Multiple sequence alignment - TraesCS6D01G087600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6D01G087600
chr6D
100.000
9498
0
0
1
9498
52828439
52818942
0.000000e+00
17540
1
TraesCS6D01G087600
chr6D
93.694
111
7
0
576
686
323668433
323668543
5.900000e-37
167
2
TraesCS6D01G087600
chr6A
96.887
3726
91
14
697
4401
63776528
63772807
0.000000e+00
6215
3
TraesCS6D01G087600
chr6A
97.336
1952
30
2
4450
6401
63772801
63770872
0.000000e+00
3297
4
TraesCS6D01G087600
chr6A
97.587
1699
36
4
7449
9144
63769761
63768065
0.000000e+00
2905
5
TraesCS6D01G087600
chr6A
97.919
961
20
0
6484
7444
63770870
63769910
0.000000e+00
1664
6
TraesCS6D01G087600
chr6A
97.333
225
5
1
9274
9498
63768006
63767783
1.940000e-101
381
7
TraesCS6D01G087600
chr6B
94.784
3432
99
34
673
4053
119986336
119982934
0.000000e+00
5273
8
TraesCS6D01G087600
chr6B
97.192
2386
57
5
4049
6427
119982736
119980354
0.000000e+00
4026
9
TraesCS6D01G087600
chr6B
97.592
1869
41
4
6474
8340
119980276
119978410
0.000000e+00
3199
10
TraesCS6D01G087600
chr6B
95.876
1164
42
6
8339
9498
119978438
119977277
0.000000e+00
1879
11
TraesCS6D01G087600
chr6B
94.898
98
5
0
6400
6497
164810385
164810288
4.590000e-33
154
12
TraesCS6D01G087600
chr2D
98.611
576
6
1
1
576
275177329
275177902
0.000000e+00
1018
13
TraesCS6D01G087600
chr2D
92.373
118
4
5
576
693
213131299
213131411
7.630000e-36
163
14
TraesCS6D01G087600
chr2D
90.400
125
7
4
576
696
545396159
545396282
9.870000e-35
159
15
TraesCS6D01G087600
chr2D
92.233
103
7
1
6400
6502
441039185
441039084
2.760000e-30
145
16
TraesCS6D01G087600
chr2D
90.179
112
10
1
6391
6502
638464730
638464840
2.760000e-30
145
17
TraesCS6D01G087600
chr3D
98.264
576
7
2
1
576
511684361
511683789
0.000000e+00
1005
18
TraesCS6D01G087600
chr3D
96.007
576
10
1
1
576
442776804
442777366
0.000000e+00
924
19
TraesCS6D01G087600
chr3D
90.625
128
8
2
576
700
232037837
232037963
5.900000e-37
167
20
TraesCS6D01G087600
chr3D
92.373
118
5
3
576
692
259177409
259177523
2.120000e-36
165
21
TraesCS6D01G087600
chr5D
92.746
579
23
4
1
576
169968826
169969388
0.000000e+00
819
22
TraesCS6D01G087600
chr2A
90.878
592
35
5
1
576
719698166
719698754
0.000000e+00
776
23
TraesCS6D01G087600
chr4A
90.508
590
38
6
1
576
43267808
43268393
0.000000e+00
763
24
TraesCS6D01G087600
chr4A
88.793
580
31
17
1
577
618263678
618264226
0.000000e+00
680
25
TraesCS6D01G087600
chr1A
90.339
590
39
6
1
576
568651456
568652041
0.000000e+00
758
26
TraesCS6D01G087600
chr5A
88.663
591
37
12
1
577
664545557
664544983
0.000000e+00
693
27
TraesCS6D01G087600
chr3B
86.621
583
33
9
12
581
10015896
10015346
3.790000e-168
603
28
TraesCS6D01G087600
chr5B
85.059
589
44
9
1
576
393943199
393943756
2.320000e-155
560
29
TraesCS6D01G087600
chr5B
90.400
125
8
4
576
697
706217929
706218052
2.740000e-35
161
30
TraesCS6D01G087600
chr5B
96.809
94
3
0
6399
6492
482285947
482285854
3.550000e-34
158
31
TraesCS6D01G087600
chr5B
97.802
91
2
0
6399
6489
482285860
482285950
3.550000e-34
158
32
TraesCS6D01G087600
chr7B
92.562
121
5
3
576
693
542859682
542859563
4.560000e-38
171
33
TraesCS6D01G087600
chr7D
94.545
110
4
2
576
685
174964761
174964654
1.640000e-37
169
34
TraesCS6D01G087600
chr7D
93.750
112
5
2
576
686
220228859
220228749
5.900000e-37
167
35
TraesCS6D01G087600
chr2B
95.000
100
5
0
6395
6494
297439029
297438930
3.550000e-34
158
36
TraesCS6D01G087600
chr4B
96.774
93
3
0
6393
6485
599830397
599830305
1.280000e-33
156
37
TraesCS6D01G087600
chr1B
94.949
99
4
1
6400
6498
97376181
97376084
4.590000e-33
154
38
TraesCS6D01G087600
chr4D
92.308
104
8
0
6400
6503
481440702
481440599
2.140000e-31
148
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6D01G087600
chr6D
52818942
52828439
9497
True
17540.00
17540
100.0000
1
9498
1
chr6D.!!$R1
9497
1
TraesCS6D01G087600
chr6A
63767783
63776528
8745
True
2892.40
6215
97.4124
697
9498
5
chr6A.!!$R1
8801
2
TraesCS6D01G087600
chr6B
119977277
119986336
9059
True
3594.25
5273
96.3610
673
9498
4
chr6B.!!$R2
8825
3
TraesCS6D01G087600
chr2D
275177329
275177902
573
False
1018.00
1018
98.6110
1
576
1
chr2D.!!$F2
575
4
TraesCS6D01G087600
chr3D
511683789
511684361
572
True
1005.00
1005
98.2640
1
576
1
chr3D.!!$R1
575
5
TraesCS6D01G087600
chr3D
442776804
442777366
562
False
924.00
924
96.0070
1
576
1
chr3D.!!$F3
575
6
TraesCS6D01G087600
chr5D
169968826
169969388
562
False
819.00
819
92.7460
1
576
1
chr5D.!!$F1
575
7
TraesCS6D01G087600
chr2A
719698166
719698754
588
False
776.00
776
90.8780
1
576
1
chr2A.!!$F1
575
8
TraesCS6D01G087600
chr4A
43267808
43268393
585
False
763.00
763
90.5080
1
576
1
chr4A.!!$F1
575
9
TraesCS6D01G087600
chr4A
618263678
618264226
548
False
680.00
680
88.7930
1
577
1
chr4A.!!$F2
576
10
TraesCS6D01G087600
chr1A
568651456
568652041
585
False
758.00
758
90.3390
1
576
1
chr1A.!!$F1
575
11
TraesCS6D01G087600
chr5A
664544983
664545557
574
True
693.00
693
88.6630
1
577
1
chr5A.!!$R1
576
12
TraesCS6D01G087600
chr3B
10015346
10015896
550
True
603.00
603
86.6210
12
581
1
chr3B.!!$R1
569
13
TraesCS6D01G087600
chr5B
393943199
393943756
557
False
560.00
560
85.0590
1
576
1
chr5B.!!$F1
575
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
590
633
0.105224
CAGTGGGTACGTGGACAACA
59.895
55.000
0.00
0.00
0.00
3.33
F
591
634
0.105408
AGTGGGTACGTGGACAACAC
59.895
55.000
0.00
2.95
46.78
3.32
F
614
657
0.107456
CCCCTCTCGTTGCTATGCAT
59.893
55.000
3.79
3.79
38.76
3.96
F
634
677
0.179181
CACCATGATCTTGCGTGTGC
60.179
55.000
15.81
0.00
43.20
4.57
F
670
713
0.470766
AACTACTGCGTTCCCCAACA
59.529
50.000
0.00
0.00
32.14
3.33
F
671
714
0.470766
ACTACTGCGTTCCCCAACAA
59.529
50.000
0.00
0.00
32.14
2.83
F
1648
1734
0.756294
TTCAAGAACACGGAGAGCCA
59.244
50.000
0.00
0.00
0.00
4.75
F
3719
3818
0.393820
CAAACCAGCCACCATGCTTT
59.606
50.000
0.00
0.00
40.32
3.51
F
4309
4610
0.586802
GTTTGGTGCTTCTGTCGACC
59.413
55.000
14.12
0.00
0.00
4.79
F
4760
5061
1.019673
AAGTGCACTGCTCTGTTGTG
58.980
50.000
22.49
0.00
32.56
3.33
F
6416
6723
1.145325
AGATACTCCCTCCGTTCCGAT
59.855
52.381
0.00
0.00
0.00
4.18
F
8240
8725
0.179234
TCGCTTTGACACCTTGTCCA
59.821
50.000
3.91
0.00
46.40
4.02
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1603
1689
0.247736
GCGCTTCTTCTTCTCCCTCA
59.752
55.000
0.00
0.00
0.00
3.86
R
2063
2149
1.707632
CTTCCTCACTGCAGTCTTCG
58.292
55.000
18.64
5.91
0.00
3.79
R
2201
2287
6.012858
TGCATTGATTAAGGTACTATAGGGGG
60.013
42.308
4.43
0.00
38.49
5.40
R
2410
2496
7.176515
TGTGCATACAGTTTATCACCTTTTGAT
59.823
33.333
0.00
0.00
39.15
2.57
R
2970
3058
2.124570
CGGGGCAGTGAATCCCTG
60.125
66.667
12.72
6.85
42.25
4.45
R
2987
3075
5.383130
GGTTTTTCGCTACTCATGTTCTTC
58.617
41.667
0.00
0.00
0.00
2.87
R
3834
3933
0.398696
TGCAGTACGGGTTGGATTGT
59.601
50.000
0.00
0.00
0.00
2.71
R
4671
4972
2.276201
TGAACACAAGGAACACACTCG
58.724
47.619
0.00
0.00
0.00
4.18
R
6459
6766
2.165845
CCCTCCGTTCTGATTTACTCGT
59.834
50.000
0.00
0.00
0.00
4.18
R
6460
6767
2.426024
TCCCTCCGTTCTGATTTACTCG
59.574
50.000
0.00
0.00
0.00
4.18
R
8330
8815
1.819288
CCACTCGGCAGACTTCTTAGA
59.181
52.381
0.00
0.00
0.00
2.10
R
9225
9713
2.109126
GCCAGCAGGTAAGAAGGCG
61.109
63.158
0.00
0.00
37.19
5.52
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
105
107
2.300956
AGTTCAGAGCAGAGGAGTGA
57.699
50.000
0.00
0.00
0.00
3.41
446
479
2.072487
GGCCCATCAGACCAGGCTA
61.072
63.158
0.00
0.00
45.07
3.93
577
620
3.775654
GAGAGGTCCGCCAGTGGG
61.776
72.222
12.15
0.59
37.19
4.61
581
624
4.446413
GGTCCGCCAGTGGGTACG
62.446
72.222
12.15
5.97
36.17
3.67
582
625
3.688159
GTCCGCCAGTGGGTACGT
61.688
66.667
12.15
0.00
36.17
3.57
583
626
3.687102
TCCGCCAGTGGGTACGTG
61.687
66.667
12.15
1.06
36.17
4.49
584
627
4.752879
CCGCCAGTGGGTACGTGG
62.753
72.222
12.15
0.00
36.17
4.94
585
628
3.687102
CGCCAGTGGGTACGTGGA
61.687
66.667
12.15
0.00
36.17
4.02
586
629
2.047560
GCCAGTGGGTACGTGGAC
60.048
66.667
12.15
0.00
36.17
4.02
587
630
2.874664
GCCAGTGGGTACGTGGACA
61.875
63.158
12.15
0.00
36.17
4.02
588
631
1.749665
CCAGTGGGTACGTGGACAA
59.250
57.895
0.00
0.00
32.60
3.18
589
632
0.601841
CCAGTGGGTACGTGGACAAC
60.602
60.000
0.00
0.00
32.60
3.32
590
633
0.105224
CAGTGGGTACGTGGACAACA
59.895
55.000
0.00
0.00
0.00
3.33
591
634
0.105408
AGTGGGTACGTGGACAACAC
59.895
55.000
0.00
2.95
46.78
3.32
599
642
2.453242
GTGGACAACACTCTCCCCT
58.547
57.895
0.00
0.00
46.72
4.79
600
643
0.321996
GTGGACAACACTCTCCCCTC
59.678
60.000
0.00
0.00
46.72
4.30
601
644
0.191064
TGGACAACACTCTCCCCTCT
59.809
55.000
0.00
0.00
0.00
3.69
602
645
0.899019
GGACAACACTCTCCCCTCTC
59.101
60.000
0.00
0.00
0.00
3.20
603
646
0.528470
GACAACACTCTCCCCTCTCG
59.472
60.000
0.00
0.00
0.00
4.04
604
647
0.178958
ACAACACTCTCCCCTCTCGT
60.179
55.000
0.00
0.00
0.00
4.18
605
648
0.969894
CAACACTCTCCCCTCTCGTT
59.030
55.000
0.00
0.00
0.00
3.85
606
649
0.969894
AACACTCTCCCCTCTCGTTG
59.030
55.000
0.00
0.00
0.00
4.10
607
650
1.216710
CACTCTCCCCTCTCGTTGC
59.783
63.158
0.00
0.00
0.00
4.17
608
651
1.077625
ACTCTCCCCTCTCGTTGCT
59.922
57.895
0.00
0.00
0.00
3.91
609
652
0.331954
ACTCTCCCCTCTCGTTGCTA
59.668
55.000
0.00
0.00
0.00
3.49
610
653
1.063567
ACTCTCCCCTCTCGTTGCTAT
60.064
52.381
0.00
0.00
0.00
2.97
611
654
1.339610
CTCTCCCCTCTCGTTGCTATG
59.660
57.143
0.00
0.00
0.00
2.23
612
655
0.249657
CTCCCCTCTCGTTGCTATGC
60.250
60.000
0.00
0.00
0.00
3.14
613
656
0.975556
TCCCCTCTCGTTGCTATGCA
60.976
55.000
0.00
0.00
36.47
3.96
614
657
0.107456
CCCCTCTCGTTGCTATGCAT
59.893
55.000
3.79
3.79
38.76
3.96
615
658
1.506493
CCCTCTCGTTGCTATGCATC
58.494
55.000
0.19
0.00
38.76
3.91
616
659
1.202568
CCCTCTCGTTGCTATGCATCA
60.203
52.381
0.19
0.00
38.76
3.07
617
660
1.863454
CCTCTCGTTGCTATGCATCAC
59.137
52.381
0.19
0.00
38.76
3.06
618
661
1.863454
CTCTCGTTGCTATGCATCACC
59.137
52.381
0.19
0.00
38.76
4.02
619
662
1.206849
TCTCGTTGCTATGCATCACCA
59.793
47.619
0.19
0.00
38.76
4.17
620
663
2.158914
TCTCGTTGCTATGCATCACCAT
60.159
45.455
0.19
0.00
38.76
3.55
621
664
1.941975
TCGTTGCTATGCATCACCATG
59.058
47.619
0.19
0.00
38.76
3.66
622
665
1.941975
CGTTGCTATGCATCACCATGA
59.058
47.619
0.19
0.00
38.76
3.07
623
666
2.551032
CGTTGCTATGCATCACCATGAT
59.449
45.455
0.19
0.00
38.76
2.45
624
667
3.364664
CGTTGCTATGCATCACCATGATC
60.365
47.826
0.19
0.00
38.76
2.92
625
668
3.782656
TGCTATGCATCACCATGATCT
57.217
42.857
0.19
0.00
34.28
2.75
626
669
4.094830
TGCTATGCATCACCATGATCTT
57.905
40.909
0.19
0.00
34.28
2.40
627
670
3.818773
TGCTATGCATCACCATGATCTTG
59.181
43.478
0.19
1.60
34.28
3.02
628
671
3.366070
GCTATGCATCACCATGATCTTGC
60.366
47.826
0.19
0.00
34.28
4.01
629
672
1.018910
TGCATCACCATGATCTTGCG
58.981
50.000
3.07
0.30
34.28
4.85
630
673
1.019673
GCATCACCATGATCTTGCGT
58.980
50.000
3.07
0.87
34.28
5.24
631
674
1.268386
GCATCACCATGATCTTGCGTG
60.268
52.381
17.02
17.02
34.28
5.34
632
675
2.011947
CATCACCATGATCTTGCGTGT
58.988
47.619
19.89
6.63
34.28
4.49
633
676
1.441738
TCACCATGATCTTGCGTGTG
58.558
50.000
19.89
14.96
0.00
3.82
634
677
0.179181
CACCATGATCTTGCGTGTGC
60.179
55.000
15.81
0.00
43.20
4.57
646
689
2.325509
GCGTGTGCGTAGGAATTTTT
57.674
45.000
0.00
0.00
40.81
1.94
666
709
4.834357
TTTTAAAACTACTGCGTTCCCC
57.166
40.909
0.00
0.00
0.00
4.81
667
710
3.488778
TTAAAACTACTGCGTTCCCCA
57.511
42.857
0.00
0.00
0.00
4.96
668
711
2.351706
AAAACTACTGCGTTCCCCAA
57.648
45.000
0.00
0.00
0.00
4.12
669
712
1.601166
AAACTACTGCGTTCCCCAAC
58.399
50.000
0.00
0.00
0.00
3.77
670
713
0.470766
AACTACTGCGTTCCCCAACA
59.529
50.000
0.00
0.00
32.14
3.33
671
714
0.470766
ACTACTGCGTTCCCCAACAA
59.529
50.000
0.00
0.00
32.14
2.83
679
722
4.310769
TGCGTTCCCCAACAATTTTTATG
58.689
39.130
0.00
0.00
32.14
1.90
682
725
5.107259
GCGTTCCCCAACAATTTTTATGTTC
60.107
40.000
0.00
0.00
38.90
3.18
691
734
9.757227
CCAACAATTTTTATGTTCTTTGAGGTA
57.243
29.630
0.00
0.00
38.90
3.08
1263
1316
1.304547
CCCACTCACTCGTCTCCCT
60.305
63.158
0.00
0.00
0.00
4.20
1277
1330
2.094234
GTCTCCCTTCTCTTGCTCAGAC
60.094
54.545
0.00
0.00
0.00
3.51
1322
1375
3.769844
GTGACTTCACCAAGGAGATCCTA
59.230
47.826
0.81
0.00
42.41
2.94
1523
1609
2.430382
AAGACGACGTGGACGCCATT
62.430
55.000
4.58
0.00
44.43
3.16
1603
1689
2.147387
ACTTGCGGAAGGAGGTGGT
61.147
57.895
21.31
0.00
40.95
4.16
1648
1734
0.756294
TTCAAGAACACGGAGAGCCA
59.244
50.000
0.00
0.00
0.00
4.75
2063
2149
1.716581
CGAGAACTTTGTCGCTCTGTC
59.283
52.381
0.00
0.00
37.16
3.51
2120
2206
3.260380
CAGGTAATGGCCCAAAATCACAA
59.740
43.478
0.00
0.00
0.00
3.33
2160
2246
7.379059
TGGGTATTCATCATAATGAGACAGT
57.621
36.000
0.00
0.00
42.72
3.55
2764
2850
5.239525
ACTGTTTGCCTAGTGTTCTTCAATC
59.760
40.000
0.00
0.00
0.00
2.67
2987
3075
1.987807
ATCAGGGATTCACTGCCCCG
61.988
60.000
11.24
0.00
45.89
5.73
3124
3212
1.817357
CAGAAGTGCAGAGCATTGGA
58.183
50.000
0.00
0.00
41.91
3.53
3588
3686
4.189639
AGAGAAGTTTAAGGTAGCACCG
57.810
45.455
0.00
0.00
44.90
4.94
3719
3818
0.393820
CAAACCAGCCACCATGCTTT
59.606
50.000
0.00
0.00
40.32
3.51
3834
3933
3.197766
AGTCGATTTGTATGGCCAGAGAA
59.802
43.478
13.05
9.18
0.00
2.87
3959
4058
1.746615
GCATCATGTGGCCGTCTGT
60.747
57.895
0.00
0.00
0.00
3.41
4097
4398
7.010183
CGGATGACTTTACATTAAGATTCACGT
59.990
37.037
0.00
0.00
0.00
4.49
4098
4399
9.309516
GGATGACTTTACATTAAGATTCACGTA
57.690
33.333
0.00
0.00
0.00
3.57
4156
4457
6.093495
CACCATCGACTTAGGCATAAGAAAAA
59.907
38.462
23.93
7.31
40.86
1.94
4174
4475
8.650143
AAGAAAAATCTTGGCCAACTTAGATA
57.350
30.769
16.05
0.00
0.00
1.98
4309
4610
0.586802
GTTTGGTGCTTCTGTCGACC
59.413
55.000
14.12
0.00
0.00
4.79
4368
4669
4.201802
TGTTGTATAACTGATGCATGCACG
60.202
41.667
25.37
16.67
37.68
5.34
4626
4927
4.972875
GCCTGTGAGCAAGGCTAT
57.027
55.556
7.20
0.00
44.72
2.97
4671
4972
2.620251
TATGTAGGTGTGGCATGCTC
57.380
50.000
18.92
11.73
0.00
4.26
4760
5061
1.019673
AAGTGCACTGCTCTGTTGTG
58.980
50.000
22.49
0.00
32.56
3.33
4871
5172
2.492088
GTTCCTCCCTTACCATTGTTGC
59.508
50.000
0.00
0.00
0.00
4.17
4978
5279
4.701651
TGTTCAACCATGGATGATCAACTC
59.298
41.667
25.38
13.48
0.00
3.01
5002
5303
3.150767
GGTAGTCTGACTGAGTGTCTGT
58.849
50.000
20.19
0.00
45.54
3.41
5149
5450
6.456181
CGAAACTTTCAGGAGCATGATAAGTC
60.456
42.308
0.00
0.00
33.43
3.01
5389
5690
3.504863
CCATGCCTTCATTTTGTTCTCG
58.495
45.455
0.00
0.00
0.00
4.04
6079
6380
4.571984
CGATAAATTCCTCATCACACAGCA
59.428
41.667
0.00
0.00
0.00
4.41
6150
6451
7.980662
TGTTACAAATCCATTGCTATTCATTGG
59.019
33.333
0.00
0.00
43.95
3.16
6217
6518
2.961526
TGAACTAAGGCGAGATGGAC
57.038
50.000
0.00
0.00
0.00
4.02
6237
6538
2.256174
CTTCAAATGACCAAGCATGCG
58.744
47.619
13.01
0.00
0.00
4.73
6368
6675
5.823045
AGTCTTTCACGTTCCAATTCTTCTT
59.177
36.000
0.00
0.00
0.00
2.52
6411
6718
6.011122
TCTTAGTTAGATACTCCCTCCGTT
57.989
41.667
0.00
0.00
38.33
4.44
6414
6721
2.267174
TAGATACTCCCTCCGTTCCG
57.733
55.000
0.00
0.00
0.00
4.30
6416
6723
1.145325
AGATACTCCCTCCGTTCCGAT
59.855
52.381
0.00
0.00
0.00
4.18
6417
6724
1.962100
GATACTCCCTCCGTTCCGATT
59.038
52.381
0.00
0.00
0.00
3.34
6422
6729
1.753073
TCCCTCCGTTCCGATTTACTC
59.247
52.381
0.00
0.00
0.00
2.59
6427
6734
1.466360
CCGTTCCGATTTACTCGTCGT
60.466
52.381
0.00
0.00
46.18
4.34
6428
6735
1.576246
CGTTCCGATTTACTCGTCGTG
59.424
52.381
0.00
0.00
46.18
4.35
6430
6737
1.167851
TCCGATTTACTCGTCGTGGT
58.832
50.000
0.00
0.00
46.18
4.16
6431
6738
1.541147
TCCGATTTACTCGTCGTGGTT
59.459
47.619
0.00
0.00
46.18
3.67
6432
6739
2.030007
TCCGATTTACTCGTCGTGGTTT
60.030
45.455
0.00
0.00
46.18
3.27
6434
6741
3.919804
CCGATTTACTCGTCGTGGTTTTA
59.080
43.478
0.00
0.00
46.18
1.52
6435
6742
4.030977
CCGATTTACTCGTCGTGGTTTTAG
59.969
45.833
0.00
0.00
46.18
1.85
6436
6743
4.618489
CGATTTACTCGTCGTGGTTTTAGT
59.382
41.667
0.00
0.00
42.56
2.24
6438
6745
5.640218
TTTACTCGTCGTGGTTTTAGTTG
57.360
39.130
0.00
0.00
0.00
3.16
6442
6749
4.812626
ACTCGTCGTGGTTTTAGTTGAAAT
59.187
37.500
0.00
0.00
0.00
2.17
6444
6751
6.121613
TCGTCGTGGTTTTAGTTGAAATTT
57.878
33.333
0.00
0.00
0.00
1.82
6447
6754
6.469595
CGTCGTGGTTTTAGTTGAAATTTGAA
59.530
34.615
0.00
0.00
0.00
2.69
6448
6755
7.512426
CGTCGTGGTTTTAGTTGAAATTTGAAC
60.512
37.037
12.02
12.02
0.00
3.18
6451
6758
9.291664
CGTGGTTTTAGTTGAAATTTGAACTAA
57.708
29.630
28.23
28.23
42.36
2.24
6458
6765
7.749539
AGTTGAAATTTGAACTAAAACCACG
57.250
32.000
19.68
0.00
32.83
4.94
6459
6766
7.540299
AGTTGAAATTTGAACTAAAACCACGA
58.460
30.769
19.68
0.00
32.83
4.35
6460
6767
7.486870
AGTTGAAATTTGAACTAAAACCACGAC
59.513
33.333
19.68
0.00
32.83
4.34
6461
6768
5.966503
TGAAATTTGAACTAAAACCACGACG
59.033
36.000
0.00
0.00
0.00
5.12
6462
6769
5.738118
AATTTGAACTAAAACCACGACGA
57.262
34.783
0.00
0.00
0.00
4.20
6463
6770
4.782252
TTTGAACTAAAACCACGACGAG
57.218
40.909
0.00
0.00
0.00
4.18
6466
6773
4.930963
TGAACTAAAACCACGACGAGTAA
58.069
39.130
0.00
0.00
0.00
2.24
6467
6774
5.347342
TGAACTAAAACCACGACGAGTAAA
58.653
37.500
0.00
0.00
0.00
2.01
6470
6777
5.531634
ACTAAAACCACGACGAGTAAATCA
58.468
37.500
0.00
0.00
0.00
2.57
6471
6778
4.985044
AAAACCACGACGAGTAAATCAG
57.015
40.909
0.00
0.00
0.00
2.90
6472
6779
3.928727
AACCACGACGAGTAAATCAGA
57.071
42.857
0.00
0.00
0.00
3.27
6622
6961
4.246458
CCTAAGTGCCTCAGTGAAGTAAC
58.754
47.826
0.00
0.00
0.00
2.50
6754
7093
4.884164
AGCCCTGATTGTAAGTAAATCTGC
59.116
41.667
0.00
0.00
35.48
4.26
6760
7099
6.163476
TGATTGTAAGTAAATCTGCGACACT
58.837
36.000
0.00
0.00
35.48
3.55
6914
7253
2.689658
TCAACTTCTGGAGGAGGTGAA
58.310
47.619
0.00
0.00
34.40
3.18
7302
7642
6.650390
GGAATTGCACACACCATCTTTAATTT
59.350
34.615
0.00
0.00
0.00
1.82
7414
7754
7.573283
GCAACTTCTCTATCTTGTTTAACCCAC
60.573
40.741
0.00
0.00
0.00
4.61
7434
7774
6.961721
ACCCACTACACTTTTACTAGGGATTA
59.038
38.462
0.00
0.00
37.23
1.75
7885
8369
6.169094
ACTTGTATGAACTGATCTGAAGGTG
58.831
40.000
6.60
0.00
0.00
4.00
8240
8725
0.179234
TCGCTTTGACACCTTGTCCA
59.821
50.000
3.91
0.00
46.40
4.02
8330
8815
1.305297
TCTGCCCAGAGGTCGACAT
60.305
57.895
18.91
11.04
34.57
3.06
8368
8853
0.238553
GGTCGGCAGCAAAGAAGTTC
59.761
55.000
0.00
0.00
0.00
3.01
8506
8991
4.423625
ACAAGAGGTATAAGGGATGCAC
57.576
45.455
0.00
0.00
0.00
4.57
8606
9092
8.251750
TCATTCTTTACTGATAAAACCGTCTG
57.748
34.615
0.00
0.00
29.82
3.51
8714
9202
1.135774
GGTTGAAAGGCGAAATCCGTC
60.136
52.381
0.00
0.00
44.58
4.79
8761
9249
1.494721
ACTGGCCACCCACATAATAGG
59.505
52.381
0.00
0.00
35.79
2.57
8783
9271
2.561733
TTTCTGAGCACGTCCTATCG
57.438
50.000
0.00
0.00
0.00
2.92
8902
9390
0.387622
CACTGCCACATTTTGAGCCG
60.388
55.000
0.00
0.00
0.00
5.52
8981
9469
1.091537
AACGTGTGACCACAACAAGG
58.908
50.000
4.21
0.00
43.77
3.61
9148
9636
2.665649
ACCGATATCAAGCAACGACA
57.334
45.000
3.12
0.00
0.00
4.35
9151
9639
2.282555
CCGATATCAAGCAACGACAGTG
59.717
50.000
3.12
0.00
0.00
3.66
9157
9645
0.593128
AAGCAACGACAGTGCATTCC
59.407
50.000
0.00
0.00
0.00
3.01
9193
9681
9.423061
CATAAGGTTTAAAAGCATAAAAGCTGT
57.577
29.630
0.00
0.00
45.89
4.40
9194
9682
7.713764
AAGGTTTAAAAGCATAAAAGCTGTG
57.286
32.000
0.00
0.00
45.89
3.66
9201
9689
1.477700
GCATAAAAGCTGTGGGCATCA
59.522
47.619
0.00
0.00
44.79
3.07
9225
9713
7.706179
TCACAATTTGAACTCTGGTTTTCATTC
59.294
33.333
2.79
0.00
35.58
2.67
9244
9732
1.750780
GCCTTCTTACCTGCTGGCC
60.751
63.158
9.95
0.00
36.63
5.36
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
105
107
2.766828
CCTAGGGTCCGAAACTCTGAAT
59.233
50.000
0.00
0.00
39.75
2.57
446
479
3.264866
GACTCGTTCGACCGCACCT
62.265
63.158
0.00
0.00
0.00
4.00
581
624
0.321996
GAGGGGAGAGTGTTGTCCAC
59.678
60.000
0.00
0.00
40.47
4.02
582
625
0.191064
AGAGGGGAGAGTGTTGTCCA
59.809
55.000
0.00
0.00
38.50
4.02
583
626
0.899019
GAGAGGGGAGAGTGTTGTCC
59.101
60.000
0.00
0.00
36.03
4.02
584
627
0.528470
CGAGAGGGGAGAGTGTTGTC
59.472
60.000
0.00
0.00
0.00
3.18
585
628
0.178958
ACGAGAGGGGAGAGTGTTGT
60.179
55.000
0.00
0.00
0.00
3.32
586
629
0.969894
AACGAGAGGGGAGAGTGTTG
59.030
55.000
0.00
0.00
0.00
3.33
587
630
0.969894
CAACGAGAGGGGAGAGTGTT
59.030
55.000
0.00
0.00
0.00
3.32
588
631
1.536943
GCAACGAGAGGGGAGAGTGT
61.537
60.000
0.00
0.00
0.00
3.55
589
632
1.216710
GCAACGAGAGGGGAGAGTG
59.783
63.158
0.00
0.00
0.00
3.51
590
633
0.331954
TAGCAACGAGAGGGGAGAGT
59.668
55.000
0.00
0.00
0.00
3.24
591
634
1.339610
CATAGCAACGAGAGGGGAGAG
59.660
57.143
0.00
0.00
0.00
3.20
592
635
1.403814
CATAGCAACGAGAGGGGAGA
58.596
55.000
0.00
0.00
0.00
3.71
593
636
0.249657
GCATAGCAACGAGAGGGGAG
60.250
60.000
0.00
0.00
0.00
4.30
594
637
0.975556
TGCATAGCAACGAGAGGGGA
60.976
55.000
0.00
0.00
34.76
4.81
595
638
0.107456
ATGCATAGCAACGAGAGGGG
59.893
55.000
0.00
0.00
43.62
4.79
596
639
1.202568
TGATGCATAGCAACGAGAGGG
60.203
52.381
0.00
0.00
43.62
4.30
597
640
1.863454
GTGATGCATAGCAACGAGAGG
59.137
52.381
0.00
0.00
43.62
3.69
598
641
1.863454
GGTGATGCATAGCAACGAGAG
59.137
52.381
0.00
0.00
43.62
3.20
599
642
1.206849
TGGTGATGCATAGCAACGAGA
59.793
47.619
0.00
0.00
43.62
4.04
600
643
1.655484
TGGTGATGCATAGCAACGAG
58.345
50.000
0.00
0.00
43.62
4.18
601
644
1.941975
CATGGTGATGCATAGCAACGA
59.058
47.619
0.00
0.00
43.62
3.85
602
645
1.941975
TCATGGTGATGCATAGCAACG
59.058
47.619
0.00
1.35
43.62
4.10
603
646
3.819337
AGATCATGGTGATGCATAGCAAC
59.181
43.478
0.00
0.00
43.62
4.17
604
647
4.094830
AGATCATGGTGATGCATAGCAA
57.905
40.909
0.00
0.00
43.62
3.91
605
648
3.782656
AGATCATGGTGATGCATAGCA
57.217
42.857
0.00
4.86
44.86
3.49
606
649
3.366070
GCAAGATCATGGTGATGCATAGC
60.366
47.826
0.00
0.00
37.20
2.97
607
650
3.120304
CGCAAGATCATGGTGATGCATAG
60.120
47.826
0.00
0.00
37.20
2.23
608
651
2.809696
CGCAAGATCATGGTGATGCATA
59.190
45.455
0.00
0.00
37.20
3.14
609
652
1.607148
CGCAAGATCATGGTGATGCAT
59.393
47.619
0.00
0.00
37.20
3.96
610
653
1.018910
CGCAAGATCATGGTGATGCA
58.981
50.000
11.83
0.00
37.20
3.96
611
654
1.019673
ACGCAAGATCATGGTGATGC
58.980
50.000
0.00
3.06
37.20
3.91
612
655
2.011947
ACACGCAAGATCATGGTGATG
58.988
47.619
19.56
8.58
37.20
3.07
613
656
2.011947
CACACGCAAGATCATGGTGAT
58.988
47.619
19.56
0.00
40.34
3.06
614
657
1.441738
CACACGCAAGATCATGGTGA
58.558
50.000
19.56
0.00
43.62
4.02
615
658
0.179181
GCACACGCAAGATCATGGTG
60.179
55.000
14.17
14.17
43.62
4.17
616
659
1.638388
CGCACACGCAAGATCATGGT
61.638
55.000
0.00
0.00
43.62
3.55
617
660
1.061411
CGCACACGCAAGATCATGG
59.939
57.895
0.00
0.00
43.62
3.66
618
661
0.998669
TACGCACACGCAAGATCATG
59.001
50.000
0.00
0.00
45.53
3.07
619
662
1.280982
CTACGCACACGCAAGATCAT
58.719
50.000
0.00
0.00
45.53
2.45
620
663
0.735978
CCTACGCACACGCAAGATCA
60.736
55.000
0.00
0.00
45.53
2.92
621
664
0.457853
TCCTACGCACACGCAAGATC
60.458
55.000
0.00
0.00
45.53
2.75
622
665
0.037697
TTCCTACGCACACGCAAGAT
60.038
50.000
0.00
0.00
45.53
2.40
623
666
0.037697
ATTCCTACGCACACGCAAGA
60.038
50.000
0.00
0.00
45.53
3.02
624
667
0.796312
AATTCCTACGCACACGCAAG
59.204
50.000
0.00
0.00
45.53
4.01
625
668
1.231221
AAATTCCTACGCACACGCAA
58.769
45.000
0.00
0.00
45.53
4.85
626
669
1.231221
AAAATTCCTACGCACACGCA
58.769
45.000
0.00
0.00
45.53
5.24
627
670
2.325509
AAAAATTCCTACGCACACGC
57.674
45.000
0.00
0.00
45.53
5.34
644
687
5.185668
GGGGAACGCAGTAGTTTTAAAAA
57.814
39.130
1.31
0.00
45.00
1.94
645
688
4.834357
GGGGAACGCAGTAGTTTTAAAA
57.166
40.909
0.00
0.00
45.00
1.52
658
701
4.311606
ACATAAAAATTGTTGGGGAACGC
58.688
39.130
0.00
0.00
43.69
4.84
659
702
6.220201
AGAACATAAAAATTGTTGGGGAACG
58.780
36.000
0.00
0.00
37.43
3.95
660
703
8.341903
CAAAGAACATAAAAATTGTTGGGGAAC
58.658
33.333
0.00
0.00
37.43
3.62
661
704
8.267894
TCAAAGAACATAAAAATTGTTGGGGAA
58.732
29.630
0.00
0.00
37.43
3.97
662
705
7.796054
TCAAAGAACATAAAAATTGTTGGGGA
58.204
30.769
0.00
0.00
37.43
4.81
663
706
7.173047
CCTCAAAGAACATAAAAATTGTTGGGG
59.827
37.037
0.00
0.00
37.43
4.96
664
707
7.714813
ACCTCAAAGAACATAAAAATTGTTGGG
59.285
33.333
0.00
0.00
37.43
4.12
665
708
8.661352
ACCTCAAAGAACATAAAAATTGTTGG
57.339
30.769
0.00
0.00
37.43
3.77
679
722
9.052759
TCAGAAGTACAAAATACCTCAAAGAAC
57.947
33.333
0.00
0.00
0.00
3.01
715
758
8.727149
TCATCAAAAAGGACCTGGATCTATTAT
58.273
33.333
0.00
0.00
0.00
1.28
716
759
8.101309
TCATCAAAAAGGACCTGGATCTATTA
57.899
34.615
0.00
0.00
0.00
0.98
718
761
6.581388
TCATCAAAAAGGACCTGGATCTAT
57.419
37.500
0.00
0.00
0.00
1.98
719
762
6.387192
TTCATCAAAAAGGACCTGGATCTA
57.613
37.500
0.00
0.00
0.00
1.98
803
846
1.748493
CCCGAGTCCTCTCAAGAGAAG
59.252
57.143
8.62
0.00
44.74
2.85
804
847
1.840737
CCCGAGTCCTCTCAAGAGAA
58.159
55.000
8.62
0.00
44.74
2.87
1223
1276
2.436646
AAATGGCGAGCGAGGGTG
60.437
61.111
0.00
0.00
0.00
4.61
1263
1316
0.541998
TCCCCGTCTGAGCAAGAGAA
60.542
55.000
0.00
0.00
34.84
2.87
1277
1330
2.038975
TTGTCCTCCTCCTCCCCG
59.961
66.667
0.00
0.00
0.00
5.73
1322
1375
7.882791
TGCATAAGAATACCGTTCAATATGGAT
59.117
33.333
11.83
0.00
36.33
3.41
1523
1609
4.411869
TCCATATCCAGTATCTTGTTGCCA
59.588
41.667
0.00
0.00
0.00
4.92
1541
1627
1.004277
GACCCTGCAAACCACTCCATA
59.996
52.381
0.00
0.00
0.00
2.74
1577
1663
0.813184
CCTTCCGCAAGTGCATCATT
59.187
50.000
3.87
0.00
42.21
2.57
1603
1689
0.247736
GCGCTTCTTCTTCTCCCTCA
59.752
55.000
0.00
0.00
0.00
3.86
1648
1734
2.650116
ATCAGCCTCGTGAAGCGGT
61.650
57.895
0.00
0.00
41.72
5.68
2063
2149
1.707632
CTTCCTCACTGCAGTCTTCG
58.292
55.000
18.64
5.91
0.00
3.79
2120
2206
8.893563
TGAATACCCAAATAGAAGGTTTTGAT
57.106
30.769
0.00
0.00
35.34
2.57
2160
2246
7.151999
ACAAACTGTGTAAGATGAAACAACA
57.848
32.000
0.00
0.00
39.29
3.33
2201
2287
6.012858
TGCATTGATTAAGGTACTATAGGGGG
60.013
42.308
4.43
0.00
38.49
5.40
2410
2496
7.176515
TGTGCATACAGTTTATCACCTTTTGAT
59.823
33.333
0.00
0.00
39.15
2.57
2970
3058
2.124570
CGGGGCAGTGAATCCCTG
60.125
66.667
12.72
6.85
42.25
4.45
2987
3075
5.383130
GGTTTTTCGCTACTCATGTTCTTC
58.617
41.667
0.00
0.00
0.00
2.87
3059
3147
3.354467
AGTACAGCCTACTCCACTACAC
58.646
50.000
0.00
0.00
0.00
2.90
3221
3313
0.829990
TGGTTCTGATAGCGATGCCA
59.170
50.000
0.00
0.00
0.00
4.92
3588
3686
2.679837
CCTGTCATATGCACCAACAGAC
59.320
50.000
18.36
8.57
39.72
3.51
3719
3818
7.015292
AGAGCGGATTATTTAGACTATGTGGAA
59.985
37.037
0.00
0.00
0.00
3.53
3834
3933
0.398696
TGCAGTACGGGTTGGATTGT
59.601
50.000
0.00
0.00
0.00
2.71
4012
4111
8.522178
AATCACAAACGACTTTTAACAAAACA
57.478
26.923
0.00
0.00
0.00
2.83
4098
4399
9.136323
GTGTGATAAAATATTTTCCCTCATCCT
57.864
33.333
16.56
0.00
0.00
3.24
4368
4669
4.243007
AGTAAAGTGCCAATGTTGCTTC
57.757
40.909
0.00
0.00
0.00
3.86
4429
4730
5.880332
TGCTCGGCATTAAGACTAAAATCTT
59.120
36.000
0.00
0.00
36.85
2.40
4448
4749
7.964559
TCAAGAATCACAAAATCTAAATGCTCG
59.035
33.333
0.00
0.00
0.00
5.03
4626
4927
2.299013
ACGACTTACCATGTGAAGCTCA
59.701
45.455
0.00
0.00
0.00
4.26
4671
4972
2.276201
TGAACACAAGGAACACACTCG
58.724
47.619
0.00
0.00
0.00
4.18
4844
5145
5.253096
ACAATGGTAAGGGAGGAACAGTATT
59.747
40.000
0.00
0.00
0.00
1.89
4948
5249
5.078949
TCATCCATGGTTGAACAATGTTCT
58.921
37.500
24.30
3.52
0.00
3.01
4978
5279
4.167554
GACACTCAGTCAGACTACCAAG
57.832
50.000
1.67
1.68
46.77
3.61
5389
5690
4.023707
GGTCAATGTCAGCAATAGGTATGC
60.024
45.833
0.00
0.00
44.15
3.14
5451
5752
6.071984
TGGCAAACAGGAATTTTTACCTCTA
58.928
36.000
0.00
0.00
33.91
2.43
6079
6380
2.564947
GGTCATAGAGCAGGATCCGAAT
59.435
50.000
5.98
0.00
0.00
3.34
6217
6518
2.256174
CGCATGCTTGGTCATTTGAAG
58.744
47.619
17.13
0.00
0.00
3.02
6237
6538
9.916397
GAATATGCGTTAATTAGTGCCATATAC
57.084
33.333
8.11
0.00
0.00
1.47
6414
6721
6.144402
TCAACTAAAACCACGACGAGTAAATC
59.856
38.462
0.00
0.00
0.00
2.17
6416
6723
5.347342
TCAACTAAAACCACGACGAGTAAA
58.653
37.500
0.00
0.00
0.00
2.01
6417
6724
4.930963
TCAACTAAAACCACGACGAGTAA
58.069
39.130
0.00
0.00
0.00
2.24
6422
6729
5.966503
TCAAATTTCAACTAAAACCACGACG
59.033
36.000
0.00
0.00
0.00
5.12
6432
6739
9.291664
CGTGGTTTTAGTTCAAATTTCAACTAA
57.708
29.630
19.70
19.70
41.31
2.24
6434
6741
7.486870
GTCGTGGTTTTAGTTCAAATTTCAACT
59.513
33.333
12.32
12.32
36.75
3.16
6435
6742
7.512426
CGTCGTGGTTTTAGTTCAAATTTCAAC
60.512
37.037
0.00
0.00
0.00
3.18
6436
6743
6.469595
CGTCGTGGTTTTAGTTCAAATTTCAA
59.530
34.615
0.00
0.00
0.00
2.69
6438
6745
6.193761
TCGTCGTGGTTTTAGTTCAAATTTC
58.806
36.000
0.00
0.00
0.00
2.17
6442
6749
4.183101
ACTCGTCGTGGTTTTAGTTCAAA
58.817
39.130
0.00
0.00
0.00
2.69
6444
6751
3.441496
ACTCGTCGTGGTTTTAGTTCA
57.559
42.857
0.00
0.00
0.00
3.18
6447
6754
5.531634
TGATTTACTCGTCGTGGTTTTAGT
58.468
37.500
0.00
0.00
0.00
2.24
6448
6755
5.860182
TCTGATTTACTCGTCGTGGTTTTAG
59.140
40.000
0.00
0.00
0.00
1.85
6451
6758
4.247267
TCTGATTTACTCGTCGTGGTTT
57.753
40.909
0.00
0.00
0.00
3.27
6452
6759
3.928727
TCTGATTTACTCGTCGTGGTT
57.071
42.857
0.00
0.00
0.00
3.67
6453
6760
3.572584
GTTCTGATTTACTCGTCGTGGT
58.427
45.455
0.00
0.00
0.00
4.16
6454
6761
2.592897
CGTTCTGATTTACTCGTCGTGG
59.407
50.000
0.00
0.00
0.00
4.94
6455
6762
2.592897
CCGTTCTGATTTACTCGTCGTG
59.407
50.000
0.00
0.00
0.00
4.35
6457
6764
3.099362
CTCCGTTCTGATTTACTCGTCG
58.901
50.000
0.00
0.00
0.00
5.12
6458
6765
3.436496
CCTCCGTTCTGATTTACTCGTC
58.564
50.000
0.00
0.00
0.00
4.20
6459
6766
2.165845
CCCTCCGTTCTGATTTACTCGT
59.834
50.000
0.00
0.00
0.00
4.18
6460
6767
2.426024
TCCCTCCGTTCTGATTTACTCG
59.574
50.000
0.00
0.00
0.00
4.18
6461
6768
3.447944
ACTCCCTCCGTTCTGATTTACTC
59.552
47.826
0.00
0.00
0.00
2.59
6462
6769
3.442076
ACTCCCTCCGTTCTGATTTACT
58.558
45.455
0.00
0.00
0.00
2.24
6463
6770
3.889520
ACTCCCTCCGTTCTGATTTAC
57.110
47.619
0.00
0.00
0.00
2.01
6466
6773
5.148502
ACATATACTCCCTCCGTTCTGATT
58.851
41.667
0.00
0.00
0.00
2.57
6467
6774
4.742012
ACATATACTCCCTCCGTTCTGAT
58.258
43.478
0.00
0.00
0.00
2.90
6470
6777
6.014499
CCATTAACATATACTCCCTCCGTTCT
60.014
42.308
0.00
0.00
0.00
3.01
6471
6778
6.164176
CCATTAACATATACTCCCTCCGTTC
58.836
44.000
0.00
0.00
0.00
3.95
6472
6779
5.605488
ACCATTAACATATACTCCCTCCGTT
59.395
40.000
0.00
0.00
0.00
4.44
6754
7093
2.943033
AGTTTTGACAGGGAAAGTGTCG
59.057
45.455
0.00
0.00
46.21
4.35
6760
7099
5.445069
TCATCTCAAGTTTTGACAGGGAAA
58.555
37.500
0.00
0.00
35.46
3.13
6914
7253
2.697147
AAACCACATGCCTGGCTCGT
62.697
55.000
21.03
13.70
34.20
4.18
6980
7319
4.281941
AGGAGCATCAATTAGCATACTCGA
59.718
41.667
0.00
0.00
36.25
4.04
7395
7735
7.612677
AGTGTAGTGGGTTAAACAAGATAGAG
58.387
38.462
0.00
0.00
0.00
2.43
7441
7781
9.968743
CTCAACCAAATAAAACGAATCTACTAC
57.031
33.333
0.00
0.00
0.00
2.73
7885
8369
4.405358
TCCATTTCCCATATTTGGCAGAAC
59.595
41.667
0.00
0.00
42.15
3.01
8240
8725
5.630415
TGGATATCCCACGAGAAGAAATT
57.370
39.130
19.34
0.00
40.82
1.82
8272
8757
4.985413
ACATCCTGCATACAAAAATGTCG
58.015
39.130
0.00
0.00
0.00
4.35
8330
8815
1.819288
CCACTCGGCAGACTTCTTAGA
59.181
52.381
0.00
0.00
0.00
2.10
8368
8853
7.148069
GGATCCTCCTTTGGTATTGTTTTGTAG
60.148
40.741
3.84
0.00
32.53
2.74
8506
8991
2.224281
TGTAACAGAAGTGGCAGAGTGG
60.224
50.000
0.00
0.00
0.00
4.00
8606
9092
5.784750
GCCAAACAATTAGAAGAAATGGC
57.215
39.130
0.00
0.00
43.31
4.40
8714
9202
4.935702
TGTCTGTTTGGCTTCAATTTGAG
58.064
39.130
0.00
0.00
0.00
3.02
8761
9249
2.080286
TAGGACGTGCTCAGAAAAGC
57.920
50.000
14.74
0.00
42.82
3.51
8902
9390
1.266989
GGTAAGTGGTCACAGCAAAGC
59.733
52.381
3.82
0.00
0.00
3.51
8981
9469
3.859411
TTGTTTCACTGTGAACAACCC
57.141
42.857
21.95
8.97
35.89
4.11
9151
9639
4.755123
ACCTTATGTTATGCGTAGGAATGC
59.245
41.667
0.00
0.00
38.18
3.56
9157
9645
8.178964
TGCTTTTAAACCTTATGTTATGCGTAG
58.821
33.333
0.00
0.00
35.67
3.51
9193
9681
3.256383
CAGAGTTCAAATTGTGATGCCCA
59.744
43.478
0.00
0.00
35.70
5.36
9194
9682
3.367703
CCAGAGTTCAAATTGTGATGCCC
60.368
47.826
0.00
0.00
35.70
5.36
9201
9689
6.697019
CGAATGAAAACCAGAGTTCAAATTGT
59.303
34.615
0.00
0.00
37.31
2.71
9203
9691
5.691754
GCGAATGAAAACCAGAGTTCAAATT
59.308
36.000
0.00
0.00
37.31
1.82
9204
9692
5.222631
GCGAATGAAAACCAGAGTTCAAAT
58.777
37.500
0.00
0.00
37.31
2.32
9225
9713
2.109126
GCCAGCAGGTAAGAAGGCG
61.109
63.158
0.00
0.00
37.19
5.52
9368
9858
2.427095
GCAAGGTTTGTGTTCTTCCACT
59.573
45.455
0.00
0.00
36.30
4.00
9369
9859
2.165437
TGCAAGGTTTGTGTTCTTCCAC
59.835
45.455
0.00
0.00
35.86
4.02
9370
9860
2.451490
TGCAAGGTTTGTGTTCTTCCA
58.549
42.857
0.00
0.00
0.00
3.53
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.