Multiple sequence alignment - TraesCS6D01G089300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G089300 chr6D 100.000 6145 0 0 1 6145 54270667 54264523 0.000000e+00 11348.0
1 TraesCS6D01G089300 chr6D 97.436 195 4 1 5766 5959 54264717 54264523 1.280000e-86 331.0
2 TraesCS6D01G089300 chr6D 97.436 195 4 1 5951 6145 54264902 54264709 1.280000e-86 331.0
3 TraesCS6D01G089300 chr6D 87.940 199 4 3 1 179 54356955 54356757 3.730000e-52 217.0
4 TraesCS6D01G089300 chr6D 87.629 194 9 1 1 179 282217679 282217486 1.740000e-50 211.0
5 TraesCS6D01G089300 chr6D 85.946 185 17 7 1 180 331198087 331198267 8.130000e-44 189.0
6 TraesCS6D01G089300 chr6B 93.753 3938 191 24 222 4135 116602208 116606114 0.000000e+00 5858.0
7 TraesCS6D01G089300 chr6B 95.563 1848 45 11 4134 5959 116606200 116608032 0.000000e+00 2924.0
8 TraesCS6D01G089300 chr6B 86.594 552 62 7 2703 3250 70031859 70031316 3.170000e-167 599.0
9 TraesCS6D01G089300 chr6B 87.309 457 50 7 2703 3156 70049204 70048753 3.280000e-142 516.0
10 TraesCS6D01G089300 chr6B 87.090 457 50 8 2703 3156 70047536 70047086 5.500000e-140 508.0
11 TraesCS6D01G089300 chr6B 96.923 195 5 1 5951 6145 116607839 116608032 5.940000e-85 326.0
12 TraesCS6D01G089300 chr6B 93.333 45 2 1 4001 4044 530560462 530560418 1.430000e-06 65.8
13 TraesCS6D01G089300 chr6A 95.401 3327 112 13 815 4135 60999834 61003125 0.000000e+00 5258.0
14 TraesCS6D01G089300 chr6A 96.073 1655 53 7 4134 5784 61003213 61004859 0.000000e+00 2686.0
15 TraesCS6D01G089300 chr3D 88.385 551 56 7 2703 3250 421789671 421789126 0.000000e+00 656.0
16 TraesCS6D01G089300 chr3D 89.691 194 5 1 1 179 177834933 177834740 3.700000e-57 233.0
17 TraesCS6D01G089300 chr3D 88.462 182 14 4 1 179 302529869 302530046 4.830000e-51 213.0
18 TraesCS6D01G089300 chr3D 85.388 219 10 11 1 199 360606701 360606485 2.240000e-49 207.0
19 TraesCS6D01G089300 chr3D 100.000 35 0 0 3996 4030 410521835 410521801 1.430000e-06 65.8
20 TraesCS6D01G089300 chr7A 83.082 597 57 15 3316 3894 726290642 726290072 2.560000e-138 503.0
21 TraesCS6D01G089300 chr7A 82.412 597 61 16 3316 3894 726241628 726241058 1.200000e-131 481.0
22 TraesCS6D01G089300 chr7A 82.381 210 16 13 1 193 252017171 252016966 4.930000e-36 163.0
23 TraesCS6D01G089300 chr3B 86.779 416 50 4 3481 3896 811777960 811777550 5.610000e-125 459.0
24 TraesCS6D01G089300 chr3B 90.196 51 4 1 3992 4041 823579221 823579271 1.430000e-06 65.8
25 TraesCS6D01G089300 chr3B 84.375 64 8 1 4001 4064 201045568 201045629 1.850000e-05 62.1
26 TraesCS6D01G089300 chr1B 90.169 356 30 3 3540 3894 615488437 615488788 5.610000e-125 459.0
27 TraesCS6D01G089300 chr1B 82.160 213 16 13 1 192 266737531 266737742 4.930000e-36 163.0
28 TraesCS6D01G089300 chr1B 90.541 74 3 2 3316 3385 615488254 615488327 1.820000e-15 95.3
29 TraesCS6D01G089300 chr1B 89.091 55 4 2 3988 4041 407306589 407306642 3.980000e-07 67.6
30 TraesCS6D01G089300 chr2D 92.265 181 13 1 1 180 517641319 517641499 7.900000e-64 255.0
31 TraesCS6D01G089300 chr2D 93.333 45 2 1 4001 4044 169042549 169042505 1.430000e-06 65.8
32 TraesCS6D01G089300 chr5B 89.011 182 13 7 1 179 127220270 127220447 1.040000e-52 219.0
33 TraesCS6D01G089300 chr7D 87.179 195 9 2 1 180 299250688 299250881 2.240000e-49 207.0
34 TraesCS6D01G089300 chr7D 85.106 141 16 4 2739 2879 507234398 507234263 8.310000e-29 139.0
35 TraesCS6D01G089300 chr7D 92.157 51 2 2 3994 4042 151326436 151326486 3.070000e-08 71.3
36 TraesCS6D01G089300 chr7D 97.368 38 0 1 4005 4041 141359996 141360033 5.140000e-06 63.9
37 TraesCS6D01G089300 chr4D 85.572 201 12 7 1 186 183380947 183381145 1.750000e-45 195.0
38 TraesCS6D01G089300 chr4D 87.500 48 6 0 3982 4029 258896981 258896934 8.600000e-04 56.5
39 TraesCS6D01G089300 chr4D 100.000 28 0 0 4041 4068 463695035 463695062 1.100000e-02 52.8
40 TraesCS6D01G089300 chr2A 86.413 184 18 3 1 178 393208591 393208409 1.750000e-45 195.0
41 TraesCS6D01G089300 chr5A 86.029 136 14 4 2744 2879 617225874 617225744 2.310000e-29 141.0
42 TraesCS6D01G089300 chr5D 85.106 141 16 4 2739 2879 90693414 90693549 8.310000e-29 139.0
43 TraesCS6D01G089300 chr5D 85.106 141 16 4 2739 2879 117888555 117888420 8.310000e-29 139.0
44 TraesCS6D01G089300 chr5D 91.429 70 4 2 4001 4069 217656230 217656298 1.820000e-15 95.3
45 TraesCS6D01G089300 chr5D 97.368 38 1 0 4000 4037 530069291 530069328 1.430000e-06 65.8
46 TraesCS6D01G089300 chrUn 87.302 63 6 2 3988 4048 70193183 70193245 3.070000e-08 71.3
47 TraesCS6D01G089300 chr3A 89.655 58 3 3 3994 4048 621664436 621664493 3.070000e-08 71.3
48 TraesCS6D01G089300 chr3A 90.476 42 2 2 4041 4081 750505598 750505558 3.000000e-03 54.7
49 TraesCS6D01G089300 chr1D 89.091 55 4 2 3988 4041 301641574 301641627 3.980000e-07 67.6
50 TraesCS6D01G089300 chr1D 97.059 34 0 1 4037 4070 477288459 477288491 8.600000e-04 56.5
51 TraesCS6D01G089300 chr7B 97.297 37 1 0 4001 4037 106602245 106602281 5.140000e-06 63.9
52 TraesCS6D01G089300 chr1A 97.222 36 1 0 3996 4031 511307696 511307661 1.850000e-05 62.1
53 TraesCS6D01G089300 chr1A 97.143 35 1 0 4000 4034 14074757 14074791 6.650000e-05 60.2
54 TraesCS6D01G089300 chr4B 100.000 29 0 0 4008 4036 14004306 14004334 3.000000e-03 54.7
55 TraesCS6D01G089300 chr2B 92.105 38 2 1 4037 4074 46806242 46806206 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G089300 chr6D 54264523 54270667 6144 True 11348.00 11348 100.0000 1 6145 1 chr6D.!!$R1 6144
1 TraesCS6D01G089300 chr6B 116602208 116608032 5824 False 3036.00 5858 95.4130 222 6145 3 chr6B.!!$F1 5923
2 TraesCS6D01G089300 chr6B 70031316 70031859 543 True 599.00 599 86.5940 2703 3250 1 chr6B.!!$R1 547
3 TraesCS6D01G089300 chr6B 70047086 70049204 2118 True 512.00 516 87.1995 2703 3156 2 chr6B.!!$R3 453
4 TraesCS6D01G089300 chr6A 60999834 61004859 5025 False 3972.00 5258 95.7370 815 5784 2 chr6A.!!$F1 4969
5 TraesCS6D01G089300 chr3D 421789126 421789671 545 True 656.00 656 88.3850 2703 3250 1 chr3D.!!$R4 547
6 TraesCS6D01G089300 chr7A 726290072 726290642 570 True 503.00 503 83.0820 3316 3894 1 chr7A.!!$R3 578
7 TraesCS6D01G089300 chr7A 726241058 726241628 570 True 481.00 481 82.4120 3316 3894 1 chr7A.!!$R2 578
8 TraesCS6D01G089300 chr1B 615488254 615488788 534 False 277.15 459 90.3550 3316 3894 2 chr1B.!!$F3 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.110056 CGTGCTTTCGCTTCATTGCT 60.110 50.000 0.00 0.0 36.97 3.91 F
538 548 0.461548 TGCTAGCTGAATCTCGTGGG 59.538 55.000 17.23 0.0 0.00 4.61 F
539 549 0.461961 GCTAGCTGAATCTCGTGGGT 59.538 55.000 7.70 0.0 0.00 4.51 F
1651 1687 0.614812 TGCAAGTCTGATGCCTGCTA 59.385 50.000 1.15 0.0 43.16 3.49 F
1849 1889 1.186917 TAGCGACGGGGGAACTCAAA 61.187 55.000 0.00 0.0 0.00 2.69 F
2486 2528 1.202651 AGTACTCTGTTTGTTGCGGCT 60.203 47.619 0.00 0.0 0.00 5.52 F
2922 2967 1.357420 TGCCCACCATTGTAAGTCCAT 59.643 47.619 0.00 0.0 0.00 3.41 F
4606 6430 1.353694 AGGACAGCCTGCTCTGATTTT 59.646 47.619 7.91 0.0 44.90 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 1463 1.583709 GCTAGCGCCGCAAATTGTC 60.584 57.895 13.36 0.0 0.00 3.18 R
1567 1603 2.093394 CCATGGATGCCAATGAAAGCAA 60.093 45.455 5.56 0.0 43.36 3.91 R
2486 2528 2.432146 CTCACCATAGCAGGCTCTAACA 59.568 50.000 0.00 0.0 0.00 2.41 R
3142 4854 6.531021 ACAGTAGCACCAAGTAAGTAAACAT 58.469 36.000 0.00 0.0 0.00 2.71 R
3444 5175 6.943146 TGGAAACATTAGGTTGCACTACATAA 59.057 34.615 0.00 0.0 40.35 1.90 R
3937 5669 1.620822 AGTTCAAACCCTCATGGCAC 58.379 50.000 0.00 0.0 37.83 5.01 R
4803 6627 0.600782 TTGGAACGCGGTGGTAGAAC 60.601 55.000 12.47 0.0 0.00 3.01 R
6056 7905 1.813786 TGTCATCATGCACACACATGG 59.186 47.619 0.00 0.0 46.08 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.390225 ACTGCCTAGCTGCCTATAGT 57.610 50.000 0.00 0.00 0.00 2.12
21 22 2.243810 ACTGCCTAGCTGCCTATAGTC 58.756 52.381 0.00 0.00 0.00 2.59
22 23 2.158385 ACTGCCTAGCTGCCTATAGTCT 60.158 50.000 0.00 0.00 0.00 3.24
23 24 2.896685 CTGCCTAGCTGCCTATAGTCTT 59.103 50.000 0.00 0.00 0.00 3.01
24 25 2.894126 TGCCTAGCTGCCTATAGTCTTC 59.106 50.000 0.00 0.00 0.00 2.87
25 26 2.094957 GCCTAGCTGCCTATAGTCTTCG 60.095 54.545 0.00 0.00 0.00 3.79
26 27 3.150767 CCTAGCTGCCTATAGTCTTCGT 58.849 50.000 0.00 0.00 0.00 3.85
27 28 3.057876 CCTAGCTGCCTATAGTCTTCGTG 60.058 52.174 0.00 0.00 0.00 4.35
28 29 1.067821 AGCTGCCTATAGTCTTCGTGC 59.932 52.381 0.00 0.00 0.00 5.34
29 30 1.067821 GCTGCCTATAGTCTTCGTGCT 59.932 52.381 0.00 0.00 0.00 4.40
30 31 2.482142 GCTGCCTATAGTCTTCGTGCTT 60.482 50.000 0.00 0.00 0.00 3.91
31 32 3.786635 CTGCCTATAGTCTTCGTGCTTT 58.213 45.455 0.00 0.00 0.00 3.51
32 33 3.782046 TGCCTATAGTCTTCGTGCTTTC 58.218 45.455 0.00 0.00 0.00 2.62
33 34 2.789893 GCCTATAGTCTTCGTGCTTTCG 59.210 50.000 0.00 0.00 0.00 3.46
34 35 2.789893 CCTATAGTCTTCGTGCTTTCGC 59.210 50.000 0.00 0.00 0.00 4.70
35 36 2.656560 ATAGTCTTCGTGCTTTCGCT 57.343 45.000 0.00 0.00 36.97 4.93
36 37 2.433868 TAGTCTTCGTGCTTTCGCTT 57.566 45.000 0.00 0.00 36.97 4.68
37 38 1.140816 AGTCTTCGTGCTTTCGCTTC 58.859 50.000 0.00 0.00 36.97 3.86
38 39 0.859232 GTCTTCGTGCTTTCGCTTCA 59.141 50.000 0.00 0.00 36.97 3.02
39 40 1.461127 GTCTTCGTGCTTTCGCTTCAT 59.539 47.619 0.00 0.00 36.97 2.57
40 41 2.096218 GTCTTCGTGCTTTCGCTTCATT 60.096 45.455 0.00 0.00 36.97 2.57
41 42 2.096268 TCTTCGTGCTTTCGCTTCATTG 60.096 45.455 0.00 0.00 36.97 2.82
42 43 0.110238 TCGTGCTTTCGCTTCATTGC 60.110 50.000 0.00 0.00 36.97 3.56
43 44 0.110056 CGTGCTTTCGCTTCATTGCT 60.110 50.000 0.00 0.00 36.97 3.91
44 45 1.664016 CGTGCTTTCGCTTCATTGCTT 60.664 47.619 0.00 0.00 36.97 3.91
45 46 2.412716 CGTGCTTTCGCTTCATTGCTTA 60.413 45.455 0.00 0.00 36.97 3.09
46 47 2.911102 GTGCTTTCGCTTCATTGCTTAC 59.089 45.455 0.00 0.00 36.97 2.34
47 48 2.813754 TGCTTTCGCTTCATTGCTTACT 59.186 40.909 0.00 0.00 36.97 2.24
48 49 3.253188 TGCTTTCGCTTCATTGCTTACTT 59.747 39.130 0.00 0.00 36.97 2.24
49 50 4.454161 TGCTTTCGCTTCATTGCTTACTTA 59.546 37.500 0.00 0.00 36.97 2.24
50 51 5.049060 TGCTTTCGCTTCATTGCTTACTTAA 60.049 36.000 0.00 0.00 36.97 1.85
51 52 5.283953 GCTTTCGCTTCATTGCTTACTTAAC 59.716 40.000 0.00 0.00 0.00 2.01
52 53 6.554334 TTTCGCTTCATTGCTTACTTAACT 57.446 33.333 0.00 0.00 0.00 2.24
53 54 7.623506 GCTTTCGCTTCATTGCTTACTTAACTA 60.624 37.037 0.00 0.00 0.00 2.24
54 55 7.843490 TTCGCTTCATTGCTTACTTAACTAT 57.157 32.000 0.00 0.00 0.00 2.12
55 56 7.234187 TCGCTTCATTGCTTACTTAACTATG 57.766 36.000 0.00 0.00 0.00 2.23
56 57 6.257849 TCGCTTCATTGCTTACTTAACTATGG 59.742 38.462 0.00 0.00 0.00 2.74
57 58 6.202226 GCTTCATTGCTTACTTAACTATGGC 58.798 40.000 0.00 0.00 0.00 4.40
58 59 6.038714 GCTTCATTGCTTACTTAACTATGGCT 59.961 38.462 0.00 0.00 0.00 4.75
59 60 7.415653 GCTTCATTGCTTACTTAACTATGGCTT 60.416 37.037 0.00 0.00 0.00 4.35
60 61 7.320443 TCATTGCTTACTTAACTATGGCTTG 57.680 36.000 0.00 0.00 0.00 4.01
61 62 6.884295 TCATTGCTTACTTAACTATGGCTTGT 59.116 34.615 0.00 0.00 0.00 3.16
62 63 6.737254 TTGCTTACTTAACTATGGCTTGTC 57.263 37.500 0.00 0.00 0.00 3.18
63 64 6.049955 TGCTTACTTAACTATGGCTTGTCT 57.950 37.500 0.00 0.00 0.00 3.41
64 65 7.177832 TGCTTACTTAACTATGGCTTGTCTA 57.822 36.000 0.00 0.00 0.00 2.59
65 66 7.265673 TGCTTACTTAACTATGGCTTGTCTAG 58.734 38.462 0.00 0.00 0.00 2.43
66 67 7.093465 TGCTTACTTAACTATGGCTTGTCTAGT 60.093 37.037 0.00 0.00 0.00 2.57
67 68 7.222999 GCTTACTTAACTATGGCTTGTCTAGTG 59.777 40.741 0.00 0.00 0.00 2.74
68 69 6.607004 ACTTAACTATGGCTTGTCTAGTGT 57.393 37.500 0.00 0.00 0.00 3.55
69 70 7.713734 ACTTAACTATGGCTTGTCTAGTGTA 57.286 36.000 0.00 0.00 0.00 2.90
70 71 7.773149 ACTTAACTATGGCTTGTCTAGTGTAG 58.227 38.462 0.00 0.00 0.00 2.74
71 72 7.396623 ACTTAACTATGGCTTGTCTAGTGTAGT 59.603 37.037 0.00 0.00 0.00 2.73
72 73 5.838531 ACTATGGCTTGTCTAGTGTAGTC 57.161 43.478 0.00 0.00 0.00 2.59
73 74 5.511363 ACTATGGCTTGTCTAGTGTAGTCT 58.489 41.667 0.00 0.00 0.00 3.24
74 75 6.660800 ACTATGGCTTGTCTAGTGTAGTCTA 58.339 40.000 0.00 0.00 0.00 2.59
75 76 5.838531 ATGGCTTGTCTAGTGTAGTCTAC 57.161 43.478 2.81 2.81 0.00 2.59
76 77 4.015084 TGGCTTGTCTAGTGTAGTCTACC 58.985 47.826 7.56 0.00 0.00 3.18
77 78 4.263816 TGGCTTGTCTAGTGTAGTCTACCT 60.264 45.833 7.56 6.85 0.00 3.08
78 79 4.705991 GGCTTGTCTAGTGTAGTCTACCTT 59.294 45.833 7.56 0.00 0.00 3.50
79 80 5.163632 GGCTTGTCTAGTGTAGTCTACCTTC 60.164 48.000 7.56 0.00 0.00 3.46
80 81 5.163632 GCTTGTCTAGTGTAGTCTACCTTCC 60.164 48.000 7.56 0.00 0.00 3.46
81 82 4.511527 TGTCTAGTGTAGTCTACCTTCCG 58.488 47.826 7.56 0.00 0.00 4.30
82 83 3.312146 GTCTAGTGTAGTCTACCTTCCGC 59.688 52.174 7.56 0.00 0.00 5.54
83 84 2.510928 AGTGTAGTCTACCTTCCGCT 57.489 50.000 7.56 0.00 0.00 5.52
84 85 2.093106 AGTGTAGTCTACCTTCCGCTG 58.907 52.381 7.56 0.00 0.00 5.18
85 86 0.815734 TGTAGTCTACCTTCCGCTGC 59.184 55.000 7.56 0.00 0.00 5.25
86 87 0.815734 GTAGTCTACCTTCCGCTGCA 59.184 55.000 0.00 0.00 0.00 4.41
87 88 1.409427 GTAGTCTACCTTCCGCTGCAT 59.591 52.381 0.00 0.00 0.00 3.96
88 89 1.776662 AGTCTACCTTCCGCTGCATA 58.223 50.000 0.00 0.00 0.00 3.14
89 90 2.320781 AGTCTACCTTCCGCTGCATAT 58.679 47.619 0.00 0.00 0.00 1.78
90 91 2.297597 AGTCTACCTTCCGCTGCATATC 59.702 50.000 0.00 0.00 0.00 1.63
91 92 2.035961 GTCTACCTTCCGCTGCATATCA 59.964 50.000 0.00 0.00 0.00 2.15
92 93 2.698274 TCTACCTTCCGCTGCATATCAA 59.302 45.455 0.00 0.00 0.00 2.57
93 94 2.645838 ACCTTCCGCTGCATATCAAT 57.354 45.000 0.00 0.00 0.00 2.57
94 95 3.769739 ACCTTCCGCTGCATATCAATA 57.230 42.857 0.00 0.00 0.00 1.90
95 96 3.668447 ACCTTCCGCTGCATATCAATAG 58.332 45.455 0.00 0.00 0.00 1.73
96 97 3.005554 CCTTCCGCTGCATATCAATAGG 58.994 50.000 0.00 0.00 0.00 2.57
97 98 3.557898 CCTTCCGCTGCATATCAATAGGT 60.558 47.826 0.00 0.00 0.00 3.08
98 99 3.769739 TCCGCTGCATATCAATAGGTT 57.230 42.857 0.00 0.00 0.00 3.50
99 100 3.664107 TCCGCTGCATATCAATAGGTTC 58.336 45.455 0.00 0.00 0.00 3.62
100 101 3.070878 TCCGCTGCATATCAATAGGTTCA 59.929 43.478 0.00 0.00 0.00 3.18
101 102 4.005650 CCGCTGCATATCAATAGGTTCAT 58.994 43.478 0.00 0.00 0.00 2.57
102 103 4.456911 CCGCTGCATATCAATAGGTTCATT 59.543 41.667 0.00 0.00 0.00 2.57
103 104 5.048504 CCGCTGCATATCAATAGGTTCATTT 60.049 40.000 0.00 0.00 0.00 2.32
104 105 6.441274 CGCTGCATATCAATAGGTTCATTTT 58.559 36.000 0.00 0.00 0.00 1.82
105 106 6.919662 CGCTGCATATCAATAGGTTCATTTTT 59.080 34.615 0.00 0.00 0.00 1.94
106 107 8.075574 CGCTGCATATCAATAGGTTCATTTTTA 58.924 33.333 0.00 0.00 0.00 1.52
107 108 9.918630 GCTGCATATCAATAGGTTCATTTTTAT 57.081 29.630 0.00 0.00 0.00 1.40
130 131 9.698309 TTATTGTTTGTGTTTTGAAGACTTTCA 57.302 25.926 0.00 0.00 41.44 2.69
131 132 8.776376 ATTGTTTGTGTTTTGAAGACTTTCAT 57.224 26.923 0.00 0.00 42.60 2.57
132 133 9.868277 ATTGTTTGTGTTTTGAAGACTTTCATA 57.132 25.926 0.00 0.00 42.60 2.15
133 134 9.698309 TTGTTTGTGTTTTGAAGACTTTCATAA 57.302 25.926 0.00 0.00 42.60 1.90
134 135 9.698309 TGTTTGTGTTTTGAAGACTTTCATAAA 57.302 25.926 0.00 0.00 42.60 1.40
140 141 8.751335 TGTTTTGAAGACTTTCATAAAAATCGC 58.249 29.630 0.00 0.00 42.60 4.58
141 142 7.867445 TTTGAAGACTTTCATAAAAATCGCC 57.133 32.000 0.00 0.00 42.60 5.54
142 143 6.817765 TGAAGACTTTCATAAAAATCGCCT 57.182 33.333 0.00 0.00 38.37 5.52
143 144 7.915293 TGAAGACTTTCATAAAAATCGCCTA 57.085 32.000 0.00 0.00 38.37 3.93
144 145 8.506168 TGAAGACTTTCATAAAAATCGCCTAT 57.494 30.769 0.00 0.00 38.37 2.57
145 146 8.956426 TGAAGACTTTCATAAAAATCGCCTATT 58.044 29.630 0.00 0.00 38.37 1.73
146 147 9.439537 GAAGACTTTCATAAAAATCGCCTATTC 57.560 33.333 0.00 0.00 33.38 1.75
147 148 8.506168 AGACTTTCATAAAAATCGCCTATTCA 57.494 30.769 0.00 0.00 0.00 2.57
148 149 8.398665 AGACTTTCATAAAAATCGCCTATTCAC 58.601 33.333 0.00 0.00 0.00 3.18
149 150 7.480810 ACTTTCATAAAAATCGCCTATTCACC 58.519 34.615 0.00 0.00 0.00 4.02
150 151 6.385649 TTCATAAAAATCGCCTATTCACCC 57.614 37.500 0.00 0.00 0.00 4.61
151 152 4.825085 TCATAAAAATCGCCTATTCACCCC 59.175 41.667 0.00 0.00 0.00 4.95
152 153 2.067365 AAAATCGCCTATTCACCCCC 57.933 50.000 0.00 0.00 0.00 5.40
180 181 5.646577 AGTCGATAACTAGCACTTTCACT 57.353 39.130 0.00 0.00 36.07 3.41
181 182 6.754702 AGTCGATAACTAGCACTTTCACTA 57.245 37.500 0.00 0.00 36.07 2.74
182 183 7.336161 AGTCGATAACTAGCACTTTCACTAT 57.664 36.000 0.00 0.00 36.07 2.12
183 184 7.419204 AGTCGATAACTAGCACTTTCACTATC 58.581 38.462 0.00 0.00 36.07 2.08
184 185 7.283580 AGTCGATAACTAGCACTTTCACTATCT 59.716 37.037 0.00 0.00 36.07 1.98
185 186 7.588488 GTCGATAACTAGCACTTTCACTATCTC 59.412 40.741 0.00 0.00 0.00 2.75
186 187 7.282450 TCGATAACTAGCACTTTCACTATCTCA 59.718 37.037 0.00 0.00 0.00 3.27
187 188 7.915923 CGATAACTAGCACTTTCACTATCTCAA 59.084 37.037 0.00 0.00 0.00 3.02
188 189 9.243637 GATAACTAGCACTTTCACTATCTCAAG 57.756 37.037 0.00 0.00 0.00 3.02
189 190 5.415221 ACTAGCACTTTCACTATCTCAAGC 58.585 41.667 0.00 0.00 0.00 4.01
190 191 4.277515 AGCACTTTCACTATCTCAAGCA 57.722 40.909 0.00 0.00 0.00 3.91
191 192 4.645535 AGCACTTTCACTATCTCAAGCAA 58.354 39.130 0.00 0.00 0.00 3.91
192 193 5.251764 AGCACTTTCACTATCTCAAGCAAT 58.748 37.500 0.00 0.00 0.00 3.56
193 194 6.409704 AGCACTTTCACTATCTCAAGCAATA 58.590 36.000 0.00 0.00 0.00 1.90
194 195 7.052873 AGCACTTTCACTATCTCAAGCAATAT 58.947 34.615 0.00 0.00 0.00 1.28
195 196 7.226325 AGCACTTTCACTATCTCAAGCAATATC 59.774 37.037 0.00 0.00 0.00 1.63
196 197 7.226325 GCACTTTCACTATCTCAAGCAATATCT 59.774 37.037 0.00 0.00 0.00 1.98
197 198 8.763356 CACTTTCACTATCTCAAGCAATATCTC 58.237 37.037 0.00 0.00 0.00 2.75
198 199 7.930865 ACTTTCACTATCTCAAGCAATATCTCC 59.069 37.037 0.00 0.00 0.00 3.71
199 200 6.983906 TCACTATCTCAAGCAATATCTCCA 57.016 37.500 0.00 0.00 0.00 3.86
200 201 6.753180 TCACTATCTCAAGCAATATCTCCAC 58.247 40.000 0.00 0.00 0.00 4.02
201 202 6.324770 TCACTATCTCAAGCAATATCTCCACA 59.675 38.462 0.00 0.00 0.00 4.17
202 203 6.988580 CACTATCTCAAGCAATATCTCCACAA 59.011 38.462 0.00 0.00 0.00 3.33
203 204 7.496920 CACTATCTCAAGCAATATCTCCACAAA 59.503 37.037 0.00 0.00 0.00 2.83
204 205 6.690194 ATCTCAAGCAATATCTCCACAAAC 57.310 37.500 0.00 0.00 0.00 2.93
205 206 4.943705 TCTCAAGCAATATCTCCACAAACC 59.056 41.667 0.00 0.00 0.00 3.27
206 207 4.661222 TCAAGCAATATCTCCACAAACCA 58.339 39.130 0.00 0.00 0.00 3.67
207 208 5.263599 TCAAGCAATATCTCCACAAACCAT 58.736 37.500 0.00 0.00 0.00 3.55
208 209 5.125900 TCAAGCAATATCTCCACAAACCATG 59.874 40.000 0.00 0.00 0.00 3.66
209 210 4.603131 AGCAATATCTCCACAAACCATGT 58.397 39.130 0.00 0.00 45.34 3.21
243 244 3.866703 TGGAACATAACCCACAGTTGA 57.133 42.857 0.00 0.00 39.67 3.18
280 283 8.001881 ACAATGAGTACACTTATCCTAGACAG 57.998 38.462 0.00 0.00 0.00 3.51
284 287 8.645814 TGAGTACACTTATCCTAGACAGAAAA 57.354 34.615 0.00 0.00 0.00 2.29
285 288 9.256228 TGAGTACACTTATCCTAGACAGAAAAT 57.744 33.333 0.00 0.00 0.00 1.82
303 306 9.793252 ACAGAAAATTTCAAGAATGGATTATCG 57.207 29.630 8.55 0.00 0.00 2.92
356 362 2.706890 TGAGCTTGGGATTTACGTTCC 58.293 47.619 0.00 0.00 0.00 3.62
374 381 2.476821 TCCCGAAGTCGAGTTTTGAAC 58.523 47.619 6.99 0.00 43.02 3.18
399 406 2.443887 CCTTCAACAAGGGCACAATG 57.556 50.000 0.00 0.00 45.27 2.82
421 428 3.866910 GCACTAATGTGGAAAATGCATGG 59.133 43.478 0.00 0.00 43.97 3.66
429 436 4.009675 GTGGAAAATGCATGGTCTAGTCA 58.990 43.478 0.00 0.00 0.00 3.41
437 444 1.959985 CATGGTCTAGTCAGAGGCGAT 59.040 52.381 0.00 0.00 0.00 4.58
441 448 2.750712 GGTCTAGTCAGAGGCGATATCC 59.249 54.545 0.00 0.00 0.00 2.59
443 450 3.189702 GTCTAGTCAGAGGCGATATCCAC 59.810 52.174 0.00 0.00 0.00 4.02
444 451 0.955178 AGTCAGAGGCGATATCCACG 59.045 55.000 0.00 0.00 0.00 4.94
449 456 1.485066 AGAGGCGATATCCACGGTTTT 59.515 47.619 0.00 0.00 0.00 2.43
452 459 0.942252 GCGATATCCACGGTTTTCCC 59.058 55.000 0.00 0.00 36.42 3.97
453 460 1.589803 CGATATCCACGGTTTTCCCC 58.410 55.000 0.00 0.00 36.42 4.81
454 461 1.812708 CGATATCCACGGTTTTCCCCC 60.813 57.143 0.00 0.00 36.42 5.40
478 488 5.335113 CGAAGAATCTGCATCCTTGTTGAAA 60.335 40.000 0.00 0.00 0.00 2.69
488 498 3.138304 TCCTTGTTGAAATCGTCACTGG 58.862 45.455 0.00 0.00 35.39 4.00
490 500 1.960417 TGTTGAAATCGTCACTGGCA 58.040 45.000 0.00 0.00 35.39 4.92
492 502 0.874390 TTGAAATCGTCACTGGCAGC 59.126 50.000 15.89 0.00 35.39 5.25
505 515 2.286872 CTGGCAGCAACCTCTCTAATG 58.713 52.381 0.00 0.00 0.00 1.90
506 516 1.065199 TGGCAGCAACCTCTCTAATGG 60.065 52.381 0.00 0.00 0.00 3.16
507 517 1.020437 GCAGCAACCTCTCTAATGGC 58.980 55.000 0.00 0.00 0.00 4.40
508 518 1.673168 CAGCAACCTCTCTAATGGCC 58.327 55.000 0.00 0.00 0.00 5.36
535 545 3.430098 CCTTCTTGCTAGCTGAATCTCGT 60.430 47.826 17.23 0.00 0.00 4.18
538 548 0.461548 TGCTAGCTGAATCTCGTGGG 59.538 55.000 17.23 0.00 0.00 4.61
539 549 0.461961 GCTAGCTGAATCTCGTGGGT 59.538 55.000 7.70 0.00 0.00 4.51
570 580 4.373116 GTCCGCCCGCTTCACTCA 62.373 66.667 0.00 0.00 0.00 3.41
596 606 1.490490 ACACCAGAAGCAGGTTGAGAA 59.510 47.619 0.00 0.00 37.23 2.87
614 624 0.616111 AACCTCACCTCTCCGCATCT 60.616 55.000 0.00 0.00 0.00 2.90
622 632 1.539388 CCTCTCCGCATCTAGCTACTG 59.461 57.143 0.00 0.00 42.61 2.74
623 633 2.226330 CTCTCCGCATCTAGCTACTGT 58.774 52.381 0.00 0.00 42.61 3.55
624 634 2.222886 TCTCCGCATCTAGCTACTGTC 58.777 52.381 0.00 0.00 42.61 3.51
642 652 1.079127 CGCACCACCTTCGATCCTT 60.079 57.895 0.00 0.00 0.00 3.36
652 662 1.961394 CTTCGATCCTTATCACCGGGA 59.039 52.381 6.32 0.00 31.93 5.14
654 664 1.144298 TCGATCCTTATCACCGGGAGA 59.856 52.381 6.32 3.32 32.28 3.71
668 678 1.075151 GGAGAGGGAGGGACGGAAT 60.075 63.158 0.00 0.00 0.00 3.01
670 680 1.203199 GGAGAGGGAGGGACGGAATAT 60.203 57.143 0.00 0.00 0.00 1.28
687 697 4.331168 GGAATATGAAGGATATGTCGCTGC 59.669 45.833 0.00 0.00 0.00 5.25
719 729 9.767684 CCAATGTTTGGTTTAGTTTTTCTTTTC 57.232 29.630 0.00 0.00 45.93 2.29
720 730 9.471742 CAATGTTTGGTTTAGTTTTTCTTTTCG 57.528 29.630 0.00 0.00 0.00 3.46
721 731 8.766000 ATGTTTGGTTTAGTTTTTCTTTTCGT 57.234 26.923 0.00 0.00 0.00 3.85
722 732 8.008902 TGTTTGGTTTAGTTTTTCTTTTCGTG 57.991 30.769 0.00 0.00 0.00 4.35
723 733 7.866393 TGTTTGGTTTAGTTTTTCTTTTCGTGA 59.134 29.630 0.00 0.00 0.00 4.35
724 734 8.701540 GTTTGGTTTAGTTTTTCTTTTCGTGAA 58.298 29.630 0.00 0.00 0.00 3.18
725 735 8.989653 TTGGTTTAGTTTTTCTTTTCGTGAAT 57.010 26.923 0.00 0.00 0.00 2.57
726 736 8.989653 TGGTTTAGTTTTTCTTTTCGTGAATT 57.010 26.923 0.00 0.00 0.00 2.17
727 737 9.425577 TGGTTTAGTTTTTCTTTTCGTGAATTT 57.574 25.926 0.00 0.00 0.00 1.82
728 738 9.683651 GGTTTAGTTTTTCTTTTCGTGAATTTG 57.316 29.630 0.00 0.00 0.00 2.32
729 739 9.683651 GTTTAGTTTTTCTTTTCGTGAATTTGG 57.316 29.630 0.00 0.00 0.00 3.28
730 740 8.989653 TTAGTTTTTCTTTTCGTGAATTTGGT 57.010 26.923 0.00 0.00 0.00 3.67
731 741 7.899178 AGTTTTTCTTTTCGTGAATTTGGTT 57.101 28.000 0.00 0.00 0.00 3.67
732 742 8.317891 AGTTTTTCTTTTCGTGAATTTGGTTT 57.682 26.923 0.00 0.00 0.00 3.27
733 743 8.779303 AGTTTTTCTTTTCGTGAATTTGGTTTT 58.221 25.926 0.00 0.00 0.00 2.43
734 744 9.388346 GTTTTTCTTTTCGTGAATTTGGTTTTT 57.612 25.926 0.00 0.00 0.00 1.94
735 745 9.600646 TTTTTCTTTTCGTGAATTTGGTTTTTC 57.399 25.926 0.00 0.00 0.00 2.29
736 746 8.541133 TTTCTTTTCGTGAATTTGGTTTTTCT 57.459 26.923 0.00 0.00 0.00 2.52
737 747 8.541133 TTCTTTTCGTGAATTTGGTTTTTCTT 57.459 26.923 0.00 0.00 0.00 2.52
738 748 8.541133 TCTTTTCGTGAATTTGGTTTTTCTTT 57.459 26.923 0.00 0.00 0.00 2.52
739 749 8.994170 TCTTTTCGTGAATTTGGTTTTTCTTTT 58.006 25.926 0.00 0.00 0.00 2.27
740 750 9.605955 CTTTTCGTGAATTTGGTTTTTCTTTTT 57.394 25.926 0.00 0.00 0.00 1.94
1062 1098 3.902086 GGGAGCCTAGTCGGTCGC 61.902 72.222 0.79 0.79 34.25 5.19
1193 1229 2.753029 GGTGCTTGAGGAGGCTGT 59.247 61.111 0.00 0.00 0.00 4.40
1427 1463 1.009078 TCGATTCTGCATTTCTGGCG 58.991 50.000 0.00 0.00 0.00 5.69
1431 1467 1.603456 TTCTGCATTTCTGGCGACAA 58.397 45.000 0.00 0.00 42.06 3.18
1481 1517 6.319658 GGTGGATTTTCACATGTAGATGATGT 59.680 38.462 6.90 0.00 39.27 3.06
1482 1518 7.498900 GGTGGATTTTCACATGTAGATGATGTA 59.501 37.037 6.90 0.00 39.27 2.29
1483 1519 8.554528 GTGGATTTTCACATGTAGATGATGTAG 58.445 37.037 6.90 0.00 37.57 2.74
1491 1527 9.586435 TCACATGTAGATGATGTAGTACTTTTG 57.414 33.333 6.90 0.00 32.64 2.44
1504 1540 8.932945 TGTAGTACTTTTGATGAGATAGCTTG 57.067 34.615 0.00 0.00 0.00 4.01
1567 1603 5.782893 TGGCTAATTTTGCTTACAAGTGT 57.217 34.783 2.97 0.00 37.04 3.55
1651 1687 0.614812 TGCAAGTCTGATGCCTGCTA 59.385 50.000 1.15 0.00 43.16 3.49
1685 1721 7.668469 TCCTAGACACATTGTAGAGTTCAAGTA 59.332 37.037 0.00 0.00 0.00 2.24
1686 1722 7.755822 CCTAGACACATTGTAGAGTTCAAGTAC 59.244 40.741 0.00 0.00 0.00 2.73
1705 1745 6.699575 AGTACCATGGCATTTACTCAATTC 57.300 37.500 13.04 0.00 0.00 2.17
1715 1755 9.421806 TGGCATTTACTCAATTCTTATTGTTTG 57.578 29.630 0.00 0.00 41.54 2.93
1725 1765 8.838365 TCAATTCTTATTGTTTGCAATTTGCTT 58.162 25.926 21.19 0.96 42.19 3.91
1759 1799 4.640771 TTGAAAGGCACTGATAGGTCTT 57.359 40.909 0.00 0.00 40.86 3.01
1769 1809 5.649831 GCACTGATAGGTCTTCTTTGGAATT 59.350 40.000 0.00 0.00 0.00 2.17
1776 1816 9.841880 GATAGGTCTTCTTTGGAATTTGTTTAC 57.158 33.333 0.00 0.00 0.00 2.01
1849 1889 1.186917 TAGCGACGGGGGAACTCAAA 61.187 55.000 0.00 0.00 0.00 2.69
2032 2072 2.024176 TAGCAGACCCTGAAGGAACA 57.976 50.000 0.00 0.00 39.89 3.18
2486 2528 1.202651 AGTACTCTGTTTGTTGCGGCT 60.203 47.619 0.00 0.00 0.00 5.52
2922 2967 1.357420 TGCCCACCATTGTAAGTCCAT 59.643 47.619 0.00 0.00 0.00 3.41
3142 4854 1.882912 ACTCGTCTTGCATGCAAAGA 58.117 45.000 31.37 26.43 35.33 2.52
3469 5200 4.720046 TGTAGTGCAACCTAATGTTTCCA 58.280 39.130 0.00 0.00 37.80 3.53
3535 5266 6.681368 GCAAAGTGTTTCCTGGGATGATATTC 60.681 42.308 0.00 0.00 0.00 1.75
3981 5713 8.508800 TTAATGTTACTGTTATTTGTTTGCCG 57.491 30.769 0.00 0.00 0.00 5.69
4009 5741 4.274794 ACCCAAATTTATTACCCCCTCC 57.725 45.455 0.00 0.00 0.00 4.30
4053 5785 9.971922 GCTGCTTTAGACAAATTAATATGGATT 57.028 29.630 0.00 0.00 0.00 3.01
4197 6021 8.494433 TCCTGCTAAGACAAATTTATGGTATCT 58.506 33.333 0.00 0.00 0.00 1.98
4345 6169 3.143728 GACGGTACAAACATGAAACCCT 58.856 45.455 0.00 0.00 0.00 4.34
4458 6282 6.096987 GGAGGGGAATTTCCTTATTGAAGTTC 59.903 42.308 14.95 0.00 39.13 3.01
4606 6430 1.353694 AGGACAGCCTGCTCTGATTTT 59.646 47.619 7.91 0.00 44.90 1.82
4803 6627 4.926238 GTCGCCACTATCTCCATTTCATAG 59.074 45.833 0.00 0.00 0.00 2.23
4835 6659 1.806542 CGTTCCAATCAAGGACACCTG 59.193 52.381 0.00 0.00 37.42 4.00
4836 6660 2.810400 CGTTCCAATCAAGGACACCTGT 60.810 50.000 0.00 0.00 37.42 4.00
4837 6661 3.222603 GTTCCAATCAAGGACACCTGTT 58.777 45.455 0.00 0.00 37.42 3.16
4838 6662 4.394729 GTTCCAATCAAGGACACCTGTTA 58.605 43.478 0.00 0.00 37.42 2.41
4839 6663 4.015872 TCCAATCAAGGACACCTGTTAC 57.984 45.455 0.00 0.00 32.13 2.50
4840 6664 3.081804 CCAATCAAGGACACCTGTTACC 58.918 50.000 0.00 0.00 32.13 2.85
4861 6691 3.305110 CCATTCAACTTGTTAACGCCAC 58.695 45.455 0.26 0.00 0.00 5.01
5012 6842 1.330829 GTTCTTAACGCAGCTATGGCC 59.669 52.381 0.00 0.00 39.73 5.36
5097 6927 1.290203 CATCGACAGCGGTAATGCTT 58.710 50.000 0.00 0.00 44.46 3.91
5149 6979 1.740718 GCACAAGGTGTCCTAGCTAGC 60.741 57.143 15.74 6.62 35.72 3.42
5217 7047 3.157087 GCCTTTCTCAACTGGGAAATCA 58.843 45.455 5.24 0.00 32.15 2.57
5281 7128 1.127567 TGTCACTGAGAAGGTGGGGG 61.128 60.000 0.00 0.00 35.61 5.40
5351 7198 7.285401 AGTGGCAAAGAAAGAGATTTGTCTTTA 59.715 33.333 3.00 0.00 45.00 1.85
5411 7258 1.406205 GCTCTCTTACCAGGCCTTGTC 60.406 57.143 13.76 0.00 0.00 3.18
6001 7850 9.866936 TTTTGTATTAAACTTGCGTAGTTGTAG 57.133 29.630 4.96 0.00 46.34 2.74
6002 7851 8.815141 TTGTATTAAACTTGCGTAGTTGTAGA 57.185 30.769 4.96 0.00 46.34 2.59
6003 7852 8.815141 TGTATTAAACTTGCGTAGTTGTAGAA 57.185 30.769 4.96 0.00 46.34 2.10
6004 7853 9.426837 TGTATTAAACTTGCGTAGTTGTAGAAT 57.573 29.630 4.96 5.94 46.34 2.40
6032 7881 9.571810 TTTATTGTAAATGAGTTGCATGCTTAG 57.428 29.630 20.33 0.00 37.28 2.18
6033 7882 6.573664 TTGTAAATGAGTTGCATGCTTAGT 57.426 33.333 20.33 9.78 37.28 2.24
6034 7883 5.941733 TGTAAATGAGTTGCATGCTTAGTG 58.058 37.500 20.33 0.00 37.28 2.74
6035 7884 3.498927 AATGAGTTGCATGCTTAGTGC 57.501 42.857 20.33 4.20 42.81 4.40
6059 7908 7.651027 CATCTTAAGATGGGTTTTTCTCCAT 57.349 36.000 30.19 0.00 46.09 3.41
6060 7909 7.486647 CATCTTAAGATGGGTTTTTCTCCATG 58.513 38.462 30.19 7.25 46.09 3.66
6061 7910 6.552008 TCTTAAGATGGGTTTTTCTCCATGT 58.448 36.000 0.00 0.00 43.20 3.21
6062 7911 6.434028 TCTTAAGATGGGTTTTTCTCCATGTG 59.566 38.462 0.00 0.00 43.20 3.21
6063 7912 4.118168 AGATGGGTTTTTCTCCATGTGT 57.882 40.909 0.00 0.00 43.20 3.72
6064 7913 3.828451 AGATGGGTTTTTCTCCATGTGTG 59.172 43.478 0.00 0.00 43.20 3.82
6065 7914 3.025322 TGGGTTTTTCTCCATGTGTGT 57.975 42.857 0.00 0.00 0.00 3.72
6066 7915 2.692557 TGGGTTTTTCTCCATGTGTGTG 59.307 45.455 0.00 0.00 0.00 3.82
6067 7916 2.545742 GGGTTTTTCTCCATGTGTGTGC 60.546 50.000 0.00 0.00 0.00 4.57
6068 7917 2.100584 GGTTTTTCTCCATGTGTGTGCA 59.899 45.455 0.00 0.00 0.00 4.57
6069 7918 3.243839 GGTTTTTCTCCATGTGTGTGCAT 60.244 43.478 0.00 0.00 0.00 3.96
6070 7919 3.646611 TTTTCTCCATGTGTGTGCATG 57.353 42.857 0.00 0.00 44.18 4.06
6071 7920 2.565046 TTCTCCATGTGTGTGCATGA 57.435 45.000 0.00 0.00 46.65 3.07
6072 7921 2.793288 TCTCCATGTGTGTGCATGAT 57.207 45.000 0.00 0.00 46.65 2.45
6073 7922 2.361789 TCTCCATGTGTGTGCATGATG 58.638 47.619 0.00 0.00 46.65 3.07
6074 7923 2.027007 TCTCCATGTGTGTGCATGATGA 60.027 45.455 0.00 3.20 46.65 2.92
6075 7924 2.086094 TCCATGTGTGTGCATGATGAC 58.914 47.619 0.00 0.00 46.65 3.06
6076 7925 1.813786 CCATGTGTGTGCATGATGACA 59.186 47.619 0.00 0.00 46.65 3.58
6077 7926 2.425668 CCATGTGTGTGCATGATGACAT 59.574 45.455 0.00 0.00 46.65 3.06
6093 7942 7.875327 TGATGACATGATGAGTTGATGAATT 57.125 32.000 0.00 0.00 0.00 2.17
6094 7943 7.703328 TGATGACATGATGAGTTGATGAATTG 58.297 34.615 0.00 0.00 0.00 2.32
6095 7944 7.554835 TGATGACATGATGAGTTGATGAATTGA 59.445 33.333 0.00 0.00 0.00 2.57
6096 7945 7.080353 TGACATGATGAGTTGATGAATTGAC 57.920 36.000 0.00 0.00 0.00 3.18
6097 7946 6.655848 TGACATGATGAGTTGATGAATTGACA 59.344 34.615 0.00 0.00 0.00 3.58
6098 7947 7.338449 TGACATGATGAGTTGATGAATTGACAT 59.662 33.333 0.00 0.00 0.00 3.06
6099 7948 8.741603 ACATGATGAGTTGATGAATTGACATA 57.258 30.769 0.00 0.00 0.00 2.29
6100 7949 8.837389 ACATGATGAGTTGATGAATTGACATAG 58.163 33.333 0.00 0.00 0.00 2.23
6101 7950 8.837389 CATGATGAGTTGATGAATTGACATAGT 58.163 33.333 0.00 0.00 0.00 2.12
6102 7951 8.797350 TGATGAGTTGATGAATTGACATAGTT 57.203 30.769 0.00 0.00 0.00 2.24
6103 7952 8.886719 TGATGAGTTGATGAATTGACATAGTTC 58.113 33.333 0.00 0.00 0.00 3.01
6104 7953 7.615582 TGAGTTGATGAATTGACATAGTTCC 57.384 36.000 0.00 0.00 0.00 3.62
6105 7954 7.167535 TGAGTTGATGAATTGACATAGTTCCA 58.832 34.615 0.00 0.00 0.00 3.53
6106 7955 7.830697 TGAGTTGATGAATTGACATAGTTCCAT 59.169 33.333 0.00 0.00 0.00 3.41
6107 7956 9.330063 GAGTTGATGAATTGACATAGTTCCATA 57.670 33.333 0.00 0.00 0.00 2.74
6108 7957 9.857656 AGTTGATGAATTGACATAGTTCCATAT 57.142 29.630 0.00 0.00 0.00 1.78
6111 7960 9.850198 TGATGAATTGACATAGTTCCATATTGA 57.150 29.630 0.00 0.00 0.00 2.57
6117 7966 9.911788 ATTGACATAGTTCCATATTGAAAGAGT 57.088 29.630 0.00 0.00 0.00 3.24
6118 7967 9.739276 TTGACATAGTTCCATATTGAAAGAGTT 57.261 29.630 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.094957 CGAAGACTATAGGCAGCTAGGC 60.095 54.545 8.68 0.00 44.61 3.93
5 6 3.057876 CACGAAGACTATAGGCAGCTAGG 60.058 52.174 8.68 0.00 0.00 3.02
6 7 3.610585 GCACGAAGACTATAGGCAGCTAG 60.611 52.174 8.68 0.00 0.00 3.42
7 8 2.293677 GCACGAAGACTATAGGCAGCTA 59.706 50.000 8.68 0.00 0.00 3.32
8 9 1.067821 GCACGAAGACTATAGGCAGCT 59.932 52.381 8.68 0.00 0.00 4.24
9 10 1.067821 AGCACGAAGACTATAGGCAGC 59.932 52.381 8.68 3.78 0.00 5.25
10 11 3.444703 AAGCACGAAGACTATAGGCAG 57.555 47.619 8.68 1.16 0.00 4.85
11 12 3.733988 CGAAAGCACGAAGACTATAGGCA 60.734 47.826 8.68 0.00 35.09 4.75
12 13 2.789893 CGAAAGCACGAAGACTATAGGC 59.210 50.000 4.43 0.00 35.09 3.93
28 29 6.603095 AGTTAAGTAAGCAATGAAGCGAAAG 58.397 36.000 0.00 0.00 40.15 2.62
29 30 6.554334 AGTTAAGTAAGCAATGAAGCGAAA 57.446 33.333 0.00 0.00 40.15 3.46
30 31 7.201609 CCATAGTTAAGTAAGCAATGAAGCGAA 60.202 37.037 0.00 0.00 40.15 4.70
31 32 6.257849 CCATAGTTAAGTAAGCAATGAAGCGA 59.742 38.462 0.00 0.00 40.15 4.93
32 33 6.422223 CCATAGTTAAGTAAGCAATGAAGCG 58.578 40.000 0.00 0.00 40.15 4.68
33 34 6.038714 AGCCATAGTTAAGTAAGCAATGAAGC 59.961 38.462 14.67 2.52 0.00 3.86
34 35 7.559590 AGCCATAGTTAAGTAAGCAATGAAG 57.440 36.000 14.67 0.00 0.00 3.02
35 36 7.393234 ACAAGCCATAGTTAAGTAAGCAATGAA 59.607 33.333 18.25 0.00 0.00 2.57
36 37 6.884295 ACAAGCCATAGTTAAGTAAGCAATGA 59.116 34.615 18.25 0.00 0.00 2.57
37 38 7.066284 AGACAAGCCATAGTTAAGTAAGCAATG 59.934 37.037 14.67 14.21 0.00 2.82
38 39 7.112779 AGACAAGCCATAGTTAAGTAAGCAAT 58.887 34.615 14.67 4.37 0.00 3.56
39 40 6.472887 AGACAAGCCATAGTTAAGTAAGCAA 58.527 36.000 14.67 0.00 0.00 3.91
40 41 6.049955 AGACAAGCCATAGTTAAGTAAGCA 57.950 37.500 14.67 0.00 0.00 3.91
41 42 7.222999 CACTAGACAAGCCATAGTTAAGTAAGC 59.777 40.741 0.00 7.35 0.00 3.09
42 43 8.251721 ACACTAGACAAGCCATAGTTAAGTAAG 58.748 37.037 0.00 0.00 0.00 2.34
43 44 8.130671 ACACTAGACAAGCCATAGTTAAGTAA 57.869 34.615 0.00 0.00 0.00 2.24
44 45 7.713734 ACACTAGACAAGCCATAGTTAAGTA 57.286 36.000 0.00 0.00 0.00 2.24
45 46 6.607004 ACACTAGACAAGCCATAGTTAAGT 57.393 37.500 0.00 0.00 0.00 2.24
46 47 7.773149 ACTACACTAGACAAGCCATAGTTAAG 58.227 38.462 0.00 0.00 0.00 1.85
47 48 7.614583 AGACTACACTAGACAAGCCATAGTTAA 59.385 37.037 0.00 0.00 0.00 2.01
48 49 7.117397 AGACTACACTAGACAAGCCATAGTTA 58.883 38.462 0.00 0.00 0.00 2.24
49 50 5.952947 AGACTACACTAGACAAGCCATAGTT 59.047 40.000 0.00 0.00 0.00 2.24
50 51 5.511363 AGACTACACTAGACAAGCCATAGT 58.489 41.667 0.00 0.00 0.00 2.12
51 52 6.016943 GGTAGACTACACTAGACAAGCCATAG 60.017 46.154 14.48 0.00 0.00 2.23
52 53 5.826737 GGTAGACTACACTAGACAAGCCATA 59.173 44.000 14.48 0.00 0.00 2.74
53 54 4.645588 GGTAGACTACACTAGACAAGCCAT 59.354 45.833 14.48 0.00 0.00 4.40
54 55 4.015084 GGTAGACTACACTAGACAAGCCA 58.985 47.826 14.48 0.00 0.00 4.75
55 56 4.271661 AGGTAGACTACACTAGACAAGCC 58.728 47.826 14.48 0.00 0.00 4.35
56 57 5.163632 GGAAGGTAGACTACACTAGACAAGC 60.164 48.000 14.48 0.00 0.00 4.01
57 58 5.064962 CGGAAGGTAGACTACACTAGACAAG 59.935 48.000 14.48 0.00 0.00 3.16
58 59 4.940046 CGGAAGGTAGACTACACTAGACAA 59.060 45.833 14.48 0.00 0.00 3.18
59 60 4.511527 CGGAAGGTAGACTACACTAGACA 58.488 47.826 14.48 0.00 0.00 3.41
60 61 3.312146 GCGGAAGGTAGACTACACTAGAC 59.688 52.174 14.48 0.00 0.00 2.59
61 62 3.199508 AGCGGAAGGTAGACTACACTAGA 59.800 47.826 14.48 0.00 41.99 2.43
62 63 3.312973 CAGCGGAAGGTAGACTACACTAG 59.687 52.174 14.48 3.11 41.81 2.57
63 64 3.276857 CAGCGGAAGGTAGACTACACTA 58.723 50.000 14.48 0.00 41.81 2.74
64 65 2.093106 CAGCGGAAGGTAGACTACACT 58.907 52.381 14.48 6.41 41.81 3.55
65 66 1.469423 GCAGCGGAAGGTAGACTACAC 60.469 57.143 14.48 4.28 41.81 2.90
66 67 0.815734 GCAGCGGAAGGTAGACTACA 59.184 55.000 14.48 0.00 41.81 2.74
67 68 0.815734 TGCAGCGGAAGGTAGACTAC 59.184 55.000 3.86 3.86 41.81 2.73
68 69 1.776662 ATGCAGCGGAAGGTAGACTA 58.223 50.000 0.00 0.00 41.81 2.59
69 70 1.776662 TATGCAGCGGAAGGTAGACT 58.223 50.000 0.00 0.00 41.81 3.24
70 71 2.035961 TGATATGCAGCGGAAGGTAGAC 59.964 50.000 0.00 0.00 41.81 2.59
71 72 2.316108 TGATATGCAGCGGAAGGTAGA 58.684 47.619 0.00 0.00 41.81 2.59
72 73 2.820059 TGATATGCAGCGGAAGGTAG 57.180 50.000 0.00 0.00 41.81 3.18
73 74 3.769739 ATTGATATGCAGCGGAAGGTA 57.230 42.857 0.00 0.00 41.81 3.08
74 75 2.645838 ATTGATATGCAGCGGAAGGT 57.354 45.000 0.00 0.00 46.81 3.50
75 76 3.005554 CCTATTGATATGCAGCGGAAGG 58.994 50.000 0.00 0.00 0.00 3.46
76 77 3.668447 ACCTATTGATATGCAGCGGAAG 58.332 45.455 0.00 0.00 0.00 3.46
77 78 3.769739 ACCTATTGATATGCAGCGGAA 57.230 42.857 0.00 0.00 0.00 4.30
78 79 3.070878 TGAACCTATTGATATGCAGCGGA 59.929 43.478 0.00 0.00 0.00 5.54
79 80 3.402110 TGAACCTATTGATATGCAGCGG 58.598 45.455 0.00 0.00 0.00 5.52
80 81 5.618056 AATGAACCTATTGATATGCAGCG 57.382 39.130 0.00 0.00 0.00 5.18
81 82 9.918630 ATAAAAATGAACCTATTGATATGCAGC 57.081 29.630 0.00 0.00 0.00 5.25
104 105 9.698309 TGAAAGTCTTCAAAACACAAACAATAA 57.302 25.926 0.00 0.00 38.65 1.40
105 106 9.868277 ATGAAAGTCTTCAAAACACAAACAATA 57.132 25.926 0.00 0.00 44.64 1.90
106 107 8.776376 ATGAAAGTCTTCAAAACACAAACAAT 57.224 26.923 0.00 0.00 44.64 2.71
107 108 9.698309 TTATGAAAGTCTTCAAAACACAAACAA 57.302 25.926 0.00 0.00 44.64 2.83
108 109 9.698309 TTTATGAAAGTCTTCAAAACACAAACA 57.302 25.926 0.00 0.00 44.64 2.83
114 115 8.751335 GCGATTTTTATGAAAGTCTTCAAAACA 58.249 29.630 4.37 0.00 44.64 2.83
115 116 8.214472 GGCGATTTTTATGAAAGTCTTCAAAAC 58.786 33.333 4.37 0.00 44.64 2.43
116 117 8.141268 AGGCGATTTTTATGAAAGTCTTCAAAA 58.859 29.630 4.37 0.00 44.64 2.44
117 118 7.657336 AGGCGATTTTTATGAAAGTCTTCAAA 58.343 30.769 4.37 0.00 44.64 2.69
118 119 7.214467 AGGCGATTTTTATGAAAGTCTTCAA 57.786 32.000 4.37 0.00 44.64 2.69
119 120 6.817765 AGGCGATTTTTATGAAAGTCTTCA 57.182 33.333 4.37 0.00 45.53 3.02
120 121 9.439537 GAATAGGCGATTTTTATGAAAGTCTTC 57.560 33.333 4.37 0.00 31.44 2.87
121 122 8.956426 TGAATAGGCGATTTTTATGAAAGTCTT 58.044 29.630 4.37 0.00 31.44 3.01
122 123 8.398665 GTGAATAGGCGATTTTTATGAAAGTCT 58.601 33.333 4.37 0.00 31.44 3.24
123 124 7.644157 GGTGAATAGGCGATTTTTATGAAAGTC 59.356 37.037 0.00 0.00 0.00 3.01
124 125 7.416326 GGGTGAATAGGCGATTTTTATGAAAGT 60.416 37.037 0.00 0.00 0.00 2.66
125 126 6.918022 GGGTGAATAGGCGATTTTTATGAAAG 59.082 38.462 0.00 0.00 0.00 2.62
126 127 6.183360 GGGGTGAATAGGCGATTTTTATGAAA 60.183 38.462 0.00 0.00 0.00 2.69
127 128 5.300792 GGGGTGAATAGGCGATTTTTATGAA 59.699 40.000 0.00 0.00 0.00 2.57
128 129 4.825085 GGGGTGAATAGGCGATTTTTATGA 59.175 41.667 0.00 0.00 0.00 2.15
129 130 4.022329 GGGGGTGAATAGGCGATTTTTATG 60.022 45.833 0.00 0.00 0.00 1.90
130 131 4.149598 GGGGGTGAATAGGCGATTTTTAT 58.850 43.478 0.00 0.00 0.00 1.40
131 132 3.558033 GGGGGTGAATAGGCGATTTTTA 58.442 45.455 0.00 0.00 0.00 1.52
132 133 2.384828 GGGGGTGAATAGGCGATTTTT 58.615 47.619 0.00 0.00 0.00 1.94
133 134 2.067365 GGGGGTGAATAGGCGATTTT 57.933 50.000 0.00 0.00 0.00 1.82
134 135 3.821306 GGGGGTGAATAGGCGATTT 57.179 52.632 0.00 0.00 0.00 2.17
157 158 6.754702 AGTGAAAGTGCTAGTTATCGACTA 57.245 37.500 0.00 0.00 39.86 2.59
158 159 5.646577 AGTGAAAGTGCTAGTTATCGACT 57.353 39.130 0.00 0.00 42.55 4.18
159 160 7.419204 AGATAGTGAAAGTGCTAGTTATCGAC 58.581 38.462 0.00 0.00 0.00 4.20
160 161 7.282450 TGAGATAGTGAAAGTGCTAGTTATCGA 59.718 37.037 0.00 0.00 0.00 3.59
161 162 7.418408 TGAGATAGTGAAAGTGCTAGTTATCG 58.582 38.462 0.00 0.00 0.00 2.92
162 163 9.243637 CTTGAGATAGTGAAAGTGCTAGTTATC 57.756 37.037 0.00 0.00 0.00 1.75
163 164 7.708752 GCTTGAGATAGTGAAAGTGCTAGTTAT 59.291 37.037 0.00 0.00 0.00 1.89
164 165 7.036220 GCTTGAGATAGTGAAAGTGCTAGTTA 58.964 38.462 0.00 0.00 0.00 2.24
165 166 5.872070 GCTTGAGATAGTGAAAGTGCTAGTT 59.128 40.000 0.00 0.00 0.00 2.24
166 167 5.047021 TGCTTGAGATAGTGAAAGTGCTAGT 60.047 40.000 0.00 0.00 0.00 2.57
167 168 5.414360 TGCTTGAGATAGTGAAAGTGCTAG 58.586 41.667 0.00 0.00 0.00 3.42
168 169 5.405935 TGCTTGAGATAGTGAAAGTGCTA 57.594 39.130 0.00 0.00 0.00 3.49
169 170 4.277515 TGCTTGAGATAGTGAAAGTGCT 57.722 40.909 0.00 0.00 0.00 4.40
170 171 5.557891 ATTGCTTGAGATAGTGAAAGTGC 57.442 39.130 0.00 0.00 0.00 4.40
171 172 8.659925 AGATATTGCTTGAGATAGTGAAAGTG 57.340 34.615 0.00 0.00 0.00 3.16
172 173 7.930865 GGAGATATTGCTTGAGATAGTGAAAGT 59.069 37.037 0.00 0.00 0.00 2.66
173 174 7.930325 TGGAGATATTGCTTGAGATAGTGAAAG 59.070 37.037 0.00 0.00 0.00 2.62
174 175 7.712639 GTGGAGATATTGCTTGAGATAGTGAAA 59.287 37.037 0.00 0.00 0.00 2.69
175 176 7.147672 TGTGGAGATATTGCTTGAGATAGTGAA 60.148 37.037 0.00 0.00 0.00 3.18
176 177 6.324770 TGTGGAGATATTGCTTGAGATAGTGA 59.675 38.462 0.00 0.00 0.00 3.41
177 178 6.519382 TGTGGAGATATTGCTTGAGATAGTG 58.481 40.000 0.00 0.00 0.00 2.74
178 179 6.737720 TGTGGAGATATTGCTTGAGATAGT 57.262 37.500 0.00 0.00 0.00 2.12
179 180 7.041508 GGTTTGTGGAGATATTGCTTGAGATAG 60.042 40.741 0.00 0.00 0.00 2.08
180 181 6.767902 GGTTTGTGGAGATATTGCTTGAGATA 59.232 38.462 0.00 0.00 0.00 1.98
181 182 5.591877 GGTTTGTGGAGATATTGCTTGAGAT 59.408 40.000 0.00 0.00 0.00 2.75
182 183 4.943705 GGTTTGTGGAGATATTGCTTGAGA 59.056 41.667 0.00 0.00 0.00 3.27
183 184 4.701651 TGGTTTGTGGAGATATTGCTTGAG 59.298 41.667 0.00 0.00 0.00 3.02
184 185 4.661222 TGGTTTGTGGAGATATTGCTTGA 58.339 39.130 0.00 0.00 0.00 3.02
185 186 5.105635 ACATGGTTTGTGGAGATATTGCTTG 60.106 40.000 0.00 0.00 37.11 4.01
186 187 5.018809 ACATGGTTTGTGGAGATATTGCTT 58.981 37.500 0.00 0.00 37.11 3.91
187 188 4.603131 ACATGGTTTGTGGAGATATTGCT 58.397 39.130 0.00 0.00 37.11 3.91
188 189 4.989279 ACATGGTTTGTGGAGATATTGC 57.011 40.909 0.00 0.00 37.11 3.56
213 214 2.624838 GGTTATGTTCCATGCCTCCATG 59.375 50.000 0.00 0.00 46.70 3.66
214 215 2.424812 GGGTTATGTTCCATGCCTCCAT 60.425 50.000 0.00 0.00 0.00 3.41
215 216 1.064017 GGGTTATGTTCCATGCCTCCA 60.064 52.381 0.00 0.00 0.00 3.86
216 217 1.064017 TGGGTTATGTTCCATGCCTCC 60.064 52.381 0.00 0.00 0.00 4.30
217 218 2.024414 GTGGGTTATGTTCCATGCCTC 58.976 52.381 0.00 0.00 35.28 4.70
218 219 1.357420 TGTGGGTTATGTTCCATGCCT 59.643 47.619 0.00 0.00 35.28 4.75
219 220 1.750778 CTGTGGGTTATGTTCCATGCC 59.249 52.381 0.00 0.00 35.28 4.40
220 221 2.446435 ACTGTGGGTTATGTTCCATGC 58.554 47.619 0.00 0.00 35.28 4.06
227 228 3.820467 CACATGTCAACTGTGGGTTATGT 59.180 43.478 0.00 0.00 40.23 2.29
233 234 3.148412 TCAATCACATGTCAACTGTGGG 58.852 45.455 0.00 0.00 43.33 4.61
241 242 6.709846 TGTACTCATTGTTCAATCACATGTCA 59.290 34.615 0.00 0.00 0.00 3.58
243 244 6.712095 AGTGTACTCATTGTTCAATCACATGT 59.288 34.615 13.01 0.00 0.00 3.21
251 252 9.031537 TCTAGGATAAGTGTACTCATTGTTCAA 57.968 33.333 0.00 0.00 0.00 2.69
252 253 8.467598 GTCTAGGATAAGTGTACTCATTGTTCA 58.532 37.037 0.00 0.00 0.00 3.18
254 255 8.362464 TGTCTAGGATAAGTGTACTCATTGTT 57.638 34.615 0.00 0.00 0.00 2.83
280 283 8.534778 GTGCGATAATCCATTCTTGAAATTTTC 58.465 33.333 2.05 2.05 0.00 2.29
284 287 5.277974 CCGTGCGATAATCCATTCTTGAAAT 60.278 40.000 0.00 0.00 0.00 2.17
285 288 4.035091 CCGTGCGATAATCCATTCTTGAAA 59.965 41.667 0.00 0.00 0.00 2.69
303 306 2.507547 TATCGACAACGCCCGTGC 60.508 61.111 0.00 0.00 39.58 5.34
313 316 5.155278 ACATTTGGTTGTACCTATCGACA 57.845 39.130 0.00 0.00 39.58 4.35
329 335 4.858692 CGTAAATCCCAAGCTCAACATTTG 59.141 41.667 0.00 0.00 0.00 2.32
356 362 2.121786 TCGTTCAAAACTCGACTTCGG 58.878 47.619 0.00 0.00 40.29 4.30
374 381 0.310854 GCCCTTGTTGAAGGTGTTCG 59.689 55.000 0.00 0.00 46.84 3.95
393 400 5.163933 GCATTTTCCACATTAGTGCATTGTG 60.164 40.000 12.42 12.42 44.53 3.33
398 405 4.496360 CATGCATTTTCCACATTAGTGCA 58.504 39.130 0.00 0.00 44.53 4.57
399 406 3.866910 CCATGCATTTTCCACATTAGTGC 59.133 43.478 0.00 0.00 44.53 4.40
405 412 4.603131 ACTAGACCATGCATTTTCCACAT 58.397 39.130 0.00 0.00 0.00 3.21
421 428 3.189702 GTGGATATCGCCTCTGACTAGAC 59.810 52.174 0.00 0.00 0.00 2.59
429 436 1.120530 AAACCGTGGATATCGCCTCT 58.879 50.000 0.00 0.00 0.00 3.69
437 444 1.603306 CGGGGGAAAACCGTGGATA 59.397 57.895 0.00 0.00 46.03 2.59
444 451 2.092323 CAGATTCTTCGGGGGAAAACC 58.908 52.381 0.00 0.00 39.11 3.27
449 456 0.469917 GATGCAGATTCTTCGGGGGA 59.530 55.000 0.00 0.00 0.00 4.81
452 459 1.945394 CAAGGATGCAGATTCTTCGGG 59.055 52.381 0.00 0.00 0.00 5.14
453 460 2.636830 ACAAGGATGCAGATTCTTCGG 58.363 47.619 0.00 0.00 0.00 4.30
454 461 3.686241 TCAACAAGGATGCAGATTCTTCG 59.314 43.478 0.00 0.00 0.00 3.79
456 463 6.600882 ATTTCAACAAGGATGCAGATTCTT 57.399 33.333 0.00 0.00 0.00 2.52
478 488 1.672356 GGTTGCTGCCAGTGACGAT 60.672 57.895 0.00 0.00 0.00 3.73
488 498 1.020437 GCCATTAGAGAGGTTGCTGC 58.980 55.000 0.00 0.00 0.00 5.25
490 500 0.179000 CGGCCATTAGAGAGGTTGCT 59.821 55.000 2.24 0.00 0.00 3.91
492 502 1.207089 TGTCGGCCATTAGAGAGGTTG 59.793 52.381 2.24 0.00 0.00 3.77
505 515 0.741221 CTAGCAAGAAGGTGTCGGCC 60.741 60.000 0.00 0.00 33.41 6.13
506 516 1.362406 GCTAGCAAGAAGGTGTCGGC 61.362 60.000 10.63 0.00 0.00 5.54
507 517 0.247736 AGCTAGCAAGAAGGTGTCGG 59.752 55.000 18.83 0.00 0.00 4.79
508 518 1.067565 TCAGCTAGCAAGAAGGTGTCG 60.068 52.381 18.83 0.00 41.92 4.35
538 548 1.079750 GGACGTTGGGCTCTCTCAC 60.080 63.158 0.00 0.00 0.00 3.51
539 549 2.636412 CGGACGTTGGGCTCTCTCA 61.636 63.158 0.00 0.00 0.00 3.27
570 580 3.018423 ACCTGCTTCTGGTGTTTTCTT 57.982 42.857 0.00 0.00 34.44 2.52
596 606 0.259065 TAGATGCGGAGAGGTGAGGT 59.741 55.000 0.00 0.00 0.00 3.85
614 624 0.611062 AGGTGGTGCGACAGTAGCTA 60.611 55.000 7.22 0.00 35.28 3.32
622 632 1.810030 GGATCGAAGGTGGTGCGAC 60.810 63.158 0.00 0.00 36.83 5.19
623 633 1.541310 AAGGATCGAAGGTGGTGCGA 61.541 55.000 0.00 0.00 38.51 5.10
624 634 0.174845 TAAGGATCGAAGGTGGTGCG 59.825 55.000 0.00 0.00 0.00 5.34
642 652 1.542175 CCTCCCTCTCCCGGTGATA 59.458 63.158 0.00 0.00 0.00 2.15
652 662 1.503784 TCATATTCCGTCCCTCCCTCT 59.496 52.381 0.00 0.00 0.00 3.69
654 664 2.330216 CTTCATATTCCGTCCCTCCCT 58.670 52.381 0.00 0.00 0.00 4.20
665 675 4.931601 TGCAGCGACATATCCTTCATATTC 59.068 41.667 0.00 0.00 0.00 1.75
668 678 3.862264 GCTGCAGCGACATATCCTTCATA 60.862 47.826 25.23 0.00 0.00 2.15
670 680 1.807755 GCTGCAGCGACATATCCTTCA 60.808 52.381 25.23 0.00 0.00 3.02
709 719 9.600646 GAAAAACCAAATTCACGAAAAGAAAAA 57.399 25.926 0.00 0.00 0.00 1.94
714 724 9.605955 AAAAAGAAAAACCAAATTCACGAAAAG 57.394 25.926 0.00 0.00 0.00 2.27
718 728 8.251721 TCCTAAAAAGAAAAACCAAATTCACGA 58.748 29.630 0.00 0.00 0.00 4.35
719 729 8.413899 TCCTAAAAAGAAAAACCAAATTCACG 57.586 30.769 0.00 0.00 0.00 4.35
825 860 2.885644 CCGCGTCTCCAACATCGG 60.886 66.667 4.92 0.00 37.33 4.18
832 867 2.501223 CTACAAAGCCCGCGTCTCCA 62.501 60.000 4.92 0.00 0.00 3.86
833 868 1.810030 CTACAAAGCCCGCGTCTCC 60.810 63.158 4.92 0.00 0.00 3.71
836 871 2.098831 GGTCTACAAAGCCCGCGTC 61.099 63.158 4.92 0.00 0.00 5.19
1179 1215 3.123620 CGCACAGCCTCCTCAAGC 61.124 66.667 0.00 0.00 0.00 4.01
1427 1463 1.583709 GCTAGCGCCGCAAATTGTC 60.584 57.895 13.36 0.00 0.00 3.18
1431 1467 3.264897 CTCGCTAGCGCCGCAAAT 61.265 61.111 31.82 0.00 39.59 2.32
1481 1517 8.749354 TGTCAAGCTATCTCATCAAAAGTACTA 58.251 33.333 0.00 0.00 0.00 1.82
1482 1518 7.615403 TGTCAAGCTATCTCATCAAAAGTACT 58.385 34.615 0.00 0.00 0.00 2.73
1483 1519 7.834068 TGTCAAGCTATCTCATCAAAAGTAC 57.166 36.000 0.00 0.00 0.00 2.73
1491 1527 5.659463 AGTGACTTGTCAAGCTATCTCATC 58.341 41.667 12.66 1.01 0.00 2.92
1567 1603 2.093394 CCATGGATGCCAATGAAAGCAA 60.093 45.455 5.56 0.00 43.36 3.91
1651 1687 5.489792 ACAATGTGTCTAGGACAACAGAT 57.510 39.130 1.77 0.00 44.49 2.90
1685 1721 7.902920 ATAAGAATTGAGTAAATGCCATGGT 57.097 32.000 14.67 0.00 0.00 3.55
1686 1722 8.199449 ACAATAAGAATTGAGTAAATGCCATGG 58.801 33.333 7.63 7.63 44.50 3.66
1715 1755 8.555361 TCAAATAAAACCTTACAAGCAAATTGC 58.445 29.630 10.41 10.41 43.15 3.56
1725 1765 7.068839 TCAGTGCCTTTCAAATAAAACCTTACA 59.931 33.333 0.00 0.00 0.00 2.41
1744 1784 3.055094 TCCAAAGAAGACCTATCAGTGCC 60.055 47.826 0.00 0.00 0.00 5.01
1759 1799 8.825745 GCAATGAAAGTAAACAAATTCCAAAGA 58.174 29.630 0.00 0.00 0.00 2.52
1769 1809 5.860941 TGGAAGGCAATGAAAGTAAACAA 57.139 34.783 0.00 0.00 0.00 2.83
1776 1816 6.651643 TGAAATTTGATGGAAGGCAATGAAAG 59.348 34.615 0.00 0.00 0.00 2.62
1783 1823 5.486735 AACATGAAATTTGATGGAAGGCA 57.513 34.783 19.75 0.00 0.00 4.75
1849 1889 3.374402 CTGGACACCGGCTCGTCT 61.374 66.667 16.24 0.00 32.57 4.18
1977 2017 2.508526 GAGGAAGAACATGCACAAGGT 58.491 47.619 0.00 0.00 0.00 3.50
2032 2072 5.248020 TGTTAAACCATTTGCTCCCATGATT 59.752 36.000 0.00 0.00 0.00 2.57
2355 2396 8.785329 AAAGTGGTGTTAATGAAATTGTTGTT 57.215 26.923 0.00 0.00 36.99 2.83
2486 2528 2.432146 CTCACCATAGCAGGCTCTAACA 59.568 50.000 0.00 0.00 0.00 2.41
2999 4711 6.761099 TTTCTAATATGCAAAGCCGGTTTA 57.239 33.333 3.14 0.00 0.00 2.01
3055 4767 8.566260 GGATTACAGATCAAATCAAAGAGATGG 58.434 37.037 13.95 0.00 36.96 3.51
3107 4819 7.414984 GCAAGACGAGTATACCACTAACTTACT 60.415 40.741 0.00 0.00 37.72 2.24
3142 4854 6.531021 ACAGTAGCACCAAGTAAGTAAACAT 58.469 36.000 0.00 0.00 0.00 2.71
3444 5175 6.943146 TGGAAACATTAGGTTGCACTACATAA 59.057 34.615 0.00 0.00 40.35 1.90
3664 5395 9.647918 ACTTCTCAACAGATACTCCTATAATCA 57.352 33.333 0.00 0.00 0.00 2.57
3937 5669 1.620822 AGTTCAAACCCTCATGGCAC 58.379 50.000 0.00 0.00 37.83 5.01
3981 5713 6.550854 GGGGGTAATAAATTTGGGTTAGGTAC 59.449 42.308 0.00 0.00 0.00 3.34
4009 5741 4.389992 AGCAGCGACAATTAATATGGATCG 59.610 41.667 0.00 0.00 0.00 3.69
4197 6021 2.185387 GCACCTTCCTCACCCTAAGTA 58.815 52.381 0.00 0.00 0.00 2.24
4386 6210 2.700371 CCTGCCATCTCCAGTATACACA 59.300 50.000 5.50 0.00 0.00 3.72
4458 6282 9.483062 GAACGTGAGAAAATTCAAGATATTCTG 57.517 33.333 0.00 0.00 30.89 3.02
4480 6304 6.455113 CCAAGGTATAACACAAATCTCGAACG 60.455 42.308 0.00 0.00 0.00 3.95
4606 6430 1.202879 ACCAAGTTCTCGGGCATTCAA 60.203 47.619 0.00 0.00 0.00 2.69
4683 6507 2.160822 TCACAGCAACTCTGAAGCTC 57.839 50.000 0.00 0.00 45.72 4.09
4786 6610 8.643324 GTGGTAGAACTATGAAATGGAGATAGT 58.357 37.037 0.00 0.00 34.96 2.12
4803 6627 0.600782 TTGGAACGCGGTGGTAGAAC 60.601 55.000 12.47 0.00 0.00 3.01
4835 6659 4.913345 GCGTTAACAAGTTGAATGGGTAAC 59.087 41.667 10.54 0.00 0.00 2.50
4836 6660 4.023021 GGCGTTAACAAGTTGAATGGGTAA 60.023 41.667 10.54 0.00 0.00 2.85
4837 6661 3.502979 GGCGTTAACAAGTTGAATGGGTA 59.497 43.478 10.54 0.00 0.00 3.69
4838 6662 2.295070 GGCGTTAACAAGTTGAATGGGT 59.705 45.455 10.54 0.00 0.00 4.51
4839 6663 2.294791 TGGCGTTAACAAGTTGAATGGG 59.705 45.455 10.54 0.00 0.00 4.00
4840 6664 3.305110 GTGGCGTTAACAAGTTGAATGG 58.695 45.455 10.54 0.00 0.00 3.16
4861 6691 6.408858 ACAACTATGCATAGAGAAAACACG 57.591 37.500 34.86 15.82 34.50 4.49
5012 6842 2.607187 CTACAGCCTAACAAGTGGTCG 58.393 52.381 0.00 0.00 0.00 4.79
5217 7047 0.470766 TTTCCAGTGGCGTGTAAGGT 59.529 50.000 3.51 0.00 0.00 3.50
5281 7128 4.722700 ACGACATGTGGGGCCTGC 62.723 66.667 12.78 0.00 0.00 4.85
5351 7198 4.142004 ACTCCGTGTCAACTGAGTAAACTT 60.142 41.667 1.68 0.00 45.69 2.66
6006 7855 9.571810 CTAAGCATGCAACTCATTTACAATAAA 57.428 29.630 21.98 0.00 31.79 1.40
6007 7856 8.739039 ACTAAGCATGCAACTCATTTACAATAA 58.261 29.630 21.98 0.00 31.79 1.40
6008 7857 8.183536 CACTAAGCATGCAACTCATTTACAATA 58.816 33.333 21.98 0.00 31.79 1.90
6009 7858 7.031372 CACTAAGCATGCAACTCATTTACAAT 58.969 34.615 21.98 0.00 31.79 2.71
6010 7859 6.380995 CACTAAGCATGCAACTCATTTACAA 58.619 36.000 21.98 0.00 31.79 2.41
6011 7860 5.619757 GCACTAAGCATGCAACTCATTTACA 60.620 40.000 21.98 0.00 44.79 2.41
6012 7861 4.795278 GCACTAAGCATGCAACTCATTTAC 59.205 41.667 21.98 0.00 44.79 2.01
6013 7862 4.985413 GCACTAAGCATGCAACTCATTTA 58.015 39.130 21.98 6.79 44.79 1.40
6014 7863 3.841643 GCACTAAGCATGCAACTCATTT 58.158 40.909 21.98 5.87 44.79 2.32
6015 7864 3.498927 GCACTAAGCATGCAACTCATT 57.501 42.857 21.98 6.65 44.79 2.57
6036 7885 7.123247 CACATGGAGAAAAACCCATCTTAAGAT 59.877 37.037 12.37 12.37 40.95 2.40
6037 7886 6.434028 CACATGGAGAAAAACCCATCTTAAGA 59.566 38.462 7.82 7.82 40.95 2.10
6038 7887 6.209391 ACACATGGAGAAAAACCCATCTTAAG 59.791 38.462 0.00 0.00 40.95 1.85
6039 7888 6.015519 CACACATGGAGAAAAACCCATCTTAA 60.016 38.462 0.00 0.00 40.95 1.85
6040 7889 5.476599 CACACATGGAGAAAAACCCATCTTA 59.523 40.000 0.00 0.00 40.95 2.10
6041 7890 4.281688 CACACATGGAGAAAAACCCATCTT 59.718 41.667 0.00 0.00 40.95 2.40
6042 7891 3.828451 CACACATGGAGAAAAACCCATCT 59.172 43.478 0.00 0.00 40.95 2.90
6043 7892 3.573967 ACACACATGGAGAAAAACCCATC 59.426 43.478 0.00 0.00 40.95 3.51
6044 7893 3.321682 CACACACATGGAGAAAAACCCAT 59.678 43.478 0.00 0.00 43.51 4.00
6045 7894 2.692557 CACACACATGGAGAAAAACCCA 59.307 45.455 0.00 0.00 36.79 4.51
6046 7895 2.545742 GCACACACATGGAGAAAAACCC 60.546 50.000 0.00 0.00 0.00 4.11
6047 7896 2.100584 TGCACACACATGGAGAAAAACC 59.899 45.455 0.00 0.00 0.00 3.27
6048 7897 3.435105 TGCACACACATGGAGAAAAAC 57.565 42.857 0.00 0.00 0.00 2.43
6049 7898 3.635836 TCATGCACACACATGGAGAAAAA 59.364 39.130 0.00 0.00 46.08 1.94
6050 7899 3.220940 TCATGCACACACATGGAGAAAA 58.779 40.909 0.00 0.00 46.08 2.29
6051 7900 2.861274 TCATGCACACACATGGAGAAA 58.139 42.857 0.00 0.00 46.08 2.52
6052 7901 2.565046 TCATGCACACACATGGAGAA 57.435 45.000 0.00 0.00 46.08 2.87
6053 7902 2.027007 TCATCATGCACACACATGGAGA 60.027 45.455 0.00 1.31 46.08 3.71
6054 7903 2.096980 GTCATCATGCACACACATGGAG 59.903 50.000 0.00 0.00 46.08 3.86
6055 7904 2.086094 GTCATCATGCACACACATGGA 58.914 47.619 0.00 0.00 46.08 3.41
6056 7905 1.813786 TGTCATCATGCACACACATGG 59.186 47.619 0.00 0.00 46.08 3.66
6058 7907 3.775661 CATGTCATCATGCACACACAT 57.224 42.857 0.00 0.00 43.66 3.21
6068 7917 8.352942 CAATTCATCAACTCATCATGTCATCAT 58.647 33.333 0.00 0.00 34.21 2.45
6069 7918 7.554835 TCAATTCATCAACTCATCATGTCATCA 59.445 33.333 0.00 0.00 0.00 3.07
6070 7919 7.856398 GTCAATTCATCAACTCATCATGTCATC 59.144 37.037 0.00 0.00 0.00 2.92
6071 7920 7.338449 TGTCAATTCATCAACTCATCATGTCAT 59.662 33.333 0.00 0.00 0.00 3.06
6072 7921 6.655848 TGTCAATTCATCAACTCATCATGTCA 59.344 34.615 0.00 0.00 0.00 3.58
6073 7922 7.080353 TGTCAATTCATCAACTCATCATGTC 57.920 36.000 0.00 0.00 0.00 3.06
6074 7923 7.640597 ATGTCAATTCATCAACTCATCATGT 57.359 32.000 0.00 0.00 0.00 3.21
6075 7924 8.837389 ACTATGTCAATTCATCAACTCATCATG 58.163 33.333 0.00 0.00 0.00 3.07
6076 7925 8.975663 ACTATGTCAATTCATCAACTCATCAT 57.024 30.769 0.00 0.00 0.00 2.45
6077 7926 8.797350 AACTATGTCAATTCATCAACTCATCA 57.203 30.769 0.00 0.00 0.00 3.07
6078 7927 8.341173 GGAACTATGTCAATTCATCAACTCATC 58.659 37.037 0.00 0.00 0.00 2.92
6079 7928 7.830697 TGGAACTATGTCAATTCATCAACTCAT 59.169 33.333 0.00 0.00 0.00 2.90
6080 7929 7.167535 TGGAACTATGTCAATTCATCAACTCA 58.832 34.615 0.00 0.00 0.00 3.41
6081 7930 7.615582 TGGAACTATGTCAATTCATCAACTC 57.384 36.000 0.00 0.00 0.00 3.01
6082 7931 9.857656 ATATGGAACTATGTCAATTCATCAACT 57.142 29.630 0.00 0.00 0.00 3.16
6085 7934 9.850198 TCAATATGGAACTATGTCAATTCATCA 57.150 29.630 0.00 0.00 0.00 3.07
6091 7940 9.911788 ACTCTTTCAATATGGAACTATGTCAAT 57.088 29.630 0.00 0.00 0.00 2.57
6092 7941 9.739276 AACTCTTTCAATATGGAACTATGTCAA 57.261 29.630 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.