Multiple sequence alignment - TraesCS6D01G088800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G088800 chr6D 100.000 3093 0 0 1 3093 53776234 53773142 0.000000e+00 5712
1 TraesCS6D01G088800 chr6D 87.204 1266 142 14 735 1986 53681666 53680407 0.000000e+00 1423
2 TraesCS6D01G088800 chr6D 91.111 630 54 2 2464 3093 78523152 78522525 0.000000e+00 852
3 TraesCS6D01G088800 chr6B 91.389 2462 137 16 7 2457 117705818 117708215 0.000000e+00 3302
4 TraesCS6D01G088800 chr6B 87.697 1268 140 10 754 2011 117840110 117841371 0.000000e+00 1463
5 TraesCS6D01G088800 chr6B 85.691 1251 157 15 735 1971 117836800 117838042 0.000000e+00 1299
6 TraesCS6D01G088800 chr6B 85.252 1268 176 11 731 1994 117771895 117773155 0.000000e+00 1295
7 TraesCS6D01G088800 chr6A 96.585 1464 47 3 682 2145 61211525 61212985 0.000000e+00 2423
8 TraesCS6D01G088800 chr6A 87.324 1278 142 14 731 1994 61414595 61415866 0.000000e+00 1445
9 TraesCS6D01G088800 chr6A 83.726 1358 197 20 736 2086 61400201 61401541 0.000000e+00 1262
10 TraesCS6D01G088800 chr6A 90.358 363 22 4 1 361 61209574 61209925 6.040000e-127 464
11 TraesCS6D01G088800 chr6A 93.243 296 14 3 361 650 61211233 61211528 6.130000e-117 431
12 TraesCS6D01G088800 chr6A 97.183 71 2 0 2386 2456 61212989 61213059 1.510000e-23 121
13 TraesCS6D01G088800 chrUn 87.480 1270 143 10 755 2014 381574054 381572791 0.000000e+00 1450
14 TraesCS6D01G088800 chrUn 82.192 219 34 3 2203 2420 77432657 77432443 1.890000e-42 183
15 TraesCS6D01G088800 chr2D 94.888 626 30 2 2468 3093 544250157 544249534 0.000000e+00 977
16 TraesCS6D01G088800 chr5D 93.959 629 38 0 2465 3093 282853580 282852952 0.000000e+00 952
17 TraesCS6D01G088800 chr5D 92.381 630 44 4 2465 3093 437860901 437861527 0.000000e+00 894
18 TraesCS6D01G088800 chr1D 89.490 628 64 2 2464 3091 327923304 327922679 0.000000e+00 793
19 TraesCS6D01G088800 chr1D 87.758 629 72 4 2465 3090 249175878 249176504 0.000000e+00 730
20 TraesCS6D01G088800 chr4A 89.331 628 65 2 2465 3092 608372976 608373601 0.000000e+00 787
21 TraesCS6D01G088800 chr1A 88.906 631 67 3 2465 3093 407135955 407135326 0.000000e+00 774
22 TraesCS6D01G088800 chr3B 88.188 618 69 4 2474 3091 83320085 83320698 0.000000e+00 734


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G088800 chr6D 53773142 53776234 3092 True 5712.00 5712 100.00000 1 3093 1 chr6D.!!$R2 3092
1 TraesCS6D01G088800 chr6D 53680407 53681666 1259 True 1423.00 1423 87.20400 735 1986 1 chr6D.!!$R1 1251
2 TraesCS6D01G088800 chr6D 78522525 78523152 627 True 852.00 852 91.11100 2464 3093 1 chr6D.!!$R3 629
3 TraesCS6D01G088800 chr6B 117705818 117708215 2397 False 3302.00 3302 91.38900 7 2457 1 chr6B.!!$F1 2450
4 TraesCS6D01G088800 chr6B 117836800 117841371 4571 False 1381.00 1463 86.69400 735 2011 2 chr6B.!!$F3 1276
5 TraesCS6D01G088800 chr6B 117771895 117773155 1260 False 1295.00 1295 85.25200 731 1994 1 chr6B.!!$F2 1263
6 TraesCS6D01G088800 chr6A 61414595 61415866 1271 False 1445.00 1445 87.32400 731 1994 1 chr6A.!!$F2 1263
7 TraesCS6D01G088800 chr6A 61400201 61401541 1340 False 1262.00 1262 83.72600 736 2086 1 chr6A.!!$F1 1350
8 TraesCS6D01G088800 chr6A 61209574 61213059 3485 False 859.75 2423 94.34225 1 2456 4 chr6A.!!$F3 2455
9 TraesCS6D01G088800 chrUn 381572791 381574054 1263 True 1450.00 1450 87.48000 755 2014 1 chrUn.!!$R2 1259
10 TraesCS6D01G088800 chr2D 544249534 544250157 623 True 977.00 977 94.88800 2468 3093 1 chr2D.!!$R1 625
11 TraesCS6D01G088800 chr5D 282852952 282853580 628 True 952.00 952 93.95900 2465 3093 1 chr5D.!!$R1 628
12 TraesCS6D01G088800 chr5D 437860901 437861527 626 False 894.00 894 92.38100 2465 3093 1 chr5D.!!$F1 628
13 TraesCS6D01G088800 chr1D 327922679 327923304 625 True 793.00 793 89.49000 2464 3091 1 chr1D.!!$R1 627
14 TraesCS6D01G088800 chr1D 249175878 249176504 626 False 730.00 730 87.75800 2465 3090 1 chr1D.!!$F1 625
15 TraesCS6D01G088800 chr4A 608372976 608373601 625 False 787.00 787 89.33100 2465 3092 1 chr4A.!!$F1 627
16 TraesCS6D01G088800 chr1A 407135326 407135955 629 True 774.00 774 88.90600 2465 3093 1 chr1A.!!$R1 628
17 TraesCS6D01G088800 chr3B 83320085 83320698 613 False 734.00 734 88.18800 2474 3091 1 chr3B.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 1870 0.736325 AGTGGTATCGTTGCGCACTC 60.736 55.000 11.12 5.52 0.00 3.51 F
971 2306 1.424638 ATGCCACCTCGCTACCTTAT 58.575 50.000 0.00 0.00 0.00 1.73 F
1406 6043 2.024414 GGAGCACTTGGTTGTGTCTTT 58.976 47.619 0.00 0.00 39.89 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1574 6211 0.322098 CAATGCGGTACCCCTCAACA 60.322 55.000 6.25 0.0 0.00 3.33 R
1969 6608 1.066430 GCTACGACATGGAAGGTGGAA 60.066 52.381 0.00 0.0 28.73 3.53 R
3020 7661 2.309755 TGAAGATCCAACCATTCCAGCT 59.690 45.455 0.00 0.0 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 6.531240 CACAATATAGTTTTTGTGCATGGTCC 59.469 38.462 4.46 0.00 44.20 4.46
113 114 4.789012 ATAGTTTTTGTGCATGGTCCTG 57.211 40.909 0.00 0.00 0.00 3.86
114 115 1.688197 AGTTTTTGTGCATGGTCCTGG 59.312 47.619 0.00 0.00 0.00 4.45
119 120 1.683365 GTGCATGGTCCTGGCCAAT 60.683 57.895 7.01 0.00 42.48 3.16
133 134 5.045213 TCCTGGCCAATACAGAAAAGATACA 60.045 40.000 7.01 0.00 38.20 2.29
155 156 2.054363 CGACATGAGAGTCACACACAC 58.946 52.381 0.00 0.00 38.43 3.82
157 158 2.797156 GACATGAGAGTCACACACACAC 59.203 50.000 0.00 0.00 38.40 3.82
164 167 0.806102 GTCACACACACACAGAGCGT 60.806 55.000 0.00 0.00 0.00 5.07
261 264 7.201530 CCTGTCCTAATTTAAGAGCTAAACACG 60.202 40.741 0.00 0.00 32.26 4.49
275 278 8.440833 AGAGCTAAACACGTAAAAATATCACAC 58.559 33.333 0.00 0.00 0.00 3.82
284 287 9.767684 CACGTAAAAATATCACACATACACAAT 57.232 29.630 0.00 0.00 0.00 2.71
369 1680 8.946085 TCATCTGAAAAACTGGTATATGTGAAC 58.054 33.333 0.00 0.00 0.00 3.18
530 1851 8.807948 TCCACCATTTTGTTTTCCAAATTTAA 57.192 26.923 0.00 0.00 42.45 1.52
549 1870 0.736325 AGTGGTATCGTTGCGCACTC 60.736 55.000 11.12 5.52 0.00 3.51
630 1955 2.279517 GCGGAGTACATCAGGGCG 60.280 66.667 0.00 0.00 0.00 6.13
674 1999 4.883083 TCAACGAGCTTGAATTGACTACT 58.117 39.130 8.31 0.00 35.84 2.57
675 2000 5.297547 TCAACGAGCTTGAATTGACTACTT 58.702 37.500 8.31 0.00 35.84 2.24
676 2001 5.405571 TCAACGAGCTTGAATTGACTACTTC 59.594 40.000 8.31 0.00 35.84 3.01
677 2002 4.246458 ACGAGCTTGAATTGACTACTTCC 58.754 43.478 8.31 0.00 0.00 3.46
678 2003 4.245660 CGAGCTTGAATTGACTACTTCCA 58.754 43.478 0.00 0.00 0.00 3.53
679 2004 4.328440 CGAGCTTGAATTGACTACTTCCAG 59.672 45.833 0.00 0.00 0.00 3.86
680 2005 4.583871 AGCTTGAATTGACTACTTCCAGG 58.416 43.478 0.00 0.00 0.00 4.45
713 2038 1.814394 AGAAATCTGCTGCATGCGAAA 59.186 42.857 14.09 0.00 46.63 3.46
814 2145 2.353839 GCCACAAGCACGCAACAG 60.354 61.111 0.00 0.00 42.97 3.16
931 2264 4.401022 TCCATGTTGATCTTGTCAGCTTT 58.599 39.130 0.00 0.00 38.70 3.51
940 2273 3.202906 TCTTGTCAGCTTTACACACCAC 58.797 45.455 0.00 0.00 0.00 4.16
944 2277 3.138304 GTCAGCTTTACACACCACATCA 58.862 45.455 0.00 0.00 0.00 3.07
971 2306 1.424638 ATGCCACCTCGCTACCTTAT 58.575 50.000 0.00 0.00 0.00 1.73
1406 6043 2.024414 GGAGCACTTGGTTGTGTCTTT 58.976 47.619 0.00 0.00 39.89 2.52
1574 6211 2.046892 GTCGTGCTCATGGGTGCT 60.047 61.111 0.00 0.00 34.68 4.40
1932 6571 9.239002 GTCTGAGTTGTACTATCATGATGTAAC 57.761 37.037 18.72 14.24 0.00 2.50
1997 6636 1.421410 CCATGTCGTAGCTTGCGTCC 61.421 60.000 9.61 3.98 0.00 4.79
2154 6793 2.075355 AATTTGTGGGGCCCGAGTGA 62.075 55.000 19.83 1.32 0.00 3.41
2155 6794 2.484287 ATTTGTGGGGCCCGAGTGAG 62.484 60.000 19.83 0.00 0.00 3.51
2165 6804 3.698250 CCGAGTGAGGGAAACACAA 57.302 52.632 0.00 0.00 40.25 3.33
2166 6805 1.512926 CCGAGTGAGGGAAACACAAG 58.487 55.000 0.00 0.00 40.25 3.16
2167 6806 1.202651 CCGAGTGAGGGAAACACAAGT 60.203 52.381 0.00 0.00 40.25 3.16
2168 6807 1.867233 CGAGTGAGGGAAACACAAGTG 59.133 52.381 0.00 0.00 40.25 3.16
2170 6809 3.491964 CGAGTGAGGGAAACACAAGTGTA 60.492 47.826 6.24 0.00 44.13 2.90
2171 6810 4.058817 GAGTGAGGGAAACACAAGTGTAG 58.941 47.826 6.24 0.00 44.13 2.74
2172 6811 3.709653 AGTGAGGGAAACACAAGTGTAGA 59.290 43.478 6.24 0.00 44.13 2.59
2173 6812 4.348168 AGTGAGGGAAACACAAGTGTAGAT 59.652 41.667 6.24 0.00 44.13 1.98
2174 6813 5.542635 AGTGAGGGAAACACAAGTGTAGATA 59.457 40.000 6.24 0.00 44.13 1.98
2175 6814 6.213600 AGTGAGGGAAACACAAGTGTAGATAT 59.786 38.462 6.24 0.00 44.13 1.63
2176 6815 6.879458 GTGAGGGAAACACAAGTGTAGATATT 59.121 38.462 6.24 0.00 44.13 1.28
2177 6816 7.390718 GTGAGGGAAACACAAGTGTAGATATTT 59.609 37.037 6.24 0.00 44.13 1.40
2182 6821 6.743575 AACACAAGTGTAGATATTTCAGCC 57.256 37.500 6.24 0.00 44.13 4.85
2271 6910 0.112995 TCCCACTCAATTGCAAGGCT 59.887 50.000 4.94 0.00 0.00 4.58
2313 6952 3.518634 TTTTCCAACCAAACAGAGTGC 57.481 42.857 0.00 0.00 0.00 4.40
2314 6953 2.136298 TTCCAACCAAACAGAGTGCA 57.864 45.000 0.00 0.00 0.00 4.57
2319 6958 1.901591 ACCAAACAGAGTGCATCCAG 58.098 50.000 0.00 0.00 0.00 3.86
2347 6986 4.082895 ACTGCAGCAGTGATTTTTCAGATC 60.083 41.667 27.73 0.00 43.63 2.75
2379 7018 8.878769 ACATTTTTACTTTGTGATTTGGACAAC 58.121 29.630 0.00 0.00 33.06 3.32
2432 7071 9.607333 AGTAATCAAGAATGATATACCCTCTCA 57.393 33.333 0.00 0.00 45.60 3.27
2457 7096 2.529090 CGTATTCGTGTTCGGCTTCTAC 59.471 50.000 0.00 0.00 37.69 2.59
2458 7097 1.625616 ATTCGTGTTCGGCTTCTACG 58.374 50.000 0.00 0.00 37.69 3.51
2459 7098 0.311790 TTCGTGTTCGGCTTCTACGT 59.688 50.000 0.00 0.00 36.28 3.57
2460 7099 1.155889 TCGTGTTCGGCTTCTACGTA 58.844 50.000 0.00 0.00 36.28 3.57
2461 7100 1.739466 TCGTGTTCGGCTTCTACGTAT 59.261 47.619 0.00 0.00 36.28 3.06
2462 7101 2.162208 TCGTGTTCGGCTTCTACGTATT 59.838 45.455 0.00 0.00 36.28 1.89
2504 7143 1.679153 CCTAACCAACTTTGCCAACGT 59.321 47.619 0.00 0.00 0.00 3.99
2696 7335 1.739338 CTCCTAGAACGCTCCCGCAT 61.739 60.000 0.00 0.00 38.22 4.73
2967 7608 9.467258 CTCAAAAACTTGCATCTTCAGAATAAA 57.533 29.630 0.00 0.00 0.00 1.40
3020 7661 1.236026 ACATCCTCCTCCACCCCCTA 61.236 60.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 5.220931 GCTGTATCTTTTCTGTATTGGCCAG 60.221 44.000 5.11 0.00 0.00 4.85
113 114 4.260784 CGCTGTATCTTTTCTGTATTGGCC 60.261 45.833 0.00 0.00 0.00 5.36
114 115 4.570772 TCGCTGTATCTTTTCTGTATTGGC 59.429 41.667 0.00 0.00 0.00 4.52
119 120 5.961272 TCATGTCGCTGTATCTTTTCTGTA 58.039 37.500 0.00 0.00 0.00 2.74
133 134 0.961753 TGTGTGACTCTCATGTCGCT 59.038 50.000 9.16 0.00 44.87 4.93
157 158 3.305398 AGTTTAACCTCTCACGCTCTG 57.695 47.619 0.00 0.00 0.00 3.35
232 235 9.227777 GTTTAGCTCTTAAATTAGGACAGGAAA 57.772 33.333 0.00 0.00 33.99 3.13
341 344 9.112725 TCACATATACCAGTTTTTCAGATGATG 57.887 33.333 0.00 0.00 0.00 3.07
369 1680 6.239908 TGTTTGACTATATTGCACTGTGTG 57.760 37.500 9.86 0.00 36.51 3.82
530 1851 0.736325 GAGTGCGCAACGATACCACT 60.736 55.000 14.00 0.02 39.27 4.00
603 1928 6.223852 CCTGATGTACTCCGCATATTTTAGT 58.776 40.000 0.00 0.00 0.00 2.24
610 1935 0.679505 GCCCTGATGTACTCCGCATA 59.320 55.000 0.00 0.00 0.00 3.14
613 1938 2.279517 CGCCCTGATGTACTCCGC 60.280 66.667 0.00 0.00 0.00 5.54
630 1955 8.933807 GTTGAAAGGAATTACTAACACTAGGAC 58.066 37.037 0.00 0.00 0.00 3.85
674 1999 1.349026 CTTCTCTGCTGGAACCTGGAA 59.651 52.381 0.00 0.00 0.00 3.53
675 2000 0.979665 CTTCTCTGCTGGAACCTGGA 59.020 55.000 0.00 0.00 0.00 3.86
676 2001 0.979665 TCTTCTCTGCTGGAACCTGG 59.020 55.000 0.00 0.00 0.00 4.45
677 2002 2.847327 TTCTTCTCTGCTGGAACCTG 57.153 50.000 0.00 0.00 0.00 4.00
678 2003 3.586618 AGATTTCTTCTCTGCTGGAACCT 59.413 43.478 0.00 0.00 0.00 3.50
679 2004 3.688673 CAGATTTCTTCTCTGCTGGAACC 59.311 47.826 0.00 0.00 34.24 3.62
680 2005 4.943142 CAGATTTCTTCTCTGCTGGAAC 57.057 45.455 0.00 0.00 34.24 3.62
713 2038 6.607600 TGAGATCTGTTAATAGTAGTGCCTGT 59.392 38.462 0.00 0.00 0.00 4.00
808 2138 2.730550 CCAGGAAATGGTTCTGTTGC 57.269 50.000 0.00 0.00 44.91 4.17
931 2264 2.274542 AGGGGATTGATGTGGTGTGTA 58.725 47.619 0.00 0.00 0.00 2.90
940 2273 1.426598 AGGTGGCATAGGGGATTGATG 59.573 52.381 0.00 0.00 0.00 3.07
944 2277 2.056906 GCGAGGTGGCATAGGGGATT 62.057 60.000 0.00 0.00 0.00 3.01
971 2306 2.001558 GGAGAGGGGGAGGTAGCTATA 58.998 57.143 0.00 0.00 0.00 1.31
1574 6211 0.322098 CAATGCGGTACCCCTCAACA 60.322 55.000 6.25 0.00 0.00 3.33
1903 6541 7.070447 ACATCATGATAGTACAACTCAGACCAT 59.930 37.037 8.15 0.00 0.00 3.55
1932 6571 8.651391 TGCCTTTGCATAAAATTCTCATAATG 57.349 30.769 0.00 0.00 44.23 1.90
1954 6593 5.405935 AGGTGGAAAAATCTAACAATGCC 57.594 39.130 0.00 0.00 0.00 4.40
1969 6608 1.066430 GCTACGACATGGAAGGTGGAA 60.066 52.381 0.00 0.00 28.73 3.53
2022 6661 7.227314 GCTCCTGTTATTGTGATTGTGATGATA 59.773 37.037 0.00 0.00 0.00 2.15
2154 6793 7.458397 TGAAATATCTACACTTGTGTTTCCCT 58.542 34.615 11.80 0.00 0.00 4.20
2155 6794 7.626452 GCTGAAATATCTACACTTGTGTTTCCC 60.626 40.741 11.80 0.50 0.00 3.97
2156 6795 7.244192 GCTGAAATATCTACACTTGTGTTTCC 58.756 38.462 11.80 0.00 0.00 3.13
2157 6796 7.094805 TGGCTGAAATATCTACACTTGTGTTTC 60.095 37.037 11.80 8.79 0.00 2.78
2158 6797 6.714810 TGGCTGAAATATCTACACTTGTGTTT 59.285 34.615 11.80 0.00 0.00 2.83
2159 6798 6.237901 TGGCTGAAATATCTACACTTGTGTT 58.762 36.000 11.80 0.00 0.00 3.32
2160 6799 5.804639 TGGCTGAAATATCTACACTTGTGT 58.195 37.500 11.30 11.30 0.00 3.72
2161 6800 6.676456 GCTTGGCTGAAATATCTACACTTGTG 60.676 42.308 0.00 0.00 0.00 3.33
2162 6801 5.355350 GCTTGGCTGAAATATCTACACTTGT 59.645 40.000 0.00 0.00 0.00 3.16
2163 6802 5.587844 AGCTTGGCTGAAATATCTACACTTG 59.412 40.000 0.00 0.00 37.57 3.16
2164 6803 5.749462 AGCTTGGCTGAAATATCTACACTT 58.251 37.500 0.00 0.00 37.57 3.16
2165 6804 5.365021 AGCTTGGCTGAAATATCTACACT 57.635 39.130 0.00 0.00 37.57 3.55
2166 6805 6.442513 AAAGCTTGGCTGAAATATCTACAC 57.557 37.500 0.00 0.00 39.62 2.90
2167 6806 7.775093 ACATAAAGCTTGGCTGAAATATCTACA 59.225 33.333 0.00 0.00 39.62 2.74
2168 6807 8.159344 ACATAAAGCTTGGCTGAAATATCTAC 57.841 34.615 0.00 0.00 39.62 2.59
2169 6808 8.752005 AACATAAAGCTTGGCTGAAATATCTA 57.248 30.769 0.00 0.00 39.62 1.98
2170 6809 7.651027 AACATAAAGCTTGGCTGAAATATCT 57.349 32.000 0.00 0.00 39.62 1.98
2171 6810 7.166473 CGAAACATAAAGCTTGGCTGAAATATC 59.834 37.037 0.00 0.00 39.62 1.63
2172 6811 6.974622 CGAAACATAAAGCTTGGCTGAAATAT 59.025 34.615 0.00 0.00 39.62 1.28
2173 6812 6.072175 ACGAAACATAAAGCTTGGCTGAAATA 60.072 34.615 0.00 0.00 39.62 1.40
2174 6813 5.163513 CGAAACATAAAGCTTGGCTGAAAT 58.836 37.500 0.00 0.00 39.62 2.17
2175 6814 4.037446 ACGAAACATAAAGCTTGGCTGAAA 59.963 37.500 0.00 0.00 39.62 2.69
2176 6815 3.568007 ACGAAACATAAAGCTTGGCTGAA 59.432 39.130 0.00 0.00 39.62 3.02
2177 6816 3.058293 CACGAAACATAAAGCTTGGCTGA 60.058 43.478 0.00 0.00 39.62 4.26
2182 6821 9.425893 CAGAATATACACGAAACATAAAGCTTG 57.574 33.333 0.00 0.00 0.00 4.01
2313 6952 3.558829 CACTGCTGCAGTATAACTGGATG 59.441 47.826 32.51 14.08 45.46 3.51
2314 6953 3.452264 TCACTGCTGCAGTATAACTGGAT 59.548 43.478 32.51 5.62 45.46 3.41
2319 6958 6.611381 TGAAAAATCACTGCTGCAGTATAAC 58.389 36.000 32.51 19.56 43.43 1.89
2366 7005 8.723942 ATATGTCTCTAAGTTGTCCAAATCAC 57.276 34.615 0.00 0.00 0.00 3.06
2421 7060 3.817084 CGAATACGTGGTGAGAGGGTATA 59.183 47.826 0.00 0.00 34.56 1.47
2457 7096 3.000041 TCTTAGTGGTGCAGCAAATACG 59.000 45.455 22.04 13.78 0.00 3.06
2458 7097 4.003648 ACTCTTAGTGGTGCAGCAAATAC 58.996 43.478 22.04 8.23 0.00 1.89
2459 7098 4.286297 ACTCTTAGTGGTGCAGCAAATA 57.714 40.909 22.04 13.74 0.00 1.40
2460 7099 3.146104 ACTCTTAGTGGTGCAGCAAAT 57.854 42.857 22.04 14.82 0.00 2.32
2461 7100 2.638480 ACTCTTAGTGGTGCAGCAAA 57.362 45.000 22.04 11.53 0.00 3.68
2462 7101 3.762407 TTACTCTTAGTGGTGCAGCAA 57.238 42.857 22.04 2.54 0.00 3.91
2940 7581 6.455360 TTCTGAAGATGCAAGTTTTTGAGT 57.545 33.333 0.00 0.00 36.36 3.41
2967 7608 3.932710 CTGCAAATTTCATGAGCAAGCAT 59.067 39.130 7.83 0.00 34.45 3.79
3020 7661 2.309755 TGAAGATCCAACCATTCCAGCT 59.690 45.455 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.