Multiple sequence alignment - TraesCS6D01G089500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G089500 chr6D 100.000 3682 0 0 1 3682 55402737 55406418 0.000000e+00 6800
1 TraesCS6D01G089500 chr6D 88.218 2020 208 18 1024 3031 55629044 55631045 0.000000e+00 2385
2 TraesCS6D01G089500 chr6D 83.308 1941 239 45 639 2520 55104444 55106358 0.000000e+00 1711
3 TraesCS6D01G089500 chr6D 83.728 1733 218 42 639 2326 55311815 55313528 0.000000e+00 1580
4 TraesCS6D01G089500 chr6D 81.881 1457 248 15 1034 2480 48468838 48467388 0.000000e+00 1214
5 TraesCS6D01G089500 chr6D 91.304 667 44 3 2369 3031 55315180 55315836 0.000000e+00 898
6 TraesCS6D01G089500 chr6D 91.699 518 23 6 3102 3605 55631156 55631667 0.000000e+00 701
7 TraesCS6D01G089500 chr6D 87.689 528 46 11 2511 3031 55106511 55107026 6.810000e-167 597
8 TraesCS6D01G089500 chr6D 91.195 318 13 3 3102 3406 55315957 55316272 5.690000e-113 418
9 TraesCS6D01G089500 chr6D 87.108 287 20 6 3402 3679 55316224 55316502 3.570000e-80 309
10 TraesCS6D01G089500 chr6D 85.324 293 26 7 3128 3406 55107166 55107455 1.670000e-73 287
11 TraesCS6D01G089500 chr6D 84.701 268 21 9 639 887 55628649 55628915 2.200000e-62 250
12 TraesCS6D01G089500 chr6D 93.590 78 4 1 890 967 55628944 55629020 8.360000e-22 115
13 TraesCS6D01G089500 chr6B 91.904 2631 121 32 500 3079 125404392 125406981 0.000000e+00 3594
14 TraesCS6D01G089500 chr6B 82.410 2581 346 63 520 3030 125335672 125338214 0.000000e+00 2152
15 TraesCS6D01G089500 chr6B 86.388 1506 191 12 1024 2520 125379567 125381067 0.000000e+00 1633
16 TraesCS6D01G089500 chr6B 95.960 594 10 3 3102 3682 125407139 125407731 0.000000e+00 952
17 TraesCS6D01G089500 chr6B 93.130 393 17 4 3296 3679 125339208 125339599 5.340000e-158 568
18 TraesCS6D01G089500 chr6B 88.393 448 34 11 2590 3031 125381267 125381702 1.170000e-144 523
19 TraesCS6D01G089500 chr6B 78.810 538 76 9 2517 3023 124664097 124664627 9.860000e-86 327
20 TraesCS6D01G089500 chr6B 87.795 254 22 7 3404 3654 125382087 125382334 4.650000e-74 289
21 TraesCS6D01G089500 chr6B 83.962 318 29 12 3104 3406 125338338 125338648 6.020000e-73 285
22 TraesCS6D01G089500 chr6B 84.642 293 28 7 3128 3406 125381843 125382132 3.620000e-70 276
23 TraesCS6D01G089500 chr6B 80.508 236 38 5 4 233 125360661 125360894 1.360000e-39 174
24 TraesCS6D01G089500 chr6A 90.443 2030 175 8 994 3018 69132515 69134530 0.000000e+00 2656
25 TraesCS6D01G089500 chr6A 81.744 1468 249 17 1034 2489 67055486 67054026 0.000000e+00 1208
26 TraesCS6D01G089500 chr6A 94.305 597 13 5 3103 3679 69134666 69135261 0.000000e+00 894
27 TraesCS6D01G089500 chr6A 79.537 518 52 25 495 973 69132024 69132526 1.650000e-83 320
28 TraesCS6D01G089500 chr6A 81.780 236 35 4 4 233 69125318 69125551 1.350000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G089500 chr6D 55402737 55406418 3681 False 6800.000000 6800 100.000000 1 3682 1 chr6D.!!$F1 3681
1 TraesCS6D01G089500 chr6D 48467388 48468838 1450 True 1214.000000 1214 81.881000 1034 2480 1 chr6D.!!$R1 1446
2 TraesCS6D01G089500 chr6D 55104444 55107455 3011 False 865.000000 1711 85.440333 639 3406 3 chr6D.!!$F2 2767
3 TraesCS6D01G089500 chr6D 55628649 55631667 3018 False 862.750000 2385 89.552000 639 3605 4 chr6D.!!$F4 2966
4 TraesCS6D01G089500 chr6D 55311815 55316502 4687 False 801.250000 1580 88.333750 639 3679 4 chr6D.!!$F3 3040
5 TraesCS6D01G089500 chr6B 125404392 125407731 3339 False 2273.000000 3594 93.932000 500 3682 2 chr6B.!!$F5 3182
6 TraesCS6D01G089500 chr6B 125335672 125339599 3927 False 1001.666667 2152 86.500667 520 3679 3 chr6B.!!$F3 3159
7 TraesCS6D01G089500 chr6B 125379567 125382334 2767 False 680.250000 1633 86.804500 1024 3654 4 chr6B.!!$F4 2630
8 TraesCS6D01G089500 chr6B 124664097 124664627 530 False 327.000000 327 78.810000 2517 3023 1 chr6B.!!$F1 506
9 TraesCS6D01G089500 chr6A 69132024 69135261 3237 False 1290.000000 2656 88.095000 495 3679 3 chr6A.!!$F2 3184
10 TraesCS6D01G089500 chr6A 67054026 67055486 1460 True 1208.000000 1208 81.744000 1034 2489 1 chr6A.!!$R1 1455

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.029035 GCAGCGATTGATCAAGGCAG 59.971 55.0 26.62 21.92 0.00 4.85 F
229 230 0.036765 GCCCCACTCGTGTGTGATAA 60.037 55.0 15.79 0.00 42.34 1.75 F
334 335 0.107831 GCCCCGCTTGATGGTGTATA 59.892 55.0 0.00 0.00 0.00 1.47 F
786 842 0.179004 TCTCCGGCATTGTTGGTTGT 60.179 50.0 0.00 0.00 0.00 3.32 F
1743 1913 0.178975 TGAAATGAAACAGCGGGGGT 60.179 50.0 0.00 0.00 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 1267 0.179062 AGCCGACATGATCCTTGAGC 60.179 55.000 0.00 1.08 0.00 4.26 R
1442 1608 2.086869 TGAATAAGCTGCTGAAGGTGC 58.913 47.619 1.35 0.00 36.51 5.01 R
1743 1913 2.220586 TCCCCACATCAGGCACGAA 61.221 57.895 0.00 0.00 0.00 3.85 R
2541 4485 1.152819 CCCTGGATCATGCACCTGG 60.153 63.158 19.30 19.30 42.40 4.45 R
3253 5390 0.376152 CGTATAGACAGCACCGTCGT 59.624 55.000 0.00 0.00 40.98 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.838771 AAAACAGTCTATTATCGTGGGTTAC 57.161 36.000 0.00 0.00 0.00 2.50
25 26 5.526506 ACAGTCTATTATCGTGGGTTACC 57.473 43.478 0.00 0.00 37.24 2.85
26 27 4.957954 ACAGTCTATTATCGTGGGTTACCA 59.042 41.667 2.98 0.00 46.94 3.25
40 41 5.424757 TGGGTTACCACATTTTCTAGATCG 58.575 41.667 2.98 0.00 43.37 3.69
41 42 5.046159 TGGGTTACCACATTTTCTAGATCGT 60.046 40.000 2.98 0.00 43.37 3.73
42 43 5.522824 GGGTTACCACATTTTCTAGATCGTC 59.477 44.000 2.98 0.00 36.50 4.20
43 44 6.103997 GGTTACCACATTTTCTAGATCGTCA 58.896 40.000 0.00 0.00 0.00 4.35
44 45 6.761714 GGTTACCACATTTTCTAGATCGTCAT 59.238 38.462 0.00 0.00 0.00 3.06
45 46 7.280205 GGTTACCACATTTTCTAGATCGTCATT 59.720 37.037 0.00 0.00 0.00 2.57
46 47 8.665685 GTTACCACATTTTCTAGATCGTCATTT 58.334 33.333 0.00 0.00 0.00 2.32
47 48 9.878667 TTACCACATTTTCTAGATCGTCATTTA 57.121 29.630 0.00 0.00 0.00 1.40
48 49 8.786826 ACCACATTTTCTAGATCGTCATTTAA 57.213 30.769 0.00 0.00 0.00 1.52
49 50 8.665685 ACCACATTTTCTAGATCGTCATTTAAC 58.334 33.333 0.00 0.00 0.00 2.01
50 51 8.883731 CCACATTTTCTAGATCGTCATTTAACT 58.116 33.333 0.00 0.00 0.00 2.24
84 85 6.610075 AAAAATGTGGTTATCCATGAGCTT 57.390 33.333 0.00 0.00 46.20 3.74
85 86 5.587388 AAATGTGGTTATCCATGAGCTTG 57.413 39.130 0.00 0.00 46.20 4.01
86 87 3.003394 TGTGGTTATCCATGAGCTTGG 57.997 47.619 0.00 0.00 46.20 3.61
87 88 2.308570 TGTGGTTATCCATGAGCTTGGT 59.691 45.455 4.36 0.00 46.20 3.67
88 89 3.245229 TGTGGTTATCCATGAGCTTGGTT 60.245 43.478 4.36 0.00 46.20 3.67
89 90 3.129287 GTGGTTATCCATGAGCTTGGTTG 59.871 47.826 4.36 0.00 46.20 3.77
90 91 3.010027 TGGTTATCCATGAGCTTGGTTGA 59.990 43.478 4.36 0.00 39.03 3.18
91 92 4.210331 GGTTATCCATGAGCTTGGTTGAT 58.790 43.478 4.36 0.00 38.01 2.57
92 93 5.104151 TGGTTATCCATGAGCTTGGTTGATA 60.104 40.000 4.36 0.00 39.03 2.15
93 94 5.471456 GGTTATCCATGAGCTTGGTTGATAG 59.529 44.000 4.36 0.00 38.01 2.08
94 95 3.565764 TCCATGAGCTTGGTTGATAGG 57.434 47.619 4.36 0.00 38.01 2.57
95 96 3.114606 TCCATGAGCTTGGTTGATAGGA 58.885 45.455 4.36 0.00 38.01 2.94
96 97 3.135348 TCCATGAGCTTGGTTGATAGGAG 59.865 47.826 4.36 0.00 38.01 3.69
97 98 3.135348 CCATGAGCTTGGTTGATAGGAGA 59.865 47.826 0.00 0.00 31.74 3.71
98 99 4.378774 CATGAGCTTGGTTGATAGGAGAG 58.621 47.826 0.00 0.00 0.00 3.20
99 100 2.768527 TGAGCTTGGTTGATAGGAGAGG 59.231 50.000 0.00 0.00 0.00 3.69
100 101 2.769095 GAGCTTGGTTGATAGGAGAGGT 59.231 50.000 0.00 0.00 0.00 3.85
101 102 3.961408 GAGCTTGGTTGATAGGAGAGGTA 59.039 47.826 0.00 0.00 0.00 3.08
102 103 4.561752 AGCTTGGTTGATAGGAGAGGTAT 58.438 43.478 0.00 0.00 0.00 2.73
103 104 4.971924 AGCTTGGTTGATAGGAGAGGTATT 59.028 41.667 0.00 0.00 0.00 1.89
104 105 5.071115 AGCTTGGTTGATAGGAGAGGTATTC 59.929 44.000 0.00 0.00 0.00 1.75
105 106 5.163301 GCTTGGTTGATAGGAGAGGTATTCA 60.163 44.000 0.00 0.00 0.00 2.57
106 107 5.871396 TGGTTGATAGGAGAGGTATTCAC 57.129 43.478 0.00 0.00 0.00 3.18
107 108 5.529289 TGGTTGATAGGAGAGGTATTCACT 58.471 41.667 0.00 0.00 0.00 3.41
108 109 5.363868 TGGTTGATAGGAGAGGTATTCACTG 59.636 44.000 0.00 0.00 0.00 3.66
109 110 5.598830 GGTTGATAGGAGAGGTATTCACTGA 59.401 44.000 0.00 0.00 0.00 3.41
110 111 6.461788 GGTTGATAGGAGAGGTATTCACTGAC 60.462 46.154 0.00 0.00 0.00 3.51
111 112 6.019656 TGATAGGAGAGGTATTCACTGACT 57.980 41.667 0.00 0.00 0.00 3.41
112 113 6.436027 TGATAGGAGAGGTATTCACTGACTT 58.564 40.000 0.00 0.00 0.00 3.01
113 114 6.322456 TGATAGGAGAGGTATTCACTGACTTG 59.678 42.308 0.00 0.00 0.00 3.16
114 115 3.196685 AGGAGAGGTATTCACTGACTTGC 59.803 47.826 0.00 0.00 0.00 4.01
115 116 3.526534 GAGAGGTATTCACTGACTTGCC 58.473 50.000 0.00 0.00 0.00 4.52
116 117 3.177228 AGAGGTATTCACTGACTTGCCT 58.823 45.455 0.00 0.00 0.00 4.75
117 118 3.055530 AGAGGTATTCACTGACTTGCCTG 60.056 47.826 3.35 0.00 0.00 4.85
118 119 1.740025 GGTATTCACTGACTTGCCTGC 59.260 52.381 0.00 0.00 0.00 4.85
119 120 1.740025 GTATTCACTGACTTGCCTGCC 59.260 52.381 0.00 0.00 0.00 4.85
120 121 0.403271 ATTCACTGACTTGCCTGCCT 59.597 50.000 0.00 0.00 0.00 4.75
121 122 0.183492 TTCACTGACTTGCCTGCCTT 59.817 50.000 0.00 0.00 0.00 4.35
122 123 0.183492 TCACTGACTTGCCTGCCTTT 59.817 50.000 0.00 0.00 0.00 3.11
123 124 0.313043 CACTGACTTGCCTGCCTTTG 59.687 55.000 0.00 0.00 0.00 2.77
124 125 0.183492 ACTGACTTGCCTGCCTTTGA 59.817 50.000 0.00 0.00 0.00 2.69
125 126 0.879765 CTGACTTGCCTGCCTTTGAG 59.120 55.000 0.00 0.00 0.00 3.02
126 127 0.538057 TGACTTGCCTGCCTTTGAGG 60.538 55.000 0.00 0.00 38.80 3.86
127 128 0.538287 GACTTGCCTGCCTTTGAGGT 60.538 55.000 0.00 0.00 37.80 3.85
128 129 0.825010 ACTTGCCTGCCTTTGAGGTG 60.825 55.000 0.00 0.00 37.80 4.00
129 130 2.151049 CTTGCCTGCCTTTGAGGTGC 62.151 60.000 0.00 0.00 37.80 5.01
130 131 2.598394 GCCTGCCTTTGAGGTGCA 60.598 61.111 0.00 0.00 37.80 4.57
131 132 1.980772 GCCTGCCTTTGAGGTGCAT 60.981 57.895 0.00 0.00 37.80 3.96
132 133 1.941999 GCCTGCCTTTGAGGTGCATC 61.942 60.000 0.00 0.00 37.80 3.91
133 134 0.609957 CCTGCCTTTGAGGTGCATCA 60.610 55.000 0.00 0.00 37.80 3.07
134 135 1.250328 CTGCCTTTGAGGTGCATCAA 58.750 50.000 0.00 0.00 37.80 2.57
135 136 1.822990 CTGCCTTTGAGGTGCATCAAT 59.177 47.619 0.00 0.00 38.90 2.57
136 137 2.232941 CTGCCTTTGAGGTGCATCAATT 59.767 45.455 0.00 0.00 38.90 2.32
137 138 3.429492 TGCCTTTGAGGTGCATCAATTA 58.571 40.909 0.00 0.00 38.90 1.40
138 139 4.025360 TGCCTTTGAGGTGCATCAATTAT 58.975 39.130 0.00 0.00 38.90 1.28
139 140 4.467082 TGCCTTTGAGGTGCATCAATTATT 59.533 37.500 0.00 0.00 38.90 1.40
140 141 4.807304 GCCTTTGAGGTGCATCAATTATTG 59.193 41.667 0.00 0.00 38.90 1.90
141 142 4.807304 CCTTTGAGGTGCATCAATTATTGC 59.193 41.667 0.00 5.13 38.90 3.56
142 143 5.402997 TTTGAGGTGCATCAATTATTGCA 57.597 34.783 0.00 9.70 46.03 4.08
153 154 9.470399 TGCATCAATTATTGCATCCTATATCTT 57.530 29.630 9.70 0.00 43.54 2.40
154 155 9.947669 GCATCAATTATTGCATCCTATATCTTC 57.052 33.333 0.00 0.00 38.72 2.87
161 162 9.658799 TTATTGCATCCTATATCTTCAACTAGC 57.341 33.333 0.00 0.00 0.00 3.42
162 163 6.670695 TGCATCCTATATCTTCAACTAGCA 57.329 37.500 0.00 0.00 0.00 3.49
163 164 6.695429 TGCATCCTATATCTTCAACTAGCAG 58.305 40.000 0.00 0.00 0.00 4.24
164 165 5.580297 GCATCCTATATCTTCAACTAGCAGC 59.420 44.000 0.00 0.00 0.00 5.25
165 166 5.378292 TCCTATATCTTCAACTAGCAGCG 57.622 43.478 0.00 0.00 0.00 5.18
166 167 5.070685 TCCTATATCTTCAACTAGCAGCGA 58.929 41.667 0.00 0.00 0.00 4.93
167 168 5.712446 TCCTATATCTTCAACTAGCAGCGAT 59.288 40.000 0.00 0.00 0.00 4.58
168 169 6.209589 TCCTATATCTTCAACTAGCAGCGATT 59.790 38.462 0.00 0.00 0.00 3.34
169 170 6.309980 CCTATATCTTCAACTAGCAGCGATTG 59.690 42.308 0.00 1.09 0.00 2.67
170 171 3.592898 TCTTCAACTAGCAGCGATTGA 57.407 42.857 5.25 5.25 0.00 2.57
171 172 4.128925 TCTTCAACTAGCAGCGATTGAT 57.871 40.909 9.11 0.00 31.45 2.57
172 173 4.115516 TCTTCAACTAGCAGCGATTGATC 58.884 43.478 9.11 0.00 31.45 2.92
173 174 3.525268 TCAACTAGCAGCGATTGATCA 57.475 42.857 0.00 0.00 0.00 2.92
174 175 3.860641 TCAACTAGCAGCGATTGATCAA 58.139 40.909 11.26 11.26 0.00 2.57
175 176 3.867493 TCAACTAGCAGCGATTGATCAAG 59.133 43.478 14.54 2.24 0.00 3.02
176 177 2.831333 ACTAGCAGCGATTGATCAAGG 58.169 47.619 14.54 9.37 0.00 3.61
177 178 1.530293 CTAGCAGCGATTGATCAAGGC 59.470 52.381 20.77 20.77 0.00 4.35
178 179 0.393402 AGCAGCGATTGATCAAGGCA 60.393 50.000 26.62 2.49 0.00 4.75
179 180 0.029035 GCAGCGATTGATCAAGGCAG 59.971 55.000 26.62 21.92 0.00 4.85
180 181 1.660167 CAGCGATTGATCAAGGCAGA 58.340 50.000 26.62 1.45 0.00 4.26
181 182 1.598132 CAGCGATTGATCAAGGCAGAG 59.402 52.381 26.62 16.49 0.00 3.35
182 183 1.209019 AGCGATTGATCAAGGCAGAGT 59.791 47.619 26.62 10.82 0.00 3.24
183 184 2.012673 GCGATTGATCAAGGCAGAGTT 58.987 47.619 22.48 2.06 0.00 3.01
184 185 2.223203 GCGATTGATCAAGGCAGAGTTG 60.223 50.000 22.48 7.40 0.00 3.16
185 186 3.005554 CGATTGATCAAGGCAGAGTTGT 58.994 45.455 14.54 0.00 0.00 3.32
186 187 3.181513 CGATTGATCAAGGCAGAGTTGTG 60.182 47.826 14.54 0.00 0.00 3.33
187 188 3.490439 TTGATCAAGGCAGAGTTGTGA 57.510 42.857 3.38 0.00 0.00 3.58
188 189 2.771089 TGATCAAGGCAGAGTTGTGAC 58.229 47.619 0.00 0.00 0.00 3.67
189 190 1.728971 GATCAAGGCAGAGTTGTGACG 59.271 52.381 0.00 0.00 0.00 4.35
190 191 0.880278 TCAAGGCAGAGTTGTGACGC 60.880 55.000 0.00 0.00 0.00 5.19
191 192 1.146041 AAGGCAGAGTTGTGACGCA 59.854 52.632 0.00 0.00 0.00 5.24
192 193 1.160329 AAGGCAGAGTTGTGACGCAC 61.160 55.000 3.44 3.44 34.56 5.34
193 194 1.595382 GGCAGAGTTGTGACGCACT 60.595 57.895 10.54 0.00 35.11 4.40
194 195 1.160329 GGCAGAGTTGTGACGCACTT 61.160 55.000 10.54 0.00 35.11 3.16
195 196 0.657840 GCAGAGTTGTGACGCACTTT 59.342 50.000 10.54 0.00 35.11 2.66
196 197 1.595489 GCAGAGTTGTGACGCACTTTG 60.595 52.381 10.54 2.12 35.11 2.77
197 198 1.933181 CAGAGTTGTGACGCACTTTGA 59.067 47.619 10.54 0.00 35.11 2.69
198 199 2.033407 CAGAGTTGTGACGCACTTTGAG 60.033 50.000 10.54 0.00 35.11 3.02
199 200 1.261619 GAGTTGTGACGCACTTTGAGG 59.738 52.381 10.54 0.00 35.11 3.86
200 201 0.317020 GTTGTGACGCACTTTGAGGC 60.317 55.000 10.54 0.00 35.11 4.70
201 202 1.444119 TTGTGACGCACTTTGAGGCC 61.444 55.000 0.00 0.00 35.11 5.19
202 203 1.891919 GTGACGCACTTTGAGGCCA 60.892 57.895 5.01 0.00 0.00 5.36
203 204 1.597854 TGACGCACTTTGAGGCCAG 60.598 57.895 5.01 0.00 0.00 4.85
204 205 2.281761 ACGCACTTTGAGGCCAGG 60.282 61.111 5.01 0.00 0.00 4.45
205 206 2.032528 CGCACTTTGAGGCCAGGA 59.967 61.111 5.01 0.00 0.00 3.86
206 207 2.037136 CGCACTTTGAGGCCAGGAG 61.037 63.158 5.01 0.00 0.00 3.69
207 208 1.376466 GCACTTTGAGGCCAGGAGA 59.624 57.895 5.01 0.00 0.00 3.71
208 209 0.957888 GCACTTTGAGGCCAGGAGAC 60.958 60.000 5.01 0.00 0.00 3.36
209 210 0.322008 CACTTTGAGGCCAGGAGACC 60.322 60.000 5.01 0.00 0.00 3.85
210 211 1.078848 CTTTGAGGCCAGGAGACCG 60.079 63.158 5.01 0.00 0.00 4.79
211 212 3.254024 TTTGAGGCCAGGAGACCGC 62.254 63.158 5.01 0.00 0.00 5.68
218 219 3.775654 CAGGAGACCGCCCCACTC 61.776 72.222 0.00 0.00 0.00 3.51
221 222 4.436998 GAGACCGCCCCACTCGTG 62.437 72.222 0.00 0.00 0.00 4.35
226 227 4.293648 CGCCCCACTCGTGTGTGA 62.294 66.667 15.79 0.00 42.34 3.58
227 228 2.347490 GCCCCACTCGTGTGTGAT 59.653 61.111 15.79 0.00 42.34 3.06
228 229 1.594833 GCCCCACTCGTGTGTGATA 59.405 57.895 15.79 0.00 42.34 2.15
229 230 0.036765 GCCCCACTCGTGTGTGATAA 60.037 55.000 15.79 0.00 42.34 1.75
230 231 1.406887 GCCCCACTCGTGTGTGATAAT 60.407 52.381 15.79 0.00 42.34 1.28
231 232 2.159014 GCCCCACTCGTGTGTGATAATA 60.159 50.000 15.79 0.00 42.34 0.98
232 233 3.680475 GCCCCACTCGTGTGTGATAATAA 60.680 47.826 15.79 0.00 42.34 1.40
233 234 4.119862 CCCCACTCGTGTGTGATAATAAG 58.880 47.826 15.79 0.00 42.34 1.73
234 235 4.382685 CCCCACTCGTGTGTGATAATAAGT 60.383 45.833 15.79 0.00 42.34 2.24
235 236 5.175859 CCCACTCGTGTGTGATAATAAGTT 58.824 41.667 15.79 0.00 42.34 2.66
236 237 6.334989 CCCACTCGTGTGTGATAATAAGTTA 58.665 40.000 15.79 0.00 42.34 2.24
237 238 6.814644 CCCACTCGTGTGTGATAATAAGTTAA 59.185 38.462 15.79 0.00 42.34 2.01
238 239 7.494625 CCCACTCGTGTGTGATAATAAGTTAAT 59.505 37.037 15.79 0.00 42.34 1.40
239 240 9.524106 CCACTCGTGTGTGATAATAAGTTAATA 57.476 33.333 15.79 0.00 42.34 0.98
247 248 9.893305 GTGTGATAATAAGTTAATAATGTGCCC 57.107 33.333 0.00 0.00 0.00 5.36
248 249 9.860650 TGTGATAATAAGTTAATAATGTGCCCT 57.139 29.630 0.00 0.00 0.00 5.19
250 251 8.792633 TGATAATAAGTTAATAATGTGCCCTGC 58.207 33.333 0.00 0.00 0.00 4.85
251 252 8.940397 ATAATAAGTTAATAATGTGCCCTGCT 57.060 30.769 0.00 0.00 0.00 4.24
252 253 7.660030 AATAAGTTAATAATGTGCCCTGCTT 57.340 32.000 0.00 0.00 0.00 3.91
253 254 4.989279 AGTTAATAATGTGCCCTGCTTG 57.011 40.909 0.00 0.00 0.00 4.01
254 255 4.599041 AGTTAATAATGTGCCCTGCTTGA 58.401 39.130 0.00 0.00 0.00 3.02
255 256 5.203528 AGTTAATAATGTGCCCTGCTTGAT 58.796 37.500 0.00 0.00 0.00 2.57
256 257 5.068198 AGTTAATAATGTGCCCTGCTTGATG 59.932 40.000 0.00 0.00 0.00 3.07
257 258 1.105457 TAATGTGCCCTGCTTGATGC 58.895 50.000 0.00 0.00 43.25 3.91
258 259 0.613853 AATGTGCCCTGCTTGATGCT 60.614 50.000 0.00 0.00 43.37 3.79
259 260 0.613853 ATGTGCCCTGCTTGATGCTT 60.614 50.000 0.00 0.00 43.37 3.91
260 261 1.214589 GTGCCCTGCTTGATGCTTG 59.785 57.895 0.00 0.00 43.37 4.01
261 262 2.183555 GCCCTGCTTGATGCTTGC 59.816 61.111 0.00 0.00 43.37 4.01
262 263 2.642254 GCCCTGCTTGATGCTTGCA 61.642 57.895 0.00 0.00 43.37 4.08
263 264 1.956629 GCCCTGCTTGATGCTTGCAT 61.957 55.000 7.91 7.91 43.37 3.96
264 265 1.395635 CCCTGCTTGATGCTTGCATA 58.604 50.000 8.17 0.00 43.37 3.14
265 266 1.066605 CCCTGCTTGATGCTTGCATAC 59.933 52.381 8.17 3.58 43.37 2.39
266 267 1.746787 CCTGCTTGATGCTTGCATACA 59.253 47.619 8.17 5.97 43.37 2.29
267 268 2.223502 CCTGCTTGATGCTTGCATACAG 60.224 50.000 8.17 12.42 43.37 2.74
268 269 2.422479 CTGCTTGATGCTTGCATACAGT 59.578 45.455 8.17 0.00 43.37 3.55
269 270 3.608796 TGCTTGATGCTTGCATACAGTA 58.391 40.909 8.17 4.47 43.37 2.74
270 271 3.624410 TGCTTGATGCTTGCATACAGTAG 59.376 43.478 8.17 5.57 43.37 2.57
271 272 3.003068 GCTTGATGCTTGCATACAGTAGG 59.997 47.826 8.17 0.00 38.95 3.18
272 273 3.912496 TGATGCTTGCATACAGTAGGT 57.088 42.857 8.17 0.00 0.00 3.08
273 274 3.534554 TGATGCTTGCATACAGTAGGTG 58.465 45.455 8.17 0.00 0.00 4.00
274 275 3.055167 TGATGCTTGCATACAGTAGGTGT 60.055 43.478 8.17 0.00 43.86 4.16
275 276 2.972625 TGCTTGCATACAGTAGGTGTC 58.027 47.619 0.00 0.00 40.94 3.67
276 277 1.927174 GCTTGCATACAGTAGGTGTCG 59.073 52.381 0.00 0.00 40.94 4.35
277 278 2.416836 GCTTGCATACAGTAGGTGTCGA 60.417 50.000 0.00 0.00 40.94 4.20
278 279 3.738281 GCTTGCATACAGTAGGTGTCGAT 60.738 47.826 0.00 0.00 40.94 3.59
279 280 3.710326 TGCATACAGTAGGTGTCGATC 57.290 47.619 0.00 0.00 40.94 3.69
280 281 3.020984 TGCATACAGTAGGTGTCGATCA 58.979 45.455 0.00 0.00 40.94 2.92
281 282 3.445805 TGCATACAGTAGGTGTCGATCAA 59.554 43.478 0.00 0.00 40.94 2.57
282 283 4.081917 TGCATACAGTAGGTGTCGATCAAA 60.082 41.667 0.00 0.00 40.94 2.69
283 284 4.868171 GCATACAGTAGGTGTCGATCAAAA 59.132 41.667 0.00 0.00 40.94 2.44
284 285 5.350365 GCATACAGTAGGTGTCGATCAAAAA 59.650 40.000 0.00 0.00 40.94 1.94
285 286 6.455646 GCATACAGTAGGTGTCGATCAAAAAG 60.456 42.308 0.00 0.00 40.94 2.27
286 287 5.209818 ACAGTAGGTGTCGATCAAAAAGA 57.790 39.130 0.00 0.00 31.90 2.52
287 288 4.989168 ACAGTAGGTGTCGATCAAAAAGAC 59.011 41.667 0.00 0.00 31.90 3.01
288 289 5.221461 ACAGTAGGTGTCGATCAAAAAGACT 60.221 40.000 0.00 0.00 31.90 3.24
289 290 5.346281 CAGTAGGTGTCGATCAAAAAGACTC 59.654 44.000 0.00 0.00 36.01 3.36
290 291 3.318017 AGGTGTCGATCAAAAAGACTCG 58.682 45.455 0.00 0.00 36.01 4.18
291 292 3.057734 GGTGTCGATCAAAAAGACTCGT 58.942 45.455 0.00 0.00 36.01 4.18
292 293 3.120991 GGTGTCGATCAAAAAGACTCGTG 60.121 47.826 0.00 0.00 36.01 4.35
293 294 3.489785 GTGTCGATCAAAAAGACTCGTGT 59.510 43.478 0.00 0.00 36.01 4.49
294 295 4.678287 GTGTCGATCAAAAAGACTCGTGTA 59.322 41.667 0.00 0.00 36.01 2.90
295 296 5.345202 GTGTCGATCAAAAAGACTCGTGTAT 59.655 40.000 0.00 0.00 36.01 2.29
296 297 5.344933 TGTCGATCAAAAAGACTCGTGTATG 59.655 40.000 0.00 0.00 36.01 2.39
297 298 5.571741 GTCGATCAAAAAGACTCGTGTATGA 59.428 40.000 0.00 0.00 32.66 2.15
298 299 6.253727 GTCGATCAAAAAGACTCGTGTATGAT 59.746 38.462 0.00 0.00 32.66 2.45
299 300 7.431376 GTCGATCAAAAAGACTCGTGTATGATA 59.569 37.037 0.00 0.00 32.66 2.15
300 301 7.971722 TCGATCAAAAAGACTCGTGTATGATAA 59.028 33.333 0.00 0.00 32.66 1.75
301 302 8.262588 CGATCAAAAAGACTCGTGTATGATAAG 58.737 37.037 0.00 0.00 0.00 1.73
302 303 9.302345 GATCAAAAAGACTCGTGTATGATAAGA 57.698 33.333 0.00 0.00 0.00 2.10
303 304 9.653287 ATCAAAAAGACTCGTGTATGATAAGAA 57.347 29.630 0.00 0.00 0.00 2.52
304 305 9.653287 TCAAAAAGACTCGTGTATGATAAGAAT 57.347 29.630 0.00 0.00 0.00 2.40
320 321 7.881142 TGATAAGAATTTAATAATGTGCCCCG 58.119 34.615 0.00 0.00 0.00 5.73
321 322 4.584327 AGAATTTAATAATGTGCCCCGC 57.416 40.909 0.00 0.00 0.00 6.13
322 323 4.215109 AGAATTTAATAATGTGCCCCGCT 58.785 39.130 0.00 0.00 0.00 5.52
323 324 4.649218 AGAATTTAATAATGTGCCCCGCTT 59.351 37.500 0.00 0.00 0.00 4.68
324 325 3.791973 TTTAATAATGTGCCCCGCTTG 57.208 42.857 0.00 0.00 0.00 4.01
325 326 2.719531 TAATAATGTGCCCCGCTTGA 57.280 45.000 0.00 0.00 0.00 3.02
326 327 2.071778 AATAATGTGCCCCGCTTGAT 57.928 45.000 0.00 0.00 0.00 2.57
327 328 1.321474 ATAATGTGCCCCGCTTGATG 58.679 50.000 0.00 0.00 0.00 3.07
328 329 0.751277 TAATGTGCCCCGCTTGATGG 60.751 55.000 0.00 0.00 0.00 3.51
329 330 2.786512 AATGTGCCCCGCTTGATGGT 62.787 55.000 0.00 0.00 0.00 3.55
330 331 3.443045 GTGCCCCGCTTGATGGTG 61.443 66.667 0.00 0.00 0.00 4.17
331 332 3.965258 TGCCCCGCTTGATGGTGT 61.965 61.111 0.00 0.00 0.00 4.16
332 333 2.270850 GCCCCGCTTGATGGTGTA 59.729 61.111 0.00 0.00 0.00 2.90
333 334 1.152963 GCCCCGCTTGATGGTGTAT 60.153 57.895 0.00 0.00 0.00 2.29
334 335 0.107831 GCCCCGCTTGATGGTGTATA 59.892 55.000 0.00 0.00 0.00 1.47
335 336 1.878953 CCCCGCTTGATGGTGTATAC 58.121 55.000 0.00 0.00 0.00 1.47
336 337 1.140052 CCCCGCTTGATGGTGTATACA 59.860 52.381 0.08 0.08 0.00 2.29
337 338 2.483876 CCCGCTTGATGGTGTATACAG 58.516 52.381 5.62 0.00 0.00 2.74
338 339 2.158957 CCCGCTTGATGGTGTATACAGT 60.159 50.000 5.62 0.00 0.00 3.55
339 340 2.866156 CCGCTTGATGGTGTATACAGTG 59.134 50.000 5.62 0.00 0.00 3.66
340 341 3.521560 CGCTTGATGGTGTATACAGTGT 58.478 45.455 5.62 0.00 0.00 3.55
341 342 3.306973 CGCTTGATGGTGTATACAGTGTG 59.693 47.826 5.62 0.00 0.00 3.82
342 343 4.253685 GCTTGATGGTGTATACAGTGTGT 58.746 43.478 5.62 0.90 0.00 3.72
343 344 4.330074 GCTTGATGGTGTATACAGTGTGTC 59.670 45.833 5.62 1.78 0.00 3.67
344 345 4.104696 TGATGGTGTATACAGTGTGTCG 57.895 45.455 5.62 0.00 0.00 4.35
345 346 3.759618 TGATGGTGTATACAGTGTGTCGA 59.240 43.478 5.62 0.00 0.00 4.20
346 347 4.401202 TGATGGTGTATACAGTGTGTCGAT 59.599 41.667 5.62 0.00 0.00 3.59
347 348 4.365899 TGGTGTATACAGTGTGTCGATC 57.634 45.455 5.62 0.00 0.00 3.69
348 349 3.759618 TGGTGTATACAGTGTGTCGATCA 59.240 43.478 5.62 0.00 0.00 2.92
349 350 4.218852 TGGTGTATACAGTGTGTCGATCAA 59.781 41.667 5.62 0.00 0.00 2.57
350 351 5.165676 GGTGTATACAGTGTGTCGATCAAA 58.834 41.667 5.62 0.00 0.00 2.69
351 352 5.636121 GGTGTATACAGTGTGTCGATCAAAA 59.364 40.000 5.62 0.00 0.00 2.44
352 353 6.146510 GGTGTATACAGTGTGTCGATCAAAAA 59.853 38.462 5.62 0.00 0.00 1.94
353 354 7.227461 GTGTATACAGTGTGTCGATCAAAAAG 58.773 38.462 5.62 0.00 0.00 2.27
354 355 7.115805 GTGTATACAGTGTGTCGATCAAAAAGA 59.884 37.037 5.62 0.00 0.00 2.52
355 356 4.795970 ACAGTGTGTCGATCAAAAAGAC 57.204 40.909 0.00 0.00 35.61 3.01
356 357 4.442706 ACAGTGTGTCGATCAAAAAGACT 58.557 39.130 0.00 0.00 36.01 3.24
357 358 4.508124 ACAGTGTGTCGATCAAAAAGACTC 59.492 41.667 0.00 0.00 36.01 3.36
358 359 3.736252 AGTGTGTCGATCAAAAAGACTCG 59.264 43.478 0.00 0.00 36.01 4.18
359 360 3.489785 GTGTGTCGATCAAAAAGACTCGT 59.510 43.478 0.00 0.00 36.01 4.18
360 361 4.025979 GTGTGTCGATCAAAAAGACTCGTT 60.026 41.667 0.00 0.00 36.01 3.85
361 362 4.569162 TGTGTCGATCAAAAAGACTCGTTT 59.431 37.500 0.00 0.00 36.01 3.60
362 363 4.898488 GTGTCGATCAAAAAGACTCGTTTG 59.102 41.667 0.00 5.57 36.30 2.93
363 364 4.569162 TGTCGATCAAAAAGACTCGTTTGT 59.431 37.500 10.00 1.35 36.36 2.83
364 365 4.898488 GTCGATCAAAAAGACTCGTTTGTG 59.102 41.667 10.00 0.00 36.36 3.33
365 366 4.806775 TCGATCAAAAAGACTCGTTTGTGA 59.193 37.500 10.00 0.00 37.91 3.58
366 367 5.465390 TCGATCAAAAAGACTCGTTTGTGAT 59.535 36.000 2.33 2.33 43.98 3.06
367 368 6.643360 TCGATCAAAAAGACTCGTTTGTGATA 59.357 34.615 2.66 0.00 42.19 2.15
368 369 7.170151 TCGATCAAAAAGACTCGTTTGTGATAA 59.830 33.333 2.66 0.00 42.19 1.75
369 370 7.796660 CGATCAAAAAGACTCGTTTGTGATAAA 59.203 33.333 2.66 0.00 42.19 1.40
370 371 9.445786 GATCAAAAAGACTCGTTTGTGATAAAA 57.554 29.630 2.66 0.00 42.19 1.52
371 372 9.796120 ATCAAAAAGACTCGTTTGTGATAAAAA 57.204 25.926 10.00 0.00 40.94 1.94
372 373 9.796120 TCAAAAAGACTCGTTTGTGATAAAAAT 57.204 25.926 10.00 0.00 36.36 1.82
389 390 9.522804 TGATAAAAATTTAATAATGTGTCCGGC 57.477 29.630 0.00 0.00 0.00 6.13
390 391 9.744468 GATAAAAATTTAATAATGTGTCCGGCT 57.256 29.630 0.00 0.00 0.00 5.52
392 393 7.826260 AAAATTTAATAATGTGTCCGGCTTG 57.174 32.000 0.00 0.00 0.00 4.01
393 394 6.767524 AATTTAATAATGTGTCCGGCTTGA 57.232 33.333 0.00 0.00 0.00 3.02
394 395 6.959639 ATTTAATAATGTGTCCGGCTTGAT 57.040 33.333 0.00 0.00 0.00 2.57
395 396 5.749596 TTAATAATGTGTCCGGCTTGATG 57.250 39.130 0.00 0.00 0.00 3.07
396 397 1.378531 TAATGTGTCCGGCTTGATGC 58.621 50.000 0.00 0.00 41.94 3.91
397 398 0.322816 AATGTGTCCGGCTTGATGCT 60.323 50.000 0.00 0.00 42.39 3.79
399 400 1.672356 GTGTCCGGCTTGATGCTGT 60.672 57.895 0.00 0.00 46.27 4.40
400 401 0.391130 GTGTCCGGCTTGATGCTGTA 60.391 55.000 0.00 0.00 46.27 2.74
401 402 0.541392 TGTCCGGCTTGATGCTGTAT 59.459 50.000 0.00 0.00 46.27 2.29
402 403 1.760029 TGTCCGGCTTGATGCTGTATA 59.240 47.619 0.00 0.00 46.27 1.47
403 404 2.135933 GTCCGGCTTGATGCTGTATAC 58.864 52.381 0.00 0.00 46.27 1.47
404 405 1.070134 TCCGGCTTGATGCTGTATACC 59.930 52.381 0.00 0.00 46.27 2.73
405 406 1.139989 CGGCTTGATGCTGTATACCG 58.860 55.000 0.00 0.00 42.87 4.02
406 407 1.538204 CGGCTTGATGCTGTATACCGT 60.538 52.381 0.00 0.00 42.87 4.83
407 408 2.287970 CGGCTTGATGCTGTATACCGTA 60.288 50.000 0.00 0.00 42.87 4.02
408 409 3.318017 GGCTTGATGCTGTATACCGTAG 58.682 50.000 0.00 0.00 42.39 3.51
410 411 4.406992 GCTTGATGCTGTATACCGTAGGC 61.407 52.174 0.00 0.00 46.76 3.93
424 425 4.104696 CCGTAGGCCAATAAAAAGGTTG 57.895 45.455 5.01 0.00 46.14 3.77
425 426 3.759618 CCGTAGGCCAATAAAAAGGTTGA 59.240 43.478 5.01 0.00 46.14 3.18
426 427 4.142469 CCGTAGGCCAATAAAAAGGTTGAG 60.142 45.833 5.01 0.00 46.14 3.02
427 428 4.142469 CGTAGGCCAATAAAAAGGTTGAGG 60.142 45.833 5.01 0.00 0.00 3.86
428 429 4.126520 AGGCCAATAAAAAGGTTGAGGA 57.873 40.909 5.01 0.00 0.00 3.71
429 430 4.488770 AGGCCAATAAAAAGGTTGAGGAA 58.511 39.130 5.01 0.00 0.00 3.36
430 431 5.093677 AGGCCAATAAAAAGGTTGAGGAAT 58.906 37.500 5.01 0.00 0.00 3.01
431 432 5.187772 AGGCCAATAAAAAGGTTGAGGAATC 59.812 40.000 5.01 0.00 0.00 2.52
432 433 5.046663 GGCCAATAAAAAGGTTGAGGAATCA 60.047 40.000 0.00 0.00 0.00 2.57
433 434 5.869344 GCCAATAAAAAGGTTGAGGAATCAC 59.131 40.000 0.00 0.00 0.00 3.06
434 435 6.518200 GCCAATAAAAAGGTTGAGGAATCACA 60.518 38.462 0.00 0.00 0.00 3.58
435 436 7.614494 CCAATAAAAAGGTTGAGGAATCACAT 58.386 34.615 0.00 0.00 0.00 3.21
436 437 8.748412 CCAATAAAAAGGTTGAGGAATCACATA 58.252 33.333 0.00 0.00 0.00 2.29
464 465 5.107109 TGTGAACACAACATATGACAAGC 57.893 39.130 10.38 0.00 38.56 4.01
465 466 4.578105 TGTGAACACAACATATGACAAGCA 59.422 37.500 10.38 0.00 38.56 3.91
466 467 5.241285 TGTGAACACAACATATGACAAGCAT 59.759 36.000 10.38 0.00 38.56 3.79
467 468 5.570206 GTGAACACAACATATGACAAGCATG 59.430 40.000 10.38 0.00 37.87 4.06
468 469 4.707030 ACACAACATATGACAAGCATGG 57.293 40.909 10.38 0.00 37.87 3.66
469 470 3.444742 ACACAACATATGACAAGCATGGG 59.555 43.478 10.38 0.74 37.87 4.00
470 471 2.428171 ACAACATATGACAAGCATGGGC 59.572 45.455 10.38 0.00 37.87 5.36
471 472 2.427812 CAACATATGACAAGCATGGGCA 59.572 45.455 10.38 0.00 44.61 5.36
472 473 2.737544 ACATATGACAAGCATGGGCAA 58.262 42.857 10.38 0.00 44.61 4.52
473 474 2.691526 ACATATGACAAGCATGGGCAAG 59.308 45.455 10.38 0.00 44.61 4.01
474 475 2.804986 TATGACAAGCATGGGCAAGA 57.195 45.000 0.00 0.00 44.61 3.02
475 476 2.154567 ATGACAAGCATGGGCAAGAT 57.845 45.000 0.00 0.00 44.61 2.40
476 477 2.804986 TGACAAGCATGGGCAAGATA 57.195 45.000 0.00 0.00 44.61 1.98
477 478 2.368439 TGACAAGCATGGGCAAGATAC 58.632 47.619 0.00 0.00 44.61 2.24
478 479 2.025981 TGACAAGCATGGGCAAGATACT 60.026 45.455 0.00 0.00 44.61 2.12
479 480 3.019564 GACAAGCATGGGCAAGATACTT 58.980 45.455 0.00 0.00 44.61 2.24
480 481 3.434309 ACAAGCATGGGCAAGATACTTT 58.566 40.909 0.00 0.00 44.61 2.66
481 482 3.834231 ACAAGCATGGGCAAGATACTTTT 59.166 39.130 0.00 0.00 44.61 2.27
482 483 4.178540 CAAGCATGGGCAAGATACTTTTG 58.821 43.478 0.00 0.00 44.61 2.44
483 484 3.700538 AGCATGGGCAAGATACTTTTGA 58.299 40.909 0.00 0.00 44.61 2.69
484 485 3.445096 AGCATGGGCAAGATACTTTTGAC 59.555 43.478 0.00 0.00 44.61 3.18
490 491 5.453567 GGCAAGATACTTTTGACCACTTT 57.546 39.130 0.00 0.00 0.00 2.66
491 492 5.461526 GGCAAGATACTTTTGACCACTTTC 58.538 41.667 0.00 0.00 0.00 2.62
492 493 5.461526 GCAAGATACTTTTGACCACTTTCC 58.538 41.667 0.00 0.00 0.00 3.13
493 494 5.009610 GCAAGATACTTTTGACCACTTTCCA 59.990 40.000 0.00 0.00 0.00 3.53
494 495 6.294731 GCAAGATACTTTTGACCACTTTCCAT 60.295 38.462 0.00 0.00 0.00 3.41
495 496 6.824305 AGATACTTTTGACCACTTTCCATG 57.176 37.500 0.00 0.00 0.00 3.66
496 497 6.542821 AGATACTTTTGACCACTTTCCATGA 58.457 36.000 0.00 0.00 0.00 3.07
497 498 7.177878 AGATACTTTTGACCACTTTCCATGAT 58.822 34.615 0.00 0.00 0.00 2.45
514 515 4.463539 CCATGATGATGGTTGGTTTTCTCA 59.536 41.667 2.51 0.00 43.98 3.27
523 524 5.799213 TGGTTGGTTTTCTCATGTGTTTTT 58.201 33.333 0.00 0.00 0.00 1.94
556 599 3.947041 ACTCCCCCACTCTGGCCT 61.947 66.667 3.32 0.00 35.79 5.19
567 614 0.538057 CTCTGGCCTCCTGCAAACAA 60.538 55.000 3.32 0.00 43.89 2.83
579 626 1.355210 CAAACAAACCGTCGCTGCT 59.645 52.632 0.00 0.00 0.00 4.24
586 633 2.088674 AACCGTCGCTGCTCACTTCT 62.089 55.000 0.00 0.00 0.00 2.85
596 643 1.801913 CTCACTTCTTCCGTCGCCG 60.802 63.158 0.00 0.00 0.00 6.46
597 644 3.479269 CACTTCTTCCGTCGCCGC 61.479 66.667 0.00 0.00 0.00 6.53
598 645 3.986006 ACTTCTTCCGTCGCCGCA 61.986 61.111 0.00 0.00 0.00 5.69
599 646 2.509336 CTTCTTCCGTCGCCGCAT 60.509 61.111 0.00 0.00 0.00 4.73
600 647 2.802667 CTTCTTCCGTCGCCGCATG 61.803 63.158 0.00 0.00 0.00 4.06
618 665 0.394192 TGCCCGCATCTCTATTCCTG 59.606 55.000 0.00 0.00 0.00 3.86
629 676 1.138859 TCTATTCCTGGTGGATGTGCG 59.861 52.381 0.00 0.00 42.81 5.34
632 679 2.746412 TTCCTGGTGGATGTGCGGTG 62.746 60.000 0.00 0.00 42.81 4.94
635 682 4.722700 GGTGGATGTGCGGTGCCT 62.723 66.667 0.00 0.00 0.00 4.75
636 683 3.434319 GTGGATGTGCGGTGCCTG 61.434 66.667 0.00 0.00 0.00 4.85
637 684 3.952508 TGGATGTGCGGTGCCTGT 61.953 61.111 0.00 0.00 0.00 4.00
638 685 3.127533 GGATGTGCGGTGCCTGTC 61.128 66.667 0.00 0.00 0.00 3.51
639 686 2.358615 GATGTGCGGTGCCTGTCA 60.359 61.111 0.00 0.00 0.00 3.58
640 687 1.746615 GATGTGCGGTGCCTGTCAT 60.747 57.895 0.00 0.00 0.00 3.06
641 688 1.303561 ATGTGCGGTGCCTGTCATT 60.304 52.632 0.00 0.00 0.00 2.57
642 689 0.895100 ATGTGCGGTGCCTGTCATTT 60.895 50.000 0.00 0.00 0.00 2.32
675 728 4.207281 TTCGCTCCGAGCCATCCG 62.207 66.667 14.85 0.39 38.18 4.18
782 838 2.398554 CGGTCTCCGGCATTGTTGG 61.399 63.158 0.00 0.00 44.15 3.77
783 839 1.303317 GGTCTCCGGCATTGTTGGT 60.303 57.895 0.00 0.00 0.00 3.67
784 840 0.893727 GGTCTCCGGCATTGTTGGTT 60.894 55.000 0.00 0.00 0.00 3.67
786 842 0.179004 TCTCCGGCATTGTTGGTTGT 60.179 50.000 0.00 0.00 0.00 3.32
787 843 0.673437 CTCCGGCATTGTTGGTTGTT 59.327 50.000 0.00 0.00 0.00 2.83
789 845 1.220817 CCGGCATTGTTGGTTGTTGC 61.221 55.000 0.00 0.00 0.00 4.17
792 848 1.130955 GCATTGTTGGTTGTTGCGAG 58.869 50.000 0.00 0.00 0.00 5.03
793 849 1.268999 GCATTGTTGGTTGTTGCGAGA 60.269 47.619 0.00 0.00 0.00 4.04
794 850 2.797792 GCATTGTTGGTTGTTGCGAGAA 60.798 45.455 0.00 0.00 0.00 2.87
795 851 2.842208 TTGTTGGTTGTTGCGAGAAG 57.158 45.000 0.00 0.00 0.00 2.85
796 852 2.031258 TGTTGGTTGTTGCGAGAAGA 57.969 45.000 0.00 0.00 0.00 2.87
921 1056 3.826157 CAGGATCTACTCTAAGCCTGGAG 59.174 52.174 0.00 0.00 39.30 3.86
925 1060 2.175931 TCTACTCTAAGCCTGGAGAGGG 59.824 54.545 13.61 7.46 43.00 4.30
990 1144 1.227263 CTATCCACCCTTGCCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
1107 1267 1.336240 GCCAACCAGCTGCTAAACAAG 60.336 52.381 8.66 0.00 0.00 3.16
1164 1324 2.407210 CGCGCACACCAACTGTTT 59.593 55.556 8.75 0.00 0.00 2.83
1183 1343 0.318869 TGACAAATTGCTGCGCCAAG 60.319 50.000 4.18 0.00 0.00 3.61
1335 1501 2.024918 GGTGATAGCGCCCAACATG 58.975 57.895 2.29 0.00 38.80 3.21
1346 1512 2.081462 GCCCAACATGTACACCTACAC 58.919 52.381 0.00 0.00 35.63 2.90
1363 1529 5.188948 ACCTACACCATACTAATTGACTGCA 59.811 40.000 0.00 0.00 0.00 4.41
1743 1913 0.178975 TGAAATGAAACAGCGGGGGT 60.179 50.000 0.00 0.00 0.00 4.95
1924 2095 2.479275 GCCAGTTTGAAGAGGTCGTTAC 59.521 50.000 0.00 0.00 0.00 2.50
2169 2340 6.191657 TGATGGCAAGAGATGGTATTGTAT 57.808 37.500 0.00 0.00 0.00 2.29
2297 2468 6.057533 CCCTGATGAAGTCACATATTTAGCA 58.942 40.000 0.00 0.00 32.22 3.49
2491 4271 3.210074 ACCAAGGGTATCCATCCTAGACT 59.790 47.826 0.00 0.00 32.11 3.24
2493 4273 4.227197 CAAGGGTATCCATCCTAGACTGT 58.773 47.826 0.00 0.00 34.83 3.55
2494 4274 4.120946 AGGGTATCCATCCTAGACTGTC 57.879 50.000 0.00 0.00 34.83 3.51
2541 4485 4.691216 GGTACCTCATGAGTCAACTGTTTC 59.309 45.833 21.11 7.60 0.00 2.78
2581 4550 4.261197 GGCTATTTTCGTCATGGTGATTCC 60.261 45.833 0.00 0.00 0.00 3.01
2582 4551 4.576463 GCTATTTTCGTCATGGTGATTCCT 59.424 41.667 0.00 0.00 37.07 3.36
2583 4552 5.066505 GCTATTTTCGTCATGGTGATTCCTT 59.933 40.000 0.00 0.00 37.07 3.36
2584 4553 6.260050 GCTATTTTCGTCATGGTGATTCCTTA 59.740 38.462 0.00 0.00 37.07 2.69
2585 4554 7.201696 GCTATTTTCGTCATGGTGATTCCTTAA 60.202 37.037 0.00 0.00 37.07 1.85
2586 4555 6.885952 TTTTCGTCATGGTGATTCCTTAAA 57.114 33.333 0.00 0.00 37.07 1.52
2587 4556 6.885952 TTTCGTCATGGTGATTCCTTAAAA 57.114 33.333 0.00 0.00 37.07 1.52
2588 4557 6.494893 TTCGTCATGGTGATTCCTTAAAAG 57.505 37.500 0.00 0.00 37.07 2.27
2589 4558 4.394920 TCGTCATGGTGATTCCTTAAAAGC 59.605 41.667 0.00 0.00 37.07 3.51
2590 4559 4.438744 CGTCATGGTGATTCCTTAAAAGCC 60.439 45.833 0.00 0.00 37.07 4.35
2857 4832 4.261994 GGCTGCTGTAAAAATGGAAGAACA 60.262 41.667 0.00 0.00 0.00 3.18
3046 5044 0.396001 GAAGCTACTCCCTCCGTCCT 60.396 60.000 0.00 0.00 0.00 3.85
3058 5056 5.900437 TCCCTCCGTCCTAATATAAGTGAT 58.100 41.667 0.00 0.00 0.00 3.06
3253 5390 4.339872 TGAGTTTTACTTAGTTGCCCGA 57.660 40.909 0.00 0.00 0.00 5.14
3272 5410 0.376152 ACGACGGTGCTGTCTATACG 59.624 55.000 9.19 0.00 36.71 3.06
3602 6420 3.247442 CAAATGCGTGCATCTGAACAAT 58.753 40.909 7.94 0.00 35.31 2.71
3606 6424 3.051327 TGCGTGCATCTGAACAATTTTG 58.949 40.909 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.820152 GGTAACCCACGATAATAGACTGTTTT 59.180 38.462 0.00 0.00 0.00 2.43
1 2 6.070653 TGGTAACCCACGATAATAGACTGTTT 60.071 38.462 0.00 0.00 35.17 2.83
3 4 4.957954 TGGTAACCCACGATAATAGACTGT 59.042 41.667 0.00 0.00 35.17 3.55
4 5 5.524971 TGGTAACCCACGATAATAGACTG 57.475 43.478 0.00 0.00 35.17 3.51
17 18 5.046159 ACGATCTAGAAAATGTGGTAACCCA 60.046 40.000 0.00 0.00 38.87 4.51
18 19 5.425630 ACGATCTAGAAAATGTGGTAACCC 58.574 41.667 0.00 0.00 0.00 4.11
19 20 6.103997 TGACGATCTAGAAAATGTGGTAACC 58.896 40.000 0.00 0.00 0.00 2.85
20 21 7.772332 ATGACGATCTAGAAAATGTGGTAAC 57.228 36.000 0.00 0.00 0.00 2.50
21 22 8.786826 AAATGACGATCTAGAAAATGTGGTAA 57.213 30.769 0.00 0.00 0.00 2.85
22 23 9.878667 TTAAATGACGATCTAGAAAATGTGGTA 57.121 29.630 0.00 0.00 0.00 3.25
23 24 8.665685 GTTAAATGACGATCTAGAAAATGTGGT 58.334 33.333 0.00 0.00 0.00 4.16
24 25 8.883731 AGTTAAATGACGATCTAGAAAATGTGG 58.116 33.333 0.00 0.00 0.00 4.17
69 70 3.620488 TCAACCAAGCTCATGGATAACC 58.380 45.455 11.52 0.00 43.54 2.85
70 71 5.471456 CCTATCAACCAAGCTCATGGATAAC 59.529 44.000 11.52 0.00 43.54 1.89
71 72 5.369404 TCCTATCAACCAAGCTCATGGATAA 59.631 40.000 11.52 0.00 43.54 1.75
72 73 4.907269 TCCTATCAACCAAGCTCATGGATA 59.093 41.667 11.52 3.68 43.54 2.59
73 74 3.718434 TCCTATCAACCAAGCTCATGGAT 59.282 43.478 11.52 0.00 43.54 3.41
74 75 3.114606 TCCTATCAACCAAGCTCATGGA 58.885 45.455 11.52 0.00 43.54 3.41
75 76 3.135348 TCTCCTATCAACCAAGCTCATGG 59.865 47.826 2.71 2.71 46.38 3.66
76 77 4.378774 CTCTCCTATCAACCAAGCTCATG 58.621 47.826 0.00 0.00 0.00 3.07
77 78 3.390639 CCTCTCCTATCAACCAAGCTCAT 59.609 47.826 0.00 0.00 0.00 2.90
78 79 2.768527 CCTCTCCTATCAACCAAGCTCA 59.231 50.000 0.00 0.00 0.00 4.26
79 80 2.769095 ACCTCTCCTATCAACCAAGCTC 59.231 50.000 0.00 0.00 0.00 4.09
80 81 2.839228 ACCTCTCCTATCAACCAAGCT 58.161 47.619 0.00 0.00 0.00 3.74
81 82 4.965200 ATACCTCTCCTATCAACCAAGC 57.035 45.455 0.00 0.00 0.00 4.01
82 83 6.098982 AGTGAATACCTCTCCTATCAACCAAG 59.901 42.308 0.00 0.00 0.00 3.61
83 84 5.964477 AGTGAATACCTCTCCTATCAACCAA 59.036 40.000 0.00 0.00 0.00 3.67
84 85 5.363868 CAGTGAATACCTCTCCTATCAACCA 59.636 44.000 0.00 0.00 0.00 3.67
85 86 5.598830 TCAGTGAATACCTCTCCTATCAACC 59.401 44.000 0.00 0.00 0.00 3.77
86 87 6.322712 AGTCAGTGAATACCTCTCCTATCAAC 59.677 42.308 0.00 0.00 0.00 3.18
87 88 6.436027 AGTCAGTGAATACCTCTCCTATCAA 58.564 40.000 0.00 0.00 0.00 2.57
88 89 6.019656 AGTCAGTGAATACCTCTCCTATCA 57.980 41.667 0.00 0.00 0.00 2.15
89 90 6.737346 GCAAGTCAGTGAATACCTCTCCTATC 60.737 46.154 0.00 0.00 0.00 2.08
90 91 5.069781 GCAAGTCAGTGAATACCTCTCCTAT 59.930 44.000 0.00 0.00 0.00 2.57
91 92 4.402793 GCAAGTCAGTGAATACCTCTCCTA 59.597 45.833 0.00 0.00 0.00 2.94
92 93 3.196685 GCAAGTCAGTGAATACCTCTCCT 59.803 47.826 0.00 0.00 0.00 3.69
93 94 3.526534 GCAAGTCAGTGAATACCTCTCC 58.473 50.000 0.00 0.00 0.00 3.71
94 95 3.196685 AGGCAAGTCAGTGAATACCTCTC 59.803 47.826 8.80 0.00 0.00 3.20
95 96 3.055530 CAGGCAAGTCAGTGAATACCTCT 60.056 47.826 11.11 0.00 0.00 3.69
96 97 3.265791 CAGGCAAGTCAGTGAATACCTC 58.734 50.000 11.11 0.00 0.00 3.85
97 98 2.616510 GCAGGCAAGTCAGTGAATACCT 60.617 50.000 8.80 8.80 0.00 3.08
98 99 1.740025 GCAGGCAAGTCAGTGAATACC 59.260 52.381 0.00 0.00 0.00 2.73
99 100 1.740025 GGCAGGCAAGTCAGTGAATAC 59.260 52.381 0.00 0.00 0.00 1.89
100 101 1.630369 AGGCAGGCAAGTCAGTGAATA 59.370 47.619 0.00 0.00 0.00 1.75
101 102 0.403271 AGGCAGGCAAGTCAGTGAAT 59.597 50.000 0.00 0.00 0.00 2.57
102 103 0.183492 AAGGCAGGCAAGTCAGTGAA 59.817 50.000 0.00 0.00 0.00 3.18
103 104 0.183492 AAAGGCAGGCAAGTCAGTGA 59.817 50.000 0.00 0.00 0.00 3.41
104 105 0.313043 CAAAGGCAGGCAAGTCAGTG 59.687 55.000 0.00 0.00 0.00 3.66
105 106 0.183492 TCAAAGGCAGGCAAGTCAGT 59.817 50.000 0.00 0.00 0.00 3.41
106 107 0.879765 CTCAAAGGCAGGCAAGTCAG 59.120 55.000 0.00 0.00 0.00 3.51
107 108 0.538057 CCTCAAAGGCAGGCAAGTCA 60.538 55.000 0.00 0.00 0.00 3.41
108 109 0.538287 ACCTCAAAGGCAGGCAAGTC 60.538 55.000 0.00 0.00 39.63 3.01
109 110 0.825010 CACCTCAAAGGCAGGCAAGT 60.825 55.000 0.00 0.00 39.63 3.16
110 111 1.962144 CACCTCAAAGGCAGGCAAG 59.038 57.895 0.00 0.00 39.63 4.01
111 112 2.202395 GCACCTCAAAGGCAGGCAA 61.202 57.895 0.00 0.00 39.63 4.52
112 113 2.598394 GCACCTCAAAGGCAGGCA 60.598 61.111 0.00 0.00 39.63 4.75
113 114 1.941999 GATGCACCTCAAAGGCAGGC 61.942 60.000 0.00 0.00 39.63 4.85
114 115 0.609957 TGATGCACCTCAAAGGCAGG 60.610 55.000 0.00 0.00 39.63 4.85
115 116 1.250328 TTGATGCACCTCAAAGGCAG 58.750 50.000 0.18 0.00 39.63 4.85
116 117 1.927487 ATTGATGCACCTCAAAGGCA 58.073 45.000 6.82 0.00 39.63 4.75
117 118 4.660789 ATAATTGATGCACCTCAAAGGC 57.339 40.909 6.82 0.00 39.63 4.35
118 119 4.807304 GCAATAATTGATGCACCTCAAAGG 59.193 41.667 6.82 0.00 42.12 3.11
119 120 5.412640 TGCAATAATTGATGCACCTCAAAG 58.587 37.500 13.91 0.00 46.87 2.77
120 121 5.402997 TGCAATAATTGATGCACCTCAAA 57.597 34.783 13.91 0.00 46.87 2.69
128 129 9.947669 GAAGATATAGGATGCAATAATTGATGC 57.052 33.333 9.60 9.60 42.86 3.91
135 136 9.658799 GCTAGTTGAAGATATAGGATGCAATAA 57.341 33.333 0.00 0.00 0.00 1.40
136 137 8.815912 TGCTAGTTGAAGATATAGGATGCAATA 58.184 33.333 0.00 0.00 0.00 1.90
137 138 7.683578 TGCTAGTTGAAGATATAGGATGCAAT 58.316 34.615 0.00 0.00 0.00 3.56
138 139 7.066307 TGCTAGTTGAAGATATAGGATGCAA 57.934 36.000 0.00 0.00 0.00 4.08
139 140 6.670695 TGCTAGTTGAAGATATAGGATGCA 57.329 37.500 0.00 0.00 0.00 3.96
140 141 5.580297 GCTGCTAGTTGAAGATATAGGATGC 59.420 44.000 0.00 0.00 0.00 3.91
141 142 5.804473 CGCTGCTAGTTGAAGATATAGGATG 59.196 44.000 0.00 0.00 0.00 3.51
142 143 5.712446 TCGCTGCTAGTTGAAGATATAGGAT 59.288 40.000 0.00 0.00 0.00 3.24
143 144 5.070685 TCGCTGCTAGTTGAAGATATAGGA 58.929 41.667 0.00 0.00 0.00 2.94
144 145 5.378292 TCGCTGCTAGTTGAAGATATAGG 57.622 43.478 0.00 0.00 0.00 2.57
145 146 7.087007 TCAATCGCTGCTAGTTGAAGATATAG 58.913 38.462 0.00 0.00 0.00 1.31
146 147 6.981722 TCAATCGCTGCTAGTTGAAGATATA 58.018 36.000 0.00 0.00 0.00 0.86
147 148 5.847304 TCAATCGCTGCTAGTTGAAGATAT 58.153 37.500 0.00 0.00 0.00 1.63
148 149 5.262588 TCAATCGCTGCTAGTTGAAGATA 57.737 39.130 0.00 0.00 0.00 1.98
149 150 4.128925 TCAATCGCTGCTAGTTGAAGAT 57.871 40.909 0.00 0.00 0.00 2.40
150 151 3.592898 TCAATCGCTGCTAGTTGAAGA 57.407 42.857 0.00 0.00 0.00 2.87
151 152 3.867493 TGATCAATCGCTGCTAGTTGAAG 59.133 43.478 12.74 0.00 34.62 3.02
152 153 3.860641 TGATCAATCGCTGCTAGTTGAA 58.139 40.909 12.74 0.00 34.62 2.69
153 154 3.525268 TGATCAATCGCTGCTAGTTGA 57.475 42.857 11.62 11.62 35.33 3.18
154 155 3.002042 CCTTGATCAATCGCTGCTAGTTG 59.998 47.826 8.96 0.31 0.00 3.16
155 156 3.201290 CCTTGATCAATCGCTGCTAGTT 58.799 45.455 8.96 0.00 0.00 2.24
156 157 2.831333 CCTTGATCAATCGCTGCTAGT 58.169 47.619 8.96 0.00 0.00 2.57
157 158 1.530293 GCCTTGATCAATCGCTGCTAG 59.470 52.381 8.96 0.00 0.00 3.42
158 159 1.134431 TGCCTTGATCAATCGCTGCTA 60.134 47.619 21.61 5.63 0.00 3.49
159 160 0.393402 TGCCTTGATCAATCGCTGCT 60.393 50.000 21.61 0.00 0.00 4.24
160 161 0.029035 CTGCCTTGATCAATCGCTGC 59.971 55.000 21.61 14.39 0.00 5.25
161 162 1.598132 CTCTGCCTTGATCAATCGCTG 59.402 52.381 21.61 20.71 0.00 5.18
162 163 1.209019 ACTCTGCCTTGATCAATCGCT 59.791 47.619 21.61 5.63 0.00 4.93
163 164 1.661341 ACTCTGCCTTGATCAATCGC 58.339 50.000 8.96 13.84 0.00 4.58
164 165 3.005554 ACAACTCTGCCTTGATCAATCG 58.994 45.455 8.96 3.48 0.00 3.34
165 166 4.005650 TCACAACTCTGCCTTGATCAATC 58.994 43.478 8.96 4.83 0.00 2.67
166 167 3.755378 GTCACAACTCTGCCTTGATCAAT 59.245 43.478 8.96 0.00 0.00 2.57
167 168 3.141398 GTCACAACTCTGCCTTGATCAA 58.859 45.455 8.12 8.12 0.00 2.57
168 169 2.771089 GTCACAACTCTGCCTTGATCA 58.229 47.619 0.00 0.00 0.00 2.92
169 170 1.728971 CGTCACAACTCTGCCTTGATC 59.271 52.381 0.00 0.00 0.00 2.92
170 171 1.800805 CGTCACAACTCTGCCTTGAT 58.199 50.000 0.00 0.00 0.00 2.57
171 172 0.880278 GCGTCACAACTCTGCCTTGA 60.880 55.000 0.00 0.00 0.00 3.02
172 173 1.159713 TGCGTCACAACTCTGCCTTG 61.160 55.000 0.00 0.00 0.00 3.61
173 174 1.146041 TGCGTCACAACTCTGCCTT 59.854 52.632 0.00 0.00 0.00 4.35
174 175 1.595382 GTGCGTCACAACTCTGCCT 60.595 57.895 5.30 0.00 34.08 4.75
175 176 1.160329 AAGTGCGTCACAACTCTGCC 61.160 55.000 11.58 0.00 36.74 4.85
176 177 0.657840 AAAGTGCGTCACAACTCTGC 59.342 50.000 11.58 0.00 36.74 4.26
177 178 1.933181 TCAAAGTGCGTCACAACTCTG 59.067 47.619 11.58 3.05 36.74 3.35
178 179 2.205074 CTCAAAGTGCGTCACAACTCT 58.795 47.619 11.58 0.00 36.74 3.24
179 180 1.261619 CCTCAAAGTGCGTCACAACTC 59.738 52.381 11.58 0.00 36.74 3.01
180 181 1.299541 CCTCAAAGTGCGTCACAACT 58.700 50.000 11.58 0.00 36.74 3.16
181 182 0.317020 GCCTCAAAGTGCGTCACAAC 60.317 55.000 11.58 0.00 36.74 3.32
182 183 1.444119 GGCCTCAAAGTGCGTCACAA 61.444 55.000 11.58 0.00 36.74 3.33
183 184 1.891919 GGCCTCAAAGTGCGTCACA 60.892 57.895 11.58 0.00 36.74 3.58
184 185 1.845809 CTGGCCTCAAAGTGCGTCAC 61.846 60.000 3.32 2.28 34.10 3.67
185 186 1.597854 CTGGCCTCAAAGTGCGTCA 60.598 57.895 3.32 0.00 0.00 4.35
186 187 2.328099 CCTGGCCTCAAAGTGCGTC 61.328 63.158 3.32 0.00 0.00 5.19
187 188 2.281761 CCTGGCCTCAAAGTGCGT 60.282 61.111 3.32 0.00 0.00 5.24
188 189 2.032528 TCCTGGCCTCAAAGTGCG 59.967 61.111 3.32 0.00 0.00 5.34
189 190 0.957888 GTCTCCTGGCCTCAAAGTGC 60.958 60.000 3.32 0.00 0.00 4.40
190 191 0.322008 GGTCTCCTGGCCTCAAAGTG 60.322 60.000 3.32 0.00 0.00 3.16
191 192 1.831652 CGGTCTCCTGGCCTCAAAGT 61.832 60.000 3.32 0.00 0.00 2.66
192 193 1.078848 CGGTCTCCTGGCCTCAAAG 60.079 63.158 3.32 0.00 0.00 2.77
193 194 3.068881 CGGTCTCCTGGCCTCAAA 58.931 61.111 3.32 0.00 0.00 2.69
194 195 3.706373 GCGGTCTCCTGGCCTCAA 61.706 66.667 3.32 0.00 0.00 3.02
201 202 3.775654 GAGTGGGGCGGTCTCCTG 61.776 72.222 0.00 0.00 0.00 3.86
204 205 4.436998 CACGAGTGGGGCGGTCTC 62.437 72.222 0.00 0.00 0.00 3.36
221 222 9.893305 GGGCACATTATTAACTTATTATCACAC 57.107 33.333 0.00 0.00 0.00 3.82
222 223 9.860650 AGGGCACATTATTAACTTATTATCACA 57.139 29.630 0.00 0.00 0.00 3.58
224 225 8.792633 GCAGGGCACATTATTAACTTATTATCA 58.207 33.333 0.00 0.00 0.00 2.15
225 226 9.014297 AGCAGGGCACATTATTAACTTATTATC 57.986 33.333 0.00 0.00 0.00 1.75
226 227 8.940397 AGCAGGGCACATTATTAACTTATTAT 57.060 30.769 0.00 0.00 0.00 1.28
227 228 8.629158 CAAGCAGGGCACATTATTAACTTATTA 58.371 33.333 0.00 0.00 0.00 0.98
228 229 7.341769 TCAAGCAGGGCACATTATTAACTTATT 59.658 33.333 0.00 0.00 0.00 1.40
229 230 6.833416 TCAAGCAGGGCACATTATTAACTTAT 59.167 34.615 0.00 0.00 0.00 1.73
230 231 6.184068 TCAAGCAGGGCACATTATTAACTTA 58.816 36.000 0.00 0.00 0.00 2.24
231 232 5.016173 TCAAGCAGGGCACATTATTAACTT 58.984 37.500 0.00 0.00 0.00 2.66
232 233 4.599041 TCAAGCAGGGCACATTATTAACT 58.401 39.130 0.00 0.00 0.00 2.24
233 234 4.981806 TCAAGCAGGGCACATTATTAAC 57.018 40.909 0.00 0.00 0.00 2.01
234 235 4.202141 GCATCAAGCAGGGCACATTATTAA 60.202 41.667 0.00 0.00 44.79 1.40
235 236 3.318839 GCATCAAGCAGGGCACATTATTA 59.681 43.478 0.00 0.00 44.79 0.98
236 237 2.101917 GCATCAAGCAGGGCACATTATT 59.898 45.455 0.00 0.00 44.79 1.40
237 238 1.684983 GCATCAAGCAGGGCACATTAT 59.315 47.619 0.00 0.00 44.79 1.28
238 239 1.105457 GCATCAAGCAGGGCACATTA 58.895 50.000 0.00 0.00 44.79 1.90
239 240 1.895238 GCATCAAGCAGGGCACATT 59.105 52.632 0.00 0.00 44.79 2.71
240 241 3.612251 GCATCAAGCAGGGCACAT 58.388 55.556 0.00 0.00 44.79 3.21
249 250 3.003068 CCTACTGTATGCAAGCATCAAGC 59.997 47.826 11.32 1.93 46.19 4.01
250 251 4.034858 CACCTACTGTATGCAAGCATCAAG 59.965 45.833 11.32 12.15 37.82 3.02
251 252 3.940852 CACCTACTGTATGCAAGCATCAA 59.059 43.478 11.32 0.30 37.82 2.57
252 253 3.055167 ACACCTACTGTATGCAAGCATCA 60.055 43.478 11.32 8.56 37.82 3.07
253 254 3.535561 ACACCTACTGTATGCAAGCATC 58.464 45.455 11.32 4.42 37.82 3.91
254 255 3.535561 GACACCTACTGTATGCAAGCAT 58.464 45.455 12.66 12.66 40.19 3.79
255 256 2.673893 CGACACCTACTGTATGCAAGCA 60.674 50.000 0.00 0.00 31.03 3.91
256 257 1.927174 CGACACCTACTGTATGCAAGC 59.073 52.381 0.00 0.00 31.03 4.01
257 258 3.503827 TCGACACCTACTGTATGCAAG 57.496 47.619 0.00 0.00 31.03 4.01
258 259 3.445805 TGATCGACACCTACTGTATGCAA 59.554 43.478 0.00 0.00 31.03 4.08
259 260 3.020984 TGATCGACACCTACTGTATGCA 58.979 45.455 0.00 0.00 31.03 3.96
260 261 3.710326 TGATCGACACCTACTGTATGC 57.290 47.619 0.00 0.00 31.03 3.14
261 262 6.811665 TCTTTTTGATCGACACCTACTGTATG 59.188 38.462 0.00 0.00 31.03 2.39
262 263 6.812160 GTCTTTTTGATCGACACCTACTGTAT 59.188 38.462 0.00 0.00 31.03 2.29
263 264 6.015688 AGTCTTTTTGATCGACACCTACTGTA 60.016 38.462 0.00 0.00 31.03 2.74
264 265 4.989168 GTCTTTTTGATCGACACCTACTGT 59.011 41.667 0.00 0.00 34.96 3.55
265 266 5.230942 AGTCTTTTTGATCGACACCTACTG 58.769 41.667 0.00 0.00 0.00 2.74
266 267 5.470047 AGTCTTTTTGATCGACACCTACT 57.530 39.130 0.00 0.00 0.00 2.57
267 268 4.323868 CGAGTCTTTTTGATCGACACCTAC 59.676 45.833 0.00 0.00 37.35 3.18
268 269 4.022589 ACGAGTCTTTTTGATCGACACCTA 60.023 41.667 0.00 0.00 38.50 3.08
269 270 3.243771 ACGAGTCTTTTTGATCGACACCT 60.244 43.478 0.00 0.00 38.50 4.00
270 271 3.057734 ACGAGTCTTTTTGATCGACACC 58.942 45.455 0.00 0.00 38.50 4.16
271 272 3.489785 ACACGAGTCTTTTTGATCGACAC 59.510 43.478 0.00 0.00 38.50 3.67
272 273 3.713288 ACACGAGTCTTTTTGATCGACA 58.287 40.909 0.00 0.00 38.50 4.35
273 274 5.571741 TCATACACGAGTCTTTTTGATCGAC 59.428 40.000 0.00 0.00 38.50 4.20
274 275 5.705902 TCATACACGAGTCTTTTTGATCGA 58.294 37.500 0.00 0.00 38.50 3.59
275 276 6.575083 ATCATACACGAGTCTTTTTGATCG 57.425 37.500 0.00 0.00 40.86 3.69
276 277 9.302345 TCTTATCATACACGAGTCTTTTTGATC 57.698 33.333 0.00 0.00 0.00 2.92
277 278 9.653287 TTCTTATCATACACGAGTCTTTTTGAT 57.347 29.630 0.00 0.00 0.00 2.57
278 279 9.653287 ATTCTTATCATACACGAGTCTTTTTGA 57.347 29.630 0.00 0.00 0.00 2.69
294 295 8.522830 CGGGGCACATTATTAAATTCTTATCAT 58.477 33.333 0.00 0.00 0.00 2.45
295 296 7.523052 GCGGGGCACATTATTAAATTCTTATCA 60.523 37.037 0.00 0.00 0.00 2.15
296 297 6.806739 GCGGGGCACATTATTAAATTCTTATC 59.193 38.462 0.00 0.00 0.00 1.75
297 298 6.493458 AGCGGGGCACATTATTAAATTCTTAT 59.507 34.615 0.00 0.00 0.00 1.73
298 299 5.830991 AGCGGGGCACATTATTAAATTCTTA 59.169 36.000 0.00 0.00 0.00 2.10
299 300 4.649218 AGCGGGGCACATTATTAAATTCTT 59.351 37.500 0.00 0.00 0.00 2.52
300 301 4.215109 AGCGGGGCACATTATTAAATTCT 58.785 39.130 0.00 0.00 0.00 2.40
301 302 4.584327 AGCGGGGCACATTATTAAATTC 57.416 40.909 0.00 0.00 0.00 2.17
302 303 4.404073 TCAAGCGGGGCACATTATTAAATT 59.596 37.500 0.00 0.00 0.00 1.82
303 304 3.957497 TCAAGCGGGGCACATTATTAAAT 59.043 39.130 0.00 0.00 0.00 1.40
304 305 3.357203 TCAAGCGGGGCACATTATTAAA 58.643 40.909 0.00 0.00 0.00 1.52
305 306 3.006112 TCAAGCGGGGCACATTATTAA 57.994 42.857 0.00 0.00 0.00 1.40
306 307 2.719531 TCAAGCGGGGCACATTATTA 57.280 45.000 0.00 0.00 0.00 0.98
307 308 1.682854 CATCAAGCGGGGCACATTATT 59.317 47.619 0.00 0.00 0.00 1.40
308 309 1.321474 CATCAAGCGGGGCACATTAT 58.679 50.000 0.00 0.00 0.00 1.28
309 310 0.751277 CCATCAAGCGGGGCACATTA 60.751 55.000 0.00 0.00 0.00 1.90
310 311 2.053865 CCATCAAGCGGGGCACATT 61.054 57.895 0.00 0.00 0.00 2.71
311 312 2.440796 CCATCAAGCGGGGCACAT 60.441 61.111 0.00 0.00 0.00 3.21
312 313 3.965258 ACCATCAAGCGGGGCACA 61.965 61.111 0.00 0.00 0.00 4.57
313 314 2.813226 TACACCATCAAGCGGGGCAC 62.813 60.000 0.00 0.00 0.00 5.01
314 315 1.920734 ATACACCATCAAGCGGGGCA 61.921 55.000 0.00 0.00 0.00 5.36
315 316 0.107831 TATACACCATCAAGCGGGGC 59.892 55.000 0.00 0.00 0.00 5.80
316 317 1.140052 TGTATACACCATCAAGCGGGG 59.860 52.381 0.08 0.00 0.00 5.73
317 318 2.158957 ACTGTATACACCATCAAGCGGG 60.159 50.000 0.08 0.00 0.00 6.13
318 319 2.866156 CACTGTATACACCATCAAGCGG 59.134 50.000 0.08 0.00 0.00 5.52
319 320 3.306973 CACACTGTATACACCATCAAGCG 59.693 47.826 0.08 0.00 0.00 4.68
320 321 4.253685 ACACACTGTATACACCATCAAGC 58.746 43.478 0.08 0.00 0.00 4.01
321 322 4.562789 CGACACACTGTATACACCATCAAG 59.437 45.833 0.08 0.00 0.00 3.02
322 323 4.218852 TCGACACACTGTATACACCATCAA 59.781 41.667 0.08 0.00 0.00 2.57
323 324 3.759618 TCGACACACTGTATACACCATCA 59.240 43.478 0.08 0.00 0.00 3.07
324 325 4.365899 TCGACACACTGTATACACCATC 57.634 45.455 0.08 0.00 0.00 3.51
325 326 4.401202 TGATCGACACACTGTATACACCAT 59.599 41.667 0.08 0.00 0.00 3.55
326 327 3.759618 TGATCGACACACTGTATACACCA 59.240 43.478 0.08 0.00 0.00 4.17
327 328 4.365899 TGATCGACACACTGTATACACC 57.634 45.455 0.08 0.00 0.00 4.16
328 329 6.699895 TTTTGATCGACACACTGTATACAC 57.300 37.500 0.08 0.00 0.00 2.90
329 330 7.115805 GTCTTTTTGATCGACACACTGTATACA 59.884 37.037 5.25 5.25 0.00 2.29
330 331 7.328737 AGTCTTTTTGATCGACACACTGTATAC 59.671 37.037 0.00 0.00 0.00 1.47
331 332 7.375834 AGTCTTTTTGATCGACACACTGTATA 58.624 34.615 0.00 0.00 0.00 1.47
332 333 6.223852 AGTCTTTTTGATCGACACACTGTAT 58.776 36.000 0.00 0.00 0.00 2.29
333 334 5.597806 AGTCTTTTTGATCGACACACTGTA 58.402 37.500 0.00 0.00 0.00 2.74
334 335 4.442706 AGTCTTTTTGATCGACACACTGT 58.557 39.130 0.00 0.00 0.00 3.55
335 336 4.375405 CGAGTCTTTTTGATCGACACACTG 60.375 45.833 0.00 0.00 37.35 3.66
336 337 3.736252 CGAGTCTTTTTGATCGACACACT 59.264 43.478 0.00 0.00 37.35 3.55
337 338 3.489785 ACGAGTCTTTTTGATCGACACAC 59.510 43.478 0.00 0.00 38.50 3.82
338 339 3.713288 ACGAGTCTTTTTGATCGACACA 58.287 40.909 0.00 0.00 38.50 3.72
339 340 4.710528 AACGAGTCTTTTTGATCGACAC 57.289 40.909 0.00 0.00 38.50 3.67
340 341 4.569162 ACAAACGAGTCTTTTTGATCGACA 59.431 37.500 16.78 0.00 38.50 4.35
341 342 4.898488 CACAAACGAGTCTTTTTGATCGAC 59.102 41.667 16.78 0.00 38.50 4.20
342 343 4.806775 TCACAAACGAGTCTTTTTGATCGA 59.193 37.500 16.78 0.00 38.50 3.59
343 344 5.078153 TCACAAACGAGTCTTTTTGATCG 57.922 39.130 16.78 0.00 40.86 3.69
344 345 9.445786 TTTTATCACAAACGAGTCTTTTTGATC 57.554 29.630 16.78 0.00 36.41 2.92
345 346 9.796120 TTTTTATCACAAACGAGTCTTTTTGAT 57.204 25.926 16.78 16.56 36.41 2.57
346 347 9.796120 ATTTTTATCACAAACGAGTCTTTTTGA 57.204 25.926 16.78 12.34 36.41 2.69
363 364 9.522804 GCCGGACACATTATTAAATTTTTATCA 57.477 29.630 5.05 0.00 0.00 2.15
364 365 9.744468 AGCCGGACACATTATTAAATTTTTATC 57.256 29.630 5.05 0.00 0.00 1.75
366 367 9.360093 CAAGCCGGACACATTATTAAATTTTTA 57.640 29.630 5.05 0.00 0.00 1.52
367 368 8.091449 TCAAGCCGGACACATTATTAAATTTTT 58.909 29.630 5.05 0.00 0.00 1.94
368 369 7.607250 TCAAGCCGGACACATTATTAAATTTT 58.393 30.769 5.05 0.00 0.00 1.82
369 370 7.164230 TCAAGCCGGACACATTATTAAATTT 57.836 32.000 5.05 0.00 0.00 1.82
370 371 6.767524 TCAAGCCGGACACATTATTAAATT 57.232 33.333 5.05 0.00 0.00 1.82
371 372 6.735694 GCATCAAGCCGGACACATTATTAAAT 60.736 38.462 5.05 0.00 37.23 1.40
372 373 5.449862 GCATCAAGCCGGACACATTATTAAA 60.450 40.000 5.05 0.00 37.23 1.52
373 374 4.036262 GCATCAAGCCGGACACATTATTAA 59.964 41.667 5.05 0.00 37.23 1.40
374 375 3.563808 GCATCAAGCCGGACACATTATTA 59.436 43.478 5.05 0.00 37.23 0.98
375 376 2.358898 GCATCAAGCCGGACACATTATT 59.641 45.455 5.05 0.00 37.23 1.40
376 377 1.949525 GCATCAAGCCGGACACATTAT 59.050 47.619 5.05 0.00 37.23 1.28
377 378 1.378531 GCATCAAGCCGGACACATTA 58.621 50.000 5.05 0.00 37.23 1.90
378 379 2.183409 GCATCAAGCCGGACACATT 58.817 52.632 5.05 0.00 37.23 2.71
379 380 3.909662 GCATCAAGCCGGACACAT 58.090 55.556 5.05 0.00 37.23 3.21
388 389 3.318017 CCTACGGTATACAGCATCAAGC 58.682 50.000 5.01 0.00 46.19 4.01
389 390 3.318017 GCCTACGGTATACAGCATCAAG 58.682 50.000 5.01 0.00 0.00 3.02
390 391 2.036733 GGCCTACGGTATACAGCATCAA 59.963 50.000 5.01 0.00 0.00 2.57
391 392 1.616865 GGCCTACGGTATACAGCATCA 59.383 52.381 5.01 0.00 0.00 3.07
392 393 1.616865 TGGCCTACGGTATACAGCATC 59.383 52.381 3.32 0.00 0.00 3.91
393 394 1.712056 TGGCCTACGGTATACAGCAT 58.288 50.000 3.32 0.00 0.00 3.79
394 395 1.487300 TTGGCCTACGGTATACAGCA 58.513 50.000 3.32 0.00 0.00 4.41
395 396 2.833631 ATTGGCCTACGGTATACAGC 57.166 50.000 3.32 0.00 0.00 4.40
396 397 6.204108 CCTTTTTATTGGCCTACGGTATACAG 59.796 42.308 3.32 2.99 0.00 2.74
397 398 6.056884 CCTTTTTATTGGCCTACGGTATACA 58.943 40.000 3.32 0.00 0.00 2.29
398 399 6.057533 ACCTTTTTATTGGCCTACGGTATAC 58.942 40.000 3.32 0.00 0.00 1.47
399 400 6.251255 ACCTTTTTATTGGCCTACGGTATA 57.749 37.500 3.32 0.00 0.00 1.47
400 401 5.120054 ACCTTTTTATTGGCCTACGGTAT 57.880 39.130 3.32 0.00 0.00 2.73
401 402 4.573021 ACCTTTTTATTGGCCTACGGTA 57.427 40.909 3.32 0.00 0.00 4.02
402 403 3.444792 ACCTTTTTATTGGCCTACGGT 57.555 42.857 3.32 0.00 0.00 4.83
403 404 3.759618 TCAACCTTTTTATTGGCCTACGG 59.240 43.478 3.32 0.00 0.00 4.02
404 405 4.142469 CCTCAACCTTTTTATTGGCCTACG 60.142 45.833 3.32 0.00 0.00 3.51
405 406 5.014202 TCCTCAACCTTTTTATTGGCCTAC 58.986 41.667 3.32 0.00 0.00 3.18
406 407 5.263872 TCCTCAACCTTTTTATTGGCCTA 57.736 39.130 3.32 0.00 0.00 3.93
407 408 4.126520 TCCTCAACCTTTTTATTGGCCT 57.873 40.909 3.32 0.00 0.00 5.19
408 409 4.882842 TTCCTCAACCTTTTTATTGGCC 57.117 40.909 0.00 0.00 0.00 5.36
409 410 5.869344 GTGATTCCTCAACCTTTTTATTGGC 59.131 40.000 0.00 0.00 31.85 4.52
410 411 6.991938 TGTGATTCCTCAACCTTTTTATTGG 58.008 36.000 0.00 0.00 31.85 3.16
438 439 7.009999 GCTTGTCATATGTTGTGTTCACAAAAA 59.990 33.333 17.98 11.10 0.00 1.94
439 440 6.475076 GCTTGTCATATGTTGTGTTCACAAAA 59.525 34.615 17.98 14.20 0.00 2.44
440 441 5.976534 GCTTGTCATATGTTGTGTTCACAAA 59.023 36.000 17.98 10.25 0.00 2.83
441 442 5.067023 TGCTTGTCATATGTTGTGTTCACAA 59.933 36.000 13.36 13.36 0.00 3.33
442 443 4.578105 TGCTTGTCATATGTTGTGTTCACA 59.422 37.500 1.90 1.23 0.00 3.58
443 444 5.107109 TGCTTGTCATATGTTGTGTTCAC 57.893 39.130 1.90 0.00 0.00 3.18
444 445 5.335819 CCATGCTTGTCATATGTTGTGTTCA 60.336 40.000 1.90 0.00 33.19 3.18
445 446 5.097529 CCATGCTTGTCATATGTTGTGTTC 58.902 41.667 1.90 0.00 33.19 3.18
446 447 4.082081 CCCATGCTTGTCATATGTTGTGTT 60.082 41.667 1.90 0.00 33.19 3.32
447 448 3.444742 CCCATGCTTGTCATATGTTGTGT 59.555 43.478 1.90 0.00 33.19 3.72
448 449 3.735820 GCCCATGCTTGTCATATGTTGTG 60.736 47.826 1.90 0.00 33.19 3.33
449 450 2.428171 GCCCATGCTTGTCATATGTTGT 59.572 45.455 1.90 0.00 33.19 3.32
450 451 2.427812 TGCCCATGCTTGTCATATGTTG 59.572 45.455 1.90 0.00 38.71 3.33
451 452 2.737544 TGCCCATGCTTGTCATATGTT 58.262 42.857 1.90 0.00 38.71 2.71
452 453 2.440517 TGCCCATGCTTGTCATATGT 57.559 45.000 1.90 0.00 38.71 2.29
453 454 2.953648 TCTTGCCCATGCTTGTCATATG 59.046 45.455 0.00 0.00 38.71 1.78
454 455 3.301794 TCTTGCCCATGCTTGTCATAT 57.698 42.857 0.00 0.00 38.71 1.78
455 456 2.804986 TCTTGCCCATGCTTGTCATA 57.195 45.000 0.00 0.00 38.71 2.15
456 457 2.154567 ATCTTGCCCATGCTTGTCAT 57.845 45.000 0.00 0.00 38.71 3.06
457 458 2.025981 AGTATCTTGCCCATGCTTGTCA 60.026 45.455 0.00 0.00 38.71 3.58
458 459 2.648059 AGTATCTTGCCCATGCTTGTC 58.352 47.619 0.00 0.00 38.71 3.18
459 460 2.814805 AGTATCTTGCCCATGCTTGT 57.185 45.000 0.00 0.00 38.71 3.16
460 461 4.082081 TCAAAAGTATCTTGCCCATGCTTG 60.082 41.667 0.00 0.00 38.71 4.01
461 462 4.082026 GTCAAAAGTATCTTGCCCATGCTT 60.082 41.667 0.00 0.00 38.71 3.91
462 463 3.445096 GTCAAAAGTATCTTGCCCATGCT 59.555 43.478 0.00 0.00 38.71 3.79
463 464 3.429410 GGTCAAAAGTATCTTGCCCATGC 60.429 47.826 0.00 0.00 38.26 4.06
464 465 3.763360 TGGTCAAAAGTATCTTGCCCATG 59.237 43.478 0.00 0.00 27.21 3.66
465 466 3.763897 GTGGTCAAAAGTATCTTGCCCAT 59.236 43.478 0.00 0.00 34.56 4.00
466 467 3.153919 GTGGTCAAAAGTATCTTGCCCA 58.846 45.455 0.00 0.00 29.65 5.36
467 468 3.421844 AGTGGTCAAAAGTATCTTGCCC 58.578 45.455 0.00 0.00 0.00 5.36
468 469 5.453567 AAAGTGGTCAAAAGTATCTTGCC 57.546 39.130 0.00 0.00 0.00 4.52
469 470 5.009610 TGGAAAGTGGTCAAAAGTATCTTGC 59.990 40.000 0.00 0.00 0.00 4.01
470 471 6.633500 TGGAAAGTGGTCAAAAGTATCTTG 57.367 37.500 0.00 0.00 0.00 3.02
471 472 7.004086 TCATGGAAAGTGGTCAAAAGTATCTT 58.996 34.615 0.00 0.00 0.00 2.40
472 473 6.542821 TCATGGAAAGTGGTCAAAAGTATCT 58.457 36.000 0.00 0.00 0.00 1.98
473 474 6.817765 TCATGGAAAGTGGTCAAAAGTATC 57.182 37.500 0.00 0.00 0.00 2.24
474 475 6.947733 TCATCATGGAAAGTGGTCAAAAGTAT 59.052 34.615 0.00 0.00 0.00 2.12
475 476 6.303054 TCATCATGGAAAGTGGTCAAAAGTA 58.697 36.000 0.00 0.00 0.00 2.24
476 477 5.139727 TCATCATGGAAAGTGGTCAAAAGT 58.860 37.500 0.00 0.00 0.00 2.66
477 478 5.710513 TCATCATGGAAAGTGGTCAAAAG 57.289 39.130 0.00 0.00 0.00 2.27
478 479 6.028146 CATCATCATGGAAAGTGGTCAAAA 57.972 37.500 0.00 0.00 0.00 2.44
479 480 5.648178 CATCATCATGGAAAGTGGTCAAA 57.352 39.130 0.00 0.00 0.00 2.69
492 493 5.648178 TGAGAAAACCAACCATCATCATG 57.352 39.130 0.00 0.00 0.00 3.07
493 494 5.718130 ACATGAGAAAACCAACCATCATCAT 59.282 36.000 0.00 0.00 0.00 2.45
494 495 5.047872 CACATGAGAAAACCAACCATCATCA 60.048 40.000 0.00 0.00 0.00 3.07
495 496 5.047802 ACACATGAGAAAACCAACCATCATC 60.048 40.000 0.00 0.00 0.00 2.92
496 497 4.834496 ACACATGAGAAAACCAACCATCAT 59.166 37.500 0.00 0.00 0.00 2.45
497 498 4.214310 ACACATGAGAAAACCAACCATCA 58.786 39.130 0.00 0.00 0.00 3.07
523 524 2.297701 GGAGTGGTTGAAGCAACAGAA 58.702 47.619 11.83 0.00 45.11 3.02
556 599 2.018544 CGACGGTTTGTTTGCAGGA 58.981 52.632 0.00 0.00 0.00 3.86
567 614 1.664965 GAAGTGAGCAGCGACGGTT 60.665 57.895 0.00 0.00 0.00 4.44
596 643 0.801251 GAATAGAGATGCGGGCATGC 59.199 55.000 9.90 9.90 36.70 4.06
597 644 1.002888 AGGAATAGAGATGCGGGCATG 59.997 52.381 11.44 0.00 36.70 4.06
598 645 1.002888 CAGGAATAGAGATGCGGGCAT 59.997 52.381 5.73 5.73 39.69 4.40
599 646 0.394192 CAGGAATAGAGATGCGGGCA 59.606 55.000 0.00 0.00 0.00 5.36
600 647 0.321122 CCAGGAATAGAGATGCGGGC 60.321 60.000 0.00 0.00 0.00 6.13
601 648 1.051812 ACCAGGAATAGAGATGCGGG 58.948 55.000 0.00 0.00 0.00 6.13
602 649 1.270518 CCACCAGGAATAGAGATGCGG 60.271 57.143 0.00 0.00 36.89 5.69
603 650 1.688735 TCCACCAGGAATAGAGATGCG 59.311 52.381 0.00 0.00 42.23 4.73
618 665 4.722700 AGGCACCGCACATCCACC 62.723 66.667 0.00 0.00 0.00 4.61
629 676 0.804989 CGAAGGAAATGACAGGCACC 59.195 55.000 0.00 0.00 0.00 5.01
632 679 0.729690 GCTCGAAGGAAATGACAGGC 59.270 55.000 0.00 0.00 0.00 4.85
635 682 1.019278 GGCGCTCGAAGGAAATGACA 61.019 55.000 7.64 0.00 0.00 3.58
636 683 1.019278 TGGCGCTCGAAGGAAATGAC 61.019 55.000 7.64 0.00 0.00 3.06
637 684 0.740868 CTGGCGCTCGAAGGAAATGA 60.741 55.000 7.64 0.00 0.00 2.57
638 685 1.717937 CTGGCGCTCGAAGGAAATG 59.282 57.895 7.64 0.00 0.00 2.32
639 686 2.109126 GCTGGCGCTCGAAGGAAAT 61.109 57.895 7.64 0.00 0.00 2.17
640 687 2.742372 GCTGGCGCTCGAAGGAAA 60.742 61.111 7.64 0.00 0.00 3.13
641 688 3.695606 AGCTGGCGCTCGAAGGAA 61.696 61.111 7.64 0.00 45.15 3.36
712 765 2.754658 CGCAGGGTCCGTCCTACT 60.755 66.667 0.00 0.00 34.92 2.57
734 787 2.742372 GTGGAATGCAGTCGCGGT 60.742 61.111 6.13 0.00 42.97 5.68
782 838 2.093658 TCCCCTATCTTCTCGCAACAAC 60.094 50.000 0.00 0.00 0.00 3.32
783 839 2.168521 CTCCCCTATCTTCTCGCAACAA 59.831 50.000 0.00 0.00 0.00 2.83
784 840 1.757118 CTCCCCTATCTTCTCGCAACA 59.243 52.381 0.00 0.00 0.00 3.33
786 842 1.757118 CACTCCCCTATCTTCTCGCAA 59.243 52.381 0.00 0.00 0.00 4.85
787 843 1.403814 CACTCCCCTATCTTCTCGCA 58.596 55.000 0.00 0.00 0.00 5.10
789 845 2.366640 TCCACTCCCCTATCTTCTCG 57.633 55.000 0.00 0.00 0.00 4.04
792 848 3.682999 GCAGTTTCCACTCCCCTATCTTC 60.683 52.174 0.00 0.00 0.00 2.87
793 849 2.239907 GCAGTTTCCACTCCCCTATCTT 59.760 50.000 0.00 0.00 0.00 2.40
794 850 1.840635 GCAGTTTCCACTCCCCTATCT 59.159 52.381 0.00 0.00 0.00 1.98
795 851 1.559682 TGCAGTTTCCACTCCCCTATC 59.440 52.381 0.00 0.00 0.00 2.08
796 852 1.668826 TGCAGTTTCCACTCCCCTAT 58.331 50.000 0.00 0.00 0.00 2.57
845 918 4.275689 ACTCAACAATCGAACATTCAGCAA 59.724 37.500 0.00 0.00 0.00 3.91
907 1041 1.011595 TCCCTCTCCAGGCTTAGAGT 58.988 55.000 17.91 0.00 38.72 3.24
921 1056 2.897969 TGGAACTACACTGAACTCCCTC 59.102 50.000 0.00 0.00 0.00 4.30
925 1060 4.511826 CCAACTTGGAACTACACTGAACTC 59.488 45.833 0.92 0.00 40.96 3.01
1008 1162 2.726351 GGAGGTCCTGCTCCTTCCG 61.726 68.421 2.51 0.00 36.84 4.30
1019 1173 1.069935 GCCGCAGATTAGGAGGTCC 59.930 63.158 0.00 0.00 0.00 4.46
1069 1226 2.048127 GTGTGAGGAGACGGTGCC 60.048 66.667 0.00 0.00 0.00 5.01
1107 1267 0.179062 AGCCGACATGATCCTTGAGC 60.179 55.000 0.00 1.08 0.00 4.26
1120 1280 2.574399 GAGTGTCCCAGAGCCGAC 59.426 66.667 0.00 0.00 0.00 4.79
1335 1501 7.705325 CAGTCAATTAGTATGGTGTAGGTGTAC 59.295 40.741 0.00 0.00 0.00 2.90
1346 1512 3.003068 GCAGCTGCAGTCAATTAGTATGG 59.997 47.826 33.36 0.00 41.59 2.74
1442 1608 2.086869 TGAATAAGCTGCTGAAGGTGC 58.913 47.619 1.35 0.00 36.51 5.01
1743 1913 2.220586 TCCCCACATCAGGCACGAA 61.221 57.895 0.00 0.00 0.00 3.85
2169 2340 7.770433 CAGTATGTTGAAACAATGGAGATAGGA 59.230 37.037 0.00 0.00 43.03 2.94
2297 2468 3.041211 TCTGCAATACCCAGCTATCACT 58.959 45.455 0.00 0.00 0.00 3.41
2491 4271 3.218453 TCAATTCCTTGGCTTTTCGACA 58.782 40.909 0.00 0.00 32.95 4.35
2493 4273 3.443681 GGATCAATTCCTTGGCTTTTCGA 59.556 43.478 0.00 0.00 41.78 3.71
2494 4274 3.193267 TGGATCAATTCCTTGGCTTTTCG 59.807 43.478 0.00 0.00 45.68 3.46
2541 4485 1.152819 CCCTGGATCATGCACCTGG 60.153 63.158 19.30 19.30 42.40 4.45
2581 4550 9.912634 TCAGTAATCAATTCTTTGGCTTTTAAG 57.087 29.630 0.00 0.00 33.44 1.85
2584 4553 9.783081 ATTTCAGTAATCAATTCTTTGGCTTTT 57.217 25.926 0.00 0.00 33.44 2.27
2585 4554 9.211485 CATTTCAGTAATCAATTCTTTGGCTTT 57.789 29.630 0.00 0.00 33.44 3.51
2586 4555 8.587608 TCATTTCAGTAATCAATTCTTTGGCTT 58.412 29.630 0.00 0.00 33.44 4.35
2587 4556 8.125978 TCATTTCAGTAATCAATTCTTTGGCT 57.874 30.769 0.00 0.00 33.44 4.75
2588 4557 8.761575 TTCATTTCAGTAATCAATTCTTTGGC 57.238 30.769 0.00 0.00 33.44 4.52
2857 4832 0.687354 AACACTCTCGCCCAACATCT 59.313 50.000 0.00 0.00 0.00 2.90
3084 5082 9.131791 GTTCCATCACTTATATTACATTGGGTT 57.868 33.333 0.00 0.00 0.00 4.11
3087 5085 9.559732 TCAGTTCCATCACTTATATTACATTGG 57.440 33.333 0.00 0.00 0.00 3.16
3100 5098 8.906867 CACCATTATATTTTCAGTTCCATCACT 58.093 33.333 0.00 0.00 0.00 3.41
3253 5390 0.376152 CGTATAGACAGCACCGTCGT 59.624 55.000 0.00 0.00 40.98 4.34
3272 5410 0.534203 TCTGTTTCCGAACCTGTGGC 60.534 55.000 0.00 0.00 34.80 5.01
3467 6283 8.573885 CATGTTGCTCAATTCTATGGTAATCAT 58.426 33.333 0.00 0.00 39.78 2.45
3602 6420 1.890876 CCATCTCACACCGGACAAAA 58.109 50.000 9.46 0.00 0.00 2.44
3606 6424 0.535335 TAAGCCATCTCACACCGGAC 59.465 55.000 9.46 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.