 chr2A 86.506 704 69 16 1 700 585311011 585311692 0.000000e+00 750.0
26 TraesCS6D01G089900 chr2A 89.286 84 7 2 6732 6815 12003368 12003449 4.390000e-18 104.0
27 TraesCS6D01G089900 chr2A 93.878 49 1 2 6052 6099 777266831 777266878 1.240000e-08 73.1
28 TraesCS6D01G089900 chr1B 86.319 709 74 14 1 700 86949380 86948686 0.000000e+00 750.0
29 TraesCS6D01G089900 chr4B 87.245 392 44 5 8436 8822 450912889 450912499 8.190000e-120 442.0
30 TraesCS6D01G089900 chr4D 87.306 386 43 5 8436 8819 366321231 366320850 3.810000e-118 436.0
31 TraesCS6D01G089900 chr5D 86.458 384 45 5 8436 8815 489685073 489685453 1.790000e-111 414.0
32 TraesCS6D01G089900 chr5D 94.521 73 4 0 6732 6804 33680713 33680785 7.290000e-21 113.0
33 TraesCS6D01G089900 chr5D 95.833 48 0 2 6050 6096 475152477 475152523 9.570000e-10 76.8
34 TraesCS6D01G089900 chr7A 85.052 388 53 4 8436 8820 125683260 125683645 3.010000e-104 390.0
35 TraesCS6D01G089900 chr7A 84.439 392 52 8 8437 8822 156036684 156037072 2.340000e-100 377.0
36 TraesCS6D01G089900 chr1A 85.340 382 47 9 8436 8813 393510812 393511188 3.890000e-103 387.0
37 TraesCS6D01G089900 chr3A 84.675 385 48 8 8438 8819 610515563 610515187 3.030000e-99 374.0
38 TraesCS6D01G089900 chr7B 88.646 229 16 4 472 699 714861458 714861677 4.090000e-68 270.0
39 TraesCS6D01G089900 chr7B 95.918 49 2 0 6052 6100 142285305 142285257 7.400000e-11 80.5
40 TraesCS6D01G089900 chr7B 95.745 47 2 0 6052 6098 142285302 142285348 9.570000e-10 76.8
41 TraesCS6D01G089900 chr3D 93.243 74 5 0 6732 6805 138759847 138759920 9.430000e-20 110.0
42 TraesCS6D01G089900 chr3D 95.556 45 2 0 6055 6099 126949086 126949042 1.240000e-08 73.1
43 TraesCS6D01G089900 chrUn 92.105 76 5 1 6738 6812 344406255 344406180 1.220000e-18 106.0
44 TraesCS6D01G089900 chr5B 90.244 82 7 1 6732 6812 360418750 360418831 1.220000e-18 106.0
45 TraesCS6D01G089900 chr5B 95.833 48 0 2 6050 6096 582392013 582392059 9.570000e-10 76.8
46 TraesCS6D01G089900 chr2D 91.139 79 6 1 6732 6810 289157236 289157313 1.220000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G089900 chr6D 55922120 55931006 8886 True 16412.000000 16412 100.000000 1 8887 1 chr6D.!!$R1 8886
1 TraesCS6D01G089900 chr6B 126135306 126143267 7961 True 4172.666667 7769 95.262333 3 8180 3 chr6B.!!$R2 8177
2 TraesCS6D01G089900 chr6A 70416931 70426215 9284 True 1841.914286 4418 95.117143 1 8887 7 chr6A.!!$R1 8886
3 TraesCS6D01G089900 chr7D 530088954 530089595 641 False 889.000000 889 91.667000 1 645 1 chr7D.!!$F1 644
4 TraesCS6D01G089900 chr4A 422206301 422206987 686 False 785.000000 785 87.322000 1 697 1 chr4A.!!$F1 696
5 TraesCS6D01G089900 chr3B 10904050 10904745 695 True 785.000000 785 87.183000 1 700 1 chr3B.!!$R1 699
6 TraesCS6D01G089900 chr5A 700466654 700467342 688 True 784.000000 784 87.198000 1 700 1 chr5A.!!$R1 699
7 TraesCS6D01G089900 chr2A 585311011 585311692 681 False 750.000000 750 86.506000 1 700 1 chr2A.!!$F2 699
8 TraesCS6D01G089900 chr1B 86948686 86949380 694 True 750.000000 750 86.319000 1 700 1 chr1B.!!$R1 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.105504 TAGCAGCTCTCAGCCCCATA 60.106 55.000 0.00 0.00 43.77 2.74 F
255 269 0.463620 CCCTCTCTGCAGCTACTTCC 59.536 60.000 9.47 0.00 0.00 3.46 F
839 879 1.003580 CTTGGGCTGGCTTCAGTAGAA 59.996 52.381 0.00 0.00 40.51 2.10 F
1839 1906 0.320160 AAGGACCGGTAACTTGCGTC 60.320 55.000 19.87 0.00 0.00 5.19 F
1940 2007 1.250840 ACAATCTTTTGGGGCGCCTC 61.251 55.000 28.56 25.91 37.15 4.70 F
2564 2740 1.694844 TGGACTAGGTGTTCGTGTCA 58.305 50.000 0.00 0.00 0.00 3.58 F
2565 2741 2.033372 TGGACTAGGTGTTCGTGTCAA 58.967 47.619 0.00 0.00 0.00 3.18 F
2566 2742 2.035449 TGGACTAGGTGTTCGTGTCAAG 59.965 50.000 0.00 0.00 0.00 3.02 F
2567 2743 2.035576 GGACTAGGTGTTCGTGTCAAGT 59.964 50.000 0.00 0.00 0.00 3.16 F
2952 3135 2.217429 TTTCGCTTTTGCCTTTGGTC 57.783 45.000 0.00 0.00 43.93 4.02 F
2982 3165 2.362717 GCCTTCTGACGAGCTATTACCT 59.637 50.000 0.00 0.00 0.00 3.08 F
4402 4595 2.551071 CCTTCTGAAGAGTTGGGTGGTC 60.551 54.545 18.68 0.00 0.00 4.02 F
5196 6024 0.687920 GGGCATAAGAGAGGGCTACC 59.312 60.000 0.00 0.00 34.24 3.18 F
6325 7170 1.779221 TGGGAATGTTGATGATGCCC 58.221 50.000 0.00 0.00 34.67 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1485 1551 0.034616 CCTTCTCGGCCTCCATCATC 59.965 60.000 0.00 0.00 0.00 2.92 R
1486 1552 0.399091 TCCTTCTCGGCCTCCATCAT 60.399 55.000 0.00 0.00 0.00 2.45 R
1861 1928 1.070134 GCTGACAGTACAGTGGGACAA 59.930 52.381 3.99 0.00 44.16 3.18 R
3106 3292 1.750778 GTGCTGGGTTCATAATGGTGG 59.249 52.381 0.00 0.00 0.00 4.61 R
3180 3373 5.937165 CACAAATGGAAATAGAATGTGCG 57.063 39.130 0.00 0.00 31.53 5.34 R
4133 4326 5.814705 AGCTATACTTCTGCAAGTTGATGAC 59.185 40.000 7.16 0.00 40.16 3.06 R
4432 4625 6.455780 GCGAACTTCCTTTAGATGTAAGCTTC 60.456 42.308 0.00 0.00 34.84 3.86 R
4610 4803 4.747108 GCGAAGTGATGTTGATATAGCTGT 59.253 41.667 0.00 0.00 0.00 4.40 R
4633 4826 7.042321 AACTGAAGTTGTTCAATGCATTCATTG 60.042 33.333 9.53 11.35 46.17 2.82 R
4997 5822 2.449189 CAACATTTCACACACACACCG 58.551 47.619 0.00 0.00 0.00 4.94 R
5014 5839 7.593875 TTGCATTTGTTTAATCCATAGCAAC 57.406 32.000 0.00 0.00 33.87 4.17 R
6222 7067 0.914551 CGCTATCTGTTTGACGACGG 59.085 55.000 0.00 0.00 0.00 4.79 R
6432 7277 1.168714 CACCTTTGGTAGCTTCTGCC 58.831 55.000 0.00 0.00 34.62 4.85 R
8214 9068 0.099968 CGGCTTGGATGCATCAACAG 59.900 55.000 27.25 19.01 34.04 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 0.105504 TAGCAGCTCTCAGCCCCATA 60.106 55.000 0.00 0.00 43.77 2.74
61 68 3.118775 GCCCCATAAACCTGGATTTTCAC 60.119 47.826 0.00 0.00 38.69 3.18
73 81 2.887152 GGATTTTCACCAGCAAGTCAGT 59.113 45.455 0.00 0.00 0.00 3.41
91 99 3.646162 TCAGTCCTCACAGTTACAATGGT 59.354 43.478 0.00 0.00 0.00 3.55
94 102 5.995282 CAGTCCTCACAGTTACAATGGTTAA 59.005 40.000 0.00 0.00 0.00 2.01
97 105 6.485648 GTCCTCACAGTTACAATGGTTAAACT 59.514 38.462 0.00 0.00 32.52 2.66
98 106 7.658575 GTCCTCACAGTTACAATGGTTAAACTA 59.341 37.037 0.00 0.00 31.20 2.24
99 107 8.212312 TCCTCACAGTTACAATGGTTAAACTAA 58.788 33.333 0.00 0.00 31.20 2.24
125 137 6.418057 ACAATAATCAAGGCAAAAGACCAA 57.582 33.333 0.00 0.00 0.00 3.67
126 138 6.223120 ACAATAATCAAGGCAAAAGACCAAC 58.777 36.000 0.00 0.00 0.00 3.77
134 147 2.547855 GGCAAAAGACCAACCACAATCC 60.548 50.000 0.00 0.00 0.00 3.01
201 214 1.006639 GGGCAGTTTCCCCATCCTAAA 59.993 52.381 0.00 0.00 42.36 1.85
223 237 4.891277 GTGCAACAAATACAATCAGCAC 57.109 40.909 0.00 0.00 43.27 4.40
247 261 1.972872 AACACAAACCCTCTCTGCAG 58.027 50.000 7.63 7.63 0.00 4.41
255 269 0.463620 CCCTCTCTGCAGCTACTTCC 59.536 60.000 9.47 0.00 0.00 3.46
304 319 2.301738 ACCTTGGCAGGGTAGAGGC 61.302 63.158 21.01 0.00 46.01 4.70
366 381 2.982130 CTGTTCCTGTCCCCTCCG 59.018 66.667 0.00 0.00 0.00 4.63
652 681 4.980805 GCCGACACACGCTTCCCA 62.981 66.667 0.00 0.00 41.07 4.37
653 682 2.738521 CCGACACACGCTTCCCAG 60.739 66.667 0.00 0.00 41.07 4.45
750 785 3.814283 CCTGCCAGAGAGAATTAATGCTC 59.186 47.826 14.87 14.87 0.00 4.26
774 814 4.227134 CTGATGGTCTCGGGCCGG 62.227 72.222 27.98 17.02 0.00 6.13
787 827 3.558475 GCCGGGATAACTGGGCTA 58.442 61.111 2.18 0.00 46.45 3.93
788 828 2.067197 GCCGGGATAACTGGGCTAT 58.933 57.895 2.18 0.00 46.45 2.97
791 831 2.816411 CCGGGATAACTGGGCTATAGA 58.184 52.381 3.21 0.00 42.34 1.98
792 832 2.761208 CCGGGATAACTGGGCTATAGAG 59.239 54.545 3.21 0.00 42.34 2.43
839 879 1.003580 CTTGGGCTGGCTTCAGTAGAA 59.996 52.381 0.00 0.00 40.51 2.10
890 935 4.019051 GGAGCAAAAACCCTAACCCTAGTA 60.019 45.833 0.00 0.00 0.00 1.82
891 936 5.175388 AGCAAAAACCCTAACCCTAGTAG 57.825 43.478 0.00 0.00 0.00 2.57
892 937 4.600547 AGCAAAAACCCTAACCCTAGTAGT 59.399 41.667 0.00 0.00 0.00 2.73
992 1043 1.744320 GACCCAGCCAACCAACCAAC 61.744 60.000 0.00 0.00 0.00 3.77
998 1049 1.182667 GCCAACCAACCAACCTATCC 58.817 55.000 0.00 0.00 0.00 2.59
1472 1538 4.501285 AGAGGGGGATCGCGACGA 62.501 66.667 12.93 4.51 41.13 4.20
1487 1553 4.514577 CGACGGCCCTTCGCAGAT 62.515 66.667 8.39 0.00 40.31 2.90
1509 1575 2.428085 GGAGGCCGAGAAGGAGGAC 61.428 68.421 0.00 0.00 45.00 3.85
1513 1579 2.362632 CCGAGAAGGAGGACGGGT 60.363 66.667 0.00 0.00 45.00 5.28
1653 1719 8.190122 GTGATGTAATGGAATGATTAAACTGCA 58.810 33.333 0.00 0.00 0.00 4.41
1657 1723 3.342719 TGGAATGATTAAACTGCAGCGA 58.657 40.909 15.27 0.00 0.00 4.93
1839 1906 0.320160 AAGGACCGGTAACTTGCGTC 60.320 55.000 19.87 0.00 0.00 5.19
1861 1928 7.191551 CGTCATGATTAGATGCACATTTCTTT 58.808 34.615 0.00 0.00 0.00 2.52
1940 2007 1.250840 ACAATCTTTTGGGGCGCCTC 61.251 55.000 28.56 25.91 37.15 4.70
1949 2016 2.121538 GGGGCGCCTCTTTGGATTC 61.122 63.158 28.56 4.74 38.35 2.52
2212 2386 4.072131 TGCTATGGAAGGTTTCTTGTGTC 58.928 43.478 0.00 0.00 32.52 3.67
2348 2522 7.763172 AAATAAACTCAACAAATGTCGCAAA 57.237 28.000 0.00 0.00 0.00 3.68
2397 2571 6.101332 GTGCAGCAATTTCAATCCTTGATTA 58.899 36.000 0.00 0.00 39.84 1.75
2562 2738 2.035576 GAGTTGGACTAGGTGTTCGTGT 59.964 50.000 0.00 0.00 0.00 4.49
2563 2739 2.035576 AGTTGGACTAGGTGTTCGTGTC 59.964 50.000 0.00 0.00 0.00 3.67
2564 2740 1.694844 TGGACTAGGTGTTCGTGTCA 58.305 50.000 0.00 0.00 0.00 3.58
2565 2741 2.033372 TGGACTAGGTGTTCGTGTCAA 58.967 47.619 0.00 0.00 0.00 3.18
2566 2742 2.035449 TGGACTAGGTGTTCGTGTCAAG 59.965 50.000 0.00 0.00 0.00 3.02
2567 2743 2.035576 GGACTAGGTGTTCGTGTCAAGT 59.964 50.000 0.00 0.00 0.00 3.16
2568 2744 3.254166 GGACTAGGTGTTCGTGTCAAGTA 59.746 47.826 0.00 0.00 0.00 2.24
2569 2745 4.082354 GGACTAGGTGTTCGTGTCAAGTAT 60.082 45.833 0.00 0.00 0.00 2.12
2570 2746 5.124457 GGACTAGGTGTTCGTGTCAAGTATA 59.876 44.000 0.00 0.00 0.00 1.47
2711 2887 4.387256 GCTAGTCTTTTCTGCTGTAGTGTG 59.613 45.833 0.00 0.00 0.00 3.82
2774 2950 5.118510 GTGGTTTGTTTTTATTGATGGCTCG 59.881 40.000 0.00 0.00 0.00 5.03
2876 3056 2.941480 AGAGGCATGAATGGATGTTCC 58.059 47.619 0.00 0.00 36.96 3.62
2936 3119 7.765360 TCCTTCACAAATATGCCATCATTTTTC 59.235 33.333 0.00 0.00 33.54 2.29
2952 3135 2.217429 TTTCGCTTTTGCCTTTGGTC 57.783 45.000 0.00 0.00 43.93 4.02
2982 3165 2.362717 GCCTTCTGACGAGCTATTACCT 59.637 50.000 0.00 0.00 0.00 3.08
3039 3222 4.574421 GGCAAATGCAAAAACCAGTAACTT 59.426 37.500 7.80 0.00 44.36 2.66
3087 3270 6.276832 AGCATGCAAAGACAGAAATTACAT 57.723 33.333 21.98 0.00 0.00 2.29
3089 3272 7.156673 AGCATGCAAAGACAGAAATTACATTT 58.843 30.769 21.98 0.00 34.64 2.32
3159 3345 4.338539 GCGCATATGGCTGCTGGC 62.339 66.667 10.40 10.40 40.06 4.85
3180 3373 7.083875 TGGCACTATACTAGTTTTTGCAATC 57.916 36.000 16.23 0.00 36.76 2.67
3441 3634 5.163519 TGGCTTTGAAGTTCCAAGAAAGAAG 60.164 40.000 18.36 3.89 0.00 2.85
3700 3893 8.402798 TGATCCTTTAATTGTTCTGCTGTAAA 57.597 30.769 0.00 0.00 0.00 2.01
3843 4036 5.127031 AGCACAAAAAGAGTAAGAAAGGCAA 59.873 36.000 0.00 0.00 0.00 4.52
4133 4326 2.753989 TGATCGTTGTGTTGCTGTTG 57.246 45.000 0.00 0.00 0.00 3.33
4402 4595 2.551071 CCTTCTGAAGAGTTGGGTGGTC 60.551 54.545 18.68 0.00 0.00 4.02
4432 4625 9.048446 ACAATTCCATTTGTCTTGAAAAATCTG 57.952 29.630 0.00 0.00 34.83 2.90
4610 4803 4.473444 AGAGAAGTTCAAATGGCCAAAGA 58.527 39.130 10.96 5.09 0.00 2.52
4627 4820 5.528690 GCCAAAGACAGCTATATCAACATCA 59.471 40.000 0.00 0.00 0.00 3.07
4633 4826 4.747108 ACAGCTATATCAACATCACTTCGC 59.253 41.667 0.00 0.00 0.00 4.70
4997 5822 5.470098 CCCTACTTGGTTGTGCATATATGTC 59.530 44.000 14.14 7.28 0.00 3.06
5014 5839 1.668237 TGTCGGTGTGTGTGTGAAATG 59.332 47.619 0.00 0.00 0.00 2.32
5022 5847 4.676471 GTGTGTGTGTGAAATGTTGCTATG 59.324 41.667 0.00 0.00 0.00 2.23
5023 5848 4.229096 GTGTGTGTGAAATGTTGCTATGG 58.771 43.478 0.00 0.00 0.00 2.74
5024 5849 4.023279 GTGTGTGTGAAATGTTGCTATGGA 60.023 41.667 0.00 0.00 0.00 3.41
5025 5850 4.766373 TGTGTGTGAAATGTTGCTATGGAT 59.234 37.500 0.00 0.00 0.00 3.41
5026 5851 5.243507 TGTGTGTGAAATGTTGCTATGGATT 59.756 36.000 0.00 0.00 0.00 3.01
5027 5852 6.432472 TGTGTGTGAAATGTTGCTATGGATTA 59.568 34.615 0.00 0.00 0.00 1.75
5081 5909 2.971330 AGATGTGGAGGGCATAAGAGAG 59.029 50.000 0.00 0.00 0.00 3.20
5133 5961 3.394674 TGTCGAACTTGTGCCATTAGA 57.605 42.857 0.00 0.00 0.00 2.10
5134 5962 3.325870 TGTCGAACTTGTGCCATTAGAG 58.674 45.455 0.00 0.00 0.00 2.43
5135 5963 2.673368 GTCGAACTTGTGCCATTAGAGG 59.327 50.000 0.00 0.00 0.00 3.69
5136 5964 2.565391 TCGAACTTGTGCCATTAGAGGA 59.435 45.455 0.00 0.00 0.00 3.71
5137 5965 3.197766 TCGAACTTGTGCCATTAGAGGAT 59.802 43.478 0.00 0.00 0.00 3.24
5138 5966 3.941483 CGAACTTGTGCCATTAGAGGATT 59.059 43.478 0.00 0.00 0.00 3.01
5139 5967 4.201851 CGAACTTGTGCCATTAGAGGATTG 60.202 45.833 0.00 0.00 0.00 2.67
5140 5968 3.019564 ACTTGTGCCATTAGAGGATTGC 58.980 45.455 0.00 0.00 0.00 3.56
5141 5969 2.804986 TGTGCCATTAGAGGATTGCA 57.195 45.000 0.00 0.00 0.00 4.08
5142 5970 3.301794 TGTGCCATTAGAGGATTGCAT 57.698 42.857 0.00 0.00 31.43 3.96
5143 5971 2.953648 TGTGCCATTAGAGGATTGCATG 59.046 45.455 0.00 0.00 31.43 4.06
5144 5972 3.216800 GTGCCATTAGAGGATTGCATGA 58.783 45.455 0.00 0.00 31.43 3.07
5145 5973 3.633525 GTGCCATTAGAGGATTGCATGAA 59.366 43.478 0.00 0.00 31.43 2.57
5146 5974 4.280174 GTGCCATTAGAGGATTGCATGAAT 59.720 41.667 0.00 0.00 31.43 2.57
5147 5975 5.474532 GTGCCATTAGAGGATTGCATGAATA 59.525 40.000 0.00 0.00 31.43 1.75
5148 5976 5.474532 TGCCATTAGAGGATTGCATGAATAC 59.525 40.000 0.00 0.00 0.00 1.89
5149 5977 5.709164 GCCATTAGAGGATTGCATGAATACT 59.291 40.000 0.00 0.00 38.02 2.12
5150 5978 6.208204 GCCATTAGAGGATTGCATGAATACTT 59.792 38.462 0.00 0.00 35.08 2.24
5151 5979 7.255730 GCCATTAGAGGATTGCATGAATACTTT 60.256 37.037 0.00 0.00 35.08 2.66
5152 5980 8.295288 CCATTAGAGGATTGCATGAATACTTTC 58.705 37.037 0.00 0.00 35.08 2.62
5153 5981 9.064706 CATTAGAGGATTGCATGAATACTTTCT 57.935 33.333 0.00 0.00 35.08 2.52
5154 5982 6.939132 AGAGGATTGCATGAATACTTTCTG 57.061 37.500 0.00 0.00 35.08 3.02
5155 5983 6.656902 AGAGGATTGCATGAATACTTTCTGA 58.343 36.000 0.00 0.00 35.08 3.27
5156 5984 6.541641 AGAGGATTGCATGAATACTTTCTGAC 59.458 38.462 0.00 0.00 35.08 3.51
5157 5985 6.182627 AGGATTGCATGAATACTTTCTGACA 58.817 36.000 0.00 0.00 29.92 3.58
5158 5986 6.660521 AGGATTGCATGAATACTTTCTGACAA 59.339 34.615 0.00 0.00 29.92 3.18
5159 5987 7.341256 AGGATTGCATGAATACTTTCTGACAAT 59.659 33.333 0.00 0.00 29.92 2.71
5160 5988 7.434307 GGATTGCATGAATACTTTCTGACAATG 59.566 37.037 0.00 0.00 32.78 2.82
5161 5989 6.822667 TGCATGAATACTTTCTGACAATGT 57.177 33.333 0.00 0.00 32.78 2.71
5162 5990 6.614160 TGCATGAATACTTTCTGACAATGTG 58.386 36.000 0.00 0.00 32.78 3.21
5163 5991 6.430616 TGCATGAATACTTTCTGACAATGTGA 59.569 34.615 0.00 0.00 32.78 3.58
5164 5992 7.121611 TGCATGAATACTTTCTGACAATGTGAT 59.878 33.333 0.00 0.00 32.78 3.06
5165 5993 8.615211 GCATGAATACTTTCTGACAATGTGATA 58.385 33.333 0.00 0.00 32.78 2.15
5167 5995 9.896645 ATGAATACTTTCTGACAATGTGATAGT 57.103 29.630 0.00 0.00 32.78 2.12
5172 6000 8.939201 ACTTTCTGACAATGTGATAGTAGATG 57.061 34.615 0.00 0.00 0.00 2.90
5173 6001 8.535335 ACTTTCTGACAATGTGATAGTAGATGT 58.465 33.333 0.00 0.00 0.00 3.06
5174 6002 8.707938 TTTCTGACAATGTGATAGTAGATGTG 57.292 34.615 0.00 0.00 0.00 3.21
5175 6003 6.809869 TCTGACAATGTGATAGTAGATGTGG 58.190 40.000 0.00 0.00 0.00 4.17
5176 6004 6.607198 TCTGACAATGTGATAGTAGATGTGGA 59.393 38.462 0.00 0.00 0.00 4.02
5177 6005 6.809869 TGACAATGTGATAGTAGATGTGGAG 58.190 40.000 0.00 0.00 0.00 3.86
5178 6006 6.166984 ACAATGTGATAGTAGATGTGGAGG 57.833 41.667 0.00 0.00 0.00 4.30
5179 6007 5.070981 ACAATGTGATAGTAGATGTGGAGGG 59.929 44.000 0.00 0.00 0.00 4.30
5180 6008 2.965831 TGTGATAGTAGATGTGGAGGGC 59.034 50.000 0.00 0.00 0.00 5.19
5181 6009 2.965831 GTGATAGTAGATGTGGAGGGCA 59.034 50.000 0.00 0.00 0.00 5.36
5182 6010 3.580458 GTGATAGTAGATGTGGAGGGCAT 59.420 47.826 0.00 0.00 0.00 4.40
5183 6011 4.772624 GTGATAGTAGATGTGGAGGGCATA 59.227 45.833 0.00 0.00 0.00 3.14
5184 6012 5.246203 GTGATAGTAGATGTGGAGGGCATAA 59.754 44.000 0.00 0.00 0.00 1.90
5185 6013 5.481824 TGATAGTAGATGTGGAGGGCATAAG 59.518 44.000 0.00 0.00 0.00 1.73
5186 6014 3.928754 AGTAGATGTGGAGGGCATAAGA 58.071 45.455 0.00 0.00 0.00 2.10
5187 6015 3.900601 AGTAGATGTGGAGGGCATAAGAG 59.099 47.826 0.00 0.00 0.00 2.85
5188 6016 3.051940 AGATGTGGAGGGCATAAGAGA 57.948 47.619 0.00 0.00 0.00 3.10
5189 6017 2.971330 AGATGTGGAGGGCATAAGAGAG 59.029 50.000 0.00 0.00 0.00 3.20
5190 6018 1.500474 TGTGGAGGGCATAAGAGAGG 58.500 55.000 0.00 0.00 0.00 3.69
5191 6019 0.761802 GTGGAGGGCATAAGAGAGGG 59.238 60.000 0.00 0.00 0.00 4.30
5192 6020 1.056700 TGGAGGGCATAAGAGAGGGC 61.057 60.000 0.00 0.00 0.00 5.19
5193 6021 0.766288 GGAGGGCATAAGAGAGGGCT 60.766 60.000 0.00 0.00 34.24 5.19
5194 6022 1.483307 GGAGGGCATAAGAGAGGGCTA 60.483 57.143 0.00 0.00 34.24 3.93
5195 6023 1.621317 GAGGGCATAAGAGAGGGCTAC 59.379 57.143 0.00 0.00 34.24 3.58
5196 6024 0.687920 GGGCATAAGAGAGGGCTACC 59.312 60.000 0.00 0.00 34.24 3.18
5209 6037 3.150458 GGGCTACCTTTTTACCACTGT 57.850 47.619 0.00 0.00 0.00 3.55
5210 6038 4.290711 GGGCTACCTTTTTACCACTGTA 57.709 45.455 0.00 0.00 0.00 2.74
5211 6039 4.259356 GGGCTACCTTTTTACCACTGTAG 58.741 47.826 0.00 0.00 0.00 2.74
5212 6040 3.688185 GGCTACCTTTTTACCACTGTAGC 59.312 47.826 10.19 10.19 46.39 3.58
5213 6041 4.565028 GGCTACCTTTTTACCACTGTAGCT 60.565 45.833 16.25 0.00 46.36 3.32
5214 6042 4.392138 GCTACCTTTTTACCACTGTAGCTG 59.608 45.833 11.14 0.00 44.69 4.24
5215 6043 3.146847 ACCTTTTTACCACTGTAGCTGC 58.853 45.455 0.00 0.00 0.00 5.25
5216 6044 3.181443 ACCTTTTTACCACTGTAGCTGCT 60.181 43.478 7.57 7.57 0.00 4.24
5217 6045 3.437049 CCTTTTTACCACTGTAGCTGCTC 59.563 47.826 4.91 0.00 0.00 4.26
5218 6046 4.319177 CTTTTTACCACTGTAGCTGCTCT 58.681 43.478 4.91 0.00 0.00 4.09
5219 6047 4.351874 TTTTACCACTGTAGCTGCTCTT 57.648 40.909 4.91 0.00 0.00 2.85
5220 6048 5.477607 TTTTACCACTGTAGCTGCTCTTA 57.522 39.130 4.91 0.00 0.00 2.10
5221 6049 5.677319 TTTACCACTGTAGCTGCTCTTAT 57.323 39.130 4.91 0.00 0.00 1.73
5222 6050 3.533606 ACCACTGTAGCTGCTCTTATG 57.466 47.619 4.91 0.98 0.00 1.90
5223 6051 2.834549 ACCACTGTAGCTGCTCTTATGT 59.165 45.455 4.91 0.00 0.00 2.29
5224 6052 3.118956 ACCACTGTAGCTGCTCTTATGTC 60.119 47.826 4.91 0.00 0.00 3.06
5225 6053 3.111838 CACTGTAGCTGCTCTTATGTCG 58.888 50.000 4.91 0.00 0.00 4.35
5226 6054 3.017442 ACTGTAGCTGCTCTTATGTCGA 58.983 45.455 4.91 0.00 0.00 4.20
5227 6055 3.444034 ACTGTAGCTGCTCTTATGTCGAA 59.556 43.478 4.91 0.00 0.00 3.71
5228 6056 3.770666 TGTAGCTGCTCTTATGTCGAAC 58.229 45.455 4.91 0.00 0.00 3.95
5229 6057 3.444034 TGTAGCTGCTCTTATGTCGAACT 59.556 43.478 4.91 0.00 0.00 3.01
5230 6058 3.601443 AGCTGCTCTTATGTCGAACTT 57.399 42.857 0.00 0.00 0.00 2.66
5231 6059 3.257393 AGCTGCTCTTATGTCGAACTTG 58.743 45.455 0.00 0.00 0.00 3.16
5232 6060 2.996621 GCTGCTCTTATGTCGAACTTGT 59.003 45.455 0.00 0.00 0.00 3.16
5233 6061 3.181526 GCTGCTCTTATGTCGAACTTGTG 60.182 47.826 0.00 0.00 0.00 3.33
5234 6062 2.736721 TGCTCTTATGTCGAACTTGTGC 59.263 45.455 0.00 0.00 0.00 4.57
5235 6063 2.094417 GCTCTTATGTCGAACTTGTGCC 59.906 50.000 0.00 0.00 0.00 5.01
5236 6064 3.325870 CTCTTATGTCGAACTTGTGCCA 58.674 45.455 0.00 0.00 0.00 4.92
5237 6065 3.935203 CTCTTATGTCGAACTTGTGCCAT 59.065 43.478 0.00 0.00 0.00 4.40
5238 6066 4.323417 TCTTATGTCGAACTTGTGCCATT 58.677 39.130 0.00 0.00 0.00 3.16
5239 6067 5.483811 TCTTATGTCGAACTTGTGCCATTA 58.516 37.500 0.00 0.00 0.00 1.90
5240 6068 5.580691 TCTTATGTCGAACTTGTGCCATTAG 59.419 40.000 0.00 0.00 0.00 1.73
5243 6071 2.673368 GTCGAACTTGTGCCATTAGAGG 59.327 50.000 0.00 0.00 0.00 3.69
5331 6159 8.737168 TCTGTTGTTTTGGATATCCTTCTATG 57.263 34.615 22.35 5.33 36.82 2.23
5338 6166 8.470002 GTTTTGGATATCCTTCTATGTTTGCTT 58.530 33.333 22.35 0.00 36.82 3.91
5621 6453 5.728471 TGTTGCAAGAAAACATTTCCTTCA 58.272 33.333 0.00 0.00 32.71 3.02
5699 6531 2.971330 GTCTGATGAGGATGGGTCAGAT 59.029 50.000 7.13 0.00 46.02 2.90
5822 6654 3.209410 ACAGGCAAGTATTCATAGCAGC 58.791 45.455 0.00 0.00 0.00 5.25
5979 6811 9.764363 GTACATTTTCCATATCTGTATCAGTCA 57.236 33.333 0.00 0.00 32.61 3.41
6105 6950 7.048512 GTGTACAGAGGGAGTATTTTATTGCT 58.951 38.462 0.00 0.00 0.00 3.91
6106 6951 7.011482 GTGTACAGAGGGAGTATTTTATTGCTG 59.989 40.741 0.00 0.00 0.00 4.41
6134 6979 6.922407 ACTAACTACGTCTTCTCTTTGAAACC 59.078 38.462 0.00 0.00 33.79 3.27
6222 7067 7.865706 TGTAAAGATAGATTTGAAAGGCTCC 57.134 36.000 0.00 0.00 0.00 4.70
6249 7094 4.683320 CGTCAAACAGATAGCGATGATGAT 59.317 41.667 0.00 0.00 0.00 2.45
6325 7170 1.779221 TGGGAATGTTGATGATGCCC 58.221 50.000 0.00 0.00 34.67 5.36
6432 7277 6.320672 ACAATAAGGCAAAAGATGGAGATGAG 59.679 38.462 0.00 0.00 0.00 2.90
6537 7382 2.007049 GCGAGGATTTTCAAGGAGCGA 61.007 52.381 0.00 0.00 0.00 4.93
6682 7527 6.206498 TGTTGTCTATATGTCGTGTATCAGC 58.794 40.000 0.00 0.00 0.00 4.26
6704 7549 8.075574 TCAGCTAAAATGACACTTGTAATTGTG 58.924 33.333 0.00 0.00 39.80 3.33
6706 7551 9.062524 AGCTAAAATGACACTTGTAATTGTGTA 57.937 29.630 0.00 0.00 45.94 2.90
6707 7552 9.840427 GCTAAAATGACACTTGTAATTGTGTAT 57.160 29.630 0.00 0.00 45.94 2.29
6710 7555 9.677567 AAAATGACACTTGTAATTGTGTATCAC 57.322 29.630 0.00 0.00 45.94 3.06
6711 7556 8.621532 AATGACACTTGTAATTGTGTATCACT 57.378 30.769 0.00 0.00 45.94 3.41
6712 7557 7.652300 TGACACTTGTAATTGTGTATCACTC 57.348 36.000 0.00 0.00 45.94 3.51
6713 7558 6.649141 TGACACTTGTAATTGTGTATCACTCC 59.351 38.462 0.00 0.00 45.94 3.85
6714 7559 5.637810 ACACTTGTAATTGTGTATCACTCCG 59.362 40.000 0.00 0.00 44.40 4.63
6715 7560 5.637810 CACTTGTAATTGTGTATCACTCCGT 59.362 40.000 1.72 0.00 35.11 4.69
6716 7561 6.147164 CACTTGTAATTGTGTATCACTCCGTT 59.853 38.462 1.72 0.00 35.11 4.44
6717 7562 7.329962 CACTTGTAATTGTGTATCACTCCGTTA 59.670 37.037 1.72 0.00 35.11 3.18
6718 7563 7.544566 ACTTGTAATTGTGTATCACTCCGTTAG 59.455 37.037 1.72 0.00 35.11 2.34
6719 7564 5.808540 TGTAATTGTGTATCACTCCGTTAGC 59.191 40.000 1.72 0.00 35.11 3.09
6720 7565 3.945981 TTGTGTATCACTCCGTTAGCA 57.054 42.857 1.72 0.00 35.11 3.49
6721 7566 3.945981 TGTGTATCACTCCGTTAGCAA 57.054 42.857 1.72 0.00 35.11 3.91
6722 7567 4.260139 TGTGTATCACTCCGTTAGCAAA 57.740 40.909 1.72 0.00 35.11 3.68
6723 7568 4.633175 TGTGTATCACTCCGTTAGCAAAA 58.367 39.130 1.72 0.00 35.11 2.44
6724 7569 5.242434 TGTGTATCACTCCGTTAGCAAAAT 58.758 37.500 1.72 0.00 35.11 1.82
6725 7570 5.121611 TGTGTATCACTCCGTTAGCAAAATG 59.878 40.000 1.72 0.00 35.11 2.32
6726 7571 5.350365 GTGTATCACTCCGTTAGCAAAATGA 59.650 40.000 0.00 0.00 0.00 2.57
6727 7572 5.935206 TGTATCACTCCGTTAGCAAAATGAA 59.065 36.000 0.00 0.00 0.00 2.57
6728 7573 6.597672 TGTATCACTCCGTTAGCAAAATGAAT 59.402 34.615 0.00 0.00 0.00 2.57
6729 7574 5.295431 TCACTCCGTTAGCAAAATGAATG 57.705 39.130 0.00 0.00 0.00 2.67
6730 7575 5.000591 TCACTCCGTTAGCAAAATGAATGA 58.999 37.500 0.00 0.00 0.00 2.57
6731 7576 5.471797 TCACTCCGTTAGCAAAATGAATGAA 59.528 36.000 0.00 0.00 0.00 2.57
6732 7577 6.150976 TCACTCCGTTAGCAAAATGAATGAAT 59.849 34.615 0.00 0.00 0.00 2.57
6733 7578 7.335673 TCACTCCGTTAGCAAAATGAATGAATA 59.664 33.333 0.00 0.00 0.00 1.75
6734 7579 7.429340 CACTCCGTTAGCAAAATGAATGAATAC 59.571 37.037 0.00 0.00 0.00 1.89
6735 7580 7.120579 ACTCCGTTAGCAAAATGAATGAATACA 59.879 33.333 0.00 0.00 0.00 2.29
6736 7581 7.247728 TCCGTTAGCAAAATGAATGAATACAC 58.752 34.615 0.00 0.00 0.00 2.90
6737 7582 7.026562 CCGTTAGCAAAATGAATGAATACACA 58.973 34.615 0.00 0.00 0.00 3.72
6738 7583 7.701924 CCGTTAGCAAAATGAATGAATACACAT 59.298 33.333 0.00 0.00 0.00 3.21
6739 7584 8.736742 CGTTAGCAAAATGAATGAATACACATC 58.263 33.333 0.00 0.00 0.00 3.06
6740 7585 9.793252 GTTAGCAAAATGAATGAATACACATCT 57.207 29.630 0.00 0.00 0.00 2.90
6741 7586 9.791820 TTAGCAAAATGAATGAATACACATCTG 57.208 29.630 0.00 0.00 0.00 2.90
6742 7587 7.833786 AGCAAAATGAATGAATACACATCTGT 58.166 30.769 0.00 0.00 0.00 3.41
6743 7588 8.959548 AGCAAAATGAATGAATACACATCTGTA 58.040 29.630 0.00 0.00 37.28 2.74
6744 7589 9.740239 GCAAAATGAATGAATACACATCTGTAT 57.260 29.630 0.00 0.00 44.22 2.29
6753 7598 9.890629 ATGAATACACATCTGTATGTAGTTTGT 57.109 29.630 0.00 0.00 44.70 2.83
6758 7603 8.492673 ACACATCTGTATGTAGTTTGTAATGG 57.507 34.615 0.00 0.00 44.70 3.16
6759 7604 8.318412 ACACATCTGTATGTAGTTTGTAATGGA 58.682 33.333 0.00 0.00 44.70 3.41
6760 7605 9.161629 CACATCTGTATGTAGTTTGTAATGGAA 57.838 33.333 0.00 0.00 44.70 3.53
6761 7606 9.905713 ACATCTGTATGTAGTTTGTAATGGAAT 57.094 29.630 0.00 0.00 44.66 3.01
6764 7609 9.817809 TCTGTATGTAGTTTGTAATGGAATCTC 57.182 33.333 0.00 0.00 0.00 2.75
6765 7610 9.823647 CTGTATGTAGTTTGTAATGGAATCTCT 57.176 33.333 0.00 0.00 0.00 3.10
6793 7638 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
6794 7639 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
6809 7656 7.202139 GGAATGGAGGGAGTAGATCATTAGTTT 60.202 40.741 0.00 0.00 0.00 2.66
6839 7686 4.335315 GCCATTCCGATGAAAGACATACAA 59.665 41.667 0.00 0.00 39.56 2.41
6902 7749 9.535878 GCACTTTCTAGTTAGATAGCTATTTGT 57.464 33.333 7.87 0.00 35.60 2.83
6980 7828 7.593825 ACTTTGACCATCTAATGTTTAACAGC 58.406 34.615 3.63 0.00 0.00 4.40
6983 7831 7.701539 TGACCATCTAATGTTTAACAGCATT 57.298 32.000 3.63 0.00 38.63 3.56
6984 7832 7.537715 TGACCATCTAATGTTTAACAGCATTG 58.462 34.615 3.63 0.00 36.75 2.82
7047 7895 9.736023 GTGTTCTTGTATCAATTGTTTTCTTCT 57.264 29.630 5.13 0.00 0.00 2.85
7333 8184 3.507786 CATCACGGTCACGATACAAAGA 58.492 45.455 0.00 0.00 44.60 2.52
7586 8437 1.906574 ACCAAGGCTGAATACCGAAGA 59.093 47.619 0.00 0.00 0.00 2.87
7824 8675 5.000591 AGAAGTTTCAGAAGAAGCTAAGCC 58.999 41.667 0.00 0.00 43.41 4.35
7832 8683 1.820056 GAAGCTAAGCCCGGAAGCC 60.820 63.158 0.73 0.00 36.92 4.35
7905 8756 3.127548 GTGATGCGTGTGAATCCATTTCT 59.872 43.478 0.00 0.00 35.23 2.52
7918 8769 4.286297 TCCATTTCTGAAGACGGTGAAT 57.714 40.909 0.00 0.00 0.00 2.57
7919 8770 4.651778 TCCATTTCTGAAGACGGTGAATT 58.348 39.130 0.00 0.00 0.00 2.17
8067 8918 9.546428 CAATATTGAACAGTATGAGGATGTACA 57.454 33.333 10.04 0.00 39.69 2.90
8088 8939 0.447801 CAGTTGTATGAACGCCTGCC 59.552 55.000 0.00 0.00 0.00 4.85
8165 9016 7.202526 TGGTATTAGTTCGTAAATTACCCTCG 58.797 38.462 0.00 0.00 0.00 4.63
8189 9043 0.106519 AACTGGTGAGCTTGGCTTGT 60.107 50.000 0.00 0.00 39.88 3.16
8196 9050 0.670162 GAGCTTGGCTTGTTTGCAGA 59.330 50.000 0.00 0.00 39.88 4.26
8207 9061 3.198409 TGTTTGCAGAGCTTCAGAGAA 57.802 42.857 0.00 0.00 0.00 2.87
8208 9062 2.874701 TGTTTGCAGAGCTTCAGAGAAC 59.125 45.455 0.00 0.00 0.00 3.01
8209 9063 3.137533 GTTTGCAGAGCTTCAGAGAACT 58.862 45.455 0.00 0.00 0.00 3.01
8210 9064 3.482156 TTGCAGAGCTTCAGAGAACTT 57.518 42.857 0.00 0.00 0.00 2.66
8211 9065 3.482156 TGCAGAGCTTCAGAGAACTTT 57.518 42.857 0.00 0.00 0.00 2.66
8212 9066 3.136763 TGCAGAGCTTCAGAGAACTTTG 58.863 45.455 0.00 0.00 0.00 2.77
8213 9067 3.137533 GCAGAGCTTCAGAGAACTTTGT 58.862 45.455 0.00 0.00 0.00 2.83
8214 9068 3.186205 GCAGAGCTTCAGAGAACTTTGTC 59.814 47.826 0.00 0.00 0.00 3.18
8215 9069 4.630111 CAGAGCTTCAGAGAACTTTGTCT 58.370 43.478 0.00 0.00 0.00 3.41
8216 9070 4.448395 CAGAGCTTCAGAGAACTTTGTCTG 59.552 45.833 9.35 9.35 46.55 3.51
8217 9071 4.100808 AGAGCTTCAGAGAACTTTGTCTGT 59.899 41.667 14.01 0.00 45.67 3.41
8218 9072 4.775236 AGCTTCAGAGAACTTTGTCTGTT 58.225 39.130 14.01 0.00 45.67 3.16
8219 9073 4.574013 AGCTTCAGAGAACTTTGTCTGTTG 59.426 41.667 14.01 9.92 45.67 3.33
8327 9181 2.264005 ATTACACCGGACAAACTGCA 57.736 45.000 9.46 0.00 0.00 4.41
8402 9256 7.744733 TGAGAAGCAATATATTGATGGTACCA 58.255 34.615 26.22 18.99 40.14 3.25
8449 9305 0.029300 CACACAGAGTGGCGTTTTGG 59.971 55.000 1.93 0.00 44.69 3.28
8480 9336 1.761206 GCGCGCTTCTGGTTTTAAAA 58.239 45.000 26.67 0.00 0.00 1.52
8541 9397 9.751542 TCCAAACAAAAATTTGACGTATACATT 57.248 25.926 12.54 0.00 41.28 2.71
8568 9424 9.476202 TTGATATTATACATCCTCACAAAGTCG 57.524 33.333 0.00 0.00 0.00 4.18
8569 9425 8.638873 TGATATTATACATCCTCACAAAGTCGT 58.361 33.333 0.00 0.00 0.00 4.34
8570 9426 9.477484 GATATTATACATCCTCACAAAGTCGTT 57.523 33.333 0.00 0.00 0.00 3.85
8574 9430 1.214367 TCCTCACAAAGTCGTTTCGC 58.786 50.000 0.00 0.00 0.00 4.70
8603 9459 2.487406 GACAAGTTATGTGTCGCGTG 57.513 50.000 5.77 0.00 44.12 5.34
8611 9467 2.383298 ATGTGTCGCGTGTGAAAAAG 57.617 45.000 5.77 0.00 0.00 2.27
8620 9476 4.035017 CGCGTGTGAAAAAGACAAAATCT 58.965 39.130 0.00 0.00 40.46 2.40
8621 9477 5.006844 TCGCGTGTGAAAAAGACAAAATCTA 59.993 36.000 5.77 0.00 36.27 1.98
8623 9479 6.343924 CGCGTGTGAAAAAGACAAAATCTAAC 60.344 38.462 0.00 0.00 36.27 2.34
8733 9589 8.519526 TGCACACATATAATGTCGAGATGTATA 58.480 33.333 0.00 2.05 42.70 1.47
8792 9651 1.698506 TTTTTCGGTGGCAGGATTGT 58.301 45.000 0.00 0.00 0.00 2.71
8793 9652 0.958091 TTTTCGGTGGCAGGATTGTG 59.042 50.000 0.00 0.00 0.00 3.33
8794 9653 0.179004 TTTCGGTGGCAGGATTGTGT 60.179 50.000 0.00 0.00 0.00 3.72
8813 9672 1.444895 GCTTCCATGTGCCAAAGCG 60.445 57.895 0.00 0.00 44.31 4.68
8815 9674 0.169672 CTTCCATGTGCCAAAGCGAG 59.830 55.000 0.00 0.00 44.31 5.03
8824 9684 3.316588 TGTGCCAAAGCGAGTTTTGATAA 59.683 39.130 12.82 0.00 44.31 1.75
8856 9716 5.766670 CCCTCCGTTCCTAAATATAAAACCC 59.233 44.000 0.00 0.00 0.00 4.11
8858 9718 6.261603 CCTCCGTTCCTAAATATAAAACCCAC 59.738 42.308 0.00 0.00 0.00 4.61
8859 9719 6.961042 TCCGTTCCTAAATATAAAACCCACT 58.039 36.000 0.00 0.00 0.00 4.00
8871 9731 2.357517 CCCACTGGTCACACGAGC 60.358 66.667 0.00 0.00 40.20 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.024271 CTATGGTCACCAATTGCCCG 58.976 55.000 0.00 0.00 36.95 6.13
61 68 0.394192 TGTGAGGACTGACTTGCTGG 59.606 55.000 0.00 0.00 0.00 4.85
73 81 6.597562 AGTTTAACCATTGTAACTGTGAGGA 58.402 36.000 0.00 0.00 30.17 3.71
98 106 8.592809 TGGTCTTTTGCCTTGATTATTGTTATT 58.407 29.630 0.00 0.00 0.00 1.40
99 107 8.133024 TGGTCTTTTGCCTTGATTATTGTTAT 57.867 30.769 0.00 0.00 0.00 1.89
105 113 4.837860 TGGTTGGTCTTTTGCCTTGATTAT 59.162 37.500 0.00 0.00 0.00 1.28
113 121 2.547855 GGATTGTGGTTGGTCTTTTGCC 60.548 50.000 0.00 0.00 0.00 4.52
122 130 2.162681 GAGAGGTTGGATTGTGGTTGG 58.837 52.381 0.00 0.00 0.00 3.77
125 137 3.935993 CGAGAGGTTGGATTGTGGT 57.064 52.632 0.00 0.00 0.00 4.16
201 214 4.549458 GTGCTGATTGTATTTGTTGCACT 58.451 39.130 0.00 0.00 43.95 4.40
223 237 0.310854 GAGAGGGTTTGTGTTTGCGG 59.689 55.000 0.00 0.00 0.00 5.69
247 261 0.246635 TTGCGTCAGGAGGAAGTAGC 59.753 55.000 0.00 0.00 0.00 3.58
255 269 2.742372 CCGGGTTTGCGTCAGGAG 60.742 66.667 0.00 0.00 0.00 3.69
304 319 0.861866 CTGCTCGACGTGTACGATGG 60.862 60.000 11.79 0.13 43.02 3.51
366 381 3.119280 GCTTGTCTCTCAACCTAGAGGAC 60.119 52.174 1.60 0.00 42.78 3.85
388 404 4.702131 CCATTAAACTGAGAGGTTTCTGGG 59.298 45.833 0.00 0.00 39.66 4.45
452 470 4.463788 CCAATCCAGCCCCCACCC 62.464 72.222 0.00 0.00 0.00 4.61
453 471 2.313427 TACCAATCCAGCCCCCACC 61.313 63.158 0.00 0.00 0.00 4.61
454 472 1.076995 GTACCAATCCAGCCCCCAC 60.077 63.158 0.00 0.00 0.00 4.61
455 473 2.313427 GGTACCAATCCAGCCCCCA 61.313 63.158 7.15 0.00 0.00 4.96
456 474 2.601299 GGTACCAATCCAGCCCCC 59.399 66.667 7.15 0.00 0.00 5.40
457 475 2.192175 CGGTACCAATCCAGCCCC 59.808 66.667 13.54 0.00 0.00 5.80
458 476 1.029947 CAACGGTACCAATCCAGCCC 61.030 60.000 13.54 0.00 0.00 5.19
459 477 0.035820 TCAACGGTACCAATCCAGCC 60.036 55.000 13.54 0.00 0.00 4.85
460 478 1.084289 GTCAACGGTACCAATCCAGC 58.916 55.000 13.54 0.00 0.00 4.85
461 479 1.355971 CGTCAACGGTACCAATCCAG 58.644 55.000 13.54 0.00 35.37 3.86
462 480 3.518381 CGTCAACGGTACCAATCCA 57.482 52.632 13.54 0.00 35.37 3.41
645 674 1.000771 GGAAGGGGAACTGGGAAGC 60.001 63.158 0.00 0.00 0.00 3.86
650 679 0.039764 GAAAGGGGAAGGGGAACTGG 59.960 60.000 0.00 0.00 0.00 4.00
651 680 0.039764 GGAAAGGGGAAGGGGAACTG 59.960 60.000 0.00 0.00 0.00 3.16
652 681 0.103337 AGGAAAGGGGAAGGGGAACT 60.103 55.000 0.00 0.00 0.00 3.01
653 682 0.784495 AAGGAAAGGGGAAGGGGAAC 59.216 55.000 0.00 0.00 0.00 3.62
750 785 2.187946 GAGACCATCAGGCCCGTG 59.812 66.667 0.00 0.00 39.06 4.94
804 844 3.484806 AAGCCCACCACCGTGTCA 61.485 61.111 0.00 0.00 38.41 3.58
805 845 2.978010 CAAGCCCACCACCGTGTC 60.978 66.667 0.00 0.00 38.41 3.67
806 846 4.579384 CCAAGCCCACCACCGTGT 62.579 66.667 0.00 0.00 38.41 4.49
978 1029 1.272480 GGATAGGTTGGTTGGTTGGCT 60.272 52.381 0.00 0.00 0.00 4.75
979 1030 1.182667 GGATAGGTTGGTTGGTTGGC 58.817 55.000 0.00 0.00 0.00 4.52
980 1031 1.003812 TCGGATAGGTTGGTTGGTTGG 59.996 52.381 0.00 0.00 0.00 3.77
981 1032 2.483014 TCGGATAGGTTGGTTGGTTG 57.517 50.000 0.00 0.00 0.00 3.77
982 1033 2.356741 CCATCGGATAGGTTGGTTGGTT 60.357 50.000 0.00 0.00 0.00 3.67
998 1049 2.897350 GCTTCTTCCCGGCCATCG 60.897 66.667 2.24 0.00 38.88 3.84
1451 1514 3.930012 CGCGATCCCCCTCTTCCC 61.930 72.222 0.00 0.00 0.00 3.97
1472 1538 2.735772 ATCATCTGCGAAGGGCCGT 61.736 57.895 0.00 0.00 42.61 5.68
1474 1540 1.895707 CCATCATCTGCGAAGGGCC 60.896 63.158 0.00 0.00 42.61 5.80
1475 1541 0.883814 CTCCATCATCTGCGAAGGGC 60.884 60.000 0.00 0.00 43.96 5.19
1476 1542 0.250209 CCTCCATCATCTGCGAAGGG 60.250 60.000 0.00 0.00 0.00 3.95
1477 1543 0.883814 GCCTCCATCATCTGCGAAGG 60.884 60.000 0.00 0.00 0.00 3.46
1479 1545 1.146930 GGCCTCCATCATCTGCGAA 59.853 57.895 0.00 0.00 0.00 4.70
1480 1546 2.824546 GGCCTCCATCATCTGCGA 59.175 61.111 0.00 0.00 0.00 5.10
1481 1547 2.664185 CGGCCTCCATCATCTGCG 60.664 66.667 0.00 0.00 0.00 5.18
1482 1548 1.301558 CTCGGCCTCCATCATCTGC 60.302 63.158 0.00 0.00 0.00 4.26
1483 1549 0.755079 TTCTCGGCCTCCATCATCTG 59.245 55.000 0.00 0.00 0.00 2.90
1484 1550 1.047002 CTTCTCGGCCTCCATCATCT 58.953 55.000 0.00 0.00 0.00 2.90
1485 1551 0.034616 CCTTCTCGGCCTCCATCATC 59.965 60.000 0.00 0.00 0.00 2.92
1486 1552 0.399091 TCCTTCTCGGCCTCCATCAT 60.399 55.000 0.00 0.00 0.00 2.45
1487 1553 1.001631 TCCTTCTCGGCCTCCATCA 59.998 57.895 0.00 0.00 0.00 3.07
1509 1575 2.808958 CGCGCAGTTATCCAACCCG 61.809 63.158 8.75 0.00 35.05 5.28
1513 1579 2.822255 GGGCGCGCAGTTATCCAA 60.822 61.111 34.42 0.00 0.00 3.53
1653 1719 4.216257 AGCAATTAATTGAAGTGTGTCGCT 59.784 37.500 28.33 13.07 40.14 4.93
1839 1906 8.697846 ACAAAAGAAATGTGCATCTAATCATG 57.302 30.769 0.00 0.00 0.00 3.07
1861 1928 1.070134 GCTGACAGTACAGTGGGACAA 59.930 52.381 3.99 0.00 44.16 3.18
1940 2007 2.749076 TGCAAGTGATCCGAATCCAAAG 59.251 45.455 0.00 0.00 0.00 2.77
1949 2016 1.081892 CAGACCTTGCAAGTGATCCG 58.918 55.000 24.35 10.77 0.00 4.18
2123 2190 8.657729 CATGATACAAAAATTGTTAAGCATGCA 58.342 29.630 21.98 0.00 42.22 3.96
2212 2386 1.403679 TGCTGTTTCACCTTTCAACGG 59.596 47.619 0.00 0.00 0.00 4.44
2328 2502 7.763172 TTATTTTGCGACATTTGTTGAGTTT 57.237 28.000 2.03 0.00 0.00 2.66
2356 2530 2.021457 GCACCACAGTAACACCAGTTT 58.979 47.619 0.00 0.00 39.15 2.66
2397 2571 6.542735 CAGATTGAAAGATCAGATGGTGATGT 59.457 38.462 0.00 0.00 46.64 3.06
2588 2764 4.508662 AGTTACTTGACTGCTTAGCATCC 58.491 43.478 7.58 3.13 38.13 3.51
2648 2824 7.450124 TCTAAAAACACACAAACAACTGGTA 57.550 32.000 0.00 0.00 0.00 3.25
2711 2887 1.911057 AACAAGCAAGGGAGGTAAGC 58.089 50.000 0.00 0.00 0.00 3.09
2814 2994 7.258022 GTTTCAAACCAAATAAACTGCCAAT 57.742 32.000 0.00 0.00 0.00 3.16
2936 3119 2.153366 AATGACCAAAGGCAAAAGCG 57.847 45.000 0.00 0.00 0.00 4.68
2952 3135 5.053145 AGCTCGTCAGAAGGCTTAATAATG 58.947 41.667 0.00 0.00 0.00 1.90
2982 3165 2.139563 TAGATTGGGTGGGGGTGGGA 62.140 60.000 0.00 0.00 0.00 4.37
3051 3234 8.306038 TGTCTTTGCATGCTTATCTACAAAAAT 58.694 29.630 20.33 0.00 0.00 1.82
3097 3280 4.649218 GGTTCATAATGGTGGCCTATTTGT 59.351 41.667 3.32 0.00 0.00 2.83
3098 3281 4.039124 GGGTTCATAATGGTGGCCTATTTG 59.961 45.833 3.32 4.54 0.00 2.32
3102 3288 2.174639 CTGGGTTCATAATGGTGGCCTA 59.825 50.000 3.32 0.00 0.00 3.93
3106 3292 1.750778 GTGCTGGGTTCATAATGGTGG 59.249 52.381 0.00 0.00 0.00 4.61
3180 3373 5.937165 CACAAATGGAAATAGAATGTGCG 57.063 39.130 0.00 0.00 31.53 5.34
3441 3634 6.712547 CCCAAATATCTCCCTCTGAACATTAC 59.287 42.308 0.00 0.00 0.00 1.89
4133 4326 5.814705 AGCTATACTTCTGCAAGTTGATGAC 59.185 40.000 7.16 0.00 40.16 3.06
4432 4625 6.455780 GCGAACTTCCTTTAGATGTAAGCTTC 60.456 42.308 0.00 0.00 34.84 3.86
4610 4803 4.747108 GCGAAGTGATGTTGATATAGCTGT 59.253 41.667 0.00 0.00 0.00 4.40
4633 4826 7.042321 AACTGAAGTTGTTCAATGCATTCATTG 60.042 33.333 9.53 11.35 46.17 2.82
4997 5822 2.449189 CAACATTTCACACACACACCG 58.551 47.619 0.00 0.00 0.00 4.94
5014 5839 7.593875 TTGCATTTGTTTAATCCATAGCAAC 57.406 32.000 0.00 0.00 33.87 4.17
5081 5909 3.150458 ACAGTGGTAAAAAGGTAGCCC 57.850 47.619 0.00 0.00 0.00 5.19
5133 5961 6.182627 TGTCAGAAAGTATTCATGCAATCCT 58.817 36.000 0.00 0.00 38.06 3.24
5134 5962 6.441093 TGTCAGAAAGTATTCATGCAATCC 57.559 37.500 0.00 0.00 38.06 3.01
5135 5963 7.972277 ACATTGTCAGAAAGTATTCATGCAATC 59.028 33.333 0.00 0.00 38.06 2.67
5136 5964 7.758076 CACATTGTCAGAAAGTATTCATGCAAT 59.242 33.333 0.00 0.00 38.06 3.56
5137 5965 7.040548 TCACATTGTCAGAAAGTATTCATGCAA 60.041 33.333 0.00 0.00 38.06 4.08
5138 5966 6.430616 TCACATTGTCAGAAAGTATTCATGCA 59.569 34.615 0.00 0.00 38.06 3.96
5139 5967 6.845302 TCACATTGTCAGAAAGTATTCATGC 58.155 36.000 0.00 0.00 38.06 4.06
5141 5969 9.896645 ACTATCACATTGTCAGAAAGTATTCAT 57.103 29.630 0.00 0.00 38.06 2.57
5147 5975 8.535335 ACATCTACTATCACATTGTCAGAAAGT 58.465 33.333 0.00 0.00 0.00 2.66
5148 5976 8.815189 CACATCTACTATCACATTGTCAGAAAG 58.185 37.037 0.00 0.00 0.00 2.62
5149 5977 7.765819 CCACATCTACTATCACATTGTCAGAAA 59.234 37.037 0.00 0.00 0.00 2.52
5150 5978 7.124147 TCCACATCTACTATCACATTGTCAGAA 59.876 37.037 0.00 0.00 0.00 3.02
5151 5979 6.607198 TCCACATCTACTATCACATTGTCAGA 59.393 38.462 0.00 0.00 0.00 3.27
5152 5980 6.809869 TCCACATCTACTATCACATTGTCAG 58.190 40.000 0.00 0.00 0.00 3.51
5153 5981 6.183360 CCTCCACATCTACTATCACATTGTCA 60.183 42.308 0.00 0.00 0.00 3.58
5154 5982 6.219473 CCTCCACATCTACTATCACATTGTC 58.781 44.000 0.00 0.00 0.00 3.18
5155 5983 5.070981 CCCTCCACATCTACTATCACATTGT 59.929 44.000 0.00 0.00 0.00 2.71
5156 5984 5.545588 CCCTCCACATCTACTATCACATTG 58.454 45.833 0.00 0.00 0.00 2.82
5157 5985 4.040952 GCCCTCCACATCTACTATCACATT 59.959 45.833 0.00 0.00 0.00 2.71
5158 5986 3.580458 GCCCTCCACATCTACTATCACAT 59.420 47.826 0.00 0.00 0.00 3.21
5159 5987 2.965831 GCCCTCCACATCTACTATCACA 59.034 50.000 0.00 0.00 0.00 3.58
5160 5988 2.965831 TGCCCTCCACATCTACTATCAC 59.034 50.000 0.00 0.00 0.00 3.06
5161 5989 3.328535 TGCCCTCCACATCTACTATCA 57.671 47.619 0.00 0.00 0.00 2.15
5162 5990 5.717178 TCTTATGCCCTCCACATCTACTATC 59.283 44.000 0.00 0.00 0.00 2.08
5163 5991 5.655394 TCTTATGCCCTCCACATCTACTAT 58.345 41.667 0.00 0.00 0.00 2.12
5164 5992 5.074746 TCTTATGCCCTCCACATCTACTA 57.925 43.478 0.00 0.00 0.00 1.82
5165 5993 3.900601 CTCTTATGCCCTCCACATCTACT 59.099 47.826 0.00 0.00 0.00 2.57
5166 5994 3.898123 TCTCTTATGCCCTCCACATCTAC 59.102 47.826 0.00 0.00 0.00 2.59
5167 5995 4.155709 CTCTCTTATGCCCTCCACATCTA 58.844 47.826 0.00 0.00 0.00 1.98
5168 5996 2.971330 CTCTCTTATGCCCTCCACATCT 59.029 50.000 0.00 0.00 0.00 2.90
5169 5997 2.038295 CCTCTCTTATGCCCTCCACATC 59.962 54.545 0.00 0.00 0.00 3.06
5170 5998 2.053244 CCTCTCTTATGCCCTCCACAT 58.947 52.381 0.00 0.00 0.00 3.21
5171 5999 1.500474 CCTCTCTTATGCCCTCCACA 58.500 55.000 0.00 0.00 0.00 4.17
5172 6000 0.761802 CCCTCTCTTATGCCCTCCAC 59.238 60.000 0.00 0.00 0.00 4.02
5173 6001 1.056700 GCCCTCTCTTATGCCCTCCA 61.057 60.000 0.00 0.00 0.00 3.86
5174 6002 0.766288 AGCCCTCTCTTATGCCCTCC 60.766 60.000 0.00 0.00 0.00 4.30
5175 6003 1.621317 GTAGCCCTCTCTTATGCCCTC 59.379 57.143 0.00 0.00 0.00 4.30
5176 6004 1.723288 GTAGCCCTCTCTTATGCCCT 58.277 55.000 0.00 0.00 0.00 5.19
5177 6005 0.687920 GGTAGCCCTCTCTTATGCCC 59.312 60.000 0.00 0.00 0.00 5.36
5178 6006 1.723288 AGGTAGCCCTCTCTTATGCC 58.277 55.000 0.00 0.00 35.62 4.40
5179 6007 3.847671 AAAGGTAGCCCTCTCTTATGC 57.152 47.619 0.00 0.00 41.56 3.14
5180 6008 6.056236 GGTAAAAAGGTAGCCCTCTCTTATG 58.944 44.000 0.00 0.00 41.56 1.90
5181 6009 5.729718 TGGTAAAAAGGTAGCCCTCTCTTAT 59.270 40.000 0.00 0.00 41.56 1.73
5182 6010 5.046087 GTGGTAAAAAGGTAGCCCTCTCTTA 60.046 44.000 0.00 0.00 41.56 2.10
5183 6011 3.914435 TGGTAAAAAGGTAGCCCTCTCTT 59.086 43.478 0.00 0.00 41.56 2.85
5184 6012 3.263681 GTGGTAAAAAGGTAGCCCTCTCT 59.736 47.826 0.00 0.00 41.56 3.10
5185 6013 3.263681 AGTGGTAAAAAGGTAGCCCTCTC 59.736 47.826 0.00 0.00 41.56 3.20
5186 6014 3.009143 CAGTGGTAAAAAGGTAGCCCTCT 59.991 47.826 0.00 0.00 41.56 3.69
5187 6015 3.244805 ACAGTGGTAAAAAGGTAGCCCTC 60.245 47.826 0.00 0.00 41.56 4.30
5188 6016 2.714793 ACAGTGGTAAAAAGGTAGCCCT 59.285 45.455 0.00 0.00 45.63 5.19
5189 6017 3.150458 ACAGTGGTAAAAAGGTAGCCC 57.850 47.619 0.00 0.00 0.00 5.19
5190 6018 3.688185 GCTACAGTGGTAAAAAGGTAGCC 59.312 47.826 9.75 0.00 44.75 3.93
5191 6019 4.941325 GCTACAGTGGTAAAAAGGTAGC 57.059 45.455 0.00 0.00 44.44 3.58
5192 6020 4.392138 GCAGCTACAGTGGTAAAAAGGTAG 59.608 45.833 0.00 0.00 33.23 3.18
5193 6021 4.041198 AGCAGCTACAGTGGTAAAAAGGTA 59.959 41.667 0.00 0.00 0.00 3.08
5194 6022 3.146847 GCAGCTACAGTGGTAAAAAGGT 58.853 45.455 0.00 0.00 0.00 3.50
5195 6023 3.412386 AGCAGCTACAGTGGTAAAAAGG 58.588 45.455 0.00 0.00 0.00 3.11
5196 6024 4.319177 AGAGCAGCTACAGTGGTAAAAAG 58.681 43.478 0.00 0.00 0.00 2.27
5197 6025 4.351874 AGAGCAGCTACAGTGGTAAAAA 57.648 40.909 0.00 0.00 0.00 1.94
5198 6026 4.351874 AAGAGCAGCTACAGTGGTAAAA 57.648 40.909 0.00 0.00 0.00 1.52
5199 6027 5.046591 ACATAAGAGCAGCTACAGTGGTAAA 60.047 40.000 0.00 0.00 0.00 2.01
5200 6028 4.466370 ACATAAGAGCAGCTACAGTGGTAA 59.534 41.667 0.00 0.00 0.00 2.85
5201 6029 4.023980 ACATAAGAGCAGCTACAGTGGTA 58.976 43.478 0.00 0.00 0.00 3.25
5202 6030 2.834549 ACATAAGAGCAGCTACAGTGGT 59.165 45.455 0.00 0.00 0.00 4.16
5203 6031 3.452474 GACATAAGAGCAGCTACAGTGG 58.548 50.000 0.00 0.00 0.00 4.00
5204 6032 3.111838 CGACATAAGAGCAGCTACAGTG 58.888 50.000 0.00 0.00 0.00 3.66
5205 6033 3.017442 TCGACATAAGAGCAGCTACAGT 58.983 45.455 0.00 0.00 0.00 3.55
5206 6034 3.699779 TCGACATAAGAGCAGCTACAG 57.300 47.619 0.00 0.00 0.00 2.74
5207 6035 3.444034 AGTTCGACATAAGAGCAGCTACA 59.556 43.478 0.00 0.00 0.00 2.74
5208 6036 4.035278 AGTTCGACATAAGAGCAGCTAC 57.965 45.455 0.00 0.00 0.00 3.58
5209 6037 4.082190 ACAAGTTCGACATAAGAGCAGCTA 60.082 41.667 0.00 0.00 0.00 3.32
5210 6038 3.257393 CAAGTTCGACATAAGAGCAGCT 58.743 45.455 0.00 0.00 0.00 4.24
5211 6039 2.996621 ACAAGTTCGACATAAGAGCAGC 59.003 45.455 0.00 0.00 0.00 5.25
5212 6040 3.181526 GCACAAGTTCGACATAAGAGCAG 60.182 47.826 0.00 0.00 0.00 4.24
5213 6041 2.736721 GCACAAGTTCGACATAAGAGCA 59.263 45.455 0.00 0.00 0.00 4.26
5214 6042 2.094417 GGCACAAGTTCGACATAAGAGC 59.906 50.000 0.00 0.00 0.00 4.09
5215 6043 3.325870 TGGCACAAGTTCGACATAAGAG 58.674 45.455 0.00 0.00 31.92 2.85
5216 6044 3.394674 TGGCACAAGTTCGACATAAGA 57.605 42.857 0.00 0.00 31.92 2.10
5231 6059 3.216800 TCATGCAATCCTCTAATGGCAC 58.783 45.455 0.00 0.00 38.39 5.01
5232 6060 3.581265 TCATGCAATCCTCTAATGGCA 57.419 42.857 0.00 0.00 39.84 4.92
5233 6061 5.709164 AGTATTCATGCAATCCTCTAATGGC 59.291 40.000 0.00 0.00 0.00 4.40
5234 6062 7.756395 AAGTATTCATGCAATCCTCTAATGG 57.244 36.000 0.00 0.00 0.00 3.16
5235 6063 9.064706 AGAAAGTATTCATGCAATCCTCTAATG 57.935 33.333 0.00 0.00 38.06 1.90
5236 6064 9.064706 CAGAAAGTATTCATGCAATCCTCTAAT 57.935 33.333 0.00 0.00 38.06 1.73
5237 6065 8.267183 TCAGAAAGTATTCATGCAATCCTCTAA 58.733 33.333 0.00 0.00 38.06 2.10
5238 6066 7.712639 GTCAGAAAGTATTCATGCAATCCTCTA 59.287 37.037 0.00 0.00 38.06 2.43
5239 6067 6.541641 GTCAGAAAGTATTCATGCAATCCTCT 59.458 38.462 0.00 0.00 38.06 3.69
5240 6068 6.317140 TGTCAGAAAGTATTCATGCAATCCTC 59.683 38.462 0.00 0.00 38.06 3.71
5243 6071 7.972277 ACATTGTCAGAAAGTATTCATGCAATC 59.028 33.333 0.00 0.00 38.06 2.67
5309 6137 9.573133 CAAACATAGAAGGATATCCAAAACAAC 57.427 33.333 23.81 6.61 38.89 3.32
5331 6159 4.937620 TCCATGACTCTCACATAAGCAAAC 59.062 41.667 0.00 0.00 0.00 2.93
5338 6166 9.166173 CTACAAAAATTCCATGACTCTCACATA 57.834 33.333 0.00 0.00 0.00 2.29
5414 6246 6.016777 CAGATAAAGACCCAACAAGGATATGC 60.017 42.308 0.00 0.00 41.22 3.14
5621 6453 2.095059 GGAATTGTCGCACTGAGCAATT 60.095 45.455 11.83 11.83 46.13 2.32
5699 6531 2.050144 GACCCATCCTCATTAGGCTCA 58.950 52.381 0.00 0.00 43.31 4.26
5822 6654 9.437045 GATTTTTCAAAATTGTAAAAGTGCCAG 57.563 29.630 13.54 0.00 39.58 4.85
5875 6707 8.188799 CACAAATGATTAAGATGAATGCACTCT 58.811 33.333 0.00 0.00 0.00 3.24
6017 6849 7.125811 AGAGGTAGTATATGCCAAGAGTTTCAA 59.874 37.037 0.00 0.00 35.79 2.69
6023 6868 6.490381 TGTACAGAGGTAGTATATGCCAAGAG 59.510 42.308 0.00 0.00 35.79 2.85
6222 7067 0.914551 CGCTATCTGTTTGACGACGG 59.085 55.000 0.00 0.00 0.00 4.79
6249 7094 1.618343 TCAACACGAGCCTCATCTTCA 59.382 47.619 0.00 0.00 0.00 3.02
6325 7170 5.010719 CCATTTCCTCATCCATTTCATCTGG 59.989 44.000 0.00 0.00 34.93 3.86
6432 7277 1.168714 CACCTTTGGTAGCTTCTGCC 58.831 55.000 0.00 0.00 34.62 4.85
6561 7406 2.938451 TCGCATAAGTTGAGATTGCTGG 59.062 45.455 0.00 0.00 0.00 4.85
6704 7549 6.417191 TTCATTTTGCTAACGGAGTGATAC 57.583 37.500 0.00 0.00 45.00 2.24
6705 7550 6.821160 TCATTCATTTTGCTAACGGAGTGATA 59.179 34.615 0.00 0.00 45.00 2.15
6706 7551 5.647658 TCATTCATTTTGCTAACGGAGTGAT 59.352 36.000 0.00 0.00 45.00 3.06
6707 7552 5.000591 TCATTCATTTTGCTAACGGAGTGA 58.999 37.500 0.00 3.43 45.00 3.41
6708 7553 5.295431 TCATTCATTTTGCTAACGGAGTG 57.705 39.130 0.00 0.00 45.00 3.51
6710 7555 7.429340 GTGTATTCATTCATTTTGCTAACGGAG 59.571 37.037 0.00 0.00 0.00 4.63
6711 7556 7.094592 TGTGTATTCATTCATTTTGCTAACGGA 60.095 33.333 0.00 0.00 0.00 4.69
6712 7557 7.026562 TGTGTATTCATTCATTTTGCTAACGG 58.973 34.615 0.00 0.00 0.00 4.44
6713 7558 8.619146 ATGTGTATTCATTCATTTTGCTAACG 57.381 30.769 0.00 0.00 0.00 3.18
6714 7559 9.793252 AGATGTGTATTCATTCATTTTGCTAAC 57.207 29.630 0.00 0.00 0.00 2.34
6715 7560 9.791820 CAGATGTGTATTCATTCATTTTGCTAA 57.208 29.630 0.00 0.00 0.00 3.09
6716 7561 8.959548 ACAGATGTGTATTCATTCATTTTGCTA 58.040 29.630 0.00 0.00 34.05 3.49
6717 7562 7.833786 ACAGATGTGTATTCATTCATTTTGCT 58.166 30.769 0.00 0.00 34.05 3.91
6718 7563 9.740239 ATACAGATGTGTATTCATTCATTTTGC 57.260 29.630 9.62 0.00 45.99 3.68
6727 7572 9.890629 ACAAACTACATACAGATGTGTATTCAT 57.109 29.630 12.58 4.92 45.99 2.57
6732 7577 9.594478 CCATTACAAACTACATACAGATGTGTA 57.406 33.333 5.03 5.03 46.11 2.90
6733 7578 8.318412 TCCATTACAAACTACATACAGATGTGT 58.682 33.333 0.00 0.00 46.11 3.72
6734 7579 8.716646 TCCATTACAAACTACATACAGATGTG 57.283 34.615 0.82 0.00 46.11 3.21
6738 7583 9.817809 GAGATTCCATTACAAACTACATACAGA 57.182 33.333 0.00 0.00 0.00 3.41
6739 7584 9.823647 AGAGATTCCATTACAAACTACATACAG 57.176 33.333 0.00 0.00 0.00 2.74
6767 7612 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
6768 7613 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
6769 7614 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
6770 7615 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
6771 7616 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
6772 7617 9.327731 CTACTCCCTCCATTCCTAAATATAAGT 57.672 37.037 0.00 0.00 0.00 2.24
6773 7618 9.548631 TCTACTCCCTCCATTCCTAAATATAAG 57.451 37.037 0.00 0.00 0.00 1.73
6775 7620 9.716556 GATCTACTCCCTCCATTCCTAAATATA 57.283 37.037 0.00 0.00 0.00 0.86
6776 7621 8.186985 TGATCTACTCCCTCCATTCCTAAATAT 58.813 37.037 0.00 0.00 0.00 1.28
6777 7622 7.544650 TGATCTACTCCCTCCATTCCTAAATA 58.455 38.462 0.00 0.00 0.00 1.40
6778 7623 6.393897 TGATCTACTCCCTCCATTCCTAAAT 58.606 40.000 0.00 0.00 0.00 1.40
6779 7624 5.788430 TGATCTACTCCCTCCATTCCTAAA 58.212 41.667 0.00 0.00 0.00 1.85
6780 7625 5.418692 TGATCTACTCCCTCCATTCCTAA 57.581 43.478 0.00 0.00 0.00 2.69
6781 7626 5.623551 ATGATCTACTCCCTCCATTCCTA 57.376 43.478 0.00 0.00 0.00 2.94
6782 7627 4.500389 ATGATCTACTCCCTCCATTCCT 57.500 45.455 0.00 0.00 0.00 3.36
6783 7628 5.782845 ACTAATGATCTACTCCCTCCATTCC 59.217 44.000 0.00 0.00 0.00 3.01
6784 7629 6.926630 ACTAATGATCTACTCCCTCCATTC 57.073 41.667 0.00 0.00 0.00 2.67
6785 7630 7.420680 CCAAACTAATGATCTACTCCCTCCATT 60.421 40.741 0.00 0.00 0.00 3.16
6786 7631 6.043706 CCAAACTAATGATCTACTCCCTCCAT 59.956 42.308 0.00 0.00 0.00 3.41
6787 7632 5.366768 CCAAACTAATGATCTACTCCCTCCA 59.633 44.000 0.00 0.00 0.00 3.86
6788 7633 5.221742 CCCAAACTAATGATCTACTCCCTCC 60.222 48.000 0.00 0.00 0.00 4.30
6789 7634 5.367060 ACCCAAACTAATGATCTACTCCCTC 59.633 44.000 0.00 0.00 0.00 4.30
6790 7635 5.289510 ACCCAAACTAATGATCTACTCCCT 58.710 41.667 0.00 0.00 0.00 4.20
6791 7636 5.632034 ACCCAAACTAATGATCTACTCCC 57.368 43.478 0.00 0.00 0.00 4.30
6792 7637 6.183360 GCAAACCCAAACTAATGATCTACTCC 60.183 42.308 0.00 0.00 0.00 3.85
6793 7638 6.183360 GGCAAACCCAAACTAATGATCTACTC 60.183 42.308 0.00 0.00 0.00 2.59
6794 7639 5.652452 GGCAAACCCAAACTAATGATCTACT 59.348 40.000 0.00 0.00 0.00 2.57
6861 7708 7.878127 ACTAGAAAGTGCAAGCTACAGAAAATA 59.122 33.333 0.00 0.00 33.57 1.40
6980 7828 5.906073 AGAAGAAAACAAACACCTCCAATG 58.094 37.500 0.00 0.00 0.00 2.82
6983 7831 4.855340 AGAGAAGAAAACAAACACCTCCA 58.145 39.130 0.00 0.00 0.00 3.86
6984 7832 5.836821 AAGAGAAGAAAACAAACACCTCC 57.163 39.130 0.00 0.00 0.00 4.30
7080 7928 2.978978 TGGGAGACAGATGGTTCAAGAA 59.021 45.455 0.00 0.00 0.00 2.52
7082 7930 3.077359 GTTGGGAGACAGATGGTTCAAG 58.923 50.000 0.00 0.00 0.00 3.02
7084 7932 2.338809 AGTTGGGAGACAGATGGTTCA 58.661 47.619 0.00 0.00 0.00 3.18
7085 7933 3.425162 AAGTTGGGAGACAGATGGTTC 57.575 47.619 0.00 0.00 0.00 3.62
7333 8184 2.985847 GGGCCGCAGAAGCAACTT 60.986 61.111 0.00 0.00 42.27 2.66
7586 8437 2.689983 CACCAGCTCCAAAGTTTGAACT 59.310 45.455 17.33 8.00 42.04 3.01
7640 8491 0.737367 CCTTTGATGCGCTCGAGACA 60.737 55.000 18.75 13.99 0.00 3.41
7824 8675 2.291043 ACAGGGTGTAGGCTTCCGG 61.291 63.158 0.00 0.00 0.00 5.14
7832 8683 1.442769 GTGCATCACACAGGGTGTAG 58.557 55.000 1.78 0.00 45.65 2.74
7918 8769 2.364970 CCCAAAGTCATTTCTGGTGCAA 59.635 45.455 0.00 0.00 0.00 4.08
7919 8770 1.962807 CCCAAAGTCATTTCTGGTGCA 59.037 47.619 0.00 0.00 0.00 4.57
8032 8883 3.441572 ACTGTTCAATATTGCTGACAGCC 59.558 43.478 27.74 7.41 41.51 4.85
8067 8918 1.535462 GCAGGCGTTCATACAACTGTT 59.465 47.619 0.00 0.00 32.95 3.16
8088 8939 6.089551 CGGTAAATCTAATCTCCGCAACATAG 59.910 42.308 0.00 0.00 0.00 2.23
8097 8948 4.381411 AGCAAGCGGTAAATCTAATCTCC 58.619 43.478 0.00 0.00 0.00 3.71
8165 9016 0.954452 CCAAGCTCACCAGTTTGTCC 59.046 55.000 0.00 0.00 38.78 4.02
8189 9043 3.482156 AGTTCTCTGAAGCTCTGCAAA 57.518 42.857 0.00 0.00 0.00 3.68
8196 9050 4.414337 ACAGACAAAGTTCTCTGAAGCT 57.586 40.909 14.56 0.00 37.85 3.74
8207 9061 3.489355 TGGATGCATCAACAGACAAAGT 58.511 40.909 27.25 0.00 0.00 2.66
8208 9062 4.482386 CTTGGATGCATCAACAGACAAAG 58.518 43.478 27.25 12.67 0.00 2.77
8209 9063 3.305539 GCTTGGATGCATCAACAGACAAA 60.306 43.478 27.25 7.78 0.00 2.83
8210 9064 2.229543 GCTTGGATGCATCAACAGACAA 59.770 45.455 27.25 18.46 0.00 3.18
8211 9065 1.814394 GCTTGGATGCATCAACAGACA 59.186 47.619 27.25 12.47 0.00 3.41
8212 9066 1.133790 GGCTTGGATGCATCAACAGAC 59.866 52.381 27.25 17.33 34.04 3.51
8213 9067 1.466856 GGCTTGGATGCATCAACAGA 58.533 50.000 27.25 1.20 34.04 3.41
8214 9068 0.099968 CGGCTTGGATGCATCAACAG 59.900 55.000 27.25 19.01 34.04 3.16
8215 9069 1.936436 GCGGCTTGGATGCATCAACA 61.936 55.000 27.25 14.63 34.04 3.33
8216 9070 1.226773 GCGGCTTGGATGCATCAAC 60.227 57.895 27.25 12.13 34.04 3.18
8217 9071 1.249469 TTGCGGCTTGGATGCATCAA 61.249 50.000 27.25 15.01 38.60 2.57
8218 9072 1.038681 ATTGCGGCTTGGATGCATCA 61.039 50.000 27.25 11.43 38.60 3.07
8219 9073 0.596600 CATTGCGGCTTGGATGCATC 60.597 55.000 18.81 18.81 38.60 3.91
8256 9110 3.368427 CCATAAACGCAGGAGAGAACAGA 60.368 47.826 0.00 0.00 0.00 3.41
8327 9181 4.689612 TTTTCTAGGCCTTGATCGCTAT 57.310 40.909 17.91 0.00 0.00 2.97
8418 9272 5.182001 GCCACTCTGTGTGTTATCATCTTTT 59.818 40.000 8.81 0.00 44.81 2.27
8424 9278 1.343142 ACGCCACTCTGTGTGTTATCA 59.657 47.619 8.81 0.00 44.81 2.15
8433 9287 1.453015 TGCCAAAACGCCACTCTGT 60.453 52.632 0.00 0.00 0.00 3.41
8460 9316 0.384974 TTTAAAACCAGAAGCGCGCG 60.385 50.000 28.44 28.44 0.00 6.86
8543 9399 8.638873 ACGACTTTGTGAGGATGTATAATATCA 58.361 33.333 0.00 0.00 0.00 2.15
8556 9412 3.729004 GCGAAACGACTTTGTGAGG 57.271 52.632 0.00 0.00 0.00 3.86
8598 9454 4.035017 AGATTTTGTCTTTTTCACACGCG 58.965 39.130 3.53 3.53 31.47 6.01
8600 9456 6.685403 ACGTTAGATTTTGTCTTTTTCACACG 59.315 34.615 0.00 0.00 38.42 4.49
8700 9556 8.202745 TCGACATTATATGTGTGCATGTTAAA 57.797 30.769 0.00 0.00 45.03 1.52
8703 9559 6.048509 TCTCGACATTATATGTGTGCATGTT 58.951 36.000 0.00 0.00 45.03 2.71
8706 9562 6.226052 ACATCTCGACATTATATGTGTGCAT 58.774 36.000 0.00 0.00 45.03 3.96
8777 9636 1.302431 CACACAATCCTGCCACCGA 60.302 57.895 0.00 0.00 0.00 4.69
8783 9642 1.135199 CATGGAAGCACACAATCCTGC 60.135 52.381 0.00 0.00 34.24 4.85
8789 9648 0.754587 TGGCACATGGAAGCACACAA 60.755 50.000 0.00 0.00 0.00 3.33
8790 9649 0.754587 TTGGCACATGGAAGCACACA 60.755 50.000 0.00 0.00 39.30 3.72
8791 9650 0.388659 TTTGGCACATGGAAGCACAC 59.611 50.000 0.00 0.00 39.30 3.82
8792 9651 0.675083 CTTTGGCACATGGAAGCACA 59.325 50.000 0.00 0.00 39.30 4.57
8793 9652 0.668401 GCTTTGGCACATGGAAGCAC 60.668 55.000 14.29 0.00 45.73 4.40
8794 9653 1.667151 GCTTTGGCACATGGAAGCA 59.333 52.632 14.29 0.00 45.73 3.91
8813 9672 4.142038 AGGGGTGTGTGTTATCAAAACTC 58.858 43.478 0.00 0.00 0.00 3.01
8815 9674 3.254903 GGAGGGGTGTGTGTTATCAAAAC 59.745 47.826 0.00 0.00 0.00 2.43
8824 9684 2.814835 GGAACGGAGGGGTGTGTGT 61.815 63.158 0.00 0.00 0.00 3.72
8856 9716 0.665670 CTGAGCTCGTGTGACCAGTG 60.666 60.000 9.64 0.00 0.00 3.66
8858 9718 0.529833 ATCTGAGCTCGTGTGACCAG 59.470 55.000 9.64 0.00 0.00 4.00
8859 9719 0.244721 CATCTGAGCTCGTGTGACCA 59.755 55.000 9.64 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.