Multiple sequence alignment - TraesCS6D01G089400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G089400 chr6D 100.000 2645 0 0 1 2645 55311241 55313885 0.000000e+00 4885
1 TraesCS6D01G089400 chr6D 83.728 1733 218 42 575 2288 55403375 55405062 0.000000e+00 1580
2 TraesCS6D01G089400 chr6D 80.107 1307 239 18 995 2289 48081819 48083116 0.000000e+00 953
3 TraesCS6D01G089400 chr6D 79.908 1309 244 16 995 2292 48468838 48467538 0.000000e+00 942
4 TraesCS6D01G089400 chr6D 80.196 1222 229 11 1079 2292 48460288 48459072 0.000000e+00 904
5 TraesCS6D01G089400 chr6D 78.878 303 48 12 2340 2631 46910911 46910614 9.660000e-45 191
6 TraesCS6D01G089400 chr6D 75.652 345 68 12 2291 2629 55177810 55178144 9.800000e-35 158
7 TraesCS6D01G089400 chr6D 90.566 106 10 0 2340 2445 55318239 55318344 9.870000e-30 141
8 TraesCS6D01G089400 chr6A 92.734 1335 90 6 956 2288 69132516 69133845 0.000000e+00 1921
9 TraesCS6D01G089400 chr6A 80.945 1312 226 19 995 2292 67055486 67054185 0.000000e+00 1016
10 TraesCS6D01G089400 chr6A 79.891 1283 229 19 1020 2292 66995643 66994380 0.000000e+00 913
11 TraesCS6D01G089400 chr6A 92.718 412 23 3 1 406 69125221 69125631 2.930000e-164 588
12 TraesCS6D01G089400 chr6A 76.589 299 53 14 2336 2629 69059696 69059982 5.900000e-32 148
13 TraesCS6D01G089400 chr6B 83.611 1739 224 36 575 2288 125404526 125406228 0.000000e+00 1576
14 TraesCS6D01G089400 chr6B 79.719 1282 242 16 1020 2292 123206247 123204975 0.000000e+00 911
15 TraesCS6D01G089400 chr6B 86.809 705 47 22 1 672 125360564 125361255 0.000000e+00 745
16 TraesCS6D01G089400 chr6B 87.838 222 25 2 698 918 125362949 125363169 2.610000e-65 259
17 TraesCS6D01G089400 chr6B 79.333 300 33 15 2357 2631 124991854 124992149 1.620000e-42 183
18 TraesCS6D01G089400 chr6B 90.435 115 9 2 2340 2453 125384439 125384552 1.640000e-32 150
19 TraesCS6D01G089400 chr6B 87.903 124 13 1 2324 2445 125341414 125341537 7.630000e-31 145
20 TraesCS6D01G089400 chr6B 74.780 341 71 10 2291 2629 125352932 125353259 3.550000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G089400 chr6D 55311241 55313885 2644 False 4885 4885 100.0000 1 2645 1 chr6D.!!$F3 2644
1 TraesCS6D01G089400 chr6D 55403375 55405062 1687 False 1580 1580 83.7280 575 2288 1 chr6D.!!$F5 1713
2 TraesCS6D01G089400 chr6D 48081819 48083116 1297 False 953 953 80.1070 995 2289 1 chr6D.!!$F1 1294
3 TraesCS6D01G089400 chr6D 48467538 48468838 1300 True 942 942 79.9080 995 2292 1 chr6D.!!$R3 1297
4 TraesCS6D01G089400 chr6D 48459072 48460288 1216 True 904 904 80.1960 1079 2292 1 chr6D.!!$R2 1213
5 TraesCS6D01G089400 chr6A 69132516 69133845 1329 False 1921 1921 92.7340 956 2288 1 chr6A.!!$F3 1332
6 TraesCS6D01G089400 chr6A 67054185 67055486 1301 True 1016 1016 80.9450 995 2292 1 chr6A.!!$R2 1297
7 TraesCS6D01G089400 chr6A 66994380 66995643 1263 True 913 913 79.8910 1020 2292 1 chr6A.!!$R1 1272
8 TraesCS6D01G089400 chr6B 125404526 125406228 1702 False 1576 1576 83.6110 575 2288 1 chr6B.!!$F5 1713
9 TraesCS6D01G089400 chr6B 123204975 123206247 1272 True 911 911 79.7190 1020 2292 1 chr6B.!!$R1 1272
10 TraesCS6D01G089400 chr6B 125360564 125363169 2605 False 502 745 87.3235 1 918 2 chr6B.!!$F6 917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 527 0.113776 TACTTCGACCACTCCCCACT 59.886 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2342 4097 0.550914 TTGCACCAACTTCACCTCCT 59.449 50.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.657354 CCGAAATGGTTGATGTCAAGATATAGA 59.343 37.037 0.00 0.00 36.39 1.98
73 74 3.360867 TCAGGAGAGAAGCAACCTAGAG 58.639 50.000 0.00 0.00 0.00 2.43
91 92 3.554934 AGAGGTGTTTGAAGTGCATTCA 58.445 40.909 7.27 7.27 46.31 2.57
127 128 1.169661 TCACGGGTTGCCACATTGTC 61.170 55.000 0.00 0.00 0.00 3.18
134 135 1.732259 GTTGCCACATTGTCTAGGTCG 59.268 52.381 0.00 0.00 0.00 4.79
145 146 5.886960 TTGTCTAGGTCGTCCTTAACTAC 57.113 43.478 6.51 0.00 42.12 2.73
149 150 2.783135 AGGTCGTCCTTAACTACGTCA 58.217 47.619 0.00 0.00 42.12 4.35
154 155 6.071952 AGGTCGTCCTTAACTACGTCATTTAA 60.072 38.462 0.00 0.00 42.12 1.52
215 216 1.079543 CACTGACTTGCCCTCCTCG 60.080 63.158 0.00 0.00 0.00 4.63
241 242 2.158769 TCCATCGCTTGTTGCATCCTAT 60.159 45.455 0.00 0.00 43.06 2.57
261 267 7.175797 TCCTATATCTTTAGCTAGCAGCAGTA 58.824 38.462 18.83 2.98 45.56 2.74
284 290 3.002656 GGTACATGGAGAATTGTCATGCG 59.997 47.826 4.83 0.00 41.20 4.73
311 318 1.536073 CCAAGAGACCGCTCCACTCA 61.536 60.000 0.00 0.00 42.30 3.41
352 359 1.001487 CGCGTAATGTCGGTATACCCA 60.001 52.381 16.47 9.67 0.00 4.51
380 387 6.157211 GTGTCTATCAAAAAGAAGGTCGAGA 58.843 40.000 0.00 0.00 0.00 4.04
385 392 5.734855 TCAAAAAGAAGGTCGAGAAACTG 57.265 39.130 0.00 0.00 0.00 3.16
409 416 4.884458 TCTTTTGCGTGAACACAACATA 57.116 36.364 5.80 0.00 0.00 2.29
410 417 5.236655 TCTTTTGCGTGAACACAACATAA 57.763 34.783 5.80 4.03 0.00 1.90
411 418 5.270083 TCTTTTGCGTGAACACAACATAAG 58.730 37.500 15.05 15.05 32.58 1.73
412 419 4.884458 TTTGCGTGAACACAACATAAGA 57.116 36.364 5.80 0.00 0.00 2.10
413 420 3.870723 TGCGTGAACACAACATAAGAC 57.129 42.857 5.80 0.00 0.00 3.01
414 421 3.198872 TGCGTGAACACAACATAAGACA 58.801 40.909 5.80 0.00 0.00 3.41
415 422 3.001838 TGCGTGAACACAACATAAGACAC 59.998 43.478 5.80 0.00 0.00 3.67
416 423 3.783377 CGTGAACACAACATAAGACACG 58.217 45.455 0.00 0.00 42.21 4.49
417 424 3.541711 GTGAACACAACATAAGACACGC 58.458 45.455 0.00 0.00 0.00 5.34
428 435 3.050275 GACACGCAGGGGCAAGAC 61.050 66.667 0.00 0.00 41.24 3.01
451 458 7.339466 AGACATAACTGACTTTTGACCACTTTT 59.661 33.333 0.00 0.00 0.00 2.27
462 469 3.146066 TGACCACTTTTGCATGTCCTAC 58.854 45.455 0.00 0.00 0.00 3.18
464 471 1.135689 CCACTTTTGCATGTCCTACGC 60.136 52.381 0.00 0.00 0.00 4.42
465 472 1.535028 CACTTTTGCATGTCCTACGCA 59.465 47.619 0.00 0.00 0.00 5.24
502 509 6.262273 GGTTTCCTCATGTGTTTTCTCTGTTA 59.738 38.462 0.00 0.00 0.00 2.41
507 514 6.346919 CCTCATGTGTTTTCTCTGTTACTTCG 60.347 42.308 0.00 0.00 0.00 3.79
509 516 5.961395 TGTGTTTTCTCTGTTACTTCGAC 57.039 39.130 0.00 0.00 0.00 4.20
518 525 0.971386 GTTACTTCGACCACTCCCCA 59.029 55.000 0.00 0.00 0.00 4.96
519 526 0.971386 TTACTTCGACCACTCCCCAC 59.029 55.000 0.00 0.00 0.00 4.61
520 527 0.113776 TACTTCGACCACTCCCCACT 59.886 55.000 0.00 0.00 0.00 4.00
521 528 1.186267 ACTTCGACCACTCCCCACTC 61.186 60.000 0.00 0.00 0.00 3.51
522 529 0.900647 CTTCGACCACTCCCCACTCT 60.901 60.000 0.00 0.00 0.00 3.24
523 530 1.185618 TTCGACCACTCCCCACTCTG 61.186 60.000 0.00 0.00 0.00 3.35
525 532 2.930562 ACCACTCCCCACTCTGGC 60.931 66.667 0.00 0.00 35.79 4.85
527 534 2.930019 CACTCCCCACTCTGGCCA 60.930 66.667 4.71 4.71 35.79 5.36
562 569 4.809496 CCATCGCTGCCCCTGCTT 62.809 66.667 0.00 0.00 38.71 3.91
563 570 3.207669 CATCGCTGCCCCTGCTTC 61.208 66.667 0.00 0.00 38.71 3.86
567 574 4.811364 GCTGCCCCTGCTTCCTCC 62.811 72.222 0.00 0.00 38.71 4.30
584 617 4.624913 TCCTCCATGTACCATCTTCTTCT 58.375 43.478 0.00 0.00 0.00 2.85
673 2372 2.649331 CGATAGGACGAAACCTGTGT 57.351 50.000 9.87 0.00 40.81 3.72
680 2379 1.358759 CGAAACCTGTGTTGTGCCC 59.641 57.895 0.00 0.00 34.13 5.36
681 2380 1.739667 GAAACCTGTGTTGTGCCCC 59.260 57.895 0.00 0.00 34.13 5.80
682 2381 1.744320 GAAACCTGTGTTGTGCCCCC 61.744 60.000 0.00 0.00 34.13 5.40
683 2382 2.522198 AAACCTGTGTTGTGCCCCCA 62.522 55.000 0.00 0.00 34.13 4.96
685 2384 2.912025 CTGTGTTGTGCCCCCACC 60.912 66.667 0.00 0.00 41.35 4.61
693 2392 2.938243 TGCCCCCACCACTGCATA 60.938 61.111 0.00 0.00 0.00 3.14
695 2394 2.983879 GCCCCCACCACTGCATACT 61.984 63.158 0.00 0.00 0.00 2.12
696 2395 1.224592 CCCCCACCACTGCATACTC 59.775 63.158 0.00 0.00 0.00 2.59
704 2406 1.082954 ACTGCATACTCCCCACCCT 59.917 57.895 0.00 0.00 0.00 4.34
708 2410 1.770518 CATACTCCCCACCCTCCCC 60.771 68.421 0.00 0.00 0.00 4.81
751 2454 4.740822 AACCCCATGGCCTGCGAC 62.741 66.667 6.09 0.00 33.59 5.19
762 2465 2.125753 CTGCGACCAGGAGAGTGC 60.126 66.667 0.00 0.00 41.23 4.40
783 2486 1.089920 AACTGCATGATTCGGTGAGC 58.910 50.000 0.00 0.00 0.00 4.26
788 2491 1.683943 CATGATTCGGTGAGCCCAAT 58.316 50.000 0.00 0.00 0.00 3.16
831 2534 1.533731 TCGATTGTTCGGTTGAAAGCC 59.466 47.619 0.00 0.00 45.53 4.35
842 2545 7.596995 TGTTCGGTTGAAAGCCAAATAATTTAG 59.403 33.333 0.00 0.00 36.36 1.85
940 2670 1.596895 GAGTGTCTGACCTCCGTCCC 61.597 65.000 5.17 0.00 38.32 4.46
942 2672 1.304217 TGTCTGACCTCCGTCCCTC 60.304 63.158 5.17 0.00 38.32 4.30
954 2692 2.073101 GTCCCTCATCCACCCTCCC 61.073 68.421 0.00 0.00 0.00 4.30
961 2699 0.921896 CATCCACCCTCCCACATTCT 59.078 55.000 0.00 0.00 0.00 2.40
973 2711 0.463295 CACATTCTCCGCTGCAGGAT 60.463 55.000 17.12 0.00 39.96 3.24
977 2715 1.552799 TTCTCCGCTGCAGGATGGAA 61.553 55.000 17.12 4.34 39.96 3.53
1065 2806 1.815421 CGCCGACCAGCTGCTAAAT 60.815 57.895 8.66 0.00 0.00 1.40
1087 2833 0.842635 ACTCAAGGATCATCTGGGCC 59.157 55.000 0.00 0.00 0.00 5.80
1257 3003 1.945819 GCCATTGCTCTCTTCAACCGA 60.946 52.381 0.00 0.00 33.53 4.69
1261 3007 3.401033 TTGCTCTCTTCAACCGAATGA 57.599 42.857 0.00 0.00 0.00 2.57
1262 3008 3.401033 TGCTCTCTTCAACCGAATGAA 57.599 42.857 3.38 3.38 37.70 2.57
1281 3033 2.363795 CGAGAGGGCCACCAGGTA 60.364 66.667 6.18 0.00 40.13 3.08
1295 3047 0.107410 CAGGTAATAGCGCCCACCAA 60.107 55.000 16.63 0.00 33.27 3.67
1300 3052 1.095228 AATAGCGCCCACCAATCACG 61.095 55.000 2.29 0.00 0.00 4.35
1411 3163 1.017387 GGCGAACATCATCACCTTCC 58.983 55.000 0.00 0.00 0.00 3.46
1430 3182 1.614051 CCACAGCCTATTCAAGTGCCA 60.614 52.381 0.00 0.00 0.00 4.92
1431 3183 1.741706 CACAGCCTATTCAAGTGCCAG 59.258 52.381 0.00 0.00 0.00 4.85
1440 3192 1.882912 TCAAGTGCCAGTGTGACATC 58.117 50.000 0.00 0.00 0.00 3.06
1581 3336 2.587194 CTGCTCCGGATGAAGGCG 60.587 66.667 3.57 0.00 0.00 5.52
1628 3383 2.469162 TGGTGGCATACAACAGGGA 58.531 52.632 0.00 0.00 43.22 4.20
1629 3384 0.327924 TGGTGGCATACAACAGGGAG 59.672 55.000 0.00 0.00 43.22 4.30
1630 3385 0.394352 GGTGGCATACAACAGGGAGG 60.394 60.000 0.00 0.00 36.56 4.30
1631 3386 0.618458 GTGGCATACAACAGGGAGGA 59.382 55.000 0.00 0.00 0.00 3.71
1632 3387 0.911769 TGGCATACAACAGGGAGGAG 59.088 55.000 0.00 0.00 0.00 3.69
1633 3388 0.464554 GGCATACAACAGGGAGGAGC 60.465 60.000 0.00 0.00 0.00 4.70
1752 3507 3.365666 GCTCCATTATCGATGCATTGTGG 60.366 47.826 13.73 13.32 34.25 4.17
1827 3582 3.938778 GGTGTTCGACCGGATATTTTC 57.061 47.619 9.46 0.00 34.02 2.29
2019 3774 1.302907 ATTCCATGGCTGAGAAGGGT 58.697 50.000 6.96 0.00 0.00 4.34
2095 3850 6.846505 AGAAGGATCCCTTGTTGATATGACTA 59.153 38.462 8.55 0.00 44.82 2.59
2155 3910 8.593945 ACCCAACATCTGTATTTTCAACATAT 57.406 30.769 0.00 0.00 0.00 1.78
2184 3939 5.195940 AGTGCATATGCTAAGTGTGGAATT 58.804 37.500 27.13 0.00 42.66 2.17
2250 4005 2.069273 GTGAACCCTGATGAAGTCACG 58.931 52.381 0.00 0.00 32.22 4.35
2260 4015 6.461092 CCCTGATGAAGTCACGTATTTAGCTA 60.461 42.308 0.00 0.00 32.22 3.32
2280 4035 5.157940 CTATGATAGCTGGGTATTGCAGT 57.842 43.478 0.00 0.00 0.00 4.40
2289 4044 1.133792 GGGTATTGCAGTATGGGCAGT 60.134 52.381 0.00 0.00 43.05 4.40
2292 4047 4.019681 GGGTATTGCAGTATGGGCAGTATA 60.020 45.833 0.00 0.00 43.05 1.47
2293 4048 5.178797 GGTATTGCAGTATGGGCAGTATAG 58.821 45.833 0.00 0.00 43.05 1.31
2294 4049 4.982241 ATTGCAGTATGGGCAGTATAGT 57.018 40.909 0.00 0.00 43.05 2.12
2295 4050 6.070995 GGTATTGCAGTATGGGCAGTATAGTA 60.071 42.308 0.00 0.00 43.05 1.82
2296 4051 6.627087 ATTGCAGTATGGGCAGTATAGTAT 57.373 37.500 0.00 0.00 43.05 2.12
2297 4052 6.433847 TTGCAGTATGGGCAGTATAGTATT 57.566 37.500 0.00 0.00 43.05 1.89
2298 4053 7.547697 TTGCAGTATGGGCAGTATAGTATTA 57.452 36.000 0.00 0.00 43.05 0.98
2299 4054 7.170393 TGCAGTATGGGCAGTATAGTATTAG 57.830 40.000 0.00 0.00 36.11 1.73
2300 4055 6.724441 TGCAGTATGGGCAGTATAGTATTAGT 59.276 38.462 0.00 0.00 36.11 2.24
2301 4056 7.891712 TGCAGTATGGGCAGTATAGTATTAGTA 59.108 37.037 0.00 0.00 36.11 1.82
2302 4057 8.746530 GCAGTATGGGCAGTATAGTATTAGTAA 58.253 37.037 0.00 0.00 35.86 2.24
2307 4062 8.405418 TGGGCAGTATAGTATTAGTAAGTCTG 57.595 38.462 0.00 0.00 0.00 3.51
2308 4063 8.222637 TGGGCAGTATAGTATTAGTAAGTCTGA 58.777 37.037 0.00 0.00 0.00 3.27
2309 4064 8.513774 GGGCAGTATAGTATTAGTAAGTCTGAC 58.486 40.741 0.00 0.00 0.00 3.51
2310 4065 8.229137 GGCAGTATAGTATTAGTAAGTCTGACG 58.771 40.741 1.52 0.00 0.00 4.35
2311 4066 8.772705 GCAGTATAGTATTAGTAAGTCTGACGT 58.227 37.037 1.52 1.36 0.00 4.34
2313 4068 9.829507 AGTATAGTATTAGTAAGTCTGACGTGT 57.170 33.333 6.50 0.00 0.00 4.49
2314 4069 9.861138 GTATAGTATTAGTAAGTCTGACGTGTG 57.139 37.037 6.50 0.00 0.00 3.82
2315 4070 5.638783 AGTATTAGTAAGTCTGACGTGTGC 58.361 41.667 6.50 0.00 0.00 4.57
2316 4071 4.785511 ATTAGTAAGTCTGACGTGTGCT 57.214 40.909 6.50 5.90 0.00 4.40
2317 4072 5.892160 ATTAGTAAGTCTGACGTGTGCTA 57.108 39.130 6.50 5.03 0.00 3.49
2318 4073 5.694231 TTAGTAAGTCTGACGTGTGCTAA 57.306 39.130 6.50 10.04 0.00 3.09
2319 4074 4.162096 AGTAAGTCTGACGTGTGCTAAG 57.838 45.455 6.50 0.00 0.00 2.18
2320 4075 3.819337 AGTAAGTCTGACGTGTGCTAAGA 59.181 43.478 6.50 0.00 0.00 2.10
2321 4076 3.944055 AAGTCTGACGTGTGCTAAGAT 57.056 42.857 0.00 0.00 0.00 2.40
2322 4077 3.944055 AGTCTGACGTGTGCTAAGATT 57.056 42.857 0.00 0.00 0.00 2.40
2323 4078 4.258702 AGTCTGACGTGTGCTAAGATTT 57.741 40.909 0.00 0.00 0.00 2.17
2324 4079 4.238514 AGTCTGACGTGTGCTAAGATTTC 58.761 43.478 0.00 0.00 0.00 2.17
2325 4080 3.987868 GTCTGACGTGTGCTAAGATTTCA 59.012 43.478 0.00 0.00 0.00 2.69
2326 4081 4.090642 GTCTGACGTGTGCTAAGATTTCAG 59.909 45.833 0.00 0.00 0.00 3.02
2327 4082 4.022329 TCTGACGTGTGCTAAGATTTCAGA 60.022 41.667 0.00 0.00 36.71 3.27
2328 4083 4.627058 TGACGTGTGCTAAGATTTCAGAA 58.373 39.130 0.00 0.00 0.00 3.02
2329 4084 5.237815 TGACGTGTGCTAAGATTTCAGAAT 58.762 37.500 0.00 0.00 0.00 2.40
2330 4085 6.394809 TGACGTGTGCTAAGATTTCAGAATA 58.605 36.000 0.00 0.00 0.00 1.75
2331 4086 7.041721 TGACGTGTGCTAAGATTTCAGAATAT 58.958 34.615 0.00 0.00 0.00 1.28
2332 4087 8.194769 TGACGTGTGCTAAGATTTCAGAATATA 58.805 33.333 0.00 0.00 0.00 0.86
2333 4088 8.942338 ACGTGTGCTAAGATTTCAGAATATAA 57.058 30.769 0.00 0.00 0.00 0.98
2334 4089 8.818057 ACGTGTGCTAAGATTTCAGAATATAAC 58.182 33.333 0.00 0.00 0.00 1.89
2335 4090 8.817100 CGTGTGCTAAGATTTCAGAATATAACA 58.183 33.333 0.00 0.00 0.00 2.41
2348 4103 8.840200 TCAGAATATAACAGAAGTTAGGAGGT 57.160 34.615 0.00 0.00 43.02 3.85
2349 4104 8.696374 TCAGAATATAACAGAAGTTAGGAGGTG 58.304 37.037 0.00 0.00 43.02 4.00
2350 4105 8.696374 CAGAATATAACAGAAGTTAGGAGGTGA 58.304 37.037 0.00 0.00 43.02 4.02
2351 4106 9.268282 AGAATATAACAGAAGTTAGGAGGTGAA 57.732 33.333 0.00 0.00 43.02 3.18
2352 4107 9.535878 GAATATAACAGAAGTTAGGAGGTGAAG 57.464 37.037 0.00 0.00 43.02 3.02
2353 4108 6.936968 ATAACAGAAGTTAGGAGGTGAAGT 57.063 37.500 0.00 0.00 43.02 3.01
2354 4109 5.632034 AACAGAAGTTAGGAGGTGAAGTT 57.368 39.130 0.00 0.00 35.85 2.66
2355 4110 4.962155 ACAGAAGTTAGGAGGTGAAGTTG 58.038 43.478 0.00 0.00 0.00 3.16
2356 4111 4.202367 ACAGAAGTTAGGAGGTGAAGTTGG 60.202 45.833 0.00 0.00 0.00 3.77
2357 4112 3.974642 AGAAGTTAGGAGGTGAAGTTGGT 59.025 43.478 0.00 0.00 0.00 3.67
2358 4113 3.771577 AGTTAGGAGGTGAAGTTGGTG 57.228 47.619 0.00 0.00 0.00 4.17
2359 4114 2.152016 GTTAGGAGGTGAAGTTGGTGC 58.848 52.381 0.00 0.00 0.00 5.01
2360 4115 1.429930 TAGGAGGTGAAGTTGGTGCA 58.570 50.000 0.00 0.00 0.00 4.57
2361 4116 0.550914 AGGAGGTGAAGTTGGTGCAA 59.449 50.000 0.00 0.00 0.00 4.08
2362 4117 1.064017 AGGAGGTGAAGTTGGTGCAAA 60.064 47.619 0.00 0.00 0.00 3.68
2363 4118 1.963515 GGAGGTGAAGTTGGTGCAAAT 59.036 47.619 0.00 0.00 0.00 2.32
2364 4119 2.288395 GGAGGTGAAGTTGGTGCAAATG 60.288 50.000 0.00 0.00 0.00 2.32
2365 4120 2.622942 GAGGTGAAGTTGGTGCAAATGA 59.377 45.455 0.00 0.00 0.00 2.57
2366 4121 3.030291 AGGTGAAGTTGGTGCAAATGAA 58.970 40.909 0.00 0.00 0.00 2.57
2367 4122 3.642848 AGGTGAAGTTGGTGCAAATGAAT 59.357 39.130 0.00 0.00 0.00 2.57
2368 4123 4.832266 AGGTGAAGTTGGTGCAAATGAATA 59.168 37.500 0.00 0.00 0.00 1.75
2369 4124 5.304101 AGGTGAAGTTGGTGCAAATGAATAA 59.696 36.000 0.00 0.00 0.00 1.40
2370 4125 6.014327 AGGTGAAGTTGGTGCAAATGAATAAT 60.014 34.615 0.00 0.00 0.00 1.28
2371 4126 7.178274 AGGTGAAGTTGGTGCAAATGAATAATA 59.822 33.333 0.00 0.00 0.00 0.98
2372 4127 7.275560 GGTGAAGTTGGTGCAAATGAATAATAC 59.724 37.037 0.00 0.00 0.00 1.89
2373 4128 7.812191 GTGAAGTTGGTGCAAATGAATAATACA 59.188 33.333 0.00 0.00 0.00 2.29
2374 4129 7.812191 TGAAGTTGGTGCAAATGAATAATACAC 59.188 33.333 0.00 0.00 0.00 2.90
2375 4130 6.630071 AGTTGGTGCAAATGAATAATACACC 58.370 36.000 0.00 0.00 44.98 4.16
2378 4133 6.885735 GGTGCAAATGAATAATACACCAAC 57.114 37.500 0.00 0.00 44.32 3.77
2379 4134 5.810074 GGTGCAAATGAATAATACACCAACC 59.190 40.000 0.00 0.00 44.32 3.77
2380 4135 6.350949 GGTGCAAATGAATAATACACCAACCT 60.351 38.462 0.00 0.00 44.32 3.50
2381 4136 7.096551 GTGCAAATGAATAATACACCAACCTT 58.903 34.615 0.00 0.00 0.00 3.50
2382 4137 7.275560 GTGCAAATGAATAATACACCAACCTTC 59.724 37.037 0.00 0.00 0.00 3.46
2383 4138 7.178274 TGCAAATGAATAATACACCAACCTTCT 59.822 33.333 0.00 0.00 0.00 2.85
2384 4139 7.702348 GCAAATGAATAATACACCAACCTTCTC 59.298 37.037 0.00 0.00 0.00 2.87
2385 4140 8.960591 CAAATGAATAATACACCAACCTTCTCT 58.039 33.333 0.00 0.00 0.00 3.10
2391 4146 9.975218 AATAATACACCAACCTTCTCTAAATGT 57.025 29.630 0.00 0.00 0.00 2.71
2392 4147 7.687941 AATACACCAACCTTCTCTAAATGTG 57.312 36.000 0.00 0.00 0.00 3.21
2393 4148 5.048846 ACACCAACCTTCTCTAAATGTGT 57.951 39.130 0.00 0.00 0.00 3.72
2394 4149 6.182507 ACACCAACCTTCTCTAAATGTGTA 57.817 37.500 0.00 0.00 33.09 2.90
2395 4150 6.231211 ACACCAACCTTCTCTAAATGTGTAG 58.769 40.000 0.00 0.00 33.09 2.74
2396 4151 6.042781 ACACCAACCTTCTCTAAATGTGTAGA 59.957 38.462 0.00 0.00 33.09 2.59
2397 4152 6.934645 CACCAACCTTCTCTAAATGTGTAGAA 59.065 38.462 0.00 0.00 29.74 2.10
2398 4153 7.444183 CACCAACCTTCTCTAAATGTGTAGAAA 59.556 37.037 0.00 0.00 29.74 2.52
2399 4154 7.996644 ACCAACCTTCTCTAAATGTGTAGAAAA 59.003 33.333 0.00 0.00 29.74 2.29
2400 4155 9.014297 CCAACCTTCTCTAAATGTGTAGAAAAT 57.986 33.333 0.00 0.00 29.74 1.82
2401 4156 9.831737 CAACCTTCTCTAAATGTGTAGAAAATG 57.168 33.333 0.00 0.00 29.74 2.32
2402 4157 9.793259 AACCTTCTCTAAATGTGTAGAAAATGA 57.207 29.630 0.00 0.00 29.74 2.57
2403 4158 9.965902 ACCTTCTCTAAATGTGTAGAAAATGAT 57.034 29.630 0.00 0.00 29.74 2.45
2420 4175 8.432110 GAAAATGATTTCTCTTCTCCTCCTAC 57.568 38.462 0.00 0.00 41.43 3.18
2421 4176 7.502060 AAATGATTTCTCTTCTCCTCCTACA 57.498 36.000 0.00 0.00 0.00 2.74
2422 4177 7.688918 AATGATTTCTCTTCTCCTCCTACAT 57.311 36.000 0.00 0.00 0.00 2.29
2423 4178 8.789767 AATGATTTCTCTTCTCCTCCTACATA 57.210 34.615 0.00 0.00 0.00 2.29
2424 4179 8.971032 ATGATTTCTCTTCTCCTCCTACATAT 57.029 34.615 0.00 0.00 0.00 1.78
2426 4181 9.303116 TGATTTCTCTTCTCCTCCTACATATAC 57.697 37.037 0.00 0.00 0.00 1.47
2427 4182 9.303116 GATTTCTCTTCTCCTCCTACATATACA 57.697 37.037 0.00 0.00 0.00 2.29
2428 4183 9.661954 ATTTCTCTTCTCCTCCTACATATACAA 57.338 33.333 0.00 0.00 0.00 2.41
2429 4184 8.466617 TTCTCTTCTCCTCCTACATATACAAC 57.533 38.462 0.00 0.00 0.00 3.32
2430 4185 7.005296 TCTCTTCTCCTCCTACATATACAACC 58.995 42.308 0.00 0.00 0.00 3.77
2431 4186 6.679542 TCTTCTCCTCCTACATATACAACCA 58.320 40.000 0.00 0.00 0.00 3.67
2432 4187 6.550108 TCTTCTCCTCCTACATATACAACCAC 59.450 42.308 0.00 0.00 0.00 4.16
2433 4188 6.027025 TCTCCTCCTACATATACAACCACT 57.973 41.667 0.00 0.00 0.00 4.00
2434 4189 6.441222 TCTCCTCCTACATATACAACCACTT 58.559 40.000 0.00 0.00 0.00 3.16
2435 4190 6.550108 TCTCCTCCTACATATACAACCACTTC 59.450 42.308 0.00 0.00 0.00 3.01
2436 4191 5.601313 TCCTCCTACATATACAACCACTTCC 59.399 44.000 0.00 0.00 0.00 3.46
2437 4192 5.365605 CCTCCTACATATACAACCACTTCCA 59.634 44.000 0.00 0.00 0.00 3.53
2438 4193 6.043243 CCTCCTACATATACAACCACTTCCAT 59.957 42.308 0.00 0.00 0.00 3.41
2439 4194 7.062749 TCCTACATATACAACCACTTCCATC 57.937 40.000 0.00 0.00 0.00 3.51
2440 4195 6.844388 TCCTACATATACAACCACTTCCATCT 59.156 38.462 0.00 0.00 0.00 2.90
2441 4196 7.347222 TCCTACATATACAACCACTTCCATCTT 59.653 37.037 0.00 0.00 0.00 2.40
2442 4197 7.657761 CCTACATATACAACCACTTCCATCTTC 59.342 40.741 0.00 0.00 0.00 2.87
2443 4198 6.957631 ACATATACAACCACTTCCATCTTCA 58.042 36.000 0.00 0.00 0.00 3.02
2444 4199 6.823689 ACATATACAACCACTTCCATCTTCAC 59.176 38.462 0.00 0.00 0.00 3.18
2445 4200 3.864789 ACAACCACTTCCATCTTCACT 57.135 42.857 0.00 0.00 0.00 3.41
2446 4201 3.744660 ACAACCACTTCCATCTTCACTC 58.255 45.455 0.00 0.00 0.00 3.51
2447 4202 2.738846 CAACCACTTCCATCTTCACTCG 59.261 50.000 0.00 0.00 0.00 4.18
2448 4203 2.248248 ACCACTTCCATCTTCACTCGA 58.752 47.619 0.00 0.00 0.00 4.04
2449 4204 2.232452 ACCACTTCCATCTTCACTCGAG 59.768 50.000 11.84 11.84 0.00 4.04
2450 4205 2.266554 CACTTCCATCTTCACTCGAGC 58.733 52.381 13.61 0.00 0.00 5.03
2451 4206 1.895798 ACTTCCATCTTCACTCGAGCA 59.104 47.619 13.61 0.00 0.00 4.26
2452 4207 2.499289 ACTTCCATCTTCACTCGAGCAT 59.501 45.455 13.61 0.00 0.00 3.79
2453 4208 3.701542 ACTTCCATCTTCACTCGAGCATA 59.298 43.478 13.61 0.00 0.00 3.14
2454 4209 4.343526 ACTTCCATCTTCACTCGAGCATAT 59.656 41.667 13.61 0.00 0.00 1.78
2455 4210 5.536538 ACTTCCATCTTCACTCGAGCATATA 59.463 40.000 13.61 0.00 0.00 0.86
2456 4211 6.040955 ACTTCCATCTTCACTCGAGCATATAA 59.959 38.462 13.61 0.00 0.00 0.98
2457 4212 6.596309 TCCATCTTCACTCGAGCATATAAT 57.404 37.500 13.61 0.00 0.00 1.28
2458 4213 7.703058 TCCATCTTCACTCGAGCATATAATA 57.297 36.000 13.61 0.00 0.00 0.98
2459 4214 8.298729 TCCATCTTCACTCGAGCATATAATAT 57.701 34.615 13.61 0.00 0.00 1.28
2460 4215 9.408648 TCCATCTTCACTCGAGCATATAATATA 57.591 33.333 13.61 0.00 0.00 0.86
2485 4240 6.737720 ACATGATCACATCCACATACTAGT 57.262 37.500 0.00 0.00 34.15 2.57
2486 4241 6.519382 ACATGATCACATCCACATACTAGTG 58.481 40.000 5.39 0.00 35.55 2.74
2487 4242 4.948847 TGATCACATCCACATACTAGTGC 58.051 43.478 5.39 0.00 38.18 4.40
2488 4243 4.405358 TGATCACATCCACATACTAGTGCA 59.595 41.667 5.39 0.00 38.18 4.57
2489 4244 4.123497 TCACATCCACATACTAGTGCAC 57.877 45.455 9.40 9.40 38.18 4.57
2490 4245 3.769300 TCACATCCACATACTAGTGCACT 59.231 43.478 25.12 25.12 38.18 4.40
2491 4246 4.953579 TCACATCCACATACTAGTGCACTA 59.046 41.667 24.63 24.63 38.18 2.74
2503 4258 5.597813 CTAGTGCACTAGTCCAAACTTTG 57.402 43.478 35.77 14.53 40.72 2.77
2504 4259 2.618709 AGTGCACTAGTCCAAACTTTGC 59.381 45.455 20.16 0.00 40.88 3.68
2505 4260 2.357637 GTGCACTAGTCCAAACTTTGCA 59.642 45.455 10.32 9.30 44.64 4.08
2506 4261 2.357637 TGCACTAGTCCAAACTTTGCAC 59.642 45.455 9.30 0.00 43.23 4.57
2507 4262 2.618709 GCACTAGTCCAAACTTTGCACT 59.381 45.455 3.58 3.58 40.50 4.40
2508 4263 3.066760 GCACTAGTCCAAACTTTGCACTT 59.933 43.478 3.39 0.00 40.50 3.16
2509 4264 4.440112 GCACTAGTCCAAACTTTGCACTTT 60.440 41.667 3.39 0.00 40.50 2.66
2510 4265 5.273944 CACTAGTCCAAACTTTGCACTTTC 58.726 41.667 3.39 0.00 36.92 2.62
2511 4266 3.801114 AGTCCAAACTTTGCACTTTCC 57.199 42.857 0.00 0.00 28.74 3.13
2512 4267 3.365472 AGTCCAAACTTTGCACTTTCCT 58.635 40.909 0.00 0.00 28.74 3.36
2513 4268 3.769300 AGTCCAAACTTTGCACTTTCCTT 59.231 39.130 0.00 0.00 28.74 3.36
2514 4269 4.112634 GTCCAAACTTTGCACTTTCCTTC 58.887 43.478 0.00 0.00 0.00 3.46
2515 4270 3.766591 TCCAAACTTTGCACTTTCCTTCA 59.233 39.130 0.00 0.00 0.00 3.02
2516 4271 4.405358 TCCAAACTTTGCACTTTCCTTCAT 59.595 37.500 0.00 0.00 0.00 2.57
2517 4272 5.104982 TCCAAACTTTGCACTTTCCTTCATT 60.105 36.000 0.00 0.00 0.00 2.57
2518 4273 5.234972 CCAAACTTTGCACTTTCCTTCATTC 59.765 40.000 0.00 0.00 0.00 2.67
2519 4274 5.859205 AACTTTGCACTTTCCTTCATTCT 57.141 34.783 0.00 0.00 0.00 2.40
2520 4275 6.959639 AACTTTGCACTTTCCTTCATTCTA 57.040 33.333 0.00 0.00 0.00 2.10
2521 4276 6.566197 ACTTTGCACTTTCCTTCATTCTAG 57.434 37.500 0.00 0.00 0.00 2.43
2522 4277 6.064717 ACTTTGCACTTTCCTTCATTCTAGT 58.935 36.000 0.00 0.00 0.00 2.57
2523 4278 7.224297 ACTTTGCACTTTCCTTCATTCTAGTA 58.776 34.615 0.00 0.00 0.00 1.82
2524 4279 7.719633 ACTTTGCACTTTCCTTCATTCTAGTAA 59.280 33.333 0.00 0.00 0.00 2.24
2525 4280 7.435068 TTGCACTTTCCTTCATTCTAGTAAC 57.565 36.000 0.00 0.00 0.00 2.50
2526 4281 6.530120 TGCACTTTCCTTCATTCTAGTAACA 58.470 36.000 0.00 0.00 0.00 2.41
2527 4282 7.168219 TGCACTTTCCTTCATTCTAGTAACAT 58.832 34.615 0.00 0.00 0.00 2.71
2528 4283 7.665559 TGCACTTTCCTTCATTCTAGTAACATT 59.334 33.333 0.00 0.00 0.00 2.71
2529 4284 7.965107 GCACTTTCCTTCATTCTAGTAACATTG 59.035 37.037 0.00 0.00 0.00 2.82
2530 4285 7.965107 CACTTTCCTTCATTCTAGTAACATTGC 59.035 37.037 0.00 0.00 0.00 3.56
2531 4286 7.665559 ACTTTCCTTCATTCTAGTAACATTGCA 59.334 33.333 0.00 0.00 0.00 4.08
2532 4287 7.615582 TTCCTTCATTCTAGTAACATTGCAG 57.384 36.000 0.00 0.00 0.00 4.41
2533 4288 6.711277 TCCTTCATTCTAGTAACATTGCAGT 58.289 36.000 0.00 0.00 0.00 4.40
2534 4289 7.847096 TCCTTCATTCTAGTAACATTGCAGTA 58.153 34.615 0.00 0.00 0.00 2.74
2535 4290 8.486210 TCCTTCATTCTAGTAACATTGCAGTAT 58.514 33.333 0.00 0.00 0.00 2.12
2536 4291 9.764363 CCTTCATTCTAGTAACATTGCAGTATA 57.236 33.333 0.00 0.00 0.00 1.47
2539 4294 9.244799 TCATTCTAGTAACATTGCAGTATAACG 57.755 33.333 0.00 0.00 0.00 3.18
2540 4295 9.031360 CATTCTAGTAACATTGCAGTATAACGT 57.969 33.333 0.00 0.00 0.00 3.99
2544 4299 7.230466 AGTAACATTGCAGTATAACGTAAGC 57.770 36.000 0.00 0.00 45.62 3.09
2545 4300 6.814644 AGTAACATTGCAGTATAACGTAAGCA 59.185 34.615 0.00 0.00 45.62 3.91
2546 4301 5.464965 ACATTGCAGTATAACGTAAGCAC 57.535 39.130 0.00 0.00 45.62 4.40
2555 4310 3.463505 CGTAAGCACGTGAGCTGG 58.536 61.111 22.23 0.36 45.89 4.85
2556 4311 2.094659 CGTAAGCACGTGAGCTGGG 61.095 63.158 22.23 0.00 45.89 4.45
2557 4312 1.292223 GTAAGCACGTGAGCTGGGA 59.708 57.895 22.23 0.00 45.89 4.37
2558 4313 0.108138 GTAAGCACGTGAGCTGGGAT 60.108 55.000 22.23 0.00 45.89 3.85
2559 4314 1.136305 GTAAGCACGTGAGCTGGGATA 59.864 52.381 22.23 0.00 45.89 2.59
2560 4315 0.176680 AAGCACGTGAGCTGGGATAG 59.823 55.000 22.23 0.00 45.89 2.08
2561 4316 0.972983 AGCACGTGAGCTGGGATAGT 60.973 55.000 22.23 0.00 44.66 2.12
2562 4317 0.807667 GCACGTGAGCTGGGATAGTG 60.808 60.000 22.23 0.00 0.00 2.74
2563 4318 0.532573 CACGTGAGCTGGGATAGTGT 59.467 55.000 10.90 0.00 0.00 3.55
2564 4319 1.066858 CACGTGAGCTGGGATAGTGTT 60.067 52.381 10.90 0.00 0.00 3.32
2565 4320 1.204941 ACGTGAGCTGGGATAGTGTTC 59.795 52.381 0.00 0.00 0.00 3.18
2566 4321 1.204704 CGTGAGCTGGGATAGTGTTCA 59.795 52.381 0.00 0.00 0.00 3.18
2567 4322 2.353704 CGTGAGCTGGGATAGTGTTCAA 60.354 50.000 0.00 0.00 0.00 2.69
2568 4323 3.674997 GTGAGCTGGGATAGTGTTCAAA 58.325 45.455 0.00 0.00 0.00 2.69
2569 4324 4.072131 GTGAGCTGGGATAGTGTTCAAAA 58.928 43.478 0.00 0.00 0.00 2.44
2570 4325 4.072131 TGAGCTGGGATAGTGTTCAAAAC 58.928 43.478 0.00 0.00 0.00 2.43
2571 4326 3.421844 AGCTGGGATAGTGTTCAAAACC 58.578 45.455 0.00 0.00 0.00 3.27
2572 4327 2.161609 GCTGGGATAGTGTTCAAAACCG 59.838 50.000 0.00 0.00 0.00 4.44
2573 4328 3.670625 CTGGGATAGTGTTCAAAACCGA 58.329 45.455 0.00 0.00 0.00 4.69
2574 4329 4.069304 CTGGGATAGTGTTCAAAACCGAA 58.931 43.478 0.00 0.00 0.00 4.30
2575 4330 4.462133 TGGGATAGTGTTCAAAACCGAAA 58.538 39.130 0.00 0.00 0.00 3.46
2576 4331 5.074115 TGGGATAGTGTTCAAAACCGAAAT 58.926 37.500 0.00 0.00 0.00 2.17
2577 4332 5.048364 TGGGATAGTGTTCAAAACCGAAATG 60.048 40.000 0.00 0.00 0.00 2.32
2578 4333 5.399013 GGATAGTGTTCAAAACCGAAATGG 58.601 41.667 0.00 0.00 46.41 3.16
2593 4348 6.693315 CCGAAATGGTTGATATAAAGGTGT 57.307 37.500 0.00 0.00 0.00 4.16
2594 4349 7.795482 CCGAAATGGTTGATATAAAGGTGTA 57.205 36.000 0.00 0.00 0.00 2.90
2595 4350 7.861630 CCGAAATGGTTGATATAAAGGTGTAG 58.138 38.462 0.00 0.00 0.00 2.74
2596 4351 7.041372 CCGAAATGGTTGATATAAAGGTGTAGG 60.041 40.741 0.00 0.00 0.00 3.18
2597 4352 7.713507 CGAAATGGTTGATATAAAGGTGTAGGA 59.286 37.037 0.00 0.00 0.00 2.94
2598 4353 9.403583 GAAATGGTTGATATAAAGGTGTAGGAA 57.596 33.333 0.00 0.00 0.00 3.36
2599 4354 9.936329 AAATGGTTGATATAAAGGTGTAGGAAT 57.064 29.630 0.00 0.00 0.00 3.01
2602 4357 8.656806 TGGTTGATATAAAGGTGTAGGAATAGG 58.343 37.037 0.00 0.00 0.00 2.57
2603 4358 8.877195 GGTTGATATAAAGGTGTAGGAATAGGA 58.123 37.037 0.00 0.00 0.00 2.94
2604 4359 9.930693 GTTGATATAAAGGTGTAGGAATAGGAG 57.069 37.037 0.00 0.00 0.00 3.69
2605 4360 9.892444 TTGATATAAAGGTGTAGGAATAGGAGA 57.108 33.333 0.00 0.00 0.00 3.71
2606 4361 9.310449 TGATATAAAGGTGTAGGAATAGGAGAC 57.690 37.037 0.00 0.00 0.00 3.36
2607 4362 9.310449 GATATAAAGGTGTAGGAATAGGAGACA 57.690 37.037 0.00 0.00 0.00 3.41
2608 4363 9.845214 ATATAAAGGTGTAGGAATAGGAGACAT 57.155 33.333 0.00 0.00 0.00 3.06
2609 4364 6.487299 AAAGGTGTAGGAATAGGAGACATC 57.513 41.667 0.00 0.00 0.00 3.06
2610 4365 5.144159 AGGTGTAGGAATAGGAGACATCA 57.856 43.478 0.00 0.00 0.00 3.07
2611 4366 5.144100 AGGTGTAGGAATAGGAGACATCAG 58.856 45.833 0.00 0.00 0.00 2.90
2612 4367 4.282195 GGTGTAGGAATAGGAGACATCAGG 59.718 50.000 0.00 0.00 0.00 3.86
2613 4368 5.141182 GTGTAGGAATAGGAGACATCAGGA 58.859 45.833 0.00 0.00 0.00 3.86
2614 4369 5.598830 GTGTAGGAATAGGAGACATCAGGAA 59.401 44.000 0.00 0.00 0.00 3.36
2615 4370 6.098409 GTGTAGGAATAGGAGACATCAGGAAA 59.902 42.308 0.00 0.00 0.00 3.13
2616 4371 5.885449 AGGAATAGGAGACATCAGGAAAG 57.115 43.478 0.00 0.00 0.00 2.62
2617 4372 5.533112 AGGAATAGGAGACATCAGGAAAGA 58.467 41.667 0.00 0.00 0.00 2.52
2618 4373 5.966935 AGGAATAGGAGACATCAGGAAAGAA 59.033 40.000 0.00 0.00 0.00 2.52
2619 4374 6.099557 AGGAATAGGAGACATCAGGAAAGAAG 59.900 42.308 0.00 0.00 0.00 2.85
2620 4375 3.625649 AGGAGACATCAGGAAAGAAGC 57.374 47.619 0.00 0.00 0.00 3.86
2621 4376 2.909006 AGGAGACATCAGGAAAGAAGCA 59.091 45.455 0.00 0.00 0.00 3.91
2622 4377 3.055240 AGGAGACATCAGGAAAGAAGCAG 60.055 47.826 0.00 0.00 0.00 4.24
2623 4378 2.677337 GAGACATCAGGAAAGAAGCAGC 59.323 50.000 0.00 0.00 0.00 5.25
2624 4379 1.742268 GACATCAGGAAAGAAGCAGCC 59.258 52.381 0.00 0.00 0.00 4.85
2625 4380 1.353694 ACATCAGGAAAGAAGCAGCCT 59.646 47.619 0.00 0.00 0.00 4.58
2626 4381 2.573462 ACATCAGGAAAGAAGCAGCCTA 59.427 45.455 0.00 0.00 0.00 3.93
2627 4382 2.770164 TCAGGAAAGAAGCAGCCTAC 57.230 50.000 0.00 0.00 0.00 3.18
2628 4383 2.260822 TCAGGAAAGAAGCAGCCTACT 58.739 47.619 0.00 0.00 0.00 2.57
2629 4384 2.234908 TCAGGAAAGAAGCAGCCTACTC 59.765 50.000 0.00 0.00 0.00 2.59
2630 4385 2.235898 CAGGAAAGAAGCAGCCTACTCT 59.764 50.000 0.00 0.00 0.00 3.24
2631 4386 2.499693 AGGAAAGAAGCAGCCTACTCTC 59.500 50.000 0.00 0.00 0.00 3.20
2632 4387 2.535331 GAAAGAAGCAGCCTACTCTCG 58.465 52.381 0.00 0.00 0.00 4.04
2633 4388 1.551452 AAGAAGCAGCCTACTCTCGT 58.449 50.000 0.00 0.00 0.00 4.18
2634 4389 1.099689 AGAAGCAGCCTACTCTCGTC 58.900 55.000 0.00 0.00 0.00 4.20
2635 4390 1.099689 GAAGCAGCCTACTCTCGTCT 58.900 55.000 0.00 0.00 0.00 4.18
2636 4391 1.064952 GAAGCAGCCTACTCTCGTCTC 59.935 57.143 0.00 0.00 0.00 3.36
2637 4392 0.254747 AGCAGCCTACTCTCGTCTCT 59.745 55.000 0.00 0.00 0.00 3.10
2638 4393 0.661020 GCAGCCTACTCTCGTCTCTC 59.339 60.000 0.00 0.00 0.00 3.20
2639 4394 0.934496 CAGCCTACTCTCGTCTCTCG 59.066 60.000 0.00 0.00 41.41 4.04
2640 4395 0.825410 AGCCTACTCTCGTCTCTCGA 59.175 55.000 0.00 0.00 46.83 4.04
2641 4396 0.932399 GCCTACTCTCGTCTCTCGAC 59.068 60.000 0.00 0.00 44.01 4.20
2642 4397 1.739707 GCCTACTCTCGTCTCTCGACA 60.740 57.143 0.00 0.00 44.01 4.35
2643 4398 2.828877 CCTACTCTCGTCTCTCGACAT 58.171 52.381 0.00 0.00 44.01 3.06
2644 4399 2.542178 CCTACTCTCGTCTCTCGACATG 59.458 54.545 0.00 0.00 44.01 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.593492 TCTATATCTTGACATCAACCATTTCG 57.407 34.615 0.00 0.00 0.00 3.46
36 37 7.764617 TCTCTCCTGATGACTCCTATTTCTAT 58.235 38.462 0.00 0.00 0.00 1.98
40 41 5.070313 GCTTCTCTCCTGATGACTCCTATTT 59.930 44.000 0.00 0.00 0.00 1.40
51 52 3.960102 CTCTAGGTTGCTTCTCTCCTGAT 59.040 47.826 0.00 0.00 0.00 2.90
73 74 3.058293 TCGATGAATGCACTTCAAACACC 60.058 43.478 13.21 3.75 46.62 4.16
111 112 1.086696 CTAGACAATGTGGCAACCCG 58.913 55.000 0.00 0.00 0.00 5.28
154 155 5.705609 AGCTGACGAATAACCACATTTTT 57.294 34.783 0.00 0.00 0.00 1.94
209 210 2.851071 GCGATGGACCTCCGAGGAG 61.851 68.421 21.89 12.06 37.67 3.69
215 216 1.648467 GCAACAAGCGATGGACCTCC 61.648 60.000 0.00 0.00 0.00 4.30
241 242 5.141182 ACCTACTGCTGCTAGCTAAAGATA 58.859 41.667 17.23 1.04 42.97 1.98
261 267 4.202441 GCATGACAATTCTCCATGTACCT 58.798 43.478 0.00 0.00 39.69 3.08
284 290 2.046217 GGTCTCTTGGCCGGAACC 60.046 66.667 5.05 0.00 0.00 3.62
311 318 3.820467 CGGGGTGCATTATTATCACACAT 59.180 43.478 0.00 0.00 35.93 3.21
352 359 6.147821 CGACCTTCTTTTTGATAGACACATGT 59.852 38.462 0.00 0.00 0.00 3.21
409 416 2.281761 CTTGCCCCTGCGTGTCTT 60.282 61.111 0.00 0.00 41.78 3.01
410 417 3.241530 TCTTGCCCCTGCGTGTCT 61.242 61.111 0.00 0.00 41.78 3.41
411 418 3.050275 GTCTTGCCCCTGCGTGTC 61.050 66.667 0.00 0.00 41.78 3.67
412 419 1.836999 TATGTCTTGCCCCTGCGTGT 61.837 55.000 0.00 0.00 41.78 4.49
413 420 0.676466 TTATGTCTTGCCCCTGCGTG 60.676 55.000 0.00 0.00 41.78 5.34
414 421 0.676782 GTTATGTCTTGCCCCTGCGT 60.677 55.000 0.00 0.00 41.78 5.24
415 422 0.392998 AGTTATGTCTTGCCCCTGCG 60.393 55.000 0.00 0.00 41.78 5.18
416 423 1.098050 CAGTTATGTCTTGCCCCTGC 58.902 55.000 0.00 0.00 38.26 4.85
417 424 2.026822 AGTCAGTTATGTCTTGCCCCTG 60.027 50.000 0.00 0.00 0.00 4.45
428 435 6.198966 GCAAAAGTGGTCAAAAGTCAGTTATG 59.801 38.462 0.00 0.00 0.00 1.90
462 469 1.133025 GAAACCAACCATCCTCATGCG 59.867 52.381 0.00 0.00 0.00 4.73
464 471 3.091633 AGGAAACCAACCATCCTCATG 57.908 47.619 0.00 0.00 39.36 3.07
502 509 1.152312 AGTGGGGAGTGGTCGAAGT 60.152 57.895 0.00 0.00 0.00 3.01
507 514 2.960688 GCCAGAGTGGGGAGTGGTC 61.961 68.421 0.00 0.00 38.19 4.02
509 516 3.721706 GGCCAGAGTGGGGAGTGG 61.722 72.222 0.00 0.00 38.19 4.00
525 532 2.521465 TGTTTGGCTGGCAGGTGG 60.521 61.111 17.64 0.00 0.00 4.61
527 534 2.906897 CGTGTTTGGCTGGCAGGT 60.907 61.111 17.64 0.00 0.00 4.00
538 545 3.737172 GGCAGCGATGGCGTGTTT 61.737 61.111 12.68 0.00 46.35 2.83
547 554 4.496336 GGAAGCAGGGGCAGCGAT 62.496 66.667 0.00 0.00 44.61 4.58
656 689 3.399330 CACAACACAGGTTTCGTCCTAT 58.601 45.455 0.00 0.00 35.87 2.57
664 697 1.760480 GGGGGCACAACACAGGTTT 60.760 57.895 0.00 0.00 34.21 3.27
666 699 3.425014 TGGGGGCACAACACAGGT 61.425 61.111 0.00 0.00 0.00 4.00
671 2370 3.425014 AGTGGTGGGGGCACAACA 61.425 61.111 0.00 0.00 35.29 3.33
673 2372 4.912395 GCAGTGGTGGGGGCACAA 62.912 66.667 0.00 0.00 0.00 3.33
680 2379 1.224592 GGGAGTATGCAGTGGTGGG 59.775 63.158 0.00 0.00 0.00 4.61
681 2380 1.224592 GGGGAGTATGCAGTGGTGG 59.775 63.158 0.00 0.00 0.00 4.61
682 2381 0.392998 GTGGGGAGTATGCAGTGGTG 60.393 60.000 0.00 0.00 0.00 4.17
683 2382 1.562672 GGTGGGGAGTATGCAGTGGT 61.563 60.000 0.00 0.00 0.00 4.16
685 2384 1.224592 GGGTGGGGAGTATGCAGTG 59.775 63.158 0.00 0.00 0.00 3.66
704 2406 1.488705 AACAATGCTGGAGACGGGGA 61.489 55.000 0.00 0.00 37.13 4.81
725 2427 0.972471 GCCATGGGGTTCCCTTCTTG 60.972 60.000 15.13 1.37 45.70 3.02
726 2428 1.388133 GCCATGGGGTTCCCTTCTT 59.612 57.895 15.13 0.00 45.70 2.52
751 2454 2.251600 GCAGTTTGCACTCTCCTGG 58.748 57.895 0.00 0.00 44.26 4.45
762 2465 2.730090 GCTCACCGAATCATGCAGTTTG 60.730 50.000 0.00 0.00 0.00 2.93
788 2491 7.606073 TCGAACATTCATAACAGAAATCCAAGA 59.394 33.333 0.00 0.00 0.00 3.02
842 2545 4.574013 CACTTTGCTTAGGTGATGATCCTC 59.426 45.833 0.00 0.00 36.60 3.71
940 2670 0.921896 AATGTGGGAGGGTGGATGAG 59.078 55.000 0.00 0.00 0.00 2.90
942 2672 0.921896 AGAATGTGGGAGGGTGGATG 59.078 55.000 0.00 0.00 0.00 3.51
954 2692 0.463295 ATCCTGCAGCGGAGAATGTG 60.463 55.000 8.66 0.00 36.31 3.21
961 2699 2.123248 TTGTTCCATCCTGCAGCGGA 62.123 55.000 8.66 10.91 37.50 5.54
973 2711 2.568956 CAGATCAGGAGGTCTTGTTCCA 59.431 50.000 0.00 0.00 35.88 3.53
977 2715 0.534412 CGCAGATCAGGAGGTCTTGT 59.466 55.000 0.00 0.00 0.00 3.16
1017 2755 3.160748 GAGCTGGAGGAGGAGCCC 61.161 72.222 0.00 0.00 35.69 5.19
1065 2806 3.117888 GGCCCAGATGATCCTTGAGTTTA 60.118 47.826 0.00 0.00 0.00 2.01
1087 2833 3.905678 CGGCTGGAGCGTCCTAGG 61.906 72.222 0.82 0.82 43.26 3.02
1257 3003 1.299976 GTGGCCCTCTCGGTTCATT 59.700 57.895 0.00 0.00 0.00 2.57
1261 3007 3.322466 CTGGTGGCCCTCTCGGTT 61.322 66.667 0.00 0.00 0.00 4.44
1281 3033 1.095228 CGTGATTGGTGGGCGCTATT 61.095 55.000 7.64 0.00 0.00 1.73
1295 3047 6.479001 GTCAATTAGTATGTTGTAGGCGTGAT 59.521 38.462 0.00 0.00 0.00 3.06
1300 3052 5.817816 AGCAGTCAATTAGTATGTTGTAGGC 59.182 40.000 0.00 0.00 0.00 3.93
1346 3098 2.216782 AAAGAAGGCAGGCCCTAGGC 62.217 60.000 6.70 1.74 45.62 3.93
1411 3163 1.741706 CTGGCACTTGAATAGGCTGTG 59.258 52.381 0.00 0.00 0.00 3.66
1440 3192 1.153005 GGCCTCCTCCATCTGCTTG 60.153 63.158 0.00 0.00 0.00 4.01
1466 3218 1.342819 CAGGTATCCTGTAGAGCAGCC 59.657 57.143 7.55 0.00 45.82 4.85
1581 3336 2.278332 AGTGGTCAGCTCCCTTTTTC 57.722 50.000 0.87 0.00 0.00 2.29
1633 3388 3.951680 ACCCTCGTTAATTAAGCCATTGG 59.048 43.478 0.00 0.00 0.00 3.16
1649 3404 1.464997 GCTTTGCTTAGTTCACCCTCG 59.535 52.381 0.00 0.00 0.00 4.63
1752 3507 1.538047 TGTCCATTGCTCCTGCTTTC 58.462 50.000 0.00 0.00 40.48 2.62
1827 3582 5.423290 TCCATGGATCAGGCTAGTATATGTG 59.577 44.000 11.44 0.00 0.00 3.21
2019 3774 8.080417 GCGTATGAGACTGTATTAGGTTTATGA 58.920 37.037 0.00 0.00 0.00 2.15
2095 3850 2.328819 GCCATCAGCTCACAGAGATT 57.671 50.000 0.00 0.00 38.99 2.40
2155 3910 6.260714 CCACACTTAGCATATGCACTAATCAA 59.739 38.462 28.62 9.84 45.16 2.57
2184 3939 5.052693 AGAAAAGCATAGCCACATCCATA 57.947 39.130 0.00 0.00 0.00 2.74
2260 4015 5.494724 CATACTGCAATACCCAGCTATCAT 58.505 41.667 0.00 0.00 33.65 2.45
2289 4044 8.554528 GCACACGTCAGACTTACTAATACTATA 58.445 37.037 0.00 0.00 0.00 1.31
2292 4047 5.415077 AGCACACGTCAGACTTACTAATACT 59.585 40.000 0.00 0.00 0.00 2.12
2293 4048 5.638783 AGCACACGTCAGACTTACTAATAC 58.361 41.667 0.00 0.00 0.00 1.89
2294 4049 5.892160 AGCACACGTCAGACTTACTAATA 57.108 39.130 0.00 0.00 0.00 0.98
2295 4050 4.785511 AGCACACGTCAGACTTACTAAT 57.214 40.909 0.00 0.00 0.00 1.73
2296 4051 5.471116 TCTTAGCACACGTCAGACTTACTAA 59.529 40.000 0.00 0.00 0.00 2.24
2297 4052 4.999311 TCTTAGCACACGTCAGACTTACTA 59.001 41.667 0.00 0.00 0.00 1.82
2298 4053 3.819337 TCTTAGCACACGTCAGACTTACT 59.181 43.478 0.00 0.00 0.00 2.24
2299 4054 4.156664 TCTTAGCACACGTCAGACTTAC 57.843 45.455 0.00 0.00 0.00 2.34
2300 4055 5.386958 AATCTTAGCACACGTCAGACTTA 57.613 39.130 0.00 0.00 0.00 2.24
2301 4056 3.944055 ATCTTAGCACACGTCAGACTT 57.056 42.857 0.00 0.00 0.00 3.01
2302 4057 3.944055 AATCTTAGCACACGTCAGACT 57.056 42.857 0.00 0.00 0.00 3.24
2303 4058 3.987868 TGAAATCTTAGCACACGTCAGAC 59.012 43.478 0.00 0.00 0.00 3.51
2304 4059 4.022329 TCTGAAATCTTAGCACACGTCAGA 60.022 41.667 0.00 0.00 38.28 3.27
2305 4060 4.237724 TCTGAAATCTTAGCACACGTCAG 58.762 43.478 0.00 0.00 34.01 3.51
2306 4061 4.251543 TCTGAAATCTTAGCACACGTCA 57.748 40.909 0.00 0.00 0.00 4.35
2307 4062 5.786401 ATTCTGAAATCTTAGCACACGTC 57.214 39.130 0.00 0.00 0.00 4.34
2308 4063 8.818057 GTTATATTCTGAAATCTTAGCACACGT 58.182 33.333 0.00 0.00 0.00 4.49
2309 4064 8.817100 TGTTATATTCTGAAATCTTAGCACACG 58.183 33.333 0.00 0.00 0.00 4.49
2322 4077 9.268282 ACCTCCTAACTTCTGTTATATTCTGAA 57.732 33.333 0.00 0.00 37.92 3.02
2323 4078 8.696374 CACCTCCTAACTTCTGTTATATTCTGA 58.304 37.037 0.00 0.00 37.92 3.27
2324 4079 8.696374 TCACCTCCTAACTTCTGTTATATTCTG 58.304 37.037 0.00 0.00 37.92 3.02
2325 4080 8.840200 TCACCTCCTAACTTCTGTTATATTCT 57.160 34.615 0.00 0.00 37.92 2.40
2326 4081 9.535878 CTTCACCTCCTAACTTCTGTTATATTC 57.464 37.037 0.00 0.00 37.92 1.75
2327 4082 9.047947 ACTTCACCTCCTAACTTCTGTTATATT 57.952 33.333 0.00 0.00 37.92 1.28
2328 4083 8.611051 ACTTCACCTCCTAACTTCTGTTATAT 57.389 34.615 0.00 0.00 37.92 0.86
2329 4084 8.311836 CAACTTCACCTCCTAACTTCTGTTATA 58.688 37.037 0.00 0.00 37.92 0.98
2330 4085 6.936968 ACTTCACCTCCTAACTTCTGTTAT 57.063 37.500 0.00 0.00 37.92 1.89
2331 4086 6.463897 CCAACTTCACCTCCTAACTTCTGTTA 60.464 42.308 0.00 0.00 37.59 2.41
2332 4087 5.368989 CAACTTCACCTCCTAACTTCTGTT 58.631 41.667 0.00 0.00 39.98 3.16
2333 4088 4.202367 CCAACTTCACCTCCTAACTTCTGT 60.202 45.833 0.00 0.00 0.00 3.41
2334 4089 4.202367 ACCAACTTCACCTCCTAACTTCTG 60.202 45.833 0.00 0.00 0.00 3.02
2335 4090 3.974642 ACCAACTTCACCTCCTAACTTCT 59.025 43.478 0.00 0.00 0.00 2.85
2336 4091 4.065789 CACCAACTTCACCTCCTAACTTC 58.934 47.826 0.00 0.00 0.00 3.01
2337 4092 3.747708 GCACCAACTTCACCTCCTAACTT 60.748 47.826 0.00 0.00 0.00 2.66
2338 4093 2.224548 GCACCAACTTCACCTCCTAACT 60.225 50.000 0.00 0.00 0.00 2.24
2339 4094 2.152016 GCACCAACTTCACCTCCTAAC 58.848 52.381 0.00 0.00 0.00 2.34
2340 4095 1.771854 TGCACCAACTTCACCTCCTAA 59.228 47.619 0.00 0.00 0.00 2.69
2341 4096 1.429930 TGCACCAACTTCACCTCCTA 58.570 50.000 0.00 0.00 0.00 2.94
2342 4097 0.550914 TTGCACCAACTTCACCTCCT 59.449 50.000 0.00 0.00 0.00 3.69
2343 4098 1.398692 TTTGCACCAACTTCACCTCC 58.601 50.000 0.00 0.00 0.00 4.30
2344 4099 2.622942 TCATTTGCACCAACTTCACCTC 59.377 45.455 0.00 0.00 0.00 3.85
2345 4100 2.665165 TCATTTGCACCAACTTCACCT 58.335 42.857 0.00 0.00 0.00 4.00
2346 4101 3.451141 TTCATTTGCACCAACTTCACC 57.549 42.857 0.00 0.00 0.00 4.02
2347 4102 7.812191 TGTATTATTCATTTGCACCAACTTCAC 59.188 33.333 0.00 0.00 0.00 3.18
2348 4103 7.812191 GTGTATTATTCATTTGCACCAACTTCA 59.188 33.333 0.00 0.00 0.00 3.02
2349 4104 7.275560 GGTGTATTATTCATTTGCACCAACTTC 59.724 37.037 0.00 0.00 42.97 3.01
2350 4105 7.096551 GGTGTATTATTCATTTGCACCAACTT 58.903 34.615 0.00 0.00 42.97 2.66
2351 4106 6.630071 GGTGTATTATTCATTTGCACCAACT 58.370 36.000 0.00 0.00 42.97 3.16
2352 4107 6.885735 GGTGTATTATTCATTTGCACCAAC 57.114 37.500 0.00 0.00 42.97 3.77
2355 4110 5.810074 GGTTGGTGTATTATTCATTTGCACC 59.190 40.000 0.00 0.00 43.53 5.01
2356 4111 6.630071 AGGTTGGTGTATTATTCATTTGCAC 58.370 36.000 0.00 0.00 0.00 4.57
2357 4112 6.849085 AGGTTGGTGTATTATTCATTTGCA 57.151 33.333 0.00 0.00 0.00 4.08
2358 4113 7.547227 AGAAGGTTGGTGTATTATTCATTTGC 58.453 34.615 0.00 0.00 0.00 3.68
2359 4114 8.960591 AGAGAAGGTTGGTGTATTATTCATTTG 58.039 33.333 0.00 0.00 0.00 2.32
2365 4120 9.975218 ACATTTAGAGAAGGTTGGTGTATTATT 57.025 29.630 0.00 0.00 0.00 1.40
2366 4121 9.396022 CACATTTAGAGAAGGTTGGTGTATTAT 57.604 33.333 0.00 0.00 0.00 1.28
2367 4122 8.380099 ACACATTTAGAGAAGGTTGGTGTATTA 58.620 33.333 0.00 0.00 35.43 0.98
2368 4123 7.231467 ACACATTTAGAGAAGGTTGGTGTATT 58.769 34.615 0.00 0.00 35.43 1.89
2369 4124 6.779860 ACACATTTAGAGAAGGTTGGTGTAT 58.220 36.000 0.00 0.00 35.43 2.29
2370 4125 6.182507 ACACATTTAGAGAAGGTTGGTGTA 57.817 37.500 0.00 0.00 35.43 2.90
2371 4126 5.048846 ACACATTTAGAGAAGGTTGGTGT 57.951 39.130 0.00 0.00 32.62 4.16
2372 4127 6.464222 TCTACACATTTAGAGAAGGTTGGTG 58.536 40.000 0.00 0.00 0.00 4.17
2373 4128 6.681729 TCTACACATTTAGAGAAGGTTGGT 57.318 37.500 0.00 0.00 0.00 3.67
2374 4129 7.979444 TTTCTACACATTTAGAGAAGGTTGG 57.021 36.000 0.00 0.00 29.67 3.77
2375 4130 9.831737 CATTTTCTACACATTTAGAGAAGGTTG 57.168 33.333 0.00 0.00 28.65 3.77
2376 4131 9.793259 TCATTTTCTACACATTTAGAGAAGGTT 57.207 29.630 0.00 0.00 30.21 3.50
2377 4132 9.965902 ATCATTTTCTACACATTTAGAGAAGGT 57.034 29.630 0.00 0.00 30.21 3.50
2395 4150 8.043710 TGTAGGAGGAGAAGAGAAATCATTTTC 58.956 37.037 0.00 0.00 41.34 2.29
2396 4151 7.922382 TGTAGGAGGAGAAGAGAAATCATTTT 58.078 34.615 0.00 0.00 0.00 1.82
2397 4152 7.502060 TGTAGGAGGAGAAGAGAAATCATTT 57.498 36.000 0.00 0.00 0.00 2.32
2398 4153 7.688918 ATGTAGGAGGAGAAGAGAAATCATT 57.311 36.000 0.00 0.00 0.00 2.57
2399 4154 8.971032 ATATGTAGGAGGAGAAGAGAAATCAT 57.029 34.615 0.00 0.00 0.00 2.45
2400 4155 9.303116 GTATATGTAGGAGGAGAAGAGAAATCA 57.697 37.037 0.00 0.00 0.00 2.57
2401 4156 9.303116 TGTATATGTAGGAGGAGAAGAGAAATC 57.697 37.037 0.00 0.00 0.00 2.17
2402 4157 9.661954 TTGTATATGTAGGAGGAGAAGAGAAAT 57.338 33.333 0.00 0.00 0.00 2.17
2403 4158 8.915036 GTTGTATATGTAGGAGGAGAAGAGAAA 58.085 37.037 0.00 0.00 0.00 2.52
2404 4159 7.506261 GGTTGTATATGTAGGAGGAGAAGAGAA 59.494 40.741 0.00 0.00 0.00 2.87
2405 4160 7.005296 GGTTGTATATGTAGGAGGAGAAGAGA 58.995 42.308 0.00 0.00 0.00 3.10
2406 4161 6.778069 TGGTTGTATATGTAGGAGGAGAAGAG 59.222 42.308 0.00 0.00 0.00 2.85
2407 4162 6.550108 GTGGTTGTATATGTAGGAGGAGAAGA 59.450 42.308 0.00 0.00 0.00 2.87
2408 4163 6.551601 AGTGGTTGTATATGTAGGAGGAGAAG 59.448 42.308 0.00 0.00 0.00 2.85
2409 4164 6.441222 AGTGGTTGTATATGTAGGAGGAGAA 58.559 40.000 0.00 0.00 0.00 2.87
2410 4165 6.027025 AGTGGTTGTATATGTAGGAGGAGA 57.973 41.667 0.00 0.00 0.00 3.71
2411 4166 6.239345 GGAAGTGGTTGTATATGTAGGAGGAG 60.239 46.154 0.00 0.00 0.00 3.69
2412 4167 5.601313 GGAAGTGGTTGTATATGTAGGAGGA 59.399 44.000 0.00 0.00 0.00 3.71
2413 4168 5.365605 TGGAAGTGGTTGTATATGTAGGAGG 59.634 44.000 0.00 0.00 0.00 4.30
2414 4169 6.479972 TGGAAGTGGTTGTATATGTAGGAG 57.520 41.667 0.00 0.00 0.00 3.69
2415 4170 6.844388 AGATGGAAGTGGTTGTATATGTAGGA 59.156 38.462 0.00 0.00 0.00 2.94
2416 4171 7.067496 AGATGGAAGTGGTTGTATATGTAGG 57.933 40.000 0.00 0.00 0.00 3.18
2417 4172 8.204160 TGAAGATGGAAGTGGTTGTATATGTAG 58.796 37.037 0.00 0.00 0.00 2.74
2418 4173 7.985184 GTGAAGATGGAAGTGGTTGTATATGTA 59.015 37.037 0.00 0.00 0.00 2.29
2419 4174 6.823689 GTGAAGATGGAAGTGGTTGTATATGT 59.176 38.462 0.00 0.00 0.00 2.29
2420 4175 7.050377 AGTGAAGATGGAAGTGGTTGTATATG 58.950 38.462 0.00 0.00 0.00 1.78
2421 4176 7.200434 AGTGAAGATGGAAGTGGTTGTATAT 57.800 36.000 0.00 0.00 0.00 0.86
2422 4177 6.620877 AGTGAAGATGGAAGTGGTTGTATA 57.379 37.500 0.00 0.00 0.00 1.47
2423 4178 5.491982 GAGTGAAGATGGAAGTGGTTGTAT 58.508 41.667 0.00 0.00 0.00 2.29
2424 4179 4.560716 CGAGTGAAGATGGAAGTGGTTGTA 60.561 45.833 0.00 0.00 0.00 2.41
2425 4180 3.744660 GAGTGAAGATGGAAGTGGTTGT 58.255 45.455 0.00 0.00 0.00 3.32
2426 4181 2.738846 CGAGTGAAGATGGAAGTGGTTG 59.261 50.000 0.00 0.00 0.00 3.77
2427 4182 2.632996 TCGAGTGAAGATGGAAGTGGTT 59.367 45.455 0.00 0.00 0.00 3.67
2428 4183 2.232452 CTCGAGTGAAGATGGAAGTGGT 59.768 50.000 3.62 0.00 0.00 4.16
2429 4184 2.886081 CTCGAGTGAAGATGGAAGTGG 58.114 52.381 3.62 0.00 0.00 4.00
2430 4185 2.266554 GCTCGAGTGAAGATGGAAGTG 58.733 52.381 15.13 0.00 0.00 3.16
2431 4186 1.895798 TGCTCGAGTGAAGATGGAAGT 59.104 47.619 15.13 0.00 0.00 3.01
2432 4187 2.662006 TGCTCGAGTGAAGATGGAAG 57.338 50.000 15.13 0.00 0.00 3.46
2433 4188 4.944619 ATATGCTCGAGTGAAGATGGAA 57.055 40.909 15.13 0.00 0.00 3.53
2434 4189 6.596309 ATTATATGCTCGAGTGAAGATGGA 57.404 37.500 15.13 0.00 0.00 3.41
2459 4214 9.533831 ACTAGTATGTGGATGTGATCATGTATA 57.466 33.333 0.00 0.00 34.06 1.47
2460 4215 8.309656 CACTAGTATGTGGATGTGATCATGTAT 58.690 37.037 0.00 0.00 34.06 2.29
2461 4216 7.661040 CACTAGTATGTGGATGTGATCATGTA 58.339 38.462 0.00 0.00 34.06 2.29
2462 4217 6.519382 CACTAGTATGTGGATGTGATCATGT 58.481 40.000 0.00 0.00 34.06 3.21
2463 4218 5.407691 GCACTAGTATGTGGATGTGATCATG 59.592 44.000 0.00 0.00 38.31 3.07
2464 4219 5.070847 TGCACTAGTATGTGGATGTGATCAT 59.929 40.000 0.00 0.00 38.31 2.45
2465 4220 4.405358 TGCACTAGTATGTGGATGTGATCA 59.595 41.667 0.00 0.00 38.31 2.92
2466 4221 4.747108 GTGCACTAGTATGTGGATGTGATC 59.253 45.833 10.32 0.00 40.21 2.92
2467 4222 4.406972 AGTGCACTAGTATGTGGATGTGAT 59.593 41.667 20.16 0.00 40.21 3.06
2468 4223 3.769300 AGTGCACTAGTATGTGGATGTGA 59.231 43.478 20.16 0.00 40.21 3.58
2469 4224 4.128925 AGTGCACTAGTATGTGGATGTG 57.871 45.455 20.16 0.00 40.21 3.21
2470 4225 5.521906 CTAGTGCACTAGTATGTGGATGT 57.478 43.478 35.77 8.07 40.21 3.06
2481 4236 6.482698 TGCAAAGTTTGGACTAGTGCACTAG 61.483 44.000 39.87 39.87 45.07 2.57
2482 4237 3.813166 GCAAAGTTTGGACTAGTGCACTA 59.187 43.478 24.63 24.63 42.39 2.74
2483 4238 2.618709 GCAAAGTTTGGACTAGTGCACT 59.381 45.455 25.12 25.12 42.39 4.40
2484 4239 2.357637 TGCAAAGTTTGGACTAGTGCAC 59.642 45.455 17.54 9.40 45.07 4.57
2485 4240 2.357637 GTGCAAAGTTTGGACTAGTGCA 59.642 45.455 27.26 13.71 46.46 4.57
2486 4241 3.000082 GTGCAAAGTTTGGACTAGTGC 58.000 47.619 27.26 7.56 46.85 4.40
2493 4248 3.766591 TGAAGGAAAGTGCAAAGTTTGGA 59.233 39.130 17.11 11.84 0.00 3.53
2494 4249 4.122143 TGAAGGAAAGTGCAAAGTTTGG 57.878 40.909 17.11 0.00 0.00 3.28
2495 4250 6.044682 AGAATGAAGGAAAGTGCAAAGTTTG 58.955 36.000 11.41 11.41 0.00 2.93
2496 4251 6.225981 AGAATGAAGGAAAGTGCAAAGTTT 57.774 33.333 0.00 0.00 0.00 2.66
2497 4252 5.859205 AGAATGAAGGAAAGTGCAAAGTT 57.141 34.783 0.00 0.00 0.00 2.66
2498 4253 6.064717 ACTAGAATGAAGGAAAGTGCAAAGT 58.935 36.000 0.00 0.00 0.00 2.66
2499 4254 6.566197 ACTAGAATGAAGGAAAGTGCAAAG 57.434 37.500 0.00 0.00 0.00 2.77
2500 4255 7.500892 TGTTACTAGAATGAAGGAAAGTGCAAA 59.499 33.333 0.00 0.00 0.00 3.68
2501 4256 6.995686 TGTTACTAGAATGAAGGAAAGTGCAA 59.004 34.615 0.00 0.00 0.00 4.08
2502 4257 6.530120 TGTTACTAGAATGAAGGAAAGTGCA 58.470 36.000 0.00 0.00 0.00 4.57
2503 4258 7.617041 ATGTTACTAGAATGAAGGAAAGTGC 57.383 36.000 0.00 0.00 0.00 4.40
2504 4259 7.965107 GCAATGTTACTAGAATGAAGGAAAGTG 59.035 37.037 0.00 0.00 0.00 3.16
2505 4260 7.665559 TGCAATGTTACTAGAATGAAGGAAAGT 59.334 33.333 0.00 0.00 0.00 2.66
2506 4261 8.044060 TGCAATGTTACTAGAATGAAGGAAAG 57.956 34.615 0.00 0.00 0.00 2.62
2507 4262 7.665559 ACTGCAATGTTACTAGAATGAAGGAAA 59.334 33.333 0.00 0.00 0.00 3.13
2508 4263 7.168219 ACTGCAATGTTACTAGAATGAAGGAA 58.832 34.615 0.00 0.00 0.00 3.36
2509 4264 6.711277 ACTGCAATGTTACTAGAATGAAGGA 58.289 36.000 0.00 0.00 0.00 3.36
2510 4265 6.992063 ACTGCAATGTTACTAGAATGAAGG 57.008 37.500 0.00 0.00 0.00 3.46
2513 4268 9.244799 CGTTATACTGCAATGTTACTAGAATGA 57.755 33.333 0.00 0.00 0.00 2.57
2514 4269 9.031360 ACGTTATACTGCAATGTTACTAGAATG 57.969 33.333 0.00 0.00 0.00 2.67
2517 4272 9.726232 CTTACGTTATACTGCAATGTTACTAGA 57.274 33.333 0.00 0.00 0.00 2.43
2518 4273 8.477709 GCTTACGTTATACTGCAATGTTACTAG 58.522 37.037 0.00 0.00 0.00 2.57
2519 4274 7.975058 TGCTTACGTTATACTGCAATGTTACTA 59.025 33.333 0.00 0.00 0.00 1.82
2520 4275 6.814644 TGCTTACGTTATACTGCAATGTTACT 59.185 34.615 0.00 0.00 0.00 2.24
2521 4276 6.898189 GTGCTTACGTTATACTGCAATGTTAC 59.102 38.462 0.00 0.00 32.10 2.50
2522 4277 6.237622 CGTGCTTACGTTATACTGCAATGTTA 60.238 38.462 0.00 0.00 32.10 2.41
2523 4278 5.445407 CGTGCTTACGTTATACTGCAATGTT 60.445 40.000 0.00 0.00 32.10 2.71
2524 4279 4.032445 CGTGCTTACGTTATACTGCAATGT 59.968 41.667 0.00 0.00 32.10 2.71
2525 4280 4.032445 ACGTGCTTACGTTATACTGCAATG 59.968 41.667 0.00 0.00 44.63 2.82
2526 4281 4.032445 CACGTGCTTACGTTATACTGCAAT 59.968 41.667 0.82 0.00 44.63 3.56
2527 4282 3.365520 CACGTGCTTACGTTATACTGCAA 59.634 43.478 0.82 0.00 44.63 4.08
2528 4283 2.918600 CACGTGCTTACGTTATACTGCA 59.081 45.455 0.82 0.00 44.63 4.41
2529 4284 3.173599 TCACGTGCTTACGTTATACTGC 58.826 45.455 11.67 0.00 44.63 4.40
2530 4285 3.239941 GCTCACGTGCTTACGTTATACTG 59.760 47.826 11.67 0.00 44.63 2.74
2531 4286 3.128242 AGCTCACGTGCTTACGTTATACT 59.872 43.478 11.67 0.00 44.63 2.12
2532 4287 3.239941 CAGCTCACGTGCTTACGTTATAC 59.760 47.826 11.67 0.00 44.63 1.47
2533 4288 3.431856 CAGCTCACGTGCTTACGTTATA 58.568 45.455 11.67 0.00 44.63 0.98
2534 4289 2.259618 CAGCTCACGTGCTTACGTTAT 58.740 47.619 11.67 0.00 44.63 1.89
2535 4290 1.667756 CCAGCTCACGTGCTTACGTTA 60.668 52.381 11.67 0.00 44.63 3.18
2536 4291 0.944311 CCAGCTCACGTGCTTACGTT 60.944 55.000 11.67 0.00 44.63 3.99
2538 4293 2.094659 CCCAGCTCACGTGCTTACG 61.095 63.158 11.67 0.00 41.98 3.18
2539 4294 0.108138 ATCCCAGCTCACGTGCTTAC 60.108 55.000 11.67 0.00 41.98 2.34
2540 4295 1.409064 CTATCCCAGCTCACGTGCTTA 59.591 52.381 11.67 0.00 41.98 3.09
2541 4296 0.176680 CTATCCCAGCTCACGTGCTT 59.823 55.000 11.67 0.00 41.98 3.91
2542 4297 0.972983 ACTATCCCAGCTCACGTGCT 60.973 55.000 11.67 1.80 45.18 4.40
2543 4298 0.807667 CACTATCCCAGCTCACGTGC 60.808 60.000 11.67 0.00 0.00 5.34
2544 4299 0.532573 ACACTATCCCAGCTCACGTG 59.467 55.000 9.94 9.94 0.00 4.49
2545 4300 1.204941 GAACACTATCCCAGCTCACGT 59.795 52.381 0.00 0.00 0.00 4.49
2546 4301 1.204704 TGAACACTATCCCAGCTCACG 59.795 52.381 0.00 0.00 0.00 4.35
2547 4302 3.334583 TTGAACACTATCCCAGCTCAC 57.665 47.619 0.00 0.00 0.00 3.51
2548 4303 4.072131 GTTTTGAACACTATCCCAGCTCA 58.928 43.478 0.00 0.00 0.00 4.26
2549 4304 3.440522 GGTTTTGAACACTATCCCAGCTC 59.559 47.826 0.00 0.00 0.00 4.09
2550 4305 3.421844 GGTTTTGAACACTATCCCAGCT 58.578 45.455 0.00 0.00 0.00 4.24
2551 4306 2.161609 CGGTTTTGAACACTATCCCAGC 59.838 50.000 0.00 0.00 0.00 4.85
2552 4307 3.670625 TCGGTTTTGAACACTATCCCAG 58.329 45.455 0.00 0.00 0.00 4.45
2553 4308 3.773418 TCGGTTTTGAACACTATCCCA 57.227 42.857 0.00 0.00 0.00 4.37
2554 4309 5.399013 CATTTCGGTTTTGAACACTATCCC 58.601 41.667 0.00 0.00 0.00 3.85
2555 4310 5.399013 CCATTTCGGTTTTGAACACTATCC 58.601 41.667 0.00 0.00 0.00 2.59
2570 4325 6.693315 ACACCTTTATATCAACCATTTCGG 57.307 37.500 0.00 0.00 42.50 4.30
2571 4326 7.713507 TCCTACACCTTTATATCAACCATTTCG 59.286 37.037 0.00 0.00 0.00 3.46
2572 4327 8.974060 TCCTACACCTTTATATCAACCATTTC 57.026 34.615 0.00 0.00 0.00 2.17
2573 4328 9.936329 ATTCCTACACCTTTATATCAACCATTT 57.064 29.630 0.00 0.00 0.00 2.32
2576 4331 8.656806 CCTATTCCTACACCTTTATATCAACCA 58.343 37.037 0.00 0.00 0.00 3.67
2577 4332 8.877195 TCCTATTCCTACACCTTTATATCAACC 58.123 37.037 0.00 0.00 0.00 3.77
2578 4333 9.930693 CTCCTATTCCTACACCTTTATATCAAC 57.069 37.037 0.00 0.00 0.00 3.18
2579 4334 9.892444 TCTCCTATTCCTACACCTTTATATCAA 57.108 33.333 0.00 0.00 0.00 2.57
2580 4335 9.310449 GTCTCCTATTCCTACACCTTTATATCA 57.690 37.037 0.00 0.00 0.00 2.15
2581 4336 9.310449 TGTCTCCTATTCCTACACCTTTATATC 57.690 37.037 0.00 0.00 0.00 1.63
2582 4337 9.845214 ATGTCTCCTATTCCTACACCTTTATAT 57.155 33.333 0.00 0.00 0.00 0.86
2583 4338 9.310449 GATGTCTCCTATTCCTACACCTTTATA 57.690 37.037 0.00 0.00 0.00 0.98
2584 4339 7.789831 TGATGTCTCCTATTCCTACACCTTTAT 59.210 37.037 0.00 0.00 0.00 1.40
2585 4340 7.130099 TGATGTCTCCTATTCCTACACCTTTA 58.870 38.462 0.00 0.00 0.00 1.85
2586 4341 5.964477 TGATGTCTCCTATTCCTACACCTTT 59.036 40.000 0.00 0.00 0.00 3.11
2587 4342 5.529289 TGATGTCTCCTATTCCTACACCTT 58.471 41.667 0.00 0.00 0.00 3.50
2588 4343 5.144100 CTGATGTCTCCTATTCCTACACCT 58.856 45.833 0.00 0.00 0.00 4.00
2589 4344 4.282195 CCTGATGTCTCCTATTCCTACACC 59.718 50.000 0.00 0.00 0.00 4.16
2590 4345 5.141182 TCCTGATGTCTCCTATTCCTACAC 58.859 45.833 0.00 0.00 0.00 2.90
2591 4346 5.403558 TCCTGATGTCTCCTATTCCTACA 57.596 43.478 0.00 0.00 0.00 2.74
2592 4347 6.551601 TCTTTCCTGATGTCTCCTATTCCTAC 59.448 42.308 0.00 0.00 0.00 3.18
2593 4348 6.683537 TCTTTCCTGATGTCTCCTATTCCTA 58.316 40.000 0.00 0.00 0.00 2.94
2594 4349 5.533112 TCTTTCCTGATGTCTCCTATTCCT 58.467 41.667 0.00 0.00 0.00 3.36
2595 4350 5.878406 TCTTTCCTGATGTCTCCTATTCC 57.122 43.478 0.00 0.00 0.00 3.01
2596 4351 5.757808 GCTTCTTTCCTGATGTCTCCTATTC 59.242 44.000 0.00 0.00 0.00 1.75
2597 4352 5.190528 TGCTTCTTTCCTGATGTCTCCTATT 59.809 40.000 0.00 0.00 0.00 1.73
2598 4353 4.718774 TGCTTCTTTCCTGATGTCTCCTAT 59.281 41.667 0.00 0.00 0.00 2.57
2599 4354 4.096681 TGCTTCTTTCCTGATGTCTCCTA 58.903 43.478 0.00 0.00 0.00 2.94
2600 4355 2.909006 TGCTTCTTTCCTGATGTCTCCT 59.091 45.455 0.00 0.00 0.00 3.69
2601 4356 3.269178 CTGCTTCTTTCCTGATGTCTCC 58.731 50.000 0.00 0.00 0.00 3.71
2602 4357 2.677337 GCTGCTTCTTTCCTGATGTCTC 59.323 50.000 0.00 0.00 0.00 3.36
2603 4358 2.617532 GGCTGCTTCTTTCCTGATGTCT 60.618 50.000 0.00 0.00 0.00 3.41
2604 4359 1.742268 GGCTGCTTCTTTCCTGATGTC 59.258 52.381 0.00 0.00 0.00 3.06
2605 4360 1.353694 AGGCTGCTTCTTTCCTGATGT 59.646 47.619 0.00 0.00 0.00 3.06
2606 4361 2.125773 AGGCTGCTTCTTTCCTGATG 57.874 50.000 0.00 0.00 0.00 3.07
2607 4362 2.843113 AGTAGGCTGCTTCTTTCCTGAT 59.157 45.455 0.00 0.00 0.00 2.90
2608 4363 2.234908 GAGTAGGCTGCTTCTTTCCTGA 59.765 50.000 6.55 0.00 0.00 3.86
2609 4364 2.235898 AGAGTAGGCTGCTTCTTTCCTG 59.764 50.000 6.55 0.00 0.00 3.86
2610 4365 2.499693 GAGAGTAGGCTGCTTCTTTCCT 59.500 50.000 6.55 0.00 0.00 3.36
2611 4366 2.737039 CGAGAGTAGGCTGCTTCTTTCC 60.737 54.545 6.55 0.00 0.00 3.13
2612 4367 2.094442 ACGAGAGTAGGCTGCTTCTTTC 60.094 50.000 6.55 2.40 46.88 2.62
2613 4368 1.896465 ACGAGAGTAGGCTGCTTCTTT 59.104 47.619 6.55 0.00 46.88 2.52
2614 4369 1.551452 ACGAGAGTAGGCTGCTTCTT 58.449 50.000 6.55 0.00 46.88 2.52
2615 4370 3.274601 ACGAGAGTAGGCTGCTTCT 57.725 52.632 6.55 5.46 46.88 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.