Multiple sequence alignment - TraesCS6D01G086500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G086500 chr6D 100.000 2573 0 0 1 2573 52127484 52130056 0.000000e+00 4752.0
1 TraesCS6D01G086500 chr6D 82.669 652 51 21 689 1331 52007281 52007879 2.930000e-144 521.0
2 TraesCS6D01G086500 chr6D 84.810 395 43 6 2022 2400 52008362 52008755 5.200000e-102 381.0
3 TraesCS6D01G086500 chr6D 94.937 158 8 0 2401 2558 52278845 52279002 5.500000e-62 248.0
4 TraesCS6D01G086500 chr6D 84.047 257 40 1 1 256 52006778 52007034 1.980000e-61 246.0
5 TraesCS6D01G086500 chr6D 92.994 157 11 0 2402 2558 237409963 237410119 1.990000e-56 230.0
6 TraesCS6D01G086500 chr6D 80.992 242 28 14 449 689 52007027 52007251 2.630000e-40 176.0
7 TraesCS6D01G086500 chr6D 83.237 173 13 6 1637 1807 52008165 52008323 7.420000e-31 145.0
8 TraesCS6D01G086500 chr6A 96.490 1624 43 6 1 1616 63069798 63071415 0.000000e+00 2671.0
9 TraesCS6D01G086500 chr6A 81.667 660 49 28 689 1331 63017750 63018354 1.380000e-132 483.0
10 TraesCS6D01G086500 chr6A 87.404 389 38 5 2022 2401 63072018 63072404 1.090000e-118 436.0
11 TraesCS6D01G086500 chr6A 87.402 381 18 18 1637 2003 63018641 63019005 6.630000e-111 411.0
12 TraesCS6D01G086500 chr6A 93.258 178 9 2 1830 2004 63071858 63072035 2.540000e-65 259.0
13 TraesCS6D01G086500 chr6A 86.735 196 12 6 449 641 63017464 63017648 3.360000e-49 206.0
14 TraesCS6D01G086500 chr6A 97.143 35 1 0 1639 1673 63071416 63071450 2.760000e-05 60.2
15 TraesCS6D01G086500 chr6B 92.928 806 42 9 784 1589 118938407 118939197 0.000000e+00 1158.0
16 TraesCS6D01G086500 chr6B 86.207 377 33 11 1637 2004 118934129 118934495 8.630000e-105 390.0
17 TraesCS6D01G086500 chr6B 94.142 239 10 3 1769 2004 118939658 118939895 6.770000e-96 361.0
18 TraesCS6D01G086500 chr6B 93.939 198 9 2 447 641 118937758 118937955 1.940000e-76 296.0
19 TraesCS6D01G086500 chr6B 86.245 269 28 5 1072 1331 118933552 118933820 1.510000e-72 283.0
20 TraesCS6D01G086500 chr6B 92.265 181 10 1 689 869 118933112 118933288 1.180000e-63 254.0
21 TraesCS6D01G086500 chr6B 85.106 188 21 2 2022 2202 118934478 118934665 4.370000e-43 185.0
22 TraesCS6D01G086500 chr6B 87.597 129 4 5 562 689 118937998 118938115 3.450000e-29 139.0
23 TraesCS6D01G086500 chr6B 90.909 99 9 0 689 787 118938149 118938247 1.610000e-27 134.0
24 TraesCS6D01G086500 chr6B 80.682 176 10 9 868 1043 118933402 118933553 5.820000e-22 115.0
25 TraesCS6D01G086500 chr6B 97.059 34 1 0 1640 1673 118939213 118939246 9.940000e-05 58.4
26 TraesCS6D01G086500 chr4B 93.684 190 12 0 258 447 665293818 665294007 4.190000e-73 285.0
27 TraesCS6D01G086500 chr4B 92.903 155 11 0 2403 2557 27948533 27948687 2.580000e-55 226.0
28 TraesCS6D01G086500 chr2B 93.264 193 13 0 255 447 475124884 475125076 4.190000e-73 285.0
29 TraesCS6D01G086500 chr2B 93.651 189 11 1 259 447 452910178 452910365 5.420000e-72 281.0
30 TraesCS6D01G086500 chr7B 93.651 189 12 0 259 447 706480200 706480012 1.510000e-72 283.0
31 TraesCS6D01G086500 chr7B 93.651 189 11 1 259 447 498599769 498599582 5.420000e-72 281.0
32 TraesCS6D01G086500 chr3B 92.462 199 14 1 249 447 745557030 745557227 1.510000e-72 283.0
33 TraesCS6D01G086500 chrUn 92.784 194 13 1 254 447 50438340 50438148 1.950000e-71 279.0
34 TraesCS6D01G086500 chrUn 92.386 197 14 1 251 447 263185288 263185483 1.950000e-71 279.0
35 TraesCS6D01G086500 chr7A 94.937 158 8 0 2401 2558 187942252 187942095 5.500000e-62 248.0
36 TraesCS6D01G086500 chr1D 93.671 158 10 0 2401 2558 160532920 160532763 1.190000e-58 237.0
37 TraesCS6D01G086500 chr1D 93.038 158 11 0 2401 2558 160538398 160538241 5.540000e-57 231.0
38 TraesCS6D01G086500 chr4A 93.631 157 10 0 2402 2558 191102709 191102553 4.280000e-58 235.0
39 TraesCS6D01G086500 chr5D 93.590 156 10 0 2401 2556 442358755 442358600 1.540000e-57 233.0
40 TraesCS6D01G086500 chr3A 92.994 157 11 0 2402 2558 682356883 682356727 1.990000e-56 230.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G086500 chr6D 52127484 52130056 2572 False 4752.000000 4752 100.000000 1 2573 1 chr6D.!!$F1 2572
1 TraesCS6D01G086500 chr6D 52006778 52008755 1977 False 293.800000 521 83.151000 1 2400 5 chr6D.!!$F4 2399
2 TraesCS6D01G086500 chr6A 63069798 63072404 2606 False 856.550000 2671 93.573750 1 2401 4 chr6A.!!$F2 2400
3 TraesCS6D01G086500 chr6A 63017464 63019005 1541 False 366.666667 483 85.268000 449 2003 3 chr6A.!!$F1 1554
4 TraesCS6D01G086500 chr6B 118933112 118939895 6783 False 306.672727 1158 89.734455 447 2202 11 chr6B.!!$F1 1755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 412 0.676466 TCCGGCACCATCACAACATC 60.676 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1634 6234 0.179 CTGTTTCATCTCCTCCCCCG 59.821 60.0 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 2.599082 GTCGTGACTCGCAATAAGGAAG 59.401 50.000 0.00 0.00 39.67 3.46
126 127 3.071479 AGCACGTGTAGGTTACATTTGG 58.929 45.455 18.38 0.00 41.34 3.28
254 256 9.926158 TCTAATCAAATCAGAGAGCAGATTATC 57.074 33.333 0.00 0.00 33.58 1.75
325 327 3.505293 AGAGTACAAGTCACGTAAGGACC 59.495 47.826 0.00 0.00 46.39 4.46
344 346 4.023193 GGACCGACATGACAAAACTGAAAT 60.023 41.667 0.00 0.00 0.00 2.17
376 378 3.181451 ACATCTCTGAGCTTGACACCAAA 60.181 43.478 12.47 0.00 0.00 3.28
380 382 1.165907 TGAGCTTGACACCAAAGCCG 61.166 55.000 4.61 0.00 31.38 5.52
410 412 0.676466 TCCGGCACCATCACAACATC 60.676 55.000 0.00 0.00 0.00 3.06
411 413 0.959867 CCGGCACCATCACAACATCA 60.960 55.000 0.00 0.00 0.00 3.07
413 415 1.064505 CGGCACCATCACAACATCATC 59.935 52.381 0.00 0.00 0.00 2.92
415 417 1.064505 GCACCATCACAACATCATCCG 59.935 52.381 0.00 0.00 0.00 4.18
858 5446 2.025037 TGGCTGGTTGCTATTTGAGGAT 60.025 45.455 0.00 0.00 42.39 3.24
927 5515 2.097466 CCCTTGTGCTATTTAACTGCCG 59.903 50.000 0.00 0.00 0.00 5.69
1008 5599 3.606687 GTTCCGTCACAATATGTTCCCT 58.393 45.455 0.00 0.00 0.00 4.20
1196 5790 2.277692 CGACGGCGATAACGAGCA 60.278 61.111 16.62 0.00 42.66 4.26
1245 5839 2.734755 TCAATAAGGTGCCCCATCAG 57.265 50.000 0.00 0.00 0.00 2.90
1490 6090 1.079750 GGCTGGAGAACGACAGGAC 60.080 63.158 0.00 0.00 35.30 3.85
1532 6132 1.572085 CTGGTGAAGGTCAAGCGCAG 61.572 60.000 11.47 0.72 0.00 5.18
1728 6681 9.103861 GAATGTTCACCTATTTTGGTTTTTGAA 57.896 29.630 0.00 0.00 38.45 2.69
1783 6737 1.336755 GAAAAGGTGAAGCGCTTTGGA 59.663 47.619 25.84 8.77 0.00 3.53
1904 6864 0.471617 AATCTCCTCTCCCCATTGCG 59.528 55.000 0.00 0.00 0.00 4.85
1949 6912 4.637091 TGATGCATCTCAATACTTGTGGTG 59.363 41.667 26.32 0.00 38.08 4.17
1980 6943 1.003118 CAGCTTGCTACAAGGTGGGTA 59.997 52.381 24.62 0.00 40.85 3.69
1986 6949 0.539986 CTACAAGGTGGGTATGCCGT 59.460 55.000 0.00 0.00 34.97 5.68
1987 6950 0.985760 TACAAGGTGGGTATGCCGTT 59.014 50.000 0.00 0.00 34.97 4.44
1988 6951 0.608035 ACAAGGTGGGTATGCCGTTG 60.608 55.000 0.00 0.00 34.97 4.10
1989 6952 1.677633 AAGGTGGGTATGCCGTTGC 60.678 57.895 0.00 0.00 34.97 4.17
1990 6953 2.045340 GGTGGGTATGCCGTTGCT 60.045 61.111 0.00 0.00 38.71 3.91
1991 6954 2.406616 GGTGGGTATGCCGTTGCTG 61.407 63.158 0.00 0.00 38.71 4.41
1992 6955 1.376683 GTGGGTATGCCGTTGCTGA 60.377 57.895 0.00 0.00 38.71 4.26
1993 6956 0.958382 GTGGGTATGCCGTTGCTGAA 60.958 55.000 0.00 0.00 38.71 3.02
1994 6957 0.034574 TGGGTATGCCGTTGCTGAAT 60.035 50.000 0.00 0.00 38.71 2.57
1995 6958 1.102978 GGGTATGCCGTTGCTGAATT 58.897 50.000 0.00 0.00 38.71 2.17
1996 6959 1.202290 GGGTATGCCGTTGCTGAATTG 60.202 52.381 0.00 0.00 38.71 2.32
1997 6960 1.472480 GGTATGCCGTTGCTGAATTGT 59.528 47.619 0.00 0.00 38.71 2.71
1998 6961 2.518949 GTATGCCGTTGCTGAATTGTG 58.481 47.619 0.00 0.00 38.71 3.33
1999 6962 0.961019 ATGCCGTTGCTGAATTGTGT 59.039 45.000 0.00 0.00 38.71 3.72
2000 6963 0.030504 TGCCGTTGCTGAATTGTGTG 59.969 50.000 0.00 0.00 38.71 3.82
2001 6964 0.030638 GCCGTTGCTGAATTGTGTGT 59.969 50.000 0.00 0.00 33.53 3.72
2002 6965 1.265635 GCCGTTGCTGAATTGTGTGTA 59.734 47.619 0.00 0.00 33.53 2.90
2003 6966 2.095263 GCCGTTGCTGAATTGTGTGTAT 60.095 45.455 0.00 0.00 33.53 2.29
2004 6967 3.611530 GCCGTTGCTGAATTGTGTGTATT 60.612 43.478 0.00 0.00 33.53 1.89
2005 6968 4.545610 CCGTTGCTGAATTGTGTGTATTT 58.454 39.130 0.00 0.00 0.00 1.40
2006 6969 4.981674 CCGTTGCTGAATTGTGTGTATTTT 59.018 37.500 0.00 0.00 0.00 1.82
2007 6970 5.461737 CCGTTGCTGAATTGTGTGTATTTTT 59.538 36.000 0.00 0.00 0.00 1.94
2076 7039 3.751246 CGGTGGTTGCCATGCCAG 61.751 66.667 0.00 0.00 35.28 4.85
2101 7064 1.106351 TGGCGTTGACTTGTGGCATT 61.106 50.000 0.00 0.00 31.42 3.56
2112 7083 3.190535 ACTTGTGGCATTGGTATCGTTTC 59.809 43.478 0.00 0.00 0.00 2.78
2138 7115 0.536687 ATGATCGGAGCCATGCCAAG 60.537 55.000 0.00 0.00 0.00 3.61
2149 7129 1.632422 CATGCCAAGAAATTGGTCGC 58.368 50.000 8.69 0.00 43.90 5.19
2258 7238 1.447317 GACGCGGGCATCATCCAAAT 61.447 55.000 12.47 0.00 0.00 2.32
2259 7239 0.179032 ACGCGGGCATCATCCAAATA 60.179 50.000 12.47 0.00 0.00 1.40
2265 7245 0.883833 GCATCATCCAAATAGCCCCG 59.116 55.000 0.00 0.00 0.00 5.73
2280 7260 2.603473 CCGGTGTCTCCCACTCCA 60.603 66.667 0.00 0.00 43.94 3.86
2301 7281 7.405272 ACTCCATCATTATCCATGGTATGAGAT 59.595 37.037 22.18 15.03 40.59 2.75
2312 7292 5.243060 CCATGGTATGAGATGCATTGAATGT 59.757 40.000 2.57 0.00 38.44 2.71
2314 7294 4.037089 TGGTATGAGATGCATTGAATGTGC 59.963 41.667 7.05 0.00 42.81 4.57
2327 7307 2.890311 TGAATGTGCCGTCATCCTTTTT 59.110 40.909 0.00 0.00 0.00 1.94
2331 7311 2.293122 TGTGCCGTCATCCTTTTTCTTG 59.707 45.455 0.00 0.00 0.00 3.02
2343 7325 5.560724 TCCTTTTTCTTGGAGATAGTGTGG 58.439 41.667 0.00 0.00 0.00 4.17
2367 7349 3.071747 GTGGTCAAAGAAGAGGAGGAAGT 59.928 47.826 0.00 0.00 0.00 3.01
2369 7351 3.325135 GGTCAAAGAAGAGGAGGAAGTCA 59.675 47.826 0.00 0.00 0.00 3.41
2382 7364 5.308237 AGGAGGAAGTCAAGAGTAACATGTT 59.692 40.000 16.68 16.68 0.00 2.71
2392 7374 6.824196 TCAAGAGTAACATGTTGGTGTTTGTA 59.176 34.615 21.42 0.00 42.08 2.41
2401 7383 2.248280 TGGTGTTTGTAGTGATGCGT 57.752 45.000 0.00 0.00 0.00 5.24
2402 7384 1.870402 TGGTGTTTGTAGTGATGCGTG 59.130 47.619 0.00 0.00 0.00 5.34
2403 7385 1.871039 GGTGTTTGTAGTGATGCGTGT 59.129 47.619 0.00 0.00 0.00 4.49
2404 7386 2.289547 GGTGTTTGTAGTGATGCGTGTT 59.710 45.455 0.00 0.00 0.00 3.32
2405 7387 3.288242 GTGTTTGTAGTGATGCGTGTTG 58.712 45.455 0.00 0.00 0.00 3.33
2406 7388 3.001838 GTGTTTGTAGTGATGCGTGTTGA 59.998 43.478 0.00 0.00 0.00 3.18
2407 7389 3.623510 TGTTTGTAGTGATGCGTGTTGAA 59.376 39.130 0.00 0.00 0.00 2.69
2408 7390 3.870723 TTGTAGTGATGCGTGTTGAAC 57.129 42.857 0.00 0.00 0.00 3.18
2425 7407 8.722342 GTGTTGAACGTGACATATTTTGTATT 57.278 30.769 0.00 0.00 39.18 1.89
2426 7408 8.626576 GTGTTGAACGTGACATATTTTGTATTG 58.373 33.333 0.00 0.00 39.18 1.90
2427 7409 7.324856 TGTTGAACGTGACATATTTTGTATTGC 59.675 33.333 0.00 0.00 39.18 3.56
2428 7410 7.139896 TGAACGTGACATATTTTGTATTGCT 57.860 32.000 0.00 0.00 39.18 3.91
2429 7411 8.257830 TGAACGTGACATATTTTGTATTGCTA 57.742 30.769 0.00 0.00 39.18 3.49
2430 7412 8.888716 TGAACGTGACATATTTTGTATTGCTAT 58.111 29.630 0.00 0.00 39.18 2.97
2431 7413 9.716507 GAACGTGACATATTTTGTATTGCTATT 57.283 29.630 0.00 0.00 39.18 1.73
2432 7414 9.716507 AACGTGACATATTTTGTATTGCTATTC 57.283 29.630 0.00 0.00 39.18 1.75
2433 7415 8.342634 ACGTGACATATTTTGTATTGCTATTCC 58.657 33.333 0.00 0.00 39.18 3.01
2434 7416 8.559536 CGTGACATATTTTGTATTGCTATTCCT 58.440 33.333 0.00 0.00 39.18 3.36
2442 7424 8.589335 TTTTGTATTGCTATTCCTATCGTCTC 57.411 34.615 0.00 0.00 0.00 3.36
2443 7425 7.526142 TTGTATTGCTATTCCTATCGTCTCT 57.474 36.000 0.00 0.00 0.00 3.10
2444 7426 8.631480 TTGTATTGCTATTCCTATCGTCTCTA 57.369 34.615 0.00 0.00 0.00 2.43
2445 7427 8.270080 TGTATTGCTATTCCTATCGTCTCTAG 57.730 38.462 0.00 0.00 0.00 2.43
2446 7428 5.630661 TTGCTATTCCTATCGTCTCTAGC 57.369 43.478 0.00 0.00 0.00 3.42
2447 7429 4.011023 TGCTATTCCTATCGTCTCTAGCC 58.989 47.826 0.00 0.00 31.38 3.93
2448 7430 4.263550 TGCTATTCCTATCGTCTCTAGCCT 60.264 45.833 0.00 0.00 31.38 4.58
2449 7431 4.703093 GCTATTCCTATCGTCTCTAGCCTT 59.297 45.833 0.00 0.00 0.00 4.35
2450 7432 5.392595 GCTATTCCTATCGTCTCTAGCCTTG 60.393 48.000 0.00 0.00 0.00 3.61
2451 7433 3.579534 TCCTATCGTCTCTAGCCTTGT 57.420 47.619 0.00 0.00 0.00 3.16
2452 7434 4.701651 TCCTATCGTCTCTAGCCTTGTA 57.298 45.455 0.00 0.00 0.00 2.41
2453 7435 5.244189 TCCTATCGTCTCTAGCCTTGTAT 57.756 43.478 0.00 0.00 0.00 2.29
2454 7436 6.370186 TCCTATCGTCTCTAGCCTTGTATA 57.630 41.667 0.00 0.00 0.00 1.47
2455 7437 6.408035 TCCTATCGTCTCTAGCCTTGTATAG 58.592 44.000 0.00 0.00 0.00 1.31
2456 7438 6.013553 TCCTATCGTCTCTAGCCTTGTATAGT 60.014 42.308 0.00 0.00 0.00 2.12
2457 7439 6.655848 CCTATCGTCTCTAGCCTTGTATAGTT 59.344 42.308 0.00 0.00 0.00 2.24
2458 7440 5.752892 TCGTCTCTAGCCTTGTATAGTTG 57.247 43.478 0.00 0.00 0.00 3.16
2459 7441 5.434408 TCGTCTCTAGCCTTGTATAGTTGA 58.566 41.667 0.00 0.00 0.00 3.18
2460 7442 5.296283 TCGTCTCTAGCCTTGTATAGTTGAC 59.704 44.000 0.00 0.00 0.00 3.18
2461 7443 5.297278 CGTCTCTAGCCTTGTATAGTTGACT 59.703 44.000 0.00 0.00 0.00 3.41
2462 7444 6.183360 CGTCTCTAGCCTTGTATAGTTGACTT 60.183 42.308 0.00 0.00 0.00 3.01
2463 7445 7.197703 GTCTCTAGCCTTGTATAGTTGACTTC 58.802 42.308 0.00 0.00 0.00 3.01
2464 7446 7.067737 GTCTCTAGCCTTGTATAGTTGACTTCT 59.932 40.741 0.00 0.00 0.00 2.85
2465 7447 8.272889 TCTCTAGCCTTGTATAGTTGACTTCTA 58.727 37.037 0.00 0.00 0.00 2.10
2466 7448 8.453238 TCTAGCCTTGTATAGTTGACTTCTAG 57.547 38.462 0.00 0.00 0.00 2.43
2467 7449 8.272889 TCTAGCCTTGTATAGTTGACTTCTAGA 58.727 37.037 0.00 0.00 0.00 2.43
2468 7450 7.341445 AGCCTTGTATAGTTGACTTCTAGAG 57.659 40.000 0.00 0.00 0.00 2.43
2469 7451 6.322712 AGCCTTGTATAGTTGACTTCTAGAGG 59.677 42.308 0.00 0.00 0.00 3.69
2470 7452 6.097129 GCCTTGTATAGTTGACTTCTAGAGGT 59.903 42.308 7.31 7.31 0.00 3.85
2471 7453 7.284944 GCCTTGTATAGTTGACTTCTAGAGGTA 59.715 40.741 7.60 0.00 0.00 3.08
2472 7454 9.357161 CCTTGTATAGTTGACTTCTAGAGGTAT 57.643 37.037 7.60 0.18 0.00 2.73
2474 7456 8.693120 TGTATAGTTGACTTCTAGAGGTATGG 57.307 38.462 7.60 0.00 0.00 2.74
2475 7457 8.280084 TGTATAGTTGACTTCTAGAGGTATGGT 58.720 37.037 7.60 0.00 0.00 3.55
2476 7458 9.790344 GTATAGTTGACTTCTAGAGGTATGGTA 57.210 37.037 7.60 0.00 0.00 3.25
2477 7459 8.927675 ATAGTTGACTTCTAGAGGTATGGTAG 57.072 38.462 7.60 0.00 0.00 3.18
2478 7460 6.130569 AGTTGACTTCTAGAGGTATGGTAGG 58.869 44.000 7.60 0.00 0.00 3.18
2479 7461 5.988865 TGACTTCTAGAGGTATGGTAGGA 57.011 43.478 7.60 0.00 0.00 2.94
2480 7462 6.532119 TGACTTCTAGAGGTATGGTAGGAT 57.468 41.667 7.60 0.00 0.00 3.24
2481 7463 6.923670 TGACTTCTAGAGGTATGGTAGGATT 58.076 40.000 7.60 0.00 0.00 3.01
2482 7464 8.053776 TGACTTCTAGAGGTATGGTAGGATTA 57.946 38.462 7.60 0.00 0.00 1.75
2483 7465 8.164733 TGACTTCTAGAGGTATGGTAGGATTAG 58.835 40.741 7.60 0.00 0.00 1.73
2484 7466 8.059565 ACTTCTAGAGGTATGGTAGGATTAGT 57.940 38.462 5.57 0.00 0.00 2.24
2485 7467 8.512813 ACTTCTAGAGGTATGGTAGGATTAGTT 58.487 37.037 5.57 0.00 0.00 2.24
2486 7468 9.369672 CTTCTAGAGGTATGGTAGGATTAGTTT 57.630 37.037 0.00 0.00 0.00 2.66
2487 7469 8.937207 TCTAGAGGTATGGTAGGATTAGTTTC 57.063 38.462 0.00 0.00 0.00 2.78
2488 7470 6.997942 AGAGGTATGGTAGGATTAGTTTCC 57.002 41.667 0.00 0.00 35.90 3.13
2490 7472 7.140304 AGAGGTATGGTAGGATTAGTTTCCTT 58.860 38.462 0.00 0.00 43.88 3.36
2491 7473 7.071321 AGAGGTATGGTAGGATTAGTTTCCTTG 59.929 40.741 0.00 0.00 43.88 3.61
2492 7474 6.677076 AGGTATGGTAGGATTAGTTTCCTTGT 59.323 38.462 0.00 0.00 43.88 3.16
2493 7475 6.990939 GGTATGGTAGGATTAGTTTCCTTGTC 59.009 42.308 0.00 0.00 43.88 3.18
2494 7476 6.636454 ATGGTAGGATTAGTTTCCTTGTCA 57.364 37.500 0.00 0.00 43.88 3.58
2495 7477 5.801380 TGGTAGGATTAGTTTCCTTGTCAC 58.199 41.667 0.00 0.00 43.88 3.67
2496 7478 4.868734 GGTAGGATTAGTTTCCTTGTCACG 59.131 45.833 0.00 0.00 43.88 4.35
2497 7479 3.335579 AGGATTAGTTTCCTTGTCACGC 58.664 45.455 0.00 0.00 43.88 5.34
2498 7480 3.071479 GGATTAGTTTCCTTGTCACGCA 58.929 45.455 0.00 0.00 32.68 5.24
2499 7481 3.500680 GGATTAGTTTCCTTGTCACGCAA 59.499 43.478 0.00 0.00 35.50 4.85
2508 7490 1.511850 TTGTCACGCAAGACATCCTG 58.488 50.000 8.81 0.00 46.90 3.86
2509 7491 0.392706 TGTCACGCAAGACATCCTGT 59.607 50.000 4.26 0.00 43.18 4.00
2510 7492 0.792640 GTCACGCAAGACATCCTGTG 59.207 55.000 0.97 0.00 43.62 3.66
2511 7493 0.392706 TCACGCAAGACATCCTGTGT 59.607 50.000 0.00 0.00 45.83 3.72
2512 7494 1.616374 TCACGCAAGACATCCTGTGTA 59.384 47.619 0.00 0.00 42.36 2.90
2513 7495 2.233676 TCACGCAAGACATCCTGTGTAT 59.766 45.455 0.00 0.00 42.36 2.29
2514 7496 3.445805 TCACGCAAGACATCCTGTGTATA 59.554 43.478 0.00 0.00 42.36 1.47
2515 7497 4.099419 TCACGCAAGACATCCTGTGTATAT 59.901 41.667 0.00 0.00 42.36 0.86
2516 7498 5.300792 TCACGCAAGACATCCTGTGTATATA 59.699 40.000 0.00 0.00 42.36 0.86
2517 7499 6.015434 TCACGCAAGACATCCTGTGTATATAT 60.015 38.462 0.00 0.00 42.36 0.86
2518 7500 6.646653 CACGCAAGACATCCTGTGTATATATT 59.353 38.462 0.00 0.00 42.36 1.28
2519 7501 6.646653 ACGCAAGACATCCTGTGTATATATTG 59.353 38.462 0.00 0.00 42.36 1.90
2520 7502 6.646653 CGCAAGACATCCTGTGTATATATTGT 59.353 38.462 0.00 0.00 42.36 2.71
2521 7503 7.812669 CGCAAGACATCCTGTGTATATATTGTA 59.187 37.037 0.00 0.00 42.36 2.41
2522 7504 9.489084 GCAAGACATCCTGTGTATATATTGTAA 57.511 33.333 0.00 0.00 42.36 2.41
2524 7506 9.998106 AAGACATCCTGTGTATATATTGTAACC 57.002 33.333 0.00 0.00 42.36 2.85
2525 7507 9.154632 AGACATCCTGTGTATATATTGTAACCA 57.845 33.333 0.00 0.00 42.36 3.67
2526 7508 9.772973 GACATCCTGTGTATATATTGTAACCAA 57.227 33.333 0.00 0.00 42.36 3.67
2527 7509 9.555727 ACATCCTGTGTATATATTGTAACCAAC 57.444 33.333 0.00 0.00 39.91 3.77
2528 7510 8.999431 CATCCTGTGTATATATTGTAACCAACC 58.001 37.037 0.00 0.00 32.26 3.77
2529 7511 7.511268 TCCTGTGTATATATTGTAACCAACCC 58.489 38.462 0.00 0.00 32.26 4.11
2530 7512 6.713450 CCTGTGTATATATTGTAACCAACCCC 59.287 42.308 0.00 0.00 32.26 4.95
2531 7513 7.209340 TGTGTATATATTGTAACCAACCCCA 57.791 36.000 0.00 0.00 32.26 4.96
2532 7514 7.817440 TGTGTATATATTGTAACCAACCCCAT 58.183 34.615 0.00 0.00 32.26 4.00
2533 7515 8.946248 TGTGTATATATTGTAACCAACCCCATA 58.054 33.333 0.00 0.00 32.26 2.74
2534 7516 9.444600 GTGTATATATTGTAACCAACCCCATAG 57.555 37.037 0.00 0.00 32.26 2.23
2535 7517 9.395068 TGTATATATTGTAACCAACCCCATAGA 57.605 33.333 0.00 0.00 32.26 1.98
2540 7522 6.390048 TTGTAACCAACCCCATAGAATACA 57.610 37.500 0.00 0.00 0.00 2.29
2541 7523 6.390048 TGTAACCAACCCCATAGAATACAA 57.610 37.500 0.00 0.00 0.00 2.41
2542 7524 6.975949 TGTAACCAACCCCATAGAATACAAT 58.024 36.000 0.00 0.00 0.00 2.71
2543 7525 8.103660 TGTAACCAACCCCATAGAATACAATA 57.896 34.615 0.00 0.00 0.00 1.90
2544 7526 8.558312 TGTAACCAACCCCATAGAATACAATAA 58.442 33.333 0.00 0.00 0.00 1.40
2545 7527 9.063615 GTAACCAACCCCATAGAATACAATAAG 57.936 37.037 0.00 0.00 0.00 1.73
2546 7528 7.220890 ACCAACCCCATAGAATACAATAAGT 57.779 36.000 0.00 0.00 0.00 2.24
2547 7529 7.648770 ACCAACCCCATAGAATACAATAAGTT 58.351 34.615 0.00 0.00 0.00 2.66
2548 7530 7.559897 ACCAACCCCATAGAATACAATAAGTTG 59.440 37.037 0.00 0.00 41.20 3.16
2549 7531 7.425606 CAACCCCATAGAATACAATAAGTTGC 58.574 38.462 0.00 0.00 38.96 4.17
2550 7532 6.668645 ACCCCATAGAATACAATAAGTTGCA 58.331 36.000 0.00 0.00 38.96 4.08
2551 7533 7.297614 ACCCCATAGAATACAATAAGTTGCAT 58.702 34.615 0.00 0.00 38.96 3.96
2552 7534 7.448469 ACCCCATAGAATACAATAAGTTGCATC 59.552 37.037 0.00 0.00 38.96 3.91
2553 7535 7.094205 CCCCATAGAATACAATAAGTTGCATCC 60.094 40.741 0.00 0.00 38.96 3.51
2554 7536 7.667219 CCCATAGAATACAATAAGTTGCATCCT 59.333 37.037 0.00 0.00 38.96 3.24
2555 7537 9.725019 CCATAGAATACAATAAGTTGCATCCTA 57.275 33.333 0.00 0.00 38.96 2.94
2558 7540 8.668510 AGAATACAATAAGTTGCATCCTACAG 57.331 34.615 0.00 0.00 38.96 2.74
2559 7541 8.267894 AGAATACAATAAGTTGCATCCTACAGT 58.732 33.333 0.00 0.00 38.96 3.55
2560 7542 8.807948 AATACAATAAGTTGCATCCTACAGTT 57.192 30.769 0.00 0.00 38.96 3.16
2561 7543 8.807948 ATACAATAAGTTGCATCCTACAGTTT 57.192 30.769 0.00 0.00 38.96 2.66
2562 7544 9.899661 ATACAATAAGTTGCATCCTACAGTTTA 57.100 29.630 0.00 0.00 38.96 2.01
2563 7545 8.040716 ACAATAAGTTGCATCCTACAGTTTAC 57.959 34.615 0.00 0.00 38.96 2.01
2564 7546 7.120726 ACAATAAGTTGCATCCTACAGTTTACC 59.879 37.037 0.00 0.00 38.96 2.85
2565 7547 4.910458 AGTTGCATCCTACAGTTTACCT 57.090 40.909 0.00 0.00 0.00 3.08
2566 7548 5.242795 AGTTGCATCCTACAGTTTACCTT 57.757 39.130 0.00 0.00 0.00 3.50
2567 7549 6.368779 AGTTGCATCCTACAGTTTACCTTA 57.631 37.500 0.00 0.00 0.00 2.69
2568 7550 6.171213 AGTTGCATCCTACAGTTTACCTTAC 58.829 40.000 0.00 0.00 0.00 2.34
2569 7551 5.748670 TGCATCCTACAGTTTACCTTACA 57.251 39.130 0.00 0.00 0.00 2.41
2570 7552 6.116711 TGCATCCTACAGTTTACCTTACAA 57.883 37.500 0.00 0.00 0.00 2.41
2571 7553 6.717289 TGCATCCTACAGTTTACCTTACAAT 58.283 36.000 0.00 0.00 0.00 2.71
2572 7554 6.821665 TGCATCCTACAGTTTACCTTACAATC 59.178 38.462 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 2.413634 GCCAAATGTAACCTACACGTGC 60.414 50.000 17.22 0.00 42.23 5.34
126 127 5.423717 CAAACATGAATCTCACGTATACGC 58.576 41.667 24.64 7.46 44.43 4.42
276 278 9.035607 GTTCTTTATGATATGAATGAGACACGT 57.964 33.333 0.00 0.00 0.00 4.49
277 279 9.034544 TGTTCTTTATGATATGAATGAGACACG 57.965 33.333 0.00 0.00 0.00 4.49
325 327 6.467047 GCTATCATTTCAGTTTTGTCATGTCG 59.533 38.462 0.00 0.00 0.00 4.35
858 5446 8.796475 CCTCTGTTATTTCCTTCTTCATTTCAA 58.204 33.333 0.00 0.00 0.00 2.69
927 5515 4.972875 CTGAGGATCTGGGTTGCC 57.027 61.111 0.00 0.00 34.92 4.52
1008 5599 2.734591 GTCGGATCTGCGGCCATA 59.265 61.111 2.24 0.00 0.00 2.74
1115 5706 0.179179 GCTCTTGTTCGCTTGATGCC 60.179 55.000 0.00 0.00 38.78 4.40
1532 6132 4.821589 CGCCGAGCTCCAGTTCCC 62.822 72.222 8.47 0.00 0.00 3.97
1626 6226 1.002794 TCTCCTCCCCCGATTCCCTA 61.003 60.000 0.00 0.00 0.00 3.53
1630 6230 1.424638 TTCATCTCCTCCCCCGATTC 58.575 55.000 0.00 0.00 0.00 2.52
1634 6234 0.179000 CTGTTTCATCTCCTCCCCCG 59.821 60.000 0.00 0.00 0.00 5.73
1635 6235 1.584724 TCTGTTTCATCTCCTCCCCC 58.415 55.000 0.00 0.00 0.00 5.40
1698 6651 6.976934 ACCAAAATAGGTGAACATTCAGTT 57.023 33.333 0.00 0.00 41.30 3.16
1728 6681 1.965643 ACAAGCACACATGAAGGCATT 59.034 42.857 0.00 0.00 30.68 3.56
1761 6714 2.388121 CAAAGCGCTTCACCTTTTCAG 58.612 47.619 25.24 0.00 0.00 3.02
1762 6715 1.066908 CCAAAGCGCTTCACCTTTTCA 59.933 47.619 25.24 0.00 0.00 2.69
1783 6737 3.493350 CGCAAAGTATGGAGGTGCTCTAT 60.493 47.826 0.00 0.00 35.85 1.98
1904 6864 3.728076 TCGCCATCTTAGTATGGTCAC 57.272 47.619 4.89 0.00 46.93 3.67
1964 6927 1.340600 GGCATACCCACCTTGTAGCAA 60.341 52.381 0.00 0.00 0.00 3.91
1968 6931 0.985760 AACGGCATACCCACCTTGTA 59.014 50.000 0.00 0.00 0.00 2.41
1980 6943 0.961019 ACACAATTCAGCAACGGCAT 59.039 45.000 0.00 0.00 44.61 4.40
2016 6979 5.688621 CCATACACACAATTCAGCAATATGC 59.311 40.000 0.00 0.00 45.46 3.14
2017 6980 6.210796 CCCATACACACAATTCAGCAATATG 58.789 40.000 0.00 0.00 0.00 1.78
2018 6981 5.302568 CCCCATACACACAATTCAGCAATAT 59.697 40.000 0.00 0.00 0.00 1.28
2019 6982 4.644234 CCCCATACACACAATTCAGCAATA 59.356 41.667 0.00 0.00 0.00 1.90
2020 6983 3.448301 CCCCATACACACAATTCAGCAAT 59.552 43.478 0.00 0.00 0.00 3.56
2076 7039 2.794350 CCACAAGTCAACGCCAAAATTC 59.206 45.455 0.00 0.00 0.00 2.17
2101 7064 2.234168 TCATTGGGTCGAAACGATACCA 59.766 45.455 13.38 13.38 41.39 3.25
2112 7083 1.595382 GGCTCCGATCATTGGGTCG 60.595 63.158 0.00 5.69 37.58 4.79
2138 7115 3.347958 TTGAACACAGCGACCAATTTC 57.652 42.857 0.00 0.00 0.00 2.17
2149 7129 1.472082 TGGGCGCATAATTGAACACAG 59.528 47.619 10.83 0.00 0.00 3.66
2204 7184 1.837439 AGGGACGTGCCAATATTCTCA 59.163 47.619 28.90 0.00 38.95 3.27
2220 7200 1.218047 CGCCTCGTCAAATCAGGGA 59.782 57.895 0.00 0.00 0.00 4.20
2252 7232 0.912487 AGACACCGGGGCTATTTGGA 60.912 55.000 1.73 0.00 0.00 3.53
2258 7238 4.000620 TGGGAGACACCGGGGCTA 62.001 66.667 1.73 0.00 40.11 3.93
2280 7260 6.965607 TGCATCTCATACCATGGATAATGAT 58.034 36.000 21.47 12.86 38.72 2.45
2301 7281 1.132834 GATGACGGCACATTCAATGCA 59.867 47.619 0.00 0.00 45.27 3.96
2312 7292 1.885887 CCAAGAAAAAGGATGACGGCA 59.114 47.619 0.00 0.00 0.00 5.69
2314 7294 3.674997 TCTCCAAGAAAAAGGATGACGG 58.325 45.455 0.00 0.00 32.53 4.79
2327 7307 3.099905 CCACTCCACACTATCTCCAAGA 58.900 50.000 0.00 0.00 0.00 3.02
2331 7311 2.457598 TGACCACTCCACACTATCTCC 58.542 52.381 0.00 0.00 0.00 3.71
2343 7325 2.900546 TCCTCCTCTTCTTTGACCACTC 59.099 50.000 0.00 0.00 0.00 3.51
2367 7349 5.650266 ACAAACACCAACATGTTACTCTTGA 59.350 36.000 11.53 0.00 42.01 3.02
2369 7351 6.826741 ACTACAAACACCAACATGTTACTCTT 59.173 34.615 11.53 0.00 42.01 2.85
2382 7364 1.870402 CACGCATCACTACAAACACCA 59.130 47.619 0.00 0.00 0.00 4.17
2401 7383 7.324856 GCAATACAAAATATGTCACGTTCAACA 59.675 33.333 0.00 0.00 42.70 3.33
2402 7384 7.537306 AGCAATACAAAATATGTCACGTTCAAC 59.463 33.333 0.00 0.00 42.70 3.18
2403 7385 7.589395 AGCAATACAAAATATGTCACGTTCAA 58.411 30.769 0.00 0.00 42.70 2.69
2404 7386 7.139896 AGCAATACAAAATATGTCACGTTCA 57.860 32.000 0.00 0.00 42.70 3.18
2405 7387 9.716507 AATAGCAATACAAAATATGTCACGTTC 57.283 29.630 0.00 0.00 42.70 3.95
2406 7388 9.716507 GAATAGCAATACAAAATATGTCACGTT 57.283 29.630 0.00 0.00 42.70 3.99
2407 7389 8.342634 GGAATAGCAATACAAAATATGTCACGT 58.657 33.333 0.00 0.00 42.70 4.49
2408 7390 8.559536 AGGAATAGCAATACAAAATATGTCACG 58.440 33.333 0.00 0.00 42.70 4.35
2416 7398 9.209175 GAGACGATAGGAATAGCAATACAAAAT 57.791 33.333 0.00 0.00 43.77 1.82
2417 7399 8.421784 AGAGACGATAGGAATAGCAATACAAAA 58.578 33.333 0.00 0.00 43.77 2.44
2418 7400 7.952671 AGAGACGATAGGAATAGCAATACAAA 58.047 34.615 0.00 0.00 43.77 2.83
2419 7401 7.526142 AGAGACGATAGGAATAGCAATACAA 57.474 36.000 0.00 0.00 43.77 2.41
2420 7402 7.148222 GCTAGAGACGATAGGAATAGCAATACA 60.148 40.741 0.00 0.00 43.77 2.29
2421 7403 7.190871 GCTAGAGACGATAGGAATAGCAATAC 58.809 42.308 0.00 0.00 43.77 1.89
2422 7404 6.319152 GGCTAGAGACGATAGGAATAGCAATA 59.681 42.308 0.00 0.00 38.72 1.90
2423 7405 5.126384 GGCTAGAGACGATAGGAATAGCAAT 59.874 44.000 0.00 0.00 38.72 3.56
2424 7406 4.459685 GGCTAGAGACGATAGGAATAGCAA 59.540 45.833 0.00 0.00 38.72 3.91
2425 7407 4.011023 GGCTAGAGACGATAGGAATAGCA 58.989 47.826 0.00 0.00 38.72 3.49
2426 7408 4.266714 AGGCTAGAGACGATAGGAATAGC 58.733 47.826 0.00 0.00 43.77 2.97
2427 7409 5.708230 ACAAGGCTAGAGACGATAGGAATAG 59.292 44.000 0.00 0.00 43.77 1.73
2428 7410 5.632118 ACAAGGCTAGAGACGATAGGAATA 58.368 41.667 0.00 0.00 43.77 1.75
2429 7411 4.475345 ACAAGGCTAGAGACGATAGGAAT 58.525 43.478 0.00 0.00 43.77 3.01
2430 7412 3.899726 ACAAGGCTAGAGACGATAGGAA 58.100 45.455 0.00 0.00 43.77 3.36
2431 7413 3.579534 ACAAGGCTAGAGACGATAGGA 57.420 47.619 0.00 0.00 43.77 2.94
2432 7414 6.174760 ACTATACAAGGCTAGAGACGATAGG 58.825 44.000 0.00 0.00 43.77 2.57
2433 7415 7.388224 TCAACTATACAAGGCTAGAGACGATAG 59.612 40.741 0.00 0.00 46.19 2.08
2434 7416 7.172875 GTCAACTATACAAGGCTAGAGACGATA 59.827 40.741 0.00 0.00 0.00 2.92
2435 7417 6.016943 GTCAACTATACAAGGCTAGAGACGAT 60.017 42.308 0.00 0.00 0.00 3.73
2436 7418 5.296283 GTCAACTATACAAGGCTAGAGACGA 59.704 44.000 0.00 0.00 0.00 4.20
2437 7419 5.297278 AGTCAACTATACAAGGCTAGAGACG 59.703 44.000 0.00 0.00 33.25 4.18
2438 7420 6.702716 AGTCAACTATACAAGGCTAGAGAC 57.297 41.667 0.00 0.00 0.00 3.36
2439 7421 7.120051 AGAAGTCAACTATACAAGGCTAGAGA 58.880 38.462 0.00 0.00 0.00 3.10
2440 7422 7.341445 AGAAGTCAACTATACAAGGCTAGAG 57.659 40.000 0.00 0.00 0.00 2.43
2441 7423 8.272889 TCTAGAAGTCAACTATACAAGGCTAGA 58.727 37.037 0.00 0.00 0.00 2.43
2442 7424 8.453238 TCTAGAAGTCAACTATACAAGGCTAG 57.547 38.462 0.00 0.00 0.00 3.42
2443 7425 7.502895 CCTCTAGAAGTCAACTATACAAGGCTA 59.497 40.741 0.00 0.00 0.00 3.93
2444 7426 6.322712 CCTCTAGAAGTCAACTATACAAGGCT 59.677 42.308 0.00 0.00 0.00 4.58
2445 7427 6.097129 ACCTCTAGAAGTCAACTATACAAGGC 59.903 42.308 0.00 0.00 0.00 4.35
2446 7428 7.648039 ACCTCTAGAAGTCAACTATACAAGG 57.352 40.000 0.00 0.00 0.00 3.61
2448 7430 9.132923 CCATACCTCTAGAAGTCAACTATACAA 57.867 37.037 0.00 0.00 0.00 2.41
2449 7431 8.280084 ACCATACCTCTAGAAGTCAACTATACA 58.720 37.037 0.00 0.00 0.00 2.29
2450 7432 8.694581 ACCATACCTCTAGAAGTCAACTATAC 57.305 38.462 0.00 0.00 0.00 1.47
2452 7434 7.945664 CCTACCATACCTCTAGAAGTCAACTAT 59.054 40.741 0.00 0.00 0.00 2.12
2453 7435 7.128418 TCCTACCATACCTCTAGAAGTCAACTA 59.872 40.741 0.00 0.00 0.00 2.24
2454 7436 6.068971 TCCTACCATACCTCTAGAAGTCAACT 60.069 42.308 0.00 0.00 0.00 3.16
2455 7437 6.127793 TCCTACCATACCTCTAGAAGTCAAC 58.872 44.000 0.00 0.00 0.00 3.18
2456 7438 6.337185 TCCTACCATACCTCTAGAAGTCAA 57.663 41.667 0.00 0.00 0.00 3.18
2457 7439 5.988865 TCCTACCATACCTCTAGAAGTCA 57.011 43.478 0.00 0.00 0.00 3.41
2458 7440 8.165397 ACTAATCCTACCATACCTCTAGAAGTC 58.835 40.741 0.00 0.00 0.00 3.01
2459 7441 8.059565 ACTAATCCTACCATACCTCTAGAAGT 57.940 38.462 0.00 0.00 0.00 3.01
2460 7442 8.943594 AACTAATCCTACCATACCTCTAGAAG 57.056 38.462 0.00 0.00 0.00 2.85
2461 7443 9.364653 GAAACTAATCCTACCATACCTCTAGAA 57.635 37.037 0.00 0.00 0.00 2.10
2462 7444 7.949006 GGAAACTAATCCTACCATACCTCTAGA 59.051 40.741 0.00 0.00 36.50 2.43
2463 7445 8.124808 GGAAACTAATCCTACCATACCTCTAG 57.875 42.308 0.00 0.00 36.50 2.43
2465 7447 6.997942 GGAAACTAATCCTACCATACCTCT 57.002 41.667 0.00 0.00 36.50 3.69
2477 7459 3.071479 TGCGTGACAAGGAAACTAATCC 58.929 45.455 0.00 0.00 42.68 3.01
2478 7460 4.742438 TTGCGTGACAAGGAAACTAATC 57.258 40.909 0.00 0.00 42.68 1.75
2501 7483 9.555727 GTTGGTTACAATATATACACAGGATGT 57.444 33.333 0.00 0.00 45.54 3.06
2502 7484 8.999431 GGTTGGTTACAATATATACACAGGATG 58.001 37.037 0.00 0.00 39.95 3.51
2503 7485 8.161425 GGGTTGGTTACAATATATACACAGGAT 58.839 37.037 0.00 0.00 39.13 3.24
2504 7486 7.420446 GGGGTTGGTTACAATATATACACAGGA 60.420 40.741 0.00 0.00 39.13 3.86
2505 7487 6.713450 GGGGTTGGTTACAATATATACACAGG 59.287 42.308 0.00 0.00 39.13 4.00
2506 7488 7.284074 TGGGGTTGGTTACAATATATACACAG 58.716 38.462 0.00 0.00 39.13 3.66
2507 7489 7.209340 TGGGGTTGGTTACAATATATACACA 57.791 36.000 0.00 0.00 39.13 3.72
2508 7490 9.444600 CTATGGGGTTGGTTACAATATATACAC 57.555 37.037 0.00 0.00 39.13 2.90
2509 7491 9.395068 TCTATGGGGTTGGTTACAATATATACA 57.605 33.333 0.00 0.00 39.13 2.29
2514 7496 8.729047 TGTATTCTATGGGGTTGGTTACAATAT 58.271 33.333 0.00 0.00 39.13 1.28
2515 7497 8.103660 TGTATTCTATGGGGTTGGTTACAATA 57.896 34.615 0.00 0.00 39.13 1.90
2516 7498 6.975949 TGTATTCTATGGGGTTGGTTACAAT 58.024 36.000 0.00 0.00 39.13 2.71
2517 7499 6.390048 TGTATTCTATGGGGTTGGTTACAA 57.610 37.500 0.00 0.00 0.00 2.41
2518 7500 6.390048 TTGTATTCTATGGGGTTGGTTACA 57.610 37.500 0.00 0.00 0.00 2.41
2519 7501 8.983702 TTATTGTATTCTATGGGGTTGGTTAC 57.016 34.615 0.00 0.00 0.00 2.50
2520 7502 8.783903 ACTTATTGTATTCTATGGGGTTGGTTA 58.216 33.333 0.00 0.00 0.00 2.85
2521 7503 7.648770 ACTTATTGTATTCTATGGGGTTGGTT 58.351 34.615 0.00 0.00 0.00 3.67
2522 7504 7.220890 ACTTATTGTATTCTATGGGGTTGGT 57.779 36.000 0.00 0.00 0.00 3.67
2523 7505 7.470009 GCAACTTATTGTATTCTATGGGGTTGG 60.470 40.741 0.00 0.00 38.17 3.77
2524 7506 7.068103 TGCAACTTATTGTATTCTATGGGGTTG 59.932 37.037 0.00 0.00 38.17 3.77
2525 7507 7.122715 TGCAACTTATTGTATTCTATGGGGTT 58.877 34.615 0.00 0.00 38.17 4.11
2526 7508 6.668645 TGCAACTTATTGTATTCTATGGGGT 58.331 36.000 0.00 0.00 38.17 4.95
2527 7509 7.094205 GGATGCAACTTATTGTATTCTATGGGG 60.094 40.741 0.00 0.00 40.77 4.96
2528 7510 7.667219 AGGATGCAACTTATTGTATTCTATGGG 59.333 37.037 0.00 0.00 43.01 4.00
2529 7511 8.627208 AGGATGCAACTTATTGTATTCTATGG 57.373 34.615 0.00 0.00 43.01 2.74
2532 7514 9.764363 CTGTAGGATGCAACTTATTGTATTCTA 57.236 33.333 0.00 2.93 43.01 2.10
2533 7515 8.267894 ACTGTAGGATGCAACTTATTGTATTCT 58.732 33.333 4.60 4.60 45.69 2.40
2534 7516 8.438676 ACTGTAGGATGCAACTTATTGTATTC 57.561 34.615 0.00 0.00 40.77 1.75
2535 7517 8.807948 AACTGTAGGATGCAACTTATTGTATT 57.192 30.769 0.00 0.00 40.77 1.89
2536 7518 8.807948 AAACTGTAGGATGCAACTTATTGTAT 57.192 30.769 0.00 0.00 43.07 2.29
2537 7519 9.158233 GTAAACTGTAGGATGCAACTTATTGTA 57.842 33.333 0.00 0.00 38.17 2.41
2538 7520 7.120726 GGTAAACTGTAGGATGCAACTTATTGT 59.879 37.037 0.00 0.00 38.17 2.71
2539 7521 7.336931 AGGTAAACTGTAGGATGCAACTTATTG 59.663 37.037 0.00 0.00 38.99 1.90
2540 7522 7.402862 AGGTAAACTGTAGGATGCAACTTATT 58.597 34.615 0.00 0.00 0.00 1.40
2541 7523 6.958767 AGGTAAACTGTAGGATGCAACTTAT 58.041 36.000 0.00 0.00 0.00 1.73
2542 7524 6.368779 AGGTAAACTGTAGGATGCAACTTA 57.631 37.500 0.00 0.00 0.00 2.24
2543 7525 5.242795 AGGTAAACTGTAGGATGCAACTT 57.757 39.130 0.00 0.00 0.00 2.66
2544 7526 4.910458 AGGTAAACTGTAGGATGCAACT 57.090 40.909 0.00 0.00 0.00 3.16
2545 7527 5.935789 TGTAAGGTAAACTGTAGGATGCAAC 59.064 40.000 0.00 0.00 0.00 4.17
2546 7528 6.116711 TGTAAGGTAAACTGTAGGATGCAA 57.883 37.500 0.00 0.00 0.00 4.08
2547 7529 5.748670 TGTAAGGTAAACTGTAGGATGCA 57.251 39.130 0.00 0.00 0.00 3.96
2548 7530 7.247929 GATTGTAAGGTAAACTGTAGGATGC 57.752 40.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.