Multiple sequence alignment - TraesCS6D01G087200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G087200 chr6D 100.000 8318 0 0 857 9174 52683160 52691477 0.000000e+00 15361.0
1 TraesCS6D01G087200 chr6D 100.000 412 0 0 1 412 52682304 52682715 0.000000e+00 761.0
2 TraesCS6D01G087200 chr6D 83.641 758 105 12 4374 5129 52686314 52687054 0.000000e+00 695.0
3 TraesCS6D01G087200 chr6D 83.641 758 105 12 4011 4751 52686677 52687432 0.000000e+00 695.0
4 TraesCS6D01G087200 chr6D 85.799 338 43 3 5978 6311 52688161 52688497 4.070000e-93 353.0
5 TraesCS6D01G087200 chr6D 85.799 338 43 3 5858 6194 52688281 52688614 4.070000e-93 353.0
6 TraesCS6D01G087200 chr6D 93.478 138 8 1 1 138 448338053 448337917 4.340000e-48 204.0
7 TraesCS6D01G087200 chr6A 95.220 6381 263 23 1879 8236 63560057 63566418 0.000000e+00 10056.0
8 TraesCS6D01G087200 chr6A 92.110 1052 48 17 857 1882 63558904 63559946 0.000000e+00 1450.0
9 TraesCS6D01G087200 chr6A 84.524 756 105 8 4374 5129 63562190 63562933 0.000000e+00 737.0
10 TraesCS6D01G087200 chr6A 82.827 757 113 10 4011 4751 63562556 63563311 0.000000e+00 662.0
11 TraesCS6D01G087200 chr6A 83.636 440 54 14 8740 9174 63567560 63567986 1.860000e-106 398.0
12 TraesCS6D01G087200 chr6A 87.319 276 24 5 8340 8611 63566499 63566767 1.160000e-78 305.0
13 TraesCS6D01G087200 chr6A 91.589 214 7 5 205 407 63558452 63558665 1.510000e-72 285.0
14 TraesCS6D01G087200 chr6A 92.216 167 7 1 1745 1905 549486963 549486797 1.990000e-56 231.0
15 TraesCS6D01G087200 chr6A 89.167 120 13 0 5958 6077 63563816 63563935 5.740000e-32 150.0
16 TraesCS6D01G087200 chr6A 88.235 119 14 0 5634 5752 63564260 63564378 9.600000e-30 143.0
17 TraesCS6D01G087200 chr6B 94.910 5698 204 35 2581 8236 119527602 119533255 0.000000e+00 8837.0
18 TraesCS6D01G087200 chr6B 92.212 1040 53 18 857 1883 119525786 119526810 0.000000e+00 1447.0
19 TraesCS6D01G087200 chr6B 93.386 635 28 6 1879 2500 119526969 119527602 0.000000e+00 928.0
20 TraesCS6D01G087200 chr6B 83.641 758 108 11 4374 5129 119529003 119529746 0.000000e+00 699.0
21 TraesCS6D01G087200 chr6B 82.563 757 115 10 4011 4751 119529369 119530124 0.000000e+00 651.0
22 TraesCS6D01G087200 chr6B 82.366 448 57 16 8740 9174 119816990 119817428 4.050000e-98 370.0
23 TraesCS6D01G087200 chr6B 86.095 338 42 3 5978 6311 119530850 119531186 8.760000e-95 359.0
24 TraesCS6D01G087200 chr6B 86.758 219 26 1 5856 6074 119531088 119531303 3.310000e-59 241.0
25 TraesCS6D01G087200 chr6B 90.588 170 12 3 205 371 119525245 119525413 1.200000e-53 222.0
26 TraesCS6D01G087200 chr6B 92.810 153 11 0 1 153 712458094 712458246 1.200000e-53 222.0
27 TraesCS6D01G087200 chr3D 94.595 185 4 1 1724 1902 570946730 570946914 1.950000e-71 281.0
28 TraesCS6D01G087200 chr3D 85.714 56 1 4 5275 5324 567088198 567088144 1.700000e-02 52.8
29 TraesCS6D01G087200 chr2A 94.054 185 5 1 1724 1902 725178413 725178597 9.070000e-70 276.0
30 TraesCS6D01G087200 chr2A 95.385 130 6 0 1 130 695287322 695287193 3.360000e-49 207.0
31 TraesCS6D01G087200 chr2A 82.707 133 17 4 8144 8272 549290423 549290293 7.530000e-21 113.0
32 TraesCS6D01G087200 chr5D 93.085 188 6 2 1724 1905 557305515 557305329 1.520000e-67 268.0
33 TraesCS6D01G087200 chr7A 92.073 164 7 1 1745 1902 576478600 576478763 9.270000e-55 226.0
34 TraesCS6D01G087200 chr7A 84.483 116 14 2 8143 8256 579808524 579808411 2.710000e-20 111.0
35 TraesCS6D01G087200 chr4A 91.018 167 9 1 1745 1905 715473902 715473736 4.310000e-53 220.0
36 TraesCS6D01G087200 chr4A 95.556 45 2 0 131 175 171220366 171220322 1.280000e-08 73.1
37 TraesCS6D01G087200 chr3B 91.018 167 9 1 1745 1905 712413160 712412994 4.310000e-53 220.0
38 TraesCS6D01G087200 chr3B 82.443 131 17 4 8146 8272 528176337 528176209 9.740000e-20 110.0
39 TraesCS6D01G087200 chr3A 96.154 130 5 0 1 130 6218992 6218863 7.220000e-51 213.0
40 TraesCS6D01G087200 chr3A 95.385 130 6 0 1 130 5880281 5880152 3.360000e-49 207.0
41 TraesCS6D01G087200 chr3A 95.385 130 6 0 1 130 5910632 5910503 3.360000e-49 207.0
42 TraesCS6D01G087200 chr3A 95.385 130 6 0 1 130 601354688 601354817 3.360000e-49 207.0
43 TraesCS6D01G087200 chr3A 86.857 175 22 1 1 174 86609933 86610107 2.610000e-45 195.0
44 TraesCS6D01G087200 chr3A 83.721 129 15 4 8146 8272 72407168 72407044 5.820000e-22 117.0
45 TraesCS6D01G087200 chr3A 85.714 56 1 4 5275 5324 700699310 700699364 1.700000e-02 52.8
46 TraesCS6D01G087200 chr5B 96.124 129 5 0 1 129 546872642 546872770 2.600000e-50 211.0
47 TraesCS6D01G087200 chr7D 84.211 133 15 4 8144 8272 575594133 575594003 3.480000e-24 124.0
48 TraesCS6D01G087200 chr7D 82.677 127 18 3 8144 8269 476678472 476678595 9.740000e-20 110.0
49 TraesCS6D01G087200 chr2D 82.222 135 18 3 8144 8274 602511358 602511490 2.710000e-20 111.0
50 TraesCS6D01G087200 chr4D 94.118 51 2 1 128 177 433702075 433702025 9.880000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G087200 chr6D 52682304 52691477 9173 False 8061.000000 15361 100.000000 1 9174 2 chr6D.!!$F1 9173
1 TraesCS6D01G087200 chr6D 52686314 52688614 2300 False 524.000000 695 84.720000 4011 6311 4 chr6D.!!$F2 2300
2 TraesCS6D01G087200 chr6A 63558452 63566418 7966 False 3930.333333 10056 92.973000 205 8236 3 chr6A.!!$F1 8031
3 TraesCS6D01G087200 chr6A 63562190 63567986 5796 False 399.166667 737 85.951333 4011 9174 6 chr6A.!!$F2 5163
4 TraesCS6D01G087200 chr6B 119525245 119533255 8010 False 2858.500000 8837 92.774000 205 8236 4 chr6B.!!$F3 8031
5 TraesCS6D01G087200 chr6B 119529003 119531303 2300 False 487.500000 699 84.764250 4011 6311 4 chr6B.!!$F4 2300

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.101759 CTTATTCGCGGACGGAGGAA 59.898 55.000 6.13 0.0 40.63 3.36 F
126 127 0.101759 TTATTCGCGGACGGAGGAAG 59.898 55.000 6.13 0.0 40.63 3.46 F
165 166 0.178941 AGTTACTCCCCACCGTGACT 60.179 55.000 0.00 0.0 0.00 3.41 F
1122 1159 0.232303 ACGCTTCTTGTTTCTTCGCG 59.768 50.000 0.00 0.0 44.06 5.87 F
1479 1532 1.003718 GGTAACGGCTTGCCACTCT 60.004 57.895 12.45 0.0 32.49 3.24 F
2263 2515 1.035139 CTTTTGGCAGCCAGTCAGTT 58.965 50.000 15.50 0.0 33.81 3.16 F
3008 3272 0.320421 AAGTGTGCCGCGTATCTTGT 60.320 50.000 4.92 0.0 0.00 3.16 F
3009 3273 0.528924 AGTGTGCCGCGTATCTTGTA 59.471 50.000 4.92 0.0 0.00 2.41 F
3855 4121 1.608283 CCCGTTCAAACTCCTCCTGTC 60.608 57.143 0.00 0.0 0.00 3.51 F
6441 6710 2.713708 AGGGATAGAAGGAAATGGAGCC 59.286 50.000 0.00 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1268 1306 0.107831 CAAGGAAACGGACCCTGTCA 59.892 55.000 0.00 0.00 33.68 3.58 R
1638 1694 0.552848 GGTCATGGGTCATGGGTCAT 59.447 55.000 7.88 0.00 41.66 3.06 R
1641 1697 0.846427 ACAGGTCATGGGTCATGGGT 60.846 55.000 7.88 0.57 41.66 4.51 R
2249 2501 0.253044 TATGGAACTGACTGGCTGCC 59.747 55.000 12.87 12.87 0.00 4.85 R
2987 3251 1.076332 AAGATACGCGGCACACTTTC 58.924 50.000 12.47 0.00 0.00 2.62 R
3855 4121 4.141756 ACTTCCTCTCTATTGCCACTGATG 60.142 45.833 0.00 0.00 0.00 3.07 R
6441 6710 2.420022 GTCCAATGTGATCAAGGTTCCG 59.580 50.000 0.00 0.00 0.00 4.30 R
6528 6797 0.179059 TGCAAACTCGTGCCTTCAGA 60.179 50.000 0.00 0.00 44.26 3.27 R
6536 6805 1.197721 GTGAATCCCTGCAAACTCGTG 59.802 52.381 0.00 0.00 0.00 4.35 R
8319 8633 0.105039 CACCCGCTCATAGTCTTCCC 59.895 60.000 0.00 0.00 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 8.677148 TTTGACTTAGAACAAAAGCTAGATGT 57.323 30.769 0.00 0.00 33.90 3.06
103 104 9.772973 TTTGACTTAGAACAAAAGCTAGATGTA 57.227 29.630 0.00 0.00 33.90 2.29
104 105 8.758633 TGACTTAGAACAAAAGCTAGATGTAC 57.241 34.615 0.00 0.00 0.00 2.90
105 106 8.364894 TGACTTAGAACAAAAGCTAGATGTACA 58.635 33.333 0.00 0.00 0.00 2.90
106 107 8.535690 ACTTAGAACAAAAGCTAGATGTACAC 57.464 34.615 0.00 0.00 0.00 2.90
107 108 8.368668 ACTTAGAACAAAAGCTAGATGTACACT 58.631 33.333 0.00 0.13 0.00 3.55
108 109 9.209175 CTTAGAACAAAAGCTAGATGTACACTT 57.791 33.333 0.00 0.00 0.00 3.16
111 112 9.726438 AGAACAAAAGCTAGATGTACACTTATT 57.274 29.630 0.00 0.00 0.00 1.40
112 113 9.974750 GAACAAAAGCTAGATGTACACTTATTC 57.025 33.333 0.00 0.00 0.00 1.75
113 114 8.186178 ACAAAAGCTAGATGTACACTTATTCG 57.814 34.615 0.00 0.00 0.00 3.34
114 115 6.830114 AAAGCTAGATGTACACTTATTCGC 57.170 37.500 0.00 0.00 0.00 4.70
115 116 4.537965 AGCTAGATGTACACTTATTCGCG 58.462 43.478 0.00 0.00 0.00 5.87
116 117 3.669122 GCTAGATGTACACTTATTCGCGG 59.331 47.826 6.13 0.00 0.00 6.46
117 118 4.556104 GCTAGATGTACACTTATTCGCGGA 60.556 45.833 6.13 0.00 0.00 5.54
118 119 3.703420 AGATGTACACTTATTCGCGGAC 58.297 45.455 6.13 0.00 0.00 4.79
119 120 1.898938 TGTACACTTATTCGCGGACG 58.101 50.000 6.13 0.00 42.01 4.79
120 121 1.194495 GTACACTTATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
121 122 1.093972 TACACTTATTCGCGGACGGA 58.906 50.000 6.13 0.00 40.63 4.69
122 123 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.00 40.63 4.63
123 124 0.870307 CACTTATTCGCGGACGGAGG 60.870 60.000 6.13 0.00 40.63 4.30
124 125 1.033746 ACTTATTCGCGGACGGAGGA 61.034 55.000 6.13 0.00 40.63 3.71
125 126 0.101759 CTTATTCGCGGACGGAGGAA 59.898 55.000 6.13 0.00 40.63 3.36
126 127 0.101759 TTATTCGCGGACGGAGGAAG 59.898 55.000 6.13 0.00 40.63 3.46
127 128 1.033746 TATTCGCGGACGGAGGAAGT 61.034 55.000 6.13 0.00 40.63 3.01
128 129 1.033746 ATTCGCGGACGGAGGAAGTA 61.034 55.000 6.13 0.00 40.63 2.24
129 130 1.033746 TTCGCGGACGGAGGAAGTAT 61.034 55.000 6.13 0.00 40.63 2.12
130 131 1.299165 CGCGGACGGAGGAAGTATG 60.299 63.158 0.00 0.00 34.97 2.39
131 132 1.591863 GCGGACGGAGGAAGTATGC 60.592 63.158 0.00 0.00 0.00 3.14
132 133 1.813859 CGGACGGAGGAAGTATGCA 59.186 57.895 0.00 0.00 0.00 3.96
133 134 0.389391 CGGACGGAGGAAGTATGCAT 59.611 55.000 3.79 3.79 0.00 3.96
134 135 1.869754 CGGACGGAGGAAGTATGCATG 60.870 57.143 10.16 0.00 0.00 4.06
135 136 1.139058 GGACGGAGGAAGTATGCATGT 59.861 52.381 10.16 0.00 0.00 3.21
136 137 2.420129 GGACGGAGGAAGTATGCATGTT 60.420 50.000 10.16 2.25 0.00 2.71
137 138 3.181469 GGACGGAGGAAGTATGCATGTTA 60.181 47.826 10.16 0.00 0.00 2.41
138 139 3.793559 ACGGAGGAAGTATGCATGTTAC 58.206 45.455 10.16 3.47 0.00 2.50
139 140 3.451178 ACGGAGGAAGTATGCATGTTACT 59.549 43.478 10.16 8.79 0.00 2.24
140 141 4.647853 ACGGAGGAAGTATGCATGTTACTA 59.352 41.667 10.16 0.00 29.86 1.82
141 142 5.304614 ACGGAGGAAGTATGCATGTTACTAT 59.695 40.000 10.16 0.00 29.86 2.12
142 143 6.183360 ACGGAGGAAGTATGCATGTTACTATT 60.183 38.462 10.16 0.00 29.86 1.73
143 144 7.014905 ACGGAGGAAGTATGCATGTTACTATTA 59.985 37.037 10.16 0.00 29.86 0.98
144 145 8.035394 CGGAGGAAGTATGCATGTTACTATTAT 58.965 37.037 10.16 0.00 29.86 1.28
155 156 9.991906 TGCATGTTACTATTATAAGTTACTCCC 57.008 33.333 0.00 0.00 31.82 4.30
156 157 9.433153 GCATGTTACTATTATAAGTTACTCCCC 57.567 37.037 0.00 0.00 31.82 4.81
159 160 8.927411 TGTTACTATTATAAGTTACTCCCCACC 58.073 37.037 0.00 0.00 31.82 4.61
160 161 6.661304 ACTATTATAAGTTACTCCCCACCG 57.339 41.667 0.00 0.00 0.00 4.94
161 162 6.138967 ACTATTATAAGTTACTCCCCACCGT 58.861 40.000 0.00 0.00 0.00 4.83
162 163 4.741321 TTATAAGTTACTCCCCACCGTG 57.259 45.455 0.00 0.00 0.00 4.94
163 164 2.307496 TAAGTTACTCCCCACCGTGA 57.693 50.000 0.00 0.00 0.00 4.35
164 165 0.683412 AAGTTACTCCCCACCGTGAC 59.317 55.000 0.00 0.00 0.00 3.67
165 166 0.178941 AGTTACTCCCCACCGTGACT 60.179 55.000 0.00 0.00 0.00 3.41
166 167 1.076024 AGTTACTCCCCACCGTGACTA 59.924 52.381 0.00 0.00 29.55 2.59
167 168 1.475682 GTTACTCCCCACCGTGACTAG 59.524 57.143 0.00 0.00 0.00 2.57
168 169 0.700564 TACTCCCCACCGTGACTAGT 59.299 55.000 0.00 0.00 0.00 2.57
169 170 0.611340 ACTCCCCACCGTGACTAGTC 60.611 60.000 16.32 16.32 0.00 2.59
170 171 0.323542 CTCCCCACCGTGACTAGTCT 60.324 60.000 23.01 0.19 0.00 3.24
171 172 0.994247 TCCCCACCGTGACTAGTCTA 59.006 55.000 23.01 7.59 0.00 2.59
172 173 1.355381 TCCCCACCGTGACTAGTCTAA 59.645 52.381 23.01 1.36 0.00 2.10
173 174 1.749634 CCCCACCGTGACTAGTCTAAG 59.250 57.143 23.01 13.41 0.00 2.18
174 175 1.134560 CCCACCGTGACTAGTCTAAGC 59.865 57.143 23.01 10.07 0.00 3.09
175 176 1.816835 CCACCGTGACTAGTCTAAGCA 59.183 52.381 23.01 0.51 0.00 3.91
176 177 2.230508 CCACCGTGACTAGTCTAAGCAA 59.769 50.000 23.01 0.00 0.00 3.91
177 178 3.305813 CCACCGTGACTAGTCTAAGCAAA 60.306 47.826 23.01 0.00 0.00 3.68
178 179 3.921021 CACCGTGACTAGTCTAAGCAAAG 59.079 47.826 23.01 4.72 0.00 2.77
179 180 2.924290 CCGTGACTAGTCTAAGCAAAGC 59.076 50.000 23.01 0.00 0.00 3.51
180 181 2.924290 CGTGACTAGTCTAAGCAAAGCC 59.076 50.000 23.01 0.00 0.00 4.35
181 182 3.263261 GTGACTAGTCTAAGCAAAGCCC 58.737 50.000 23.01 0.00 0.00 5.19
182 183 2.094182 TGACTAGTCTAAGCAAAGCCCG 60.094 50.000 23.01 0.00 0.00 6.13
183 184 1.207329 ACTAGTCTAAGCAAAGCCCGG 59.793 52.381 0.00 0.00 0.00 5.73
184 185 1.207329 CTAGTCTAAGCAAAGCCCGGT 59.793 52.381 0.00 0.00 0.00 5.28
185 186 0.400594 AGTCTAAGCAAAGCCCGGTT 59.599 50.000 0.00 0.00 0.00 4.44
186 187 1.202891 AGTCTAAGCAAAGCCCGGTTT 60.203 47.619 0.00 0.00 0.00 3.27
187 188 2.039348 AGTCTAAGCAAAGCCCGGTTTA 59.961 45.455 0.00 0.00 0.00 2.01
188 189 3.014623 GTCTAAGCAAAGCCCGGTTTAT 58.985 45.455 0.00 0.00 0.00 1.40
189 190 3.442625 GTCTAAGCAAAGCCCGGTTTATT 59.557 43.478 0.00 0.00 0.00 1.40
190 191 4.082408 GTCTAAGCAAAGCCCGGTTTATTT 60.082 41.667 0.00 0.00 0.00 1.40
191 192 5.124297 GTCTAAGCAAAGCCCGGTTTATTTA 59.876 40.000 0.00 0.00 0.00 1.40
192 193 3.861276 AGCAAAGCCCGGTTTATTTAC 57.139 42.857 0.00 0.00 0.00 2.01
193 194 2.494471 AGCAAAGCCCGGTTTATTTACC 59.506 45.455 0.00 0.00 34.72 2.85
202 203 3.416119 GGTTTATTTACCGCTTGGAGC 57.584 47.619 0.00 0.00 38.02 4.70
203 204 2.098607 GGTTTATTTACCGCTTGGAGCC 59.901 50.000 0.00 0.00 38.18 4.70
281 295 2.158519 AGGGACGGTCTCCAAAATTTGT 60.159 45.455 3.95 0.00 41.63 2.83
300 314 1.344438 GTTGCCTTTTCCCTCCCAAAG 59.656 52.381 0.00 0.00 0.00 2.77
331 345 4.356436 CAAAATCCCCATTTTCCCTCTCT 58.644 43.478 0.00 0.00 39.75 3.10
390 416 3.601685 CACCCACCACCGCAAACC 61.602 66.667 0.00 0.00 0.00 3.27
931 967 1.961180 CTCCGTCTCCCATTTCGCCT 61.961 60.000 0.00 0.00 0.00 5.52
952 988 2.585153 GAACCCGGCCCTTCTCTC 59.415 66.667 0.00 0.00 0.00 3.20
1097 1134 1.138883 TGAGTCTCGCATACCACGC 59.861 57.895 0.00 0.00 0.00 5.34
1103 1140 4.155733 CGCATACCACGCCTCCCA 62.156 66.667 0.00 0.00 0.00 4.37
1122 1159 0.232303 ACGCTTCTTGTTTCTTCGCG 59.768 50.000 0.00 0.00 44.06 5.87
1268 1306 2.737376 GGTTTTCTCGCCGACGCT 60.737 61.111 0.00 0.00 39.84 5.07
1300 1338 7.876582 GGTCCGTTTCCTTGCTAGTAATATATT 59.123 37.037 2.97 2.97 0.00 1.28
1384 1429 4.965119 ATTTACTGGCCAACGAAAGATC 57.035 40.909 7.01 0.00 0.00 2.75
1479 1532 1.003718 GGTAACGGCTTGCCACTCT 60.004 57.895 12.45 0.00 32.49 3.24
1480 1533 1.298859 GGTAACGGCTTGCCACTCTG 61.299 60.000 12.45 0.00 32.49 3.35
1546 1599 7.178451 ACCTTTAGTTGATCCCCTTTAAACATG 59.822 37.037 0.00 0.00 0.00 3.21
1549 1602 5.892348 AGTTGATCCCCTTTAAACATGACT 58.108 37.500 0.00 0.00 0.00 3.41
1550 1603 5.946377 AGTTGATCCCCTTTAAACATGACTC 59.054 40.000 0.00 0.00 0.00 3.36
1572 1625 3.304659 CCATCAAGGTGGAGTTTTTGTCG 60.305 47.826 0.00 0.00 42.02 4.35
1609 1665 8.305046 TCCCTTTTTGACTTATAATCCCATTG 57.695 34.615 0.00 0.00 0.00 2.82
1638 1694 5.008019 GCTTCCTTTCGAATTCATAGCATCA 59.992 40.000 6.22 0.00 0.00 3.07
1641 1697 6.290605 TCCTTTCGAATTCATAGCATCATGA 58.709 36.000 6.22 0.00 33.10 3.07
1642 1698 6.203530 TCCTTTCGAATTCATAGCATCATGAC 59.796 38.462 6.22 0.00 34.69 3.06
1643 1699 5.929697 TTCGAATTCATAGCATCATGACC 57.070 39.130 6.22 0.00 34.69 4.02
1644 1700 4.318332 TCGAATTCATAGCATCATGACCC 58.682 43.478 6.22 0.00 34.69 4.46
1656 1712 1.212688 TCATGACCCATGACCCATGAC 59.787 52.381 15.19 1.54 44.60 3.06
1706 1762 3.928375 CCAATTTAAGTGGAAGTGCATGC 59.072 43.478 11.82 11.82 38.54 4.06
1788 1844 4.406648 AAGAACTGTGTCACACTCATGA 57.593 40.909 9.90 0.00 35.11 3.07
1794 1850 3.599343 TGTGTCACACTCATGATTAGCC 58.401 45.455 9.90 0.00 35.11 3.93
1815 1871 4.039245 GCCATAGAATACACTAGCCTCACA 59.961 45.833 0.00 0.00 0.00 3.58
1832 1888 5.632347 GCCTCACATTTCTGATTTCTTTGTG 59.368 40.000 0.00 0.00 35.49 3.33
1834 1890 5.531634 TCACATTTCTGATTTCTTTGTGGC 58.468 37.500 0.00 0.00 35.05 5.01
1972 2223 3.517296 TGGTTTGTACCCATCACATGT 57.483 42.857 0.00 0.00 44.35 3.21
2263 2515 1.035139 CTTTTGGCAGCCAGTCAGTT 58.965 50.000 15.50 0.00 33.81 3.16
2328 2581 2.076100 CTCCACGCACTTTCATTGCTA 58.924 47.619 0.00 0.00 37.87 3.49
2370 2623 5.007430 CCATACATTTGTGAGAGCTGACATC 59.993 44.000 0.00 0.00 0.00 3.06
2464 2728 8.062536 AGAACTAACTCTATGGACCAGTAAGAT 58.937 37.037 0.00 0.00 0.00 2.40
2474 2738 7.931015 ATGGACCAGTAAGATTCTTATACCA 57.069 36.000 9.28 13.08 0.00 3.25
2540 2804 7.286316 GTCATCAGATTAGGATTTTGGGTGAAT 59.714 37.037 0.00 0.00 0.00 2.57
2551 2815 5.782893 TTTTGGGTGAATTAGTTGGAGTG 57.217 39.130 0.00 0.00 0.00 3.51
2567 2831 6.879458 AGTTGGAGTGTAAACCTCAATATGAC 59.121 38.462 0.00 0.00 0.00 3.06
2579 2843 6.045318 ACCTCAATATGACATCTTGAGTTCG 58.955 40.000 28.18 20.35 42.69 3.95
2737 3001 2.865119 AGATGGCATCACACTGTCAA 57.135 45.000 27.93 0.00 33.82 3.18
2822 3086 6.861055 CCTTTGATATGTGTGGTGTACAAAAC 59.139 38.462 0.00 0.00 41.89 2.43
2858 3122 4.264083 TGCTCCTGATCTTTCCTTTTCCAT 60.264 41.667 0.00 0.00 0.00 3.41
2892 3156 4.161377 TCCTTTTCTGTTTTTGGTCCTTGG 59.839 41.667 0.00 0.00 0.00 3.61
2987 3251 7.335422 AGCATAAGAAGTTGTGAGATTTGGTAG 59.665 37.037 0.00 0.00 0.00 3.18
3008 3272 0.320421 AAGTGTGCCGCGTATCTTGT 60.320 50.000 4.92 0.00 0.00 3.16
3009 3273 0.528924 AGTGTGCCGCGTATCTTGTA 59.471 50.000 4.92 0.00 0.00 2.41
3060 3324 4.851639 AAGCCTCTGATGAAACATAGGT 57.148 40.909 0.00 0.00 36.78 3.08
3120 3384 6.980593 TCGAATGTCTGTTTTGGATCATTTT 58.019 32.000 0.00 0.00 0.00 1.82
3257 3522 1.993369 GCTTGCTAATCACCGGTGGC 61.993 60.000 33.40 27.22 0.00 5.01
3273 3538 2.504175 GGTGGCTGGAAGATTGGTACTA 59.496 50.000 0.00 0.00 34.07 1.82
3279 3544 5.186198 GCTGGAAGATTGGTACTACACATT 58.814 41.667 0.00 0.00 34.07 2.71
3680 3946 7.079451 AGGTTGATGTACCTATTATTCCCAG 57.921 40.000 0.00 0.00 46.65 4.45
3684 3950 7.062749 TGATGTACCTATTATTCCCAGTGAC 57.937 40.000 0.00 0.00 0.00 3.67
3750 4016 7.040823 GGTCAGATCAGAAATGAAGAAAGTGTT 60.041 37.037 0.00 0.00 0.00 3.32
3855 4121 1.608283 CCCGTTCAAACTCCTCCTGTC 60.608 57.143 0.00 0.00 0.00 3.51
6441 6710 2.713708 AGGGATAGAAGGAAATGGAGCC 59.286 50.000 0.00 0.00 0.00 4.70
6528 6797 7.507733 AGATTATCGGTCAATACTTAGACGT 57.492 36.000 0.00 0.00 35.63 4.34
6536 6805 4.799428 GTCAATACTTAGACGTCTGAAGGC 59.201 45.833 28.12 8.36 0.00 4.35
6603 6872 1.928714 TTATTGCCCCGAACCCCCTC 61.929 60.000 0.00 0.00 0.00 4.30
6667 6943 5.067936 AGGTACAAACTGTGATCTAGATCCG 59.932 44.000 26.33 17.69 37.02 4.18
6668 6944 3.786635 ACAAACTGTGATCTAGATCCGC 58.213 45.455 26.33 19.67 37.02 5.54
6788 7066 7.671495 AATTGGACAAATAGAAATGTTTGCC 57.329 32.000 0.00 0.00 38.54 4.52
6790 7068 6.166984 TGGACAAATAGAAATGTTTGCCAA 57.833 33.333 9.75 0.00 37.93 4.52
6796 7074 9.723601 ACAAATAGAAATGTTTGCCAAATATGT 57.276 25.926 0.00 0.00 38.54 2.29
6830 7108 9.781633 TTGCATTTTGTCTTACCTACTTACTAA 57.218 29.630 0.00 0.00 0.00 2.24
6859 7137 4.942761 AAAGTCTGCCATGTCACAAATT 57.057 36.364 0.00 0.00 0.00 1.82
6861 7139 6.403866 AAAGTCTGCCATGTCACAAATTTA 57.596 33.333 0.00 0.00 0.00 1.40
6882 7160 9.929180 AATTTAAATGTTAGCTCTTTTTCTCCC 57.071 29.630 0.39 0.00 0.00 4.30
7004 7282 3.596214 TGAGGGTGAAACGATTAGCTTC 58.404 45.455 0.00 0.00 38.12 3.86
7477 7774 1.805945 CGAGTACGTCTGCAAGCCC 60.806 63.158 0.00 0.00 34.56 5.19
7602 7902 1.989966 GAAGCATCCGAGGACGACGA 61.990 60.000 0.00 0.00 42.66 4.20
7669 7969 1.153289 GGTGATGCTGATCTGCGGT 60.153 57.895 18.32 10.45 35.36 5.68
7795 8095 2.270959 GCCCAAGGCCAAGAAGAAG 58.729 57.895 5.01 0.00 44.06 2.85
7864 8164 1.205893 AGGTGATTCTGGTTCTCTCGC 59.794 52.381 0.00 0.00 0.00 5.03
7917 8217 9.302345 CGAACACAGACAGAATAAATAGTGTAT 57.698 33.333 0.00 0.00 37.93 2.29
8012 8313 2.165998 GCTCTTTTTCCATCCACAGCT 58.834 47.619 0.00 0.00 0.00 4.24
8028 8329 2.099756 ACAGCTGTTTTCACTTGGCTTC 59.900 45.455 15.25 0.00 0.00 3.86
8077 8379 2.489938 TGCTGTAAAGCCTTCCGAAT 57.510 45.000 1.45 0.00 0.00 3.34
8079 8381 2.027192 TGCTGTAAAGCCTTCCGAATCT 60.027 45.455 1.45 0.00 0.00 2.40
8082 8384 3.793559 TGTAAAGCCTTCCGAATCTAGC 58.206 45.455 0.00 0.00 0.00 3.42
8088 8390 2.678190 GCCTTCCGAATCTAGCAGTGTT 60.678 50.000 0.00 0.00 0.00 3.32
8154 8459 4.344104 TCCATTCAATTTCCCTCTGTTCC 58.656 43.478 0.00 0.00 0.00 3.62
8157 8462 3.439857 TCAATTTCCCTCTGTTCCCAG 57.560 47.619 0.00 0.00 40.25 4.45
8163 8474 6.694445 ATTTCCCTCTGTTCCCAGATATAG 57.306 41.667 0.00 0.00 46.38 1.31
8170 8481 6.043706 CCTCTGTTCCCAGATATAGGATGTTT 59.956 42.308 0.00 0.00 46.38 2.83
8268 8582 9.883142 TCCAATTCACAAAATTTAGAACAACTT 57.117 25.926 0.00 0.00 0.00 2.66
8269 8583 9.919348 CCAATTCACAAAATTTAGAACAACTTG 57.081 29.630 0.00 0.00 0.00 3.16
8324 8638 2.093447 GGGACATGACACTACAGGGAAG 60.093 54.545 0.00 0.00 0.00 3.46
8326 8640 3.368531 GGACATGACACTACAGGGAAGAC 60.369 52.174 0.00 0.00 0.00 3.01
8356 8691 2.492881 GGTGATGTCCATGAATGCACAA 59.507 45.455 0.00 0.00 0.00 3.33
8357 8692 3.428452 GGTGATGTCCATGAATGCACAAG 60.428 47.826 0.00 0.00 0.00 3.16
8367 8702 3.295093 TGAATGCACAAGGAGGTTTCAA 58.705 40.909 0.00 0.00 0.00 2.69
8380 8715 3.365472 AGGTTTCAAAGTGGAAGTTGCT 58.635 40.909 0.00 0.00 0.00 3.91
8386 8721 2.262423 AAGTGGAAGTTGCTGTCCTC 57.738 50.000 0.00 0.00 34.77 3.71
8406 8741 2.038557 TCCTCCTACCTTGCTTCACAAC 59.961 50.000 0.00 0.00 33.68 3.32
8412 8747 1.576421 CTTGCTTCACAACCGGAGC 59.424 57.895 9.46 5.93 33.68 4.70
8442 8777 2.097036 TGCTATCTTCCGAACGAAGGA 58.903 47.619 0.00 0.00 46.93 3.36
8443 8778 2.099263 TGCTATCTTCCGAACGAAGGAG 59.901 50.000 0.00 0.33 46.93 3.69
8444 8779 2.544069 GCTATCTTCCGAACGAAGGAGG 60.544 54.545 0.00 0.00 46.93 4.30
8445 8780 1.558233 ATCTTCCGAACGAAGGAGGT 58.442 50.000 0.00 0.00 46.93 3.85
8446 8781 1.335145 TCTTCCGAACGAAGGAGGTT 58.665 50.000 0.00 0.00 46.93 3.50
8447 8782 1.000506 TCTTCCGAACGAAGGAGGTTG 59.999 52.381 0.00 0.00 46.93 3.77
8448 8783 0.034337 TTCCGAACGAAGGAGGTTGG 59.966 55.000 0.00 0.00 39.22 3.77
8449 8784 1.117142 TCCGAACGAAGGAGGTTGGT 61.117 55.000 0.00 0.00 33.19 3.67
8450 8785 0.250166 CCGAACGAAGGAGGTTGGTT 60.250 55.000 0.00 0.00 39.57 3.67
8451 8786 1.589803 CGAACGAAGGAGGTTGGTTT 58.410 50.000 0.00 0.00 37.22 3.27
8497 8832 5.339008 TCCTGACTCTTATATTTGTGCGT 57.661 39.130 0.00 0.00 0.00 5.24
8511 8846 3.052455 TGTGCGTCTGGTGATACAAAT 57.948 42.857 0.00 0.00 0.00 2.32
8518 8853 4.000988 GTCTGGTGATACAAATGAACGGT 58.999 43.478 0.00 0.00 0.00 4.83
8545 8880 3.432890 GGCCATTTAAGGGAGAGTGAGAG 60.433 52.174 0.00 0.00 0.00 3.20
8567 8902 0.521735 GCAAGGATGTCACCGAAACC 59.478 55.000 0.00 0.00 34.73 3.27
8579 8914 2.806244 CACCGAAACCGAGAAAGTTGAT 59.194 45.455 0.00 0.00 0.00 2.57
8584 8919 5.162075 CGAAACCGAGAAAGTTGATACTCT 58.838 41.667 0.00 0.00 31.99 3.24
8589 8924 4.399618 CCGAGAAAGTTGATACTCTCTCCA 59.600 45.833 3.72 0.00 42.90 3.86
8593 8928 7.221838 CGAGAAAGTTGATACTCTCTCCAATTC 59.778 40.741 3.72 0.00 42.90 2.17
8598 8933 9.829507 AAGTTGATACTCTCTCCAATTCATAAG 57.170 33.333 0.00 0.00 31.99 1.73
8599 8934 8.986991 AGTTGATACTCTCTCCAATTCATAAGT 58.013 33.333 0.00 0.00 0.00 2.24
8600 8935 9.039870 GTTGATACTCTCTCCAATTCATAAGTG 57.960 37.037 0.00 0.00 0.00 3.16
8601 8936 8.311395 TGATACTCTCTCCAATTCATAAGTGT 57.689 34.615 0.00 0.00 0.00 3.55
8602 8937 8.417106 TGATACTCTCTCCAATTCATAAGTGTC 58.583 37.037 0.00 0.00 0.00 3.67
8607 8942 3.517602 TCCAATTCATAAGTGTCGTCGG 58.482 45.455 0.00 0.00 0.00 4.79
8611 8978 5.349270 CCAATTCATAAGTGTCGTCGGTTTA 59.651 40.000 0.00 0.00 0.00 2.01
8612 8979 6.455113 CCAATTCATAAGTGTCGTCGGTTTAG 60.455 42.308 0.00 0.00 0.00 1.85
8622 8989 4.083643 TGTCGTCGGTTTAGACAAGAGTAG 60.084 45.833 0.00 0.00 41.30 2.57
8623 8990 4.067896 TCGTCGGTTTAGACAAGAGTAGT 58.932 43.478 0.00 0.00 40.98 2.73
8624 8991 4.516698 TCGTCGGTTTAGACAAGAGTAGTT 59.483 41.667 0.00 0.00 40.98 2.24
8625 8992 5.700832 TCGTCGGTTTAGACAAGAGTAGTTA 59.299 40.000 0.00 0.00 40.98 2.24
8629 8996 7.960195 GTCGGTTTAGACAAGAGTAGTTAGTAC 59.040 40.741 0.00 0.00 40.65 2.73
8643 9010 1.315257 TAGTACCGGGCCTTGTCGTC 61.315 60.000 6.32 0.00 0.00 4.20
8659 9026 1.515519 GTCGTCTGCGGCGTCATTA 60.516 57.895 9.37 0.00 38.89 1.90
8670 9037 1.029408 GCGTCATTACCATGGTGCCA 61.029 55.000 28.17 11.59 0.00 4.92
8671 9038 0.732571 CGTCATTACCATGGTGCCAC 59.267 55.000 28.17 16.18 0.00 5.01
8695 9062 1.712977 GGAGCTTCGGCAATGCTGAG 61.713 60.000 16.86 12.04 45.12 3.35
8697 9064 1.023513 AGCTTCGGCAATGCTGAGAC 61.024 55.000 16.86 12.76 45.12 3.36
8727 9094 3.356814 GCCCTAGGCTGGAACAAAA 57.643 52.632 2.05 0.00 46.69 2.44
8728 9095 1.627864 GCCCTAGGCTGGAACAAAAA 58.372 50.000 2.05 0.00 46.69 1.94
8783 9784 2.799412 CTCTGACTCAGTTGTTGTGAGC 59.201 50.000 5.94 0.00 44.60 4.26
8792 9793 2.103094 AGTTGTTGTGAGCAGTAGCAGA 59.897 45.455 0.00 0.00 45.49 4.26
8794 9795 1.074752 GTTGTGAGCAGTAGCAGAGC 58.925 55.000 0.00 0.00 45.49 4.09
8795 9796 0.972134 TTGTGAGCAGTAGCAGAGCT 59.028 50.000 0.00 0.00 45.49 4.09
8796 9797 1.839424 TGTGAGCAGTAGCAGAGCTA 58.161 50.000 0.00 0.00 45.49 3.32
8802 9803 1.472376 GCAGTAGCAGAGCTAAGGGTG 60.472 57.143 0.00 0.00 43.07 4.61
8803 9804 1.137872 CAGTAGCAGAGCTAAGGGTGG 59.862 57.143 0.00 0.00 43.07 4.61
8808 9814 2.091055 AGCAGAGCTAAGGGTGGATAGA 60.091 50.000 0.00 0.00 36.99 1.98
8809 9815 2.903135 GCAGAGCTAAGGGTGGATAGAT 59.097 50.000 0.00 0.00 0.00 1.98
8810 9816 3.056179 GCAGAGCTAAGGGTGGATAGATC 60.056 52.174 0.00 0.00 35.36 2.75
8816 9822 8.347591 AGAGCTAAGGGTGGATAGATCATATAA 58.652 37.037 0.00 0.00 37.09 0.98
8817 9823 9.153479 GAGCTAAGGGTGGATAGATCATATAAT 57.847 37.037 0.00 0.00 35.26 1.28
8821 9827 8.860517 AAGGGTGGATAGATCATATAATAGCA 57.139 34.615 0.00 0.00 0.00 3.49
8822 9828 8.860517 AGGGTGGATAGATCATATAATAGCAA 57.139 34.615 0.00 0.00 0.00 3.91
8906 9912 4.819105 AATCCATGAACTAGTTCCACGA 57.181 40.909 28.43 20.74 38.77 4.35
8957 9964 1.299976 CCACTGGTTGGGAGGTAGC 59.700 63.158 0.00 0.00 42.54 3.58
8959 9966 2.291043 ACTGGTTGGGAGGTAGCGG 61.291 63.158 0.00 0.00 0.00 5.52
8972 9979 3.821600 GAGGTAGCGGATCAGATCTTACA 59.178 47.826 10.36 0.00 0.00 2.41
8973 9980 3.823873 AGGTAGCGGATCAGATCTTACAG 59.176 47.826 10.36 0.00 0.00 2.74
8979 9986 4.407818 CGGATCAGATCTTACAGATACGC 58.592 47.826 11.25 0.00 37.91 4.42
8982 9989 5.163703 GGATCAGATCTTACAGATACGCGAT 60.164 44.000 15.93 0.96 34.53 4.58
8985 9992 7.198306 TCAGATCTTACAGATACGCGATAAA 57.802 36.000 15.93 0.00 34.53 1.40
8993 10000 5.593968 ACAGATACGCGATAAACCACATTA 58.406 37.500 15.93 0.00 0.00 1.90
8998 10005 3.061161 ACGCGATAAACCACATTAACGAC 59.939 43.478 15.93 0.00 34.24 4.34
9006 10013 6.399204 AAACCACATTAACGACGATTCTAC 57.601 37.500 0.00 0.00 0.00 2.59
9010 10017 5.684626 CCACATTAACGACGATTCTACTACC 59.315 44.000 0.00 0.00 0.00 3.18
9018 10025 5.587844 ACGACGATTCTACTACCTGTAACAT 59.412 40.000 0.00 0.00 0.00 2.71
9032 10039 3.758023 CTGTAACATGCCATTTGTGAGGA 59.242 43.478 0.00 0.00 0.00 3.71
9033 10040 4.148079 TGTAACATGCCATTTGTGAGGAA 58.852 39.130 0.00 0.00 0.00 3.36
9057 10064 1.742761 AAGTTGATGTCCTGCGATGG 58.257 50.000 0.00 0.00 0.00 3.51
9067 10074 4.147449 TGCGATGGTGCCTCCTCG 62.147 66.667 0.00 10.20 38.71 4.63
9101 10109 1.854939 TGGATCTGCATCATTCCCCTT 59.145 47.619 0.00 0.00 0.00 3.95
9103 10111 3.181440 TGGATCTGCATCATTCCCCTTAC 60.181 47.826 0.00 0.00 0.00 2.34
9110 10118 1.140161 CATTCCCCTTACGCGTCGA 59.860 57.895 18.63 4.78 0.00 4.20
9111 10119 1.140375 ATTCCCCTTACGCGTCGAC 59.860 57.895 18.63 5.18 0.00 4.20
9114 10122 3.803082 CCCTTACGCGTCGACGGA 61.803 66.667 36.13 8.34 40.23 4.69
9118 10126 0.564767 CTTACGCGTCGACGGATTTC 59.435 55.000 36.13 19.63 40.23 2.17
9119 10127 0.109827 TTACGCGTCGACGGATTTCA 60.110 50.000 36.13 4.40 40.23 2.69
9129 10137 1.265905 GACGGATTTCAAGTGGCGTTT 59.734 47.619 0.00 0.00 0.00 3.60
9138 10146 2.685388 TCAAGTGGCGTTTGATGACAAA 59.315 40.909 0.01 0.00 42.66 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 9.120538 ACATCTAGCTTTTGTTCTAAGTCAAAA 57.879 29.630 0.00 0.00 39.93 2.44
77 78 8.677148 ACATCTAGCTTTTGTTCTAAGTCAAA 57.323 30.769 0.00 0.00 32.75 2.69
78 79 9.204570 GTACATCTAGCTTTTGTTCTAAGTCAA 57.795 33.333 0.00 0.00 0.00 3.18
79 80 8.364894 TGTACATCTAGCTTTTGTTCTAAGTCA 58.635 33.333 0.00 0.00 0.00 3.41
80 81 8.648968 GTGTACATCTAGCTTTTGTTCTAAGTC 58.351 37.037 0.00 0.00 0.00 3.01
81 82 8.368668 AGTGTACATCTAGCTTTTGTTCTAAGT 58.631 33.333 0.00 0.00 0.00 2.24
82 83 8.764524 AGTGTACATCTAGCTTTTGTTCTAAG 57.235 34.615 0.00 0.00 0.00 2.18
85 86 9.726438 AATAAGTGTACATCTAGCTTTTGTTCT 57.274 29.630 0.00 0.00 0.00 3.01
86 87 9.974750 GAATAAGTGTACATCTAGCTTTTGTTC 57.025 33.333 0.00 0.63 0.00 3.18
87 88 8.656849 CGAATAAGTGTACATCTAGCTTTTGTT 58.343 33.333 0.00 0.00 0.00 2.83
88 89 7.201530 GCGAATAAGTGTACATCTAGCTTTTGT 60.202 37.037 0.00 0.00 0.00 2.83
89 90 7.119997 GCGAATAAGTGTACATCTAGCTTTTG 58.880 38.462 0.00 0.00 0.00 2.44
90 91 6.019801 CGCGAATAAGTGTACATCTAGCTTTT 60.020 38.462 0.00 0.00 0.00 2.27
91 92 5.459107 CGCGAATAAGTGTACATCTAGCTTT 59.541 40.000 0.00 0.00 0.00 3.51
92 93 4.976731 CGCGAATAAGTGTACATCTAGCTT 59.023 41.667 0.00 0.00 0.00 3.74
93 94 4.537965 CGCGAATAAGTGTACATCTAGCT 58.462 43.478 0.00 0.00 0.00 3.32
94 95 3.669122 CCGCGAATAAGTGTACATCTAGC 59.331 47.826 8.23 0.00 0.00 3.42
95 96 4.910456 GTCCGCGAATAAGTGTACATCTAG 59.090 45.833 8.23 0.00 0.00 2.43
96 97 4.553351 CGTCCGCGAATAAGTGTACATCTA 60.553 45.833 8.23 0.00 41.33 1.98
97 98 3.703420 GTCCGCGAATAAGTGTACATCT 58.297 45.455 8.23 0.00 0.00 2.90
98 99 2.466571 CGTCCGCGAATAAGTGTACATC 59.533 50.000 8.23 0.00 41.33 3.06
99 100 2.456989 CGTCCGCGAATAAGTGTACAT 58.543 47.619 8.23 0.00 41.33 2.29
100 101 1.467883 CCGTCCGCGAATAAGTGTACA 60.468 52.381 8.23 0.00 41.33 2.90
101 102 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
102 103 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
103 104 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
104 105 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
105 106 1.033746 TCCTCCGTCCGCGAATAAGT 61.034 55.000 8.23 0.00 41.33 2.24
106 107 0.101759 TTCCTCCGTCCGCGAATAAG 59.898 55.000 8.23 0.00 41.33 1.73
107 108 0.101759 CTTCCTCCGTCCGCGAATAA 59.898 55.000 8.23 0.00 41.33 1.40
108 109 1.033746 ACTTCCTCCGTCCGCGAATA 61.034 55.000 8.23 0.00 41.33 1.75
109 110 1.033746 TACTTCCTCCGTCCGCGAAT 61.034 55.000 8.23 0.00 41.33 3.34
110 111 1.033746 ATACTTCCTCCGTCCGCGAA 61.034 55.000 8.23 0.00 41.33 4.70
111 112 1.452651 ATACTTCCTCCGTCCGCGA 60.453 57.895 8.23 0.00 41.33 5.87
112 113 1.299165 CATACTTCCTCCGTCCGCG 60.299 63.158 0.00 0.00 37.95 6.46
113 114 1.591863 GCATACTTCCTCCGTCCGC 60.592 63.158 0.00 0.00 0.00 5.54
114 115 0.389391 ATGCATACTTCCTCCGTCCG 59.611 55.000 0.00 0.00 0.00 4.79
115 116 1.139058 ACATGCATACTTCCTCCGTCC 59.861 52.381 0.00 0.00 0.00 4.79
116 117 2.604046 ACATGCATACTTCCTCCGTC 57.396 50.000 0.00 0.00 0.00 4.79
117 118 3.451178 AGTAACATGCATACTTCCTCCGT 59.549 43.478 0.00 0.00 29.38 4.69
118 119 4.060038 AGTAACATGCATACTTCCTCCG 57.940 45.455 0.00 0.00 29.38 4.63
129 130 9.991906 GGGAGTAACTTATAATAGTAACATGCA 57.008 33.333 0.00 0.00 0.00 3.96
130 131 9.433153 GGGGAGTAACTTATAATAGTAACATGC 57.567 37.037 0.00 0.00 0.00 4.06
133 134 8.927411 GGTGGGGAGTAACTTATAATAGTAACA 58.073 37.037 0.00 0.00 0.00 2.41
134 135 8.084684 CGGTGGGGAGTAACTTATAATAGTAAC 58.915 40.741 0.00 0.00 0.00 2.50
135 136 7.784550 ACGGTGGGGAGTAACTTATAATAGTAA 59.215 37.037 0.00 0.00 0.00 2.24
136 137 7.231317 CACGGTGGGGAGTAACTTATAATAGTA 59.769 40.741 0.00 0.00 0.00 1.82
137 138 6.041296 CACGGTGGGGAGTAACTTATAATAGT 59.959 42.308 0.00 0.00 0.00 2.12
138 139 6.266103 TCACGGTGGGGAGTAACTTATAATAG 59.734 42.308 8.50 0.00 0.00 1.73
139 140 6.040842 GTCACGGTGGGGAGTAACTTATAATA 59.959 42.308 8.50 0.00 0.00 0.98
140 141 4.964262 TCACGGTGGGGAGTAACTTATAAT 59.036 41.667 8.50 0.00 0.00 1.28
141 142 4.160252 GTCACGGTGGGGAGTAACTTATAA 59.840 45.833 8.50 0.00 0.00 0.98
142 143 3.701040 GTCACGGTGGGGAGTAACTTATA 59.299 47.826 8.50 0.00 0.00 0.98
143 144 2.498885 GTCACGGTGGGGAGTAACTTAT 59.501 50.000 8.50 0.00 0.00 1.73
144 145 1.895131 GTCACGGTGGGGAGTAACTTA 59.105 52.381 8.50 0.00 0.00 2.24
145 146 0.683412 GTCACGGTGGGGAGTAACTT 59.317 55.000 8.50 0.00 0.00 2.66
146 147 0.178941 AGTCACGGTGGGGAGTAACT 60.179 55.000 8.50 0.00 0.00 2.24
147 148 1.475682 CTAGTCACGGTGGGGAGTAAC 59.524 57.143 8.50 0.00 0.00 2.50
148 149 1.076024 ACTAGTCACGGTGGGGAGTAA 59.924 52.381 8.50 0.00 0.00 2.24
149 150 0.700564 ACTAGTCACGGTGGGGAGTA 59.299 55.000 8.50 0.00 0.00 2.59
150 151 0.611340 GACTAGTCACGGTGGGGAGT 60.611 60.000 18.20 8.63 0.00 3.85
151 152 0.323542 AGACTAGTCACGGTGGGGAG 60.324 60.000 24.44 5.54 0.00 4.30
152 153 0.994247 TAGACTAGTCACGGTGGGGA 59.006 55.000 24.44 0.00 0.00 4.81
153 154 1.749634 CTTAGACTAGTCACGGTGGGG 59.250 57.143 24.44 2.62 0.00 4.96
154 155 1.134560 GCTTAGACTAGTCACGGTGGG 59.865 57.143 24.44 8.27 0.00 4.61
155 156 1.816835 TGCTTAGACTAGTCACGGTGG 59.183 52.381 24.44 9.22 0.00 4.61
156 157 3.570926 TTGCTTAGACTAGTCACGGTG 57.429 47.619 24.44 0.56 0.00 4.94
157 158 3.614390 GCTTTGCTTAGACTAGTCACGGT 60.614 47.826 24.44 6.62 0.00 4.83
158 159 2.924290 GCTTTGCTTAGACTAGTCACGG 59.076 50.000 24.44 13.70 0.00 4.94
159 160 2.924290 GGCTTTGCTTAGACTAGTCACG 59.076 50.000 24.44 12.67 0.00 4.35
160 161 3.263261 GGGCTTTGCTTAGACTAGTCAC 58.737 50.000 24.44 11.23 0.00 3.67
161 162 2.094182 CGGGCTTTGCTTAGACTAGTCA 60.094 50.000 24.44 8.16 0.00 3.41
162 163 2.541556 CGGGCTTTGCTTAGACTAGTC 58.458 52.381 15.41 15.41 0.00 2.59
163 164 1.207329 CCGGGCTTTGCTTAGACTAGT 59.793 52.381 0.00 0.00 0.00 2.57
164 165 1.207329 ACCGGGCTTTGCTTAGACTAG 59.793 52.381 6.32 0.00 0.00 2.57
165 166 1.272807 ACCGGGCTTTGCTTAGACTA 58.727 50.000 6.32 0.00 0.00 2.59
166 167 0.400594 AACCGGGCTTTGCTTAGACT 59.599 50.000 6.32 0.00 0.00 3.24
167 168 1.244816 AAACCGGGCTTTGCTTAGAC 58.755 50.000 6.32 0.00 0.00 2.59
168 169 2.863132 TAAACCGGGCTTTGCTTAGA 57.137 45.000 6.32 0.00 0.00 2.10
169 170 4.450082 AAATAAACCGGGCTTTGCTTAG 57.550 40.909 6.32 0.00 0.00 2.18
170 171 4.158209 GGTAAATAAACCGGGCTTTGCTTA 59.842 41.667 6.32 0.00 0.00 3.09
171 172 3.056393 GGTAAATAAACCGGGCTTTGCTT 60.056 43.478 6.32 0.00 0.00 3.91
172 173 2.494471 GGTAAATAAACCGGGCTTTGCT 59.506 45.455 6.32 0.00 0.00 3.91
173 174 2.883574 GGTAAATAAACCGGGCTTTGC 58.116 47.619 6.32 3.25 0.00 3.68
182 183 2.098607 GGCTCCAAGCGGTAAATAAACC 59.901 50.000 0.00 0.00 43.62 3.27
183 184 2.750712 TGGCTCCAAGCGGTAAATAAAC 59.249 45.455 0.00 0.00 43.62 2.01
184 185 2.750712 GTGGCTCCAAGCGGTAAATAAA 59.249 45.455 0.00 0.00 43.62 1.40
185 186 2.361789 GTGGCTCCAAGCGGTAAATAA 58.638 47.619 0.00 0.00 43.62 1.40
186 187 1.741055 CGTGGCTCCAAGCGGTAAATA 60.741 52.381 0.00 0.00 43.62 1.40
187 188 1.024579 CGTGGCTCCAAGCGGTAAAT 61.025 55.000 0.00 0.00 43.62 1.40
188 189 1.669760 CGTGGCTCCAAGCGGTAAA 60.670 57.895 0.00 0.00 43.62 2.01
189 190 2.047655 CGTGGCTCCAAGCGGTAA 60.048 61.111 0.00 0.00 43.62 2.85
190 191 3.307906 ACGTGGCTCCAAGCGGTA 61.308 61.111 1.75 0.00 43.62 4.02
191 192 4.988598 CACGTGGCTCCAAGCGGT 62.989 66.667 7.95 0.00 43.62 5.68
281 295 1.715785 CTTTGGGAGGGAAAAGGCAA 58.284 50.000 0.00 0.00 31.15 4.52
300 314 1.188871 TGGGGATTTTGGTTTCGGGC 61.189 55.000 0.00 0.00 0.00 6.13
331 345 0.623723 CGGGGAAGATTTGGAAGGGA 59.376 55.000 0.00 0.00 0.00 4.20
908 934 0.981277 GAAATGGGAGACGGAGGGGA 60.981 60.000 0.00 0.00 0.00 4.81
1097 1134 0.875059 GAAACAAGAAGCGTGGGAGG 59.125 55.000 0.00 0.00 0.00 4.30
1103 1140 0.232303 CGCGAAGAAACAAGAAGCGT 59.768 50.000 0.00 0.00 41.04 5.07
1122 1159 0.332972 AGATCCCCAAGAAAGCCACC 59.667 55.000 0.00 0.00 0.00 4.61
1207 1245 3.482783 GCTCGCTGACGACCTTGC 61.483 66.667 0.00 0.00 45.12 4.01
1268 1306 0.107831 CAAGGAAACGGACCCTGTCA 59.892 55.000 0.00 0.00 33.68 3.58
1300 1338 1.148273 GTGACAGAGGTGTGGCCAA 59.852 57.895 7.24 0.00 36.88 4.52
1384 1429 1.656652 CTGCCTGGTATTCCGTTCAG 58.343 55.000 0.00 0.00 36.30 3.02
1479 1532 5.780282 TCAGAGTTTTTGACTAGGGAGATCA 59.220 40.000 0.00 0.00 39.19 2.92
1480 1533 6.287589 TCAGAGTTTTTGACTAGGGAGATC 57.712 41.667 0.00 0.00 39.19 2.75
1533 1586 4.599041 TGATGGAGTCATGTTTAAAGGGG 58.401 43.478 0.00 0.00 32.98 4.79
1549 1602 3.888930 GACAAAAACTCCACCTTGATGGA 59.111 43.478 0.00 0.00 46.92 3.41
1550 1603 3.304659 CGACAAAAACTCCACCTTGATGG 60.305 47.826 0.00 0.00 41.57 3.51
1572 1625 2.793278 AAAAGGGAACAACACGATGC 57.207 45.000 0.00 0.00 0.00 3.91
1609 1665 6.074034 GCTATGAATTCGAAAGGAAGCTCTAC 60.074 42.308 0.00 0.00 38.24 2.59
1638 1694 0.552848 GGTCATGGGTCATGGGTCAT 59.447 55.000 7.88 0.00 41.66 3.06
1641 1697 0.846427 ACAGGTCATGGGTCATGGGT 60.846 55.000 7.88 0.57 41.66 4.51
1642 1698 1.212375 TACAGGTCATGGGTCATGGG 58.788 55.000 7.88 0.06 41.66 4.00
1643 1699 2.421952 CCTTACAGGTCATGGGTCATGG 60.422 54.545 7.88 0.00 41.66 3.66
1644 1700 2.923121 CCTTACAGGTCATGGGTCATG 58.077 52.381 1.76 1.76 42.60 3.07
1656 1712 7.099266 TGCAATGATGAAAATACCTTACAGG 57.901 36.000 0.00 0.00 42.49 4.00
1706 1762 2.355797 GCATGTGCGCTCAATGTTG 58.644 52.632 16.95 11.02 0.00 3.33
1788 1844 6.726299 TGAGGCTAGTGTATTCTATGGCTAAT 59.274 38.462 0.00 0.00 30.75 1.73
1794 1850 8.147058 AGAAATGTGAGGCTAGTGTATTCTATG 58.853 37.037 0.00 0.00 0.00 2.23
1815 1871 6.761312 TGAATGCCACAAAGAAATCAGAAAT 58.239 32.000 0.00 0.00 0.00 2.17
1832 1888 2.485814 GTCACTCAACTCCTTGAATGCC 59.514 50.000 0.00 0.00 34.28 4.40
1834 1890 3.188048 GCAGTCACTCAACTCCTTGAATG 59.812 47.826 0.00 0.00 35.37 2.67
1902 2153 7.848223 AAAGAAAAGCAATTGGGTTATATGC 57.152 32.000 7.72 0.00 35.85 3.14
1972 2223 8.712228 ATCCTCAAGACTACATATATGACACA 57.288 34.615 19.63 1.06 0.00 3.72
2132 2384 9.558396 ACCATTTTCTGCATTTAGAATGAAAAA 57.442 25.926 9.41 7.72 37.10 1.94
2249 2501 0.253044 TATGGAACTGACTGGCTGCC 59.747 55.000 12.87 12.87 0.00 4.85
2328 2581 8.635765 ATGTATGGTCACTACTGAAAAACAAT 57.364 30.769 0.00 0.00 0.00 2.71
2397 2653 4.963276 TCATATCCAAAACAAAGAGCCG 57.037 40.909 0.00 0.00 0.00 5.52
2474 2738 6.723298 TGTGACACCAAGATACCAATTTTT 57.277 33.333 2.45 0.00 0.00 1.94
2540 2804 8.598916 TCATATTGAGGTTTACACTCCAACTAA 58.401 33.333 0.00 0.00 34.06 2.24
2567 2831 4.992688 AGCTAAGTCTCGAACTCAAGATG 58.007 43.478 0.00 0.00 37.17 2.90
2618 2882 1.804748 GCCTAAAACGTGAACCAGAGG 59.195 52.381 0.00 0.00 0.00 3.69
2666 2930 8.368126 CAAATGACATCAAAAATTCTTACTCGC 58.632 33.333 0.00 0.00 0.00 5.03
2667 2931 8.853345 CCAAATGACATCAAAAATTCTTACTCG 58.147 33.333 0.00 0.00 0.00 4.18
2822 3086 2.643272 GAGCATGCGGGCATCATG 59.357 61.111 13.01 12.14 43.02 3.07
2858 3122 8.563732 CAAAAACAGAAAAGGAAGAAACCAAAA 58.436 29.630 0.00 0.00 0.00 2.44
2892 3156 4.095782 TCACAAACCAGCAGTTCAAACTAC 59.904 41.667 0.00 0.00 37.88 2.73
2987 3251 1.076332 AAGATACGCGGCACACTTTC 58.924 50.000 12.47 0.00 0.00 2.62
3257 3522 6.480320 GCTAATGTGTAGTACCAATCTTCCAG 59.520 42.308 0.00 0.00 0.00 3.86
3680 3946 5.104374 CCACAGCCATATTTTGATTGTCAC 58.896 41.667 0.00 0.00 0.00 3.67
3684 3950 7.013559 TGTCTATCCACAGCCATATTTTGATTG 59.986 37.037 0.00 0.00 0.00 2.67
3750 4016 5.814705 TGCGATATCATGTGTATTGTTGACA 59.185 36.000 3.12 0.00 0.00 3.58
3855 4121 4.141756 ACTTCCTCTCTATTGCCACTGATG 60.142 45.833 0.00 0.00 0.00 3.07
6441 6710 2.420022 GTCCAATGTGATCAAGGTTCCG 59.580 50.000 0.00 0.00 0.00 4.30
6528 6797 0.179059 TGCAAACTCGTGCCTTCAGA 60.179 50.000 0.00 0.00 44.26 3.27
6536 6805 1.197721 GTGAATCCCTGCAAACTCGTG 59.802 52.381 0.00 0.00 0.00 4.35
6667 6943 8.244113 ACTATACTGCAAAATTTAAGTTCCTGC 58.756 33.333 9.50 9.50 0.00 4.85
6710 6986 5.228945 TGATGAGGGGCTATAAACTAAGC 57.771 43.478 0.00 0.00 38.03 3.09
6779 7057 6.072175 AGTCACGTACATATTTGGCAAACATT 60.072 34.615 16.00 1.97 0.00 2.71
6788 7066 7.325821 ACAAAATGCAAGTCACGTACATATTTG 59.674 33.333 0.00 8.57 31.99 2.32
6790 7068 6.908825 ACAAAATGCAAGTCACGTACATATT 58.091 32.000 0.00 0.00 0.00 1.28
6796 7074 5.049954 GGTAAGACAAAATGCAAGTCACGTA 60.050 40.000 12.45 2.33 34.80 3.57
6830 7108 3.944015 GACATGGCAGACTTTAGCAAGAT 59.056 43.478 0.00 0.00 33.72 2.40
6859 7137 6.938030 TCGGGAGAAAAAGAGCTAACATTTAA 59.062 34.615 0.00 0.00 34.75 1.52
6861 7139 5.313712 TCGGGAGAAAAAGAGCTAACATTT 58.686 37.500 0.00 0.00 34.75 2.32
7004 7282 1.379642 GCCATTTCCTGGGAGCTTCG 61.380 60.000 0.00 0.00 46.06 3.79
7439 7736 2.887568 CAGATGGTCGGCGCTGAC 60.888 66.667 36.05 36.05 38.17 3.51
7451 7748 1.532090 GCAGACGTACTCGACCAGATG 60.532 57.143 0.00 0.00 40.62 2.90
7477 7774 3.782443 GTGTCCAGGGGGTAGCCG 61.782 72.222 4.56 0.00 34.93 5.52
7602 7902 1.244697 ACAGCTCAGGTCATCGTCGT 61.245 55.000 0.00 0.00 0.00 4.34
7698 7998 2.512286 AGTCGATGTGCATGCCGG 60.512 61.111 16.68 0.00 0.00 6.13
7744 8044 2.645567 CACAGCCAGTCGTCGTCT 59.354 61.111 0.00 0.00 0.00 4.18
7813 8113 2.545532 GGATGATCCTCTCGACTTGCTG 60.546 54.545 3.71 0.00 32.53 4.41
7882 8182 6.912203 TTCTGTCTGTGTTCGATAAAACAA 57.088 33.333 0.00 0.00 40.62 2.83
7917 8217 9.811995 CTTATATTACACTGGTGCTAACTGTAA 57.188 33.333 0.17 0.00 32.33 2.41
7918 8218 7.924412 GCTTATATTACACTGGTGCTAACTGTA 59.076 37.037 0.17 0.00 0.00 2.74
8012 8313 3.953612 ACTGATGAAGCCAAGTGAAAACA 59.046 39.130 0.00 0.00 0.00 2.83
8028 8329 3.853475 TCACTATCACTGCACACTGATG 58.147 45.455 6.93 1.86 0.00 3.07
8067 8369 1.134670 ACACTGCTAGATTCGGAAGGC 60.135 52.381 0.00 0.00 0.00 4.35
8082 8384 4.778534 ATGGAAGATGCAGAAAACACTG 57.221 40.909 0.00 0.00 40.43 3.66
8088 8390 6.761312 ACAAATGAAATGGAAGATGCAGAAA 58.239 32.000 0.00 0.00 0.00 2.52
8128 8433 4.768968 ACAGAGGGAAATTGAATGGAAGTG 59.231 41.667 0.00 0.00 0.00 3.16
8195 8506 5.931146 TGTGTTTATTCACCCATTTCAATGC 59.069 36.000 0.00 0.00 37.51 3.56
8242 8556 9.883142 AAGTTGTTCTAAATTTTGTGAATTGGA 57.117 25.926 0.00 0.00 0.00 3.53
8243 8557 9.919348 CAAGTTGTTCTAAATTTTGTGAATTGG 57.081 29.630 0.00 0.00 0.00 3.16
8256 8570 9.616156 TCAACCATTAGTACAAGTTGTTCTAAA 57.384 29.630 28.10 17.13 41.35 1.85
8257 8571 9.787435 ATCAACCATTAGTACAAGTTGTTCTAA 57.213 29.630 27.15 27.15 41.92 2.10
8258 8572 9.214957 CATCAACCATTAGTACAAGTTGTTCTA 57.785 33.333 14.90 15.51 39.05 2.10
8259 8573 7.174946 CCATCAACCATTAGTACAAGTTGTTCT 59.825 37.037 14.90 16.59 39.05 3.01
8260 8574 7.040686 ACCATCAACCATTAGTACAAGTTGTTC 60.041 37.037 14.90 9.32 39.05 3.18
8261 8575 6.775629 ACCATCAACCATTAGTACAAGTTGTT 59.224 34.615 14.90 0.00 39.05 2.83
8262 8576 6.303839 ACCATCAACCATTAGTACAAGTTGT 58.696 36.000 14.05 14.05 39.05 3.32
8263 8577 6.817765 ACCATCAACCATTAGTACAAGTTG 57.182 37.500 0.00 0.00 39.28 3.16
8293 8607 2.872245 GTGTCATGTCCCACGATATTGG 59.128 50.000 0.00 0.00 36.26 3.16
8302 8616 1.203250 TCCCTGTAGTGTCATGTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
8310 8624 4.202070 GCTCATAGTCTTCCCTGTAGTGTC 60.202 50.000 0.00 0.00 0.00 3.67
8311 8625 3.702045 GCTCATAGTCTTCCCTGTAGTGT 59.298 47.826 0.00 0.00 0.00 3.55
8312 8626 3.243234 CGCTCATAGTCTTCCCTGTAGTG 60.243 52.174 0.00 0.00 0.00 2.74
8313 8627 2.952978 CGCTCATAGTCTTCCCTGTAGT 59.047 50.000 0.00 0.00 0.00 2.73
8319 8633 0.105039 CACCCGCTCATAGTCTTCCC 59.895 60.000 0.00 0.00 0.00 3.97
8324 8638 1.269831 GGACATCACCCGCTCATAGTC 60.270 57.143 0.00 0.00 0.00 2.59
8326 8640 0.752658 TGGACATCACCCGCTCATAG 59.247 55.000 0.00 0.00 0.00 2.23
8356 8691 3.953542 ACTTCCACTTTGAAACCTCCT 57.046 42.857 0.00 0.00 0.00 3.69
8357 8692 3.490933 GCAACTTCCACTTTGAAACCTCC 60.491 47.826 0.00 0.00 0.00 4.30
8367 8702 1.202818 GGAGGACAGCAACTTCCACTT 60.203 52.381 0.00 0.00 34.36 3.16
8380 8715 0.413832 AGCAAGGTAGGAGGAGGACA 59.586 55.000 0.00 0.00 0.00 4.02
8386 8721 2.427506 GTTGTGAAGCAAGGTAGGAGG 58.572 52.381 0.00 0.00 37.83 4.30
8412 8747 6.478588 GTTCGGAAGATAGCAAAGTATGTTG 58.521 40.000 0.00 0.00 41.60 3.33
8478 8813 5.109210 CCAGACGCACAAATATAAGAGTCA 58.891 41.667 0.00 0.00 0.00 3.41
8492 8827 3.000041 TCATTTGTATCACCAGACGCAC 59.000 45.455 0.00 0.00 0.00 5.34
8497 8832 4.280436 ACCGTTCATTTGTATCACCAGA 57.720 40.909 0.00 0.00 0.00 3.86
8511 8846 1.626686 AAATGGCCATCAACCGTTCA 58.373 45.000 21.08 0.00 35.31 3.18
8518 8853 3.269381 ACTCTCCCTTAAATGGCCATCAA 59.731 43.478 21.08 15.09 0.00 2.57
8545 8880 0.605319 TTCGGTGACATCCTTGCCAC 60.605 55.000 0.00 0.00 35.67 5.01
8562 8897 6.391537 AGAGAGTATCAACTTTCTCGGTTTC 58.608 40.000 0.00 0.00 42.03 2.78
8579 8914 6.377429 ACGACACTTATGAATTGGAGAGAGTA 59.623 38.462 0.00 0.00 0.00 2.59
8584 8919 4.421058 CGACGACACTTATGAATTGGAGA 58.579 43.478 0.00 0.00 0.00 3.71
8589 8924 6.309737 GTCTAAACCGACGACACTTATGAATT 59.690 38.462 0.00 0.00 0.00 2.17
8593 8928 4.478699 TGTCTAAACCGACGACACTTATG 58.521 43.478 0.00 0.00 36.71 1.90
8598 8933 2.978489 CTCTTGTCTAAACCGACGACAC 59.022 50.000 0.00 0.00 37.40 3.67
8599 8934 2.620115 ACTCTTGTCTAAACCGACGACA 59.380 45.455 0.00 0.00 36.71 4.35
8600 8935 3.279853 ACTCTTGTCTAAACCGACGAC 57.720 47.619 0.00 0.00 36.71 4.34
8601 8936 4.067896 ACTACTCTTGTCTAAACCGACGA 58.932 43.478 0.00 0.00 36.71 4.20
8602 8937 4.416505 ACTACTCTTGTCTAAACCGACG 57.583 45.455 0.00 0.00 36.71 5.12
8607 8942 7.247019 CCGGTACTAACTACTCTTGTCTAAAC 58.753 42.308 0.00 0.00 0.00 2.01
8611 8978 4.268359 CCCGGTACTAACTACTCTTGTCT 58.732 47.826 0.00 0.00 0.00 3.41
8612 8979 3.181492 GCCCGGTACTAACTACTCTTGTC 60.181 52.174 0.00 0.00 0.00 3.18
8622 8989 0.459063 CGACAAGGCCCGGTACTAAC 60.459 60.000 0.00 0.00 0.00 2.34
8623 8990 0.899717 ACGACAAGGCCCGGTACTAA 60.900 55.000 0.00 0.00 0.00 2.24
8624 8991 1.304381 ACGACAAGGCCCGGTACTA 60.304 57.895 0.00 0.00 0.00 1.82
8625 8992 2.602568 ACGACAAGGCCCGGTACT 60.603 61.111 0.00 0.00 0.00 2.73
8643 9010 2.514013 GGTAATGACGCCGCAGACG 61.514 63.158 0.00 0.00 39.67 4.18
8646 9013 1.643292 CATGGTAATGACGCCGCAG 59.357 57.895 0.00 0.00 35.67 5.18
8685 9052 2.117156 ATGGCCGTCTCAGCATTGC 61.117 57.895 0.00 0.00 0.00 3.56
8689 9056 4.783621 GCCATGGCCGTCTCAGCA 62.784 66.667 27.24 0.00 34.56 4.41
8747 9114 9.688091 ACTGAGTCAGAGAAGATAAACATAGTA 57.312 33.333 26.86 0.00 35.18 1.82
8748 9115 8.588290 ACTGAGTCAGAGAAGATAAACATAGT 57.412 34.615 26.86 0.00 35.18 2.12
8750 9117 8.807118 ACAACTGAGTCAGAGAAGATAAACATA 58.193 33.333 26.86 0.00 35.18 2.29
8751 9118 7.675062 ACAACTGAGTCAGAGAAGATAAACAT 58.325 34.615 26.86 0.00 35.18 2.71
8771 9772 2.103094 TCTGCTACTGCTCACAACAACT 59.897 45.455 0.00 0.00 40.48 3.16
8772 9773 2.478134 CTCTGCTACTGCTCACAACAAC 59.522 50.000 0.00 0.00 40.48 3.32
8783 9784 1.137872 CCACCCTTAGCTCTGCTACTG 59.862 57.143 0.00 0.00 41.12 2.74
8795 9796 9.951866 TGCTATTATATGATCTATCCACCCTTA 57.048 33.333 0.00 0.00 0.00 2.69
8796 9797 8.860517 TGCTATTATATGATCTATCCACCCTT 57.139 34.615 0.00 0.00 0.00 3.95
8879 9885 7.495934 CGTGGAACTAGTTCATGGATTTATCTT 59.504 37.037 31.30 0.00 41.20 2.40
8881 9887 6.984474 TCGTGGAACTAGTTCATGGATTTATC 59.016 38.462 31.30 14.06 41.20 1.75
8906 9912 3.795688 AATGGCCACGAGATTATCCAT 57.204 42.857 8.16 0.00 35.99 3.41
8940 9947 1.079127 CGCTACCTCCCAACCAGTG 60.079 63.158 0.00 0.00 0.00 3.66
8949 9956 1.917872 AGATCTGATCCGCTACCTCC 58.082 55.000 13.83 0.00 0.00 4.30
8972 9979 5.174398 CGTTAATGTGGTTTATCGCGTATCT 59.826 40.000 5.77 0.00 0.00 1.98
8973 9980 5.173673 TCGTTAATGTGGTTTATCGCGTATC 59.826 40.000 5.77 0.00 0.00 2.24
8979 9986 5.630896 ATCGTCGTTAATGTGGTTTATCG 57.369 39.130 0.00 0.00 0.00 2.92
8982 9989 7.315142 AGTAGAATCGTCGTTAATGTGGTTTA 58.685 34.615 0.00 0.00 0.00 2.01
8985 9992 5.320549 AGTAGAATCGTCGTTAATGTGGT 57.679 39.130 0.00 0.00 0.00 4.16
8993 10000 5.412594 TGTTACAGGTAGTAGAATCGTCGTT 59.587 40.000 0.00 0.00 33.43 3.85
8998 10005 4.982916 GGCATGTTACAGGTAGTAGAATCG 59.017 45.833 0.00 0.00 33.43 3.34
9006 10013 4.699735 TCACAAATGGCATGTTACAGGTAG 59.300 41.667 0.00 0.00 0.00 3.18
9010 10017 3.758023 TCCTCACAAATGGCATGTTACAG 59.242 43.478 0.00 0.00 0.00 2.74
9032 10039 2.033299 CGCAGGACATCAACTTTGTGTT 59.967 45.455 0.00 0.00 39.92 3.32
9033 10040 1.603802 CGCAGGACATCAACTTTGTGT 59.396 47.619 0.00 0.00 0.00 3.72
9048 10055 3.746949 GAGGAGGCACCATCGCAGG 62.747 68.421 3.18 0.00 42.04 4.85
9057 10064 1.743252 CCAAGCTTCGAGGAGGCAC 60.743 63.158 0.00 0.00 37.11 5.01
9080 10088 1.424302 AGGGGAATGATGCAGATCCAG 59.576 52.381 10.77 0.00 33.48 3.86
9086 10094 0.947244 GCGTAAGGGGAATGATGCAG 59.053 55.000 0.00 0.00 38.28 4.41
9101 10109 0.109827 TTGAAATCCGTCGACGCGTA 60.110 50.000 31.73 19.03 38.18 4.42
9103 10111 1.340465 CTTGAAATCCGTCGACGCG 59.660 57.895 31.73 23.52 38.18 6.01
9110 10118 1.001815 CAAACGCCACTTGAAATCCGT 60.002 47.619 0.00 0.00 0.00 4.69
9111 10119 1.265635 TCAAACGCCACTTGAAATCCG 59.734 47.619 0.00 0.00 29.93 4.18
9114 10122 3.317711 TGTCATCAAACGCCACTTGAAAT 59.682 39.130 0.00 0.00 36.43 2.17
9118 10126 2.772568 TTGTCATCAAACGCCACTTG 57.227 45.000 0.00 0.00 0.00 3.16
9129 10137 4.886489 TCAAAGTCCATGTGTTTGTCATCA 59.114 37.500 10.00 0.00 33.69 3.07
9138 10146 3.312736 AACCCTTCAAAGTCCATGTGT 57.687 42.857 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.