Multiple sequence alignment - TraesCS6D01G084400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G084400 chr6D 100.000 2744 0 0 1 2744 49272111 49274854 0.000000e+00 5068.0
1 TraesCS6D01G084400 chr6D 92.994 157 9 1 2587 2741 109733764 109733608 7.640000e-56 228.0
2 TraesCS6D01G084400 chr6A 94.691 2053 73 15 1 2036 65657245 65655212 0.000000e+00 3155.0
3 TraesCS6D01G084400 chr6A 92.250 400 26 5 2031 2426 65655183 65654785 1.850000e-156 562.0
4 TraesCS6D01G084400 chr6B 93.907 2035 72 16 5 2022 121791284 121789285 0.000000e+00 3024.0
5 TraesCS6D01G084400 chr6B 89.484 523 43 9 2044 2558 121788908 121788390 0.000000e+00 651.0
6 TraesCS6D01G084400 chr6B 93.421 152 10 0 2593 2744 652642707 652642556 2.750000e-55 226.0
7 TraesCS6D01G084400 chr7D 93.631 157 10 0 2588 2744 44670286 44670130 4.570000e-58 235.0
8 TraesCS6D01G084400 chr7D 92.994 157 8 2 2588 2741 254710795 254710639 2.750000e-55 226.0
9 TraesCS6D01G084400 chr7D 92.357 157 12 0 2588 2744 213566863 213567019 9.890000e-55 224.0
10 TraesCS6D01G084400 chr3B 92.994 157 11 0 2588 2744 103746761 103746917 2.130000e-56 230.0
11 TraesCS6D01G084400 chr5D 92.949 156 9 1 2588 2741 303621317 303621162 2.750000e-55 226.0
12 TraesCS6D01G084400 chr4D 94.558 147 7 1 2588 2733 321069766 321069912 2.750000e-55 226.0
13 TraesCS6D01G084400 chr3D 92.357 157 12 0 2588 2744 14382750 14382906 9.890000e-55 224.0
14 TraesCS6D01G084400 chr4A 76.389 144 19 13 2246 2384 155601936 155602069 2.280000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G084400 chr6D 49272111 49274854 2743 False 5068.0 5068 100.0000 1 2744 1 chr6D.!!$F1 2743
1 TraesCS6D01G084400 chr6A 65654785 65657245 2460 True 1858.5 3155 93.4705 1 2426 2 chr6A.!!$R1 2425
2 TraesCS6D01G084400 chr6B 121788390 121791284 2894 True 1837.5 3024 91.6955 5 2558 2 chr6B.!!$R2 2553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 531 1.036707 TTTTGTGGTAGGCCTTGTGC 58.963 50.0 12.58 0.0 40.16 4.57 F
1497 1507 0.036577 ACACTGCAGATGAGCTGGTC 60.037 55.0 23.35 0.0 45.03 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 1576 0.310543 CGCTCTCATCCTCGGAGAAG 59.689 60.0 6.58 0.0 40.64 2.85 R
2537 2930 0.909610 TGGATGGTCCGAGGAAGCTT 60.910 55.0 0.00 0.0 40.17 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.652795 CCGTCGCGGTTTTATTTGTTT 58.347 42.857 6.13 0.00 42.73 2.83
135 136 3.429410 GGTTGCTTCAGAGTTTGCAGTTT 60.429 43.478 0.00 0.00 36.75 2.66
224 225 5.728898 GCAGTCCTTCGCTTGATCTTATTTG 60.729 44.000 0.00 0.00 0.00 2.32
265 266 7.500720 TGGCATATTGTTTGTCAGATATGAG 57.499 36.000 0.00 0.00 34.00 2.90
403 407 7.383029 CAGTACAATTGTCAATGACAGCAAATT 59.617 33.333 15.85 10.24 43.69 1.82
521 525 2.215942 ACCAGATTTTGTGGTAGGCC 57.784 50.000 0.00 0.00 46.96 5.19
522 526 1.710809 ACCAGATTTTGTGGTAGGCCT 59.289 47.619 11.78 11.78 46.96 5.19
523 527 2.110011 ACCAGATTTTGTGGTAGGCCTT 59.890 45.455 12.58 0.00 46.96 4.35
524 528 2.493278 CCAGATTTTGTGGTAGGCCTTG 59.507 50.000 12.58 0.00 35.27 3.61
525 529 3.157087 CAGATTTTGTGGTAGGCCTTGT 58.843 45.455 12.58 0.00 35.27 3.16
526 530 3.057315 CAGATTTTGTGGTAGGCCTTGTG 60.057 47.826 12.58 0.00 35.27 3.33
527 531 1.036707 TTTTGTGGTAGGCCTTGTGC 58.963 50.000 12.58 0.00 40.16 4.57
672 676 8.981659 TGATTCTTTATCTTGATCTCAGGTGTA 58.018 33.333 0.00 0.00 34.17 2.90
743 750 3.750130 ACTTGATCACTAGTTTGCTGCTG 59.250 43.478 0.00 0.00 0.00 4.41
792 799 8.712285 TTAATCACAGAAATAACTACTTCCCG 57.288 34.615 0.00 0.00 0.00 5.14
862 869 9.766277 CTTCATCTTTTACACTAAGCTTTCATC 57.234 33.333 3.20 0.00 0.00 2.92
867 874 9.155975 TCTTTTACACTAAGCTTTCATCATCTC 57.844 33.333 3.20 0.00 0.00 2.75
924 931 4.100189 GCCTCTTCTCTAGCCTTATGAACA 59.900 45.833 0.00 0.00 0.00 3.18
947 954 7.059156 ACAAATTTCCCCATTGTCAATTCAAA 58.941 30.769 0.00 0.00 32.02 2.69
1078 1085 0.319728 TGAAGAGCAGGCTGTGACTC 59.680 55.000 17.16 13.81 32.49 3.36
1122 1129 7.619050 TGCCTGCTATTTTGGAATCAATTAAA 58.381 30.769 0.00 0.00 32.28 1.52
1259 1266 2.795329 TGATTCCCTTCAAGAGCCAAC 58.205 47.619 0.00 0.00 0.00 3.77
1340 1347 1.599047 CGGAATCCCACACTCTGCT 59.401 57.895 0.00 0.00 0.00 4.24
1344 1351 2.079925 GAATCCCACACTCTGCTTGTC 58.920 52.381 0.00 0.00 0.00 3.18
1497 1507 0.036577 ACACTGCAGATGAGCTGGTC 60.037 55.000 23.35 0.00 45.03 4.02
1566 1576 2.418334 GGTTTGGGATCTAGACGTGTCC 60.418 54.545 0.00 0.00 0.00 4.02
1720 1730 2.038837 GTGGCGGGCTTGAGTAACC 61.039 63.158 2.38 0.00 0.00 2.85
1950 1970 6.517605 AGACTTCAGACTTAGGTTGACTTTC 58.482 40.000 0.00 0.00 0.00 2.62
1954 1974 5.470368 TCAGACTTAGGTTGACTTTCGATG 58.530 41.667 0.00 0.00 0.00 3.84
1991 2016 4.074970 GTCTGGACATCCTTGAAACATGT 58.925 43.478 0.00 0.00 36.82 3.21
2010 2035 5.296780 ACATGTCGTTTGAGTTCAATTCAGT 59.703 36.000 0.00 0.00 35.55 3.41
2023 2048 6.208204 AGTTCAATTCAGTCAGATTTTGGAGG 59.792 38.462 0.00 0.00 0.00 4.30
2108 2497 4.060205 CAAGGCCCATTAATATTGCTTGC 58.940 43.478 0.00 0.00 0.00 4.01
2119 2508 8.598075 CATTAATATTGCTTGCCTGTTCTTTTC 58.402 33.333 0.00 0.00 0.00 2.29
2164 2553 0.600557 CTTGACTGCAGACCTCTCGT 59.399 55.000 23.35 0.00 0.00 4.18
2173 2562 1.338337 CAGACCTCTCGTGTTGACTGT 59.662 52.381 0.00 0.00 0.00 3.55
2244 2633 6.321945 TCATGGATATGAAAACAGTTCATGGG 59.678 38.462 10.99 0.00 40.26 4.00
2248 2637 7.035612 GGATATGAAAACAGTTCATGGGTTTC 58.964 38.462 10.99 3.94 39.30 2.78
2254 2643 7.609532 TGAAAACAGTTCATGGGTTTCAAAAAT 59.390 29.630 9.58 0.00 40.87 1.82
2265 2654 7.928307 TGGGTTTCAAAAATTGTTCATGAAA 57.072 28.000 10.35 0.00 37.59 2.69
2408 2800 8.073467 AGGACCTTCACAATTTTGAAAAAGTA 57.927 30.769 8.31 0.00 35.07 2.24
2409 2801 8.704668 AGGACCTTCACAATTTTGAAAAAGTAT 58.295 29.630 8.31 0.00 35.07 2.12
2558 2958 0.035439 GCTTCCTCGGACCATCCAAA 60.035 55.000 0.00 0.00 35.91 3.28
2559 2959 1.408822 GCTTCCTCGGACCATCCAAAT 60.409 52.381 0.00 0.00 35.91 2.32
2560 2960 2.945890 GCTTCCTCGGACCATCCAAATT 60.946 50.000 0.00 0.00 35.91 1.82
2561 2961 2.710096 TCCTCGGACCATCCAAATTC 57.290 50.000 0.00 0.00 35.91 2.17
2562 2962 1.211949 TCCTCGGACCATCCAAATTCC 59.788 52.381 0.00 0.00 35.91 3.01
2563 2963 1.064758 CCTCGGACCATCCAAATTCCA 60.065 52.381 0.00 0.00 35.91 3.53
2564 2964 2.620367 CCTCGGACCATCCAAATTCCAA 60.620 50.000 0.00 0.00 35.91 3.53
2565 2965 3.088532 CTCGGACCATCCAAATTCCAAA 58.911 45.455 0.00 0.00 35.91 3.28
2566 2966 3.501349 TCGGACCATCCAAATTCCAAAA 58.499 40.909 0.00 0.00 35.91 2.44
2567 2967 3.509575 TCGGACCATCCAAATTCCAAAAG 59.490 43.478 0.00 0.00 35.91 2.27
2568 2968 3.368323 CGGACCATCCAAATTCCAAAAGG 60.368 47.826 0.00 0.00 35.91 3.11
2569 2969 3.837731 GGACCATCCAAATTCCAAAAGGA 59.162 43.478 0.00 0.00 36.28 3.36
2570 2970 4.285775 GGACCATCCAAATTCCAAAAGGAA 59.714 41.667 0.00 0.00 36.28 3.36
2571 2971 5.482006 GACCATCCAAATTCCAAAAGGAAG 58.518 41.667 3.15 0.00 31.17 3.46
2572 2972 4.256110 CCATCCAAATTCCAAAAGGAAGC 58.744 43.478 3.15 0.00 31.17 3.86
2573 2973 4.256110 CATCCAAATTCCAAAAGGAAGCC 58.744 43.478 3.15 0.00 31.17 4.35
2574 2974 2.298729 TCCAAATTCCAAAAGGAAGCCG 59.701 45.455 3.15 0.00 0.00 5.52
2575 2975 2.298729 CCAAATTCCAAAAGGAAGCCGA 59.701 45.455 3.15 0.00 0.00 5.54
2576 2976 3.244044 CCAAATTCCAAAAGGAAGCCGAA 60.244 43.478 3.15 0.00 0.00 4.30
2577 2977 4.563374 CCAAATTCCAAAAGGAAGCCGAAT 60.563 41.667 3.15 0.00 0.00 3.34
2578 2978 3.874392 ATTCCAAAAGGAAGCCGAATG 57.126 42.857 3.15 0.00 0.00 2.67
2579 2979 1.544724 TCCAAAAGGAAGCCGAATGG 58.455 50.000 0.00 0.00 38.77 3.16
2592 2992 3.131709 CCGAATGGCCATTCTCATAGT 57.868 47.619 41.30 18.10 43.71 2.12
2593 2993 2.810274 CCGAATGGCCATTCTCATAGTG 59.190 50.000 41.30 28.79 43.71 2.74
2594 2994 2.810274 CGAATGGCCATTCTCATAGTGG 59.190 50.000 41.30 26.38 43.71 4.00
2595 2995 3.745480 CGAATGGCCATTCTCATAGTGGT 60.745 47.826 41.30 16.18 43.71 4.16
2596 2996 2.715749 TGGCCATTCTCATAGTGGTG 57.284 50.000 0.00 0.00 35.44 4.17
2597 2997 1.212688 TGGCCATTCTCATAGTGGTGG 59.787 52.381 0.00 0.00 35.44 4.61
2598 2998 1.212935 GGCCATTCTCATAGTGGTGGT 59.787 52.381 0.00 0.00 35.44 4.16
2599 2999 2.438021 GGCCATTCTCATAGTGGTGGTA 59.562 50.000 0.00 0.00 35.44 3.25
2600 3000 3.073062 GGCCATTCTCATAGTGGTGGTAT 59.927 47.826 0.00 0.00 35.44 2.73
2601 3001 4.319177 GCCATTCTCATAGTGGTGGTATC 58.681 47.826 0.00 0.00 35.44 2.24
2602 3002 4.202357 GCCATTCTCATAGTGGTGGTATCA 60.202 45.833 0.00 0.00 35.44 2.15
2603 3003 5.513788 GCCATTCTCATAGTGGTGGTATCAT 60.514 44.000 0.00 0.00 35.44 2.45
2604 3004 6.295859 GCCATTCTCATAGTGGTGGTATCATA 60.296 42.308 0.00 0.00 35.44 2.15
2605 3005 7.326454 CCATTCTCATAGTGGTGGTATCATAG 58.674 42.308 0.00 0.00 0.00 2.23
2606 3006 5.984695 TCTCATAGTGGTGGTATCATAGC 57.015 43.478 0.00 0.00 0.00 2.97
2607 3007 5.645201 TCTCATAGTGGTGGTATCATAGCT 58.355 41.667 0.00 0.00 0.00 3.32
2608 3008 5.478332 TCTCATAGTGGTGGTATCATAGCTG 59.522 44.000 0.00 0.00 0.00 4.24
2609 3009 4.528206 TCATAGTGGTGGTATCATAGCTGG 59.472 45.833 0.00 0.00 0.00 4.85
2610 3010 2.764269 AGTGGTGGTATCATAGCTGGT 58.236 47.619 0.00 0.00 0.00 4.00
2611 3011 3.923648 AGTGGTGGTATCATAGCTGGTA 58.076 45.455 0.00 0.00 0.00 3.25
2612 3012 4.493618 AGTGGTGGTATCATAGCTGGTAT 58.506 43.478 0.00 0.00 0.00 2.73
2613 3013 4.528596 AGTGGTGGTATCATAGCTGGTATC 59.471 45.833 0.00 0.00 0.00 2.24
2614 3014 4.283467 GTGGTGGTATCATAGCTGGTATCA 59.717 45.833 0.00 0.00 26.15 2.15
2615 3015 5.046304 GTGGTGGTATCATAGCTGGTATCAT 60.046 44.000 0.00 0.00 31.83 2.45
2616 3016 5.046376 TGGTGGTATCATAGCTGGTATCATG 60.046 44.000 0.00 0.00 31.83 3.07
2617 3017 4.872691 GTGGTATCATAGCTGGTATCATGC 59.127 45.833 0.00 0.00 31.83 4.06
2618 3018 4.531732 TGGTATCATAGCTGGTATCATGCA 59.468 41.667 0.00 0.00 23.55 3.96
2619 3019 4.872691 GGTATCATAGCTGGTATCATGCAC 59.127 45.833 0.00 0.00 0.00 4.57
2620 3020 4.904895 ATCATAGCTGGTATCATGCACT 57.095 40.909 0.00 0.00 0.00 4.40
2621 3021 4.263018 TCATAGCTGGTATCATGCACTC 57.737 45.455 0.00 0.00 0.00 3.51
2622 3022 2.800881 TAGCTGGTATCATGCACTCG 57.199 50.000 0.00 0.00 0.00 4.18
2623 3023 1.114627 AGCTGGTATCATGCACTCGA 58.885 50.000 0.00 0.00 0.00 4.04
2624 3024 1.068281 AGCTGGTATCATGCACTCGAG 59.932 52.381 11.84 11.84 0.00 4.04
2625 3025 1.067669 GCTGGTATCATGCACTCGAGA 59.932 52.381 21.68 0.00 0.00 4.04
2626 3026 2.481969 GCTGGTATCATGCACTCGAGAA 60.482 50.000 21.68 4.44 0.00 2.87
2627 3027 3.801638 GCTGGTATCATGCACTCGAGAAT 60.802 47.826 21.68 6.82 0.00 2.40
2628 3028 4.559502 GCTGGTATCATGCACTCGAGAATA 60.560 45.833 21.68 4.51 0.00 1.75
2629 3029 5.126396 TGGTATCATGCACTCGAGAATAG 57.874 43.478 21.68 6.99 0.00 1.73
2630 3030 3.923461 GGTATCATGCACTCGAGAATAGC 59.077 47.826 21.68 16.81 0.00 2.97
2631 3031 3.740631 ATCATGCACTCGAGAATAGCA 57.259 42.857 21.68 21.56 39.79 3.49
2632 3032 3.525268 TCATGCACTCGAGAATAGCAA 57.475 42.857 21.68 6.80 38.85 3.91
2633 3033 3.860641 TCATGCACTCGAGAATAGCAAA 58.139 40.909 21.68 12.35 38.85 3.68
2634 3034 3.618594 TCATGCACTCGAGAATAGCAAAC 59.381 43.478 21.68 0.00 38.85 2.93
2635 3035 3.038788 TGCACTCGAGAATAGCAAACA 57.961 42.857 21.68 0.54 31.42 2.83
2636 3036 3.599343 TGCACTCGAGAATAGCAAACAT 58.401 40.909 21.68 0.00 31.42 2.71
2637 3037 3.371898 TGCACTCGAGAATAGCAAACATG 59.628 43.478 21.68 3.00 31.42 3.21
2638 3038 3.618594 GCACTCGAGAATAGCAAACATGA 59.381 43.478 21.68 0.00 0.00 3.07
2639 3039 4.272018 GCACTCGAGAATAGCAAACATGAT 59.728 41.667 21.68 0.00 0.00 2.45
2640 3040 5.735324 CACTCGAGAATAGCAAACATGATG 58.265 41.667 21.68 0.00 0.00 3.07
2641 3041 5.521372 CACTCGAGAATAGCAAACATGATGA 59.479 40.000 21.68 0.00 0.00 2.92
2642 3042 6.202379 CACTCGAGAATAGCAAACATGATGAT 59.798 38.462 21.68 0.00 0.00 2.45
2643 3043 6.202379 ACTCGAGAATAGCAAACATGATGATG 59.798 38.462 21.68 0.00 35.49 3.07
2644 3044 6.051074 TCGAGAATAGCAAACATGATGATGT 58.949 36.000 0.00 0.00 45.24 3.06
2645 3045 6.018507 TCGAGAATAGCAAACATGATGATGTG 60.019 38.462 0.00 0.00 42.30 3.21
2646 3046 6.387041 AGAATAGCAAACATGATGATGTGG 57.613 37.500 0.00 0.00 42.30 4.17
2647 3047 2.953466 AGCAAACATGATGATGTGGC 57.047 45.000 12.31 12.31 42.30 5.01
2648 3048 2.172679 AGCAAACATGATGATGTGGCA 58.827 42.857 19.26 0.00 42.30 4.92
2649 3049 2.563620 AGCAAACATGATGATGTGGCAA 59.436 40.909 19.26 0.00 42.30 4.52
2650 3050 3.007074 AGCAAACATGATGATGTGGCAAA 59.993 39.130 19.26 0.00 42.30 3.68
2651 3051 3.369756 GCAAACATGATGATGTGGCAAAG 59.630 43.478 14.45 0.00 42.30 2.77
2652 3052 4.811908 CAAACATGATGATGTGGCAAAGA 58.188 39.130 0.00 0.00 42.30 2.52
2653 3053 5.231702 CAAACATGATGATGTGGCAAAGAA 58.768 37.500 0.00 0.00 42.30 2.52
2654 3054 5.670792 AACATGATGATGTGGCAAAGAAT 57.329 34.783 0.00 0.00 42.30 2.40
2655 3055 5.670792 ACATGATGATGTGGCAAAGAATT 57.329 34.783 0.00 0.00 41.52 2.17
2656 3056 6.778834 ACATGATGATGTGGCAAAGAATTA 57.221 33.333 0.00 0.00 41.52 1.40
2657 3057 7.172868 ACATGATGATGTGGCAAAGAATTAA 57.827 32.000 0.00 0.00 41.52 1.40
2658 3058 7.613585 ACATGATGATGTGGCAAAGAATTAAA 58.386 30.769 0.00 0.00 41.52 1.52
2659 3059 7.762615 ACATGATGATGTGGCAAAGAATTAAAG 59.237 33.333 0.00 0.00 41.52 1.85
2660 3060 7.465353 TGATGATGTGGCAAAGAATTAAAGA 57.535 32.000 0.00 0.00 0.00 2.52
2661 3061 7.894708 TGATGATGTGGCAAAGAATTAAAGAA 58.105 30.769 0.00 0.00 0.00 2.52
2662 3062 8.030692 TGATGATGTGGCAAAGAATTAAAGAAG 58.969 33.333 0.00 0.00 0.00 2.85
2663 3063 7.523293 TGATGTGGCAAAGAATTAAAGAAGA 57.477 32.000 0.00 0.00 0.00 2.87
2664 3064 7.596494 TGATGTGGCAAAGAATTAAAGAAGAG 58.404 34.615 0.00 0.00 0.00 2.85
2665 3065 7.448161 TGATGTGGCAAAGAATTAAAGAAGAGA 59.552 33.333 0.00 0.00 0.00 3.10
2666 3066 7.206981 TGTGGCAAAGAATTAAAGAAGAGAG 57.793 36.000 0.00 0.00 0.00 3.20
2667 3067 6.998074 TGTGGCAAAGAATTAAAGAAGAGAGA 59.002 34.615 0.00 0.00 0.00 3.10
2668 3068 7.173907 TGTGGCAAAGAATTAAAGAAGAGAGAG 59.826 37.037 0.00 0.00 0.00 3.20
2669 3069 6.656693 TGGCAAAGAATTAAAGAAGAGAGAGG 59.343 38.462 0.00 0.00 0.00 3.69
2670 3070 6.881602 GGCAAAGAATTAAAGAAGAGAGAGGA 59.118 38.462 0.00 0.00 0.00 3.71
2671 3071 7.555914 GGCAAAGAATTAAAGAAGAGAGAGGAT 59.444 37.037 0.00 0.00 0.00 3.24
2672 3072 8.955388 GCAAAGAATTAAAGAAGAGAGAGGATT 58.045 33.333 0.00 0.00 0.00 3.01
2681 3081 8.887264 AAAGAAGAGAGAGGATTAGAGTAACA 57.113 34.615 0.00 0.00 0.00 2.41
2682 3082 9.487442 AAAGAAGAGAGAGGATTAGAGTAACAT 57.513 33.333 0.00 0.00 0.00 2.71
2684 3084 9.793259 AGAAGAGAGAGGATTAGAGTAACATAG 57.207 37.037 0.00 0.00 0.00 2.23
2685 3085 8.934023 AAGAGAGAGGATTAGAGTAACATAGG 57.066 38.462 0.00 0.00 0.00 2.57
2686 3086 8.052621 AGAGAGAGGATTAGAGTAACATAGGT 57.947 38.462 0.00 0.00 0.00 3.08
2687 3087 9.173231 AGAGAGAGGATTAGAGTAACATAGGTA 57.827 37.037 0.00 0.00 0.00 3.08
2688 3088 9.444600 GAGAGAGGATTAGAGTAACATAGGTAG 57.555 40.741 0.00 0.00 0.00 3.18
2689 3089 9.173231 AGAGAGGATTAGAGTAACATAGGTAGA 57.827 37.037 0.00 0.00 0.00 2.59
2690 3090 9.969001 GAGAGGATTAGAGTAACATAGGTAGAT 57.031 37.037 0.00 0.00 0.00 1.98
2693 3093 9.669887 AGGATTAGAGTAACATAGGTAGATACG 57.330 37.037 0.00 0.00 0.00 3.06
2694 3094 8.891720 GGATTAGAGTAACATAGGTAGATACGG 58.108 40.741 0.00 0.00 0.00 4.02
2695 3095 9.447157 GATTAGAGTAACATAGGTAGATACGGT 57.553 37.037 0.00 0.00 0.00 4.83
2699 3099 8.600668 AGAGTAACATAGGTAGATACGGTATCA 58.399 37.037 25.48 11.95 37.65 2.15
2700 3100 9.393512 GAGTAACATAGGTAGATACGGTATCAT 57.606 37.037 25.48 14.97 37.65 2.45
2701 3101 9.175312 AGTAACATAGGTAGATACGGTATCATG 57.825 37.037 25.48 20.89 37.65 3.07
2702 3102 8.954350 GTAACATAGGTAGATACGGTATCATGT 58.046 37.037 25.48 21.40 37.65 3.21
2703 3103 8.418597 AACATAGGTAGATACGGTATCATGTT 57.581 34.615 25.48 24.59 37.65 2.71
2704 3104 9.524496 AACATAGGTAGATACGGTATCATGTTA 57.476 33.333 26.11 16.60 36.17 2.41
2705 3105 9.524496 ACATAGGTAGATACGGTATCATGTTAA 57.476 33.333 25.48 10.10 37.65 2.01
2709 3109 7.817962 AGGTAGATACGGTATCATGTTAAATGC 59.182 37.037 25.48 9.28 37.65 3.56
2710 3110 7.817962 GGTAGATACGGTATCATGTTAAATGCT 59.182 37.037 25.48 7.03 37.65 3.79
2711 3111 9.850628 GTAGATACGGTATCATGTTAAATGCTA 57.149 33.333 25.48 6.19 37.65 3.49
2713 3113 9.371136 AGATACGGTATCATGTTAAATGCTATG 57.629 33.333 25.48 0.00 37.65 2.23
2714 3114 6.241207 ACGGTATCATGTTAAATGCTATGC 57.759 37.500 0.00 0.00 0.00 3.14
2715 3115 5.997746 ACGGTATCATGTTAAATGCTATGCT 59.002 36.000 0.00 0.00 0.00 3.79
2716 3116 7.158697 ACGGTATCATGTTAAATGCTATGCTA 58.841 34.615 0.00 0.00 0.00 3.49
2717 3117 7.117812 ACGGTATCATGTTAAATGCTATGCTAC 59.882 37.037 0.00 0.00 0.00 3.58
2718 3118 7.331934 CGGTATCATGTTAAATGCTATGCTACT 59.668 37.037 0.00 0.00 0.00 2.57
2719 3119 9.003658 GGTATCATGTTAAATGCTATGCTACTT 57.996 33.333 0.00 0.00 0.00 2.24
2722 3122 8.279970 TCATGTTAAATGCTATGCTACTTTGT 57.720 30.769 0.00 0.00 0.00 2.83
2723 3123 8.183536 TCATGTTAAATGCTATGCTACTTTGTG 58.816 33.333 0.00 0.00 0.00 3.33
2724 3124 7.447374 TGTTAAATGCTATGCTACTTTGTGT 57.553 32.000 0.00 0.00 0.00 3.72
2725 3125 7.526608 TGTTAAATGCTATGCTACTTTGTGTC 58.473 34.615 0.00 0.00 0.00 3.67
2726 3126 7.174080 TGTTAAATGCTATGCTACTTTGTGTCA 59.826 33.333 0.00 0.00 0.00 3.58
2727 3127 6.764308 AAATGCTATGCTACTTTGTGTCAT 57.236 33.333 0.00 0.00 0.00 3.06
2728 3128 5.746307 ATGCTATGCTACTTTGTGTCATG 57.254 39.130 0.00 0.00 0.00 3.07
2729 3129 3.374988 TGCTATGCTACTTTGTGTCATGC 59.625 43.478 0.00 0.00 0.00 4.06
2730 3130 3.374988 GCTATGCTACTTTGTGTCATGCA 59.625 43.478 0.00 0.00 35.34 3.96
2731 3131 4.036027 GCTATGCTACTTTGTGTCATGCAT 59.964 41.667 0.00 0.00 40.50 3.96
2732 3132 3.835378 TGCTACTTTGTGTCATGCATG 57.165 42.857 21.07 21.07 0.00 4.06
2733 3133 3.410508 TGCTACTTTGTGTCATGCATGA 58.589 40.909 25.42 25.42 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.422876 GTCCAAACAAATAAAACCGCGAC 59.577 43.478 8.23 0.00 0.00 5.19
25 26 8.582433 AACTAATGTCCAAACAAATAAAACCG 57.418 30.769 0.00 0.00 39.30 4.44
39 40 5.798125 TTGCCATTTCAAACTAATGTCCA 57.202 34.783 0.00 0.00 32.38 4.02
135 136 4.027674 TGTACAAGCTAAATCCCAGCAA 57.972 40.909 0.00 0.00 41.66 3.91
142 143 7.219535 CAGCATCACATTTGTACAAGCTAAATC 59.780 37.037 13.82 1.56 0.00 2.17
224 225 2.362077 TGCCAAAGAGCAGGAAGAAAAC 59.638 45.455 0.00 0.00 38.00 2.43
265 266 7.678947 ATGCAGAATTATACTGTATTCCTGC 57.321 36.000 22.16 22.16 37.39 4.85
347 351 3.117701 TGAGGGAGAGAGAGTACAGGATG 60.118 52.174 0.00 0.00 46.00 3.51
348 352 3.127250 TGAGGGAGAGAGAGTACAGGAT 58.873 50.000 0.00 0.00 0.00 3.24
430 434 3.355378 CTGCCAAGGATTCCAACATGTA 58.645 45.455 5.29 0.00 0.00 2.29
431 435 2.173519 CTGCCAAGGATTCCAACATGT 58.826 47.619 5.29 0.00 0.00 3.21
521 525 9.092876 CTCTAAGAACTCTTATTAAGGCACAAG 57.907 37.037 3.66 0.00 37.75 3.16
522 526 8.812972 TCTCTAAGAACTCTTATTAAGGCACAA 58.187 33.333 3.66 0.00 37.75 3.33
523 527 8.362464 TCTCTAAGAACTCTTATTAAGGCACA 57.638 34.615 3.66 0.00 37.75 4.57
524 528 9.825109 AATCTCTAAGAACTCTTATTAAGGCAC 57.175 33.333 3.66 0.00 37.75 5.01
532 536 9.810870 ACCCGTATAATCTCTAAGAACTCTTAT 57.189 33.333 0.00 0.00 37.75 1.73
533 537 9.064706 CACCCGTATAATCTCTAAGAACTCTTA 57.935 37.037 0.00 0.00 37.40 2.10
534 538 7.560626 ACACCCGTATAATCTCTAAGAACTCTT 59.439 37.037 0.00 0.00 39.85 2.85
535 539 7.013464 CACACCCGTATAATCTCTAAGAACTCT 59.987 40.741 0.00 0.00 0.00 3.24
536 540 7.140048 CACACCCGTATAATCTCTAAGAACTC 58.860 42.308 0.00 0.00 0.00 3.01
537 541 6.040616 CCACACCCGTATAATCTCTAAGAACT 59.959 42.308 0.00 0.00 0.00 3.01
538 542 6.183360 ACCACACCCGTATAATCTCTAAGAAC 60.183 42.308 0.00 0.00 0.00 3.01
539 543 5.895534 ACCACACCCGTATAATCTCTAAGAA 59.104 40.000 0.00 0.00 0.00 2.52
672 676 5.683876 ACCATAGAGCACATTAGTTCAGT 57.316 39.130 0.00 0.00 0.00 3.41
792 799 9.331106 GTATTTAACTAGAGCAAAGACAAAAGC 57.669 33.333 0.00 0.00 0.00 3.51
924 931 8.709272 AATTTGAATTGACAATGGGGAAATTT 57.291 26.923 0.34 0.00 0.00 1.82
1078 1085 2.146342 CAAGAAATCATCGGATCCGGG 58.854 52.381 32.79 24.35 40.25 5.73
1122 1129 6.884280 AGTTCGACTTCCTTTTCATTTGAT 57.116 33.333 0.00 0.00 0.00 2.57
1259 1266 1.067425 TGGTATCACGTGAACCTTCCG 60.067 52.381 31.54 4.83 34.23 4.30
1340 1347 6.697395 TCATCCTGAGTATCTTTTTCGACAA 58.303 36.000 0.00 0.00 34.92 3.18
1344 1351 9.265901 ACATTATCATCCTGAGTATCTTTTTCG 57.734 33.333 0.00 0.00 34.92 3.46
1497 1507 3.373849 CTGCTCGATGACTTCAGATGAG 58.626 50.000 0.00 2.40 0.00 2.90
1566 1576 0.310543 CGCTCTCATCCTCGGAGAAG 59.689 60.000 6.58 0.00 40.64 2.85
1950 1970 7.692291 GTCCAGACATATACAAAACAAACATCG 59.308 37.037 0.00 0.00 0.00 3.84
1991 2016 5.356426 TCTGACTGAATTGAACTCAAACGA 58.644 37.500 0.00 0.00 39.55 3.85
2010 2035 0.625849 GAGGCCCCTCCAAAATCTGA 59.374 55.000 0.00 0.00 37.11 3.27
2108 2497 7.383300 CAGCTTATTGAAAAGGAAAAGAACAGG 59.617 37.037 0.00 0.00 0.00 4.00
2119 2508 3.056322 AGCAAGCCAGCTTATTGAAAAGG 60.056 43.478 4.24 0.00 43.70 3.11
2254 2643 8.997323 ACAAACTGTTTTGAATTTCATGAACAA 58.003 25.926 20.20 6.76 44.38 2.83
2333 2723 5.034152 GTGAAGTTTCTTTCAAATGCACGA 58.966 37.500 0.00 0.00 38.69 4.35
2334 2724 4.797868 TGTGAAGTTTCTTTCAAATGCACG 59.202 37.500 0.00 0.00 38.69 5.34
2375 2767 6.729690 AAATTGTGAAGGTCCTCAAATTCA 57.270 33.333 0.00 0.00 0.00 2.57
2521 2914 4.279420 GGAAGCTTCCACAATCTTGTTCTT 59.721 41.667 35.71 0.00 46.76 2.52
2523 2916 4.166187 GGAAGCTTCCACAATCTTGTTC 57.834 45.455 35.71 7.61 46.76 3.18
2537 2930 0.909610 TGGATGGTCCGAGGAAGCTT 60.910 55.000 0.00 0.00 40.17 3.74
2538 2931 0.909610 TTGGATGGTCCGAGGAAGCT 60.910 55.000 0.00 0.00 40.17 3.74
2540 2933 2.717639 ATTTGGATGGTCCGAGGAAG 57.282 50.000 0.00 0.00 40.17 3.46
2574 2974 3.567164 CACCACTATGAGAATGGCCATTC 59.433 47.826 40.10 40.10 45.66 2.67
2575 2975 3.559069 CACCACTATGAGAATGGCCATT 58.441 45.455 31.09 31.09 36.96 3.16
2576 2976 2.158564 CCACCACTATGAGAATGGCCAT 60.159 50.000 14.09 14.09 36.96 4.40
2577 2977 1.212688 CCACCACTATGAGAATGGCCA 59.787 52.381 8.56 8.56 36.96 5.36
2578 2978 1.212935 ACCACCACTATGAGAATGGCC 59.787 52.381 0.00 0.00 36.96 5.36
2579 2979 2.717639 ACCACCACTATGAGAATGGC 57.282 50.000 0.00 0.00 36.96 4.40
2580 2980 5.551305 TGATACCACCACTATGAGAATGG 57.449 43.478 0.00 0.00 39.57 3.16
2581 2981 6.815641 GCTATGATACCACCACTATGAGAATG 59.184 42.308 0.00 0.00 0.00 2.67
2582 2982 6.728164 AGCTATGATACCACCACTATGAGAAT 59.272 38.462 0.00 0.00 0.00 2.40
2583 2983 6.015095 CAGCTATGATACCACCACTATGAGAA 60.015 42.308 0.00 0.00 0.00 2.87
2584 2984 5.478332 CAGCTATGATACCACCACTATGAGA 59.522 44.000 0.00 0.00 0.00 3.27
2585 2985 5.337089 CCAGCTATGATACCACCACTATGAG 60.337 48.000 0.00 0.00 0.00 2.90
2586 2986 4.528206 CCAGCTATGATACCACCACTATGA 59.472 45.833 0.00 0.00 0.00 2.15
2587 2987 4.284490 ACCAGCTATGATACCACCACTATG 59.716 45.833 0.00 0.00 0.00 2.23
2588 2988 4.493618 ACCAGCTATGATACCACCACTAT 58.506 43.478 0.00 0.00 0.00 2.12
2589 2989 3.923648 ACCAGCTATGATACCACCACTA 58.076 45.455 0.00 0.00 0.00 2.74
2590 2990 2.764269 ACCAGCTATGATACCACCACT 58.236 47.619 0.00 0.00 0.00 4.00
2591 2991 4.283467 TGATACCAGCTATGATACCACCAC 59.717 45.833 0.00 0.00 0.00 4.16
2592 2992 4.488770 TGATACCAGCTATGATACCACCA 58.511 43.478 0.00 0.00 0.00 4.17
2593 2993 5.423015 CATGATACCAGCTATGATACCACC 58.577 45.833 0.00 0.00 0.00 4.61
2594 2994 4.872691 GCATGATACCAGCTATGATACCAC 59.127 45.833 0.00 0.00 0.00 4.16
2595 2995 4.531732 TGCATGATACCAGCTATGATACCA 59.468 41.667 0.00 0.00 0.00 3.25
2596 2996 4.872691 GTGCATGATACCAGCTATGATACC 59.127 45.833 0.00 0.00 0.00 2.73
2597 2997 5.728471 AGTGCATGATACCAGCTATGATAC 58.272 41.667 0.00 0.00 0.00 2.24
2598 2998 5.393461 CGAGTGCATGATACCAGCTATGATA 60.393 44.000 0.00 0.00 0.00 2.15
2599 2999 4.620097 CGAGTGCATGATACCAGCTATGAT 60.620 45.833 0.00 0.00 0.00 2.45
2600 3000 3.305608 CGAGTGCATGATACCAGCTATGA 60.306 47.826 0.00 0.00 0.00 2.15
2601 3001 2.991866 CGAGTGCATGATACCAGCTATG 59.008 50.000 0.00 0.00 0.00 2.23
2602 3002 2.893489 TCGAGTGCATGATACCAGCTAT 59.107 45.455 0.00 0.00 0.00 2.97
2603 3003 2.294512 CTCGAGTGCATGATACCAGCTA 59.705 50.000 3.62 0.00 0.00 3.32
2604 3004 1.068281 CTCGAGTGCATGATACCAGCT 59.932 52.381 3.62 0.00 0.00 4.24
2605 3005 1.067669 TCTCGAGTGCATGATACCAGC 59.932 52.381 13.13 0.00 0.00 4.85
2606 3006 3.443099 TTCTCGAGTGCATGATACCAG 57.557 47.619 13.13 0.00 0.00 4.00
2607 3007 4.559502 GCTATTCTCGAGTGCATGATACCA 60.560 45.833 13.13 0.00 0.00 3.25
2608 3008 3.923461 GCTATTCTCGAGTGCATGATACC 59.077 47.826 13.13 0.00 0.00 2.73
2609 3009 4.550422 TGCTATTCTCGAGTGCATGATAC 58.450 43.478 13.13 0.00 0.00 2.24
2610 3010 4.853924 TGCTATTCTCGAGTGCATGATA 57.146 40.909 13.13 2.57 0.00 2.15
2611 3011 3.740631 TGCTATTCTCGAGTGCATGAT 57.259 42.857 13.13 1.55 0.00 2.45
2612 3012 3.525268 TTGCTATTCTCGAGTGCATGA 57.475 42.857 13.13 3.12 33.50 3.07
2613 3013 3.371898 TGTTTGCTATTCTCGAGTGCATG 59.628 43.478 13.13 1.90 33.50 4.06
2614 3014 3.599343 TGTTTGCTATTCTCGAGTGCAT 58.401 40.909 13.13 6.08 33.50 3.96
2615 3015 3.038788 TGTTTGCTATTCTCGAGTGCA 57.961 42.857 13.13 15.15 0.00 4.57
2616 3016 3.618594 TCATGTTTGCTATTCTCGAGTGC 59.381 43.478 13.13 12.86 0.00 4.40
2617 3017 5.521372 TCATCATGTTTGCTATTCTCGAGTG 59.479 40.000 13.13 0.00 0.00 3.51
2618 3018 5.664457 TCATCATGTTTGCTATTCTCGAGT 58.336 37.500 13.13 0.00 0.00 4.18
2619 3019 6.202379 ACATCATCATGTTTGCTATTCTCGAG 59.798 38.462 5.93 5.93 40.66 4.04
2620 3020 6.018507 CACATCATCATGTTTGCTATTCTCGA 60.019 38.462 0.00 0.00 40.66 4.04
2621 3021 6.134061 CACATCATCATGTTTGCTATTCTCG 58.866 40.000 0.00 0.00 40.66 4.04
2622 3022 6.436261 CCACATCATCATGTTTGCTATTCTC 58.564 40.000 0.00 0.00 40.66 2.87
2623 3023 5.221185 GCCACATCATCATGTTTGCTATTCT 60.221 40.000 0.00 0.00 40.66 2.40
2624 3024 4.980434 GCCACATCATCATGTTTGCTATTC 59.020 41.667 0.00 0.00 40.66 1.75
2625 3025 4.403113 TGCCACATCATCATGTTTGCTATT 59.597 37.500 3.23 0.00 40.66 1.73
2626 3026 3.955551 TGCCACATCATCATGTTTGCTAT 59.044 39.130 3.23 0.00 40.66 2.97
2627 3027 3.354467 TGCCACATCATCATGTTTGCTA 58.646 40.909 3.23 0.00 40.66 3.49
2628 3028 2.172679 TGCCACATCATCATGTTTGCT 58.827 42.857 3.23 0.00 40.66 3.91
2629 3029 2.658373 TGCCACATCATCATGTTTGC 57.342 45.000 0.00 0.00 40.66 3.68
2630 3030 4.811908 TCTTTGCCACATCATCATGTTTG 58.188 39.130 0.00 0.00 40.66 2.93
2631 3031 5.471556 TTCTTTGCCACATCATCATGTTT 57.528 34.783 0.00 0.00 40.66 2.83
2632 3032 5.670792 ATTCTTTGCCACATCATCATGTT 57.329 34.783 0.00 0.00 40.66 2.71
2633 3033 5.670792 AATTCTTTGCCACATCATCATGT 57.329 34.783 0.00 0.00 44.72 3.21
2634 3034 7.977293 TCTTTAATTCTTTGCCACATCATCATG 59.023 33.333 0.00 0.00 35.92 3.07
2635 3035 8.070034 TCTTTAATTCTTTGCCACATCATCAT 57.930 30.769 0.00 0.00 0.00 2.45
2636 3036 7.465353 TCTTTAATTCTTTGCCACATCATCA 57.535 32.000 0.00 0.00 0.00 3.07
2637 3037 8.246180 TCTTCTTTAATTCTTTGCCACATCATC 58.754 33.333 0.00 0.00 0.00 2.92
2638 3038 8.125978 TCTTCTTTAATTCTTTGCCACATCAT 57.874 30.769 0.00 0.00 0.00 2.45
2639 3039 7.448161 TCTCTTCTTTAATTCTTTGCCACATCA 59.552 33.333 0.00 0.00 0.00 3.07
2640 3040 7.820648 TCTCTTCTTTAATTCTTTGCCACATC 58.179 34.615 0.00 0.00 0.00 3.06
2641 3041 7.667219 TCTCTCTTCTTTAATTCTTTGCCACAT 59.333 33.333 0.00 0.00 0.00 3.21
2642 3042 6.998074 TCTCTCTTCTTTAATTCTTTGCCACA 59.002 34.615 0.00 0.00 0.00 4.17
2643 3043 7.361628 CCTCTCTCTTCTTTAATTCTTTGCCAC 60.362 40.741 0.00 0.00 0.00 5.01
2644 3044 6.656693 CCTCTCTCTTCTTTAATTCTTTGCCA 59.343 38.462 0.00 0.00 0.00 4.92
2645 3045 6.881602 TCCTCTCTCTTCTTTAATTCTTTGCC 59.118 38.462 0.00 0.00 0.00 4.52
2646 3046 7.913674 TCCTCTCTCTTCTTTAATTCTTTGC 57.086 36.000 0.00 0.00 0.00 3.68
2655 3055 9.976776 TGTTACTCTAATCCTCTCTCTTCTTTA 57.023 33.333 0.00 0.00 0.00 1.85
2656 3056 8.887264 TGTTACTCTAATCCTCTCTCTTCTTT 57.113 34.615 0.00 0.00 0.00 2.52
2658 3058 9.793259 CTATGTTACTCTAATCCTCTCTCTTCT 57.207 37.037 0.00 0.00 0.00 2.85
2659 3059 9.010029 CCTATGTTACTCTAATCCTCTCTCTTC 57.990 40.741 0.00 0.00 0.00 2.87
2660 3060 8.507761 ACCTATGTTACTCTAATCCTCTCTCTT 58.492 37.037 0.00 0.00 0.00 2.85
2661 3061 8.052621 ACCTATGTTACTCTAATCCTCTCTCT 57.947 38.462 0.00 0.00 0.00 3.10
2662 3062 9.444600 CTACCTATGTTACTCTAATCCTCTCTC 57.555 40.741 0.00 0.00 0.00 3.20
2663 3063 9.173231 TCTACCTATGTTACTCTAATCCTCTCT 57.827 37.037 0.00 0.00 0.00 3.10
2664 3064 9.969001 ATCTACCTATGTTACTCTAATCCTCTC 57.031 37.037 0.00 0.00 0.00 3.20
2667 3067 9.669887 CGTATCTACCTATGTTACTCTAATCCT 57.330 37.037 0.00 0.00 0.00 3.24
2668 3068 8.891720 CCGTATCTACCTATGTTACTCTAATCC 58.108 40.741 0.00 0.00 0.00 3.01
2669 3069 9.447157 ACCGTATCTACCTATGTTACTCTAATC 57.553 37.037 0.00 0.00 0.00 1.75
2673 3073 8.600668 TGATACCGTATCTACCTATGTTACTCT 58.399 37.037 17.49 0.00 36.17 3.24
2674 3074 8.783833 TGATACCGTATCTACCTATGTTACTC 57.216 38.462 17.49 0.00 36.17 2.59
2675 3075 9.175312 CATGATACCGTATCTACCTATGTTACT 57.825 37.037 17.49 0.00 36.17 2.24
2676 3076 8.954350 ACATGATACCGTATCTACCTATGTTAC 58.046 37.037 17.49 0.00 36.17 2.50
2677 3077 9.524496 AACATGATACCGTATCTACCTATGTTA 57.476 33.333 21.37 2.88 36.17 2.41
2678 3078 8.418597 AACATGATACCGTATCTACCTATGTT 57.581 34.615 19.11 19.11 34.59 2.71
2679 3079 9.524496 TTAACATGATACCGTATCTACCTATGT 57.476 33.333 17.49 14.69 36.17 2.29
2683 3083 7.817962 GCATTTAACATGATACCGTATCTACCT 59.182 37.037 17.49 5.06 36.17 3.08
2684 3084 7.817962 AGCATTTAACATGATACCGTATCTACC 59.182 37.037 17.49 0.00 36.17 3.18
2685 3085 8.758633 AGCATTTAACATGATACCGTATCTAC 57.241 34.615 17.49 0.00 36.17 2.59
2687 3087 9.371136 CATAGCATTTAACATGATACCGTATCT 57.629 33.333 17.49 2.46 36.17 1.98
2688 3088 8.116753 GCATAGCATTTAACATGATACCGTATC 58.883 37.037 11.09 11.09 35.74 2.24
2689 3089 7.824289 AGCATAGCATTTAACATGATACCGTAT 59.176 33.333 0.00 0.00 0.00 3.06
2690 3090 7.158697 AGCATAGCATTTAACATGATACCGTA 58.841 34.615 0.00 0.00 0.00 4.02
2691 3091 5.997746 AGCATAGCATTTAACATGATACCGT 59.002 36.000 0.00 0.00 0.00 4.83
2692 3092 6.486253 AGCATAGCATTTAACATGATACCG 57.514 37.500 0.00 0.00 0.00 4.02
2693 3093 8.553459 AGTAGCATAGCATTTAACATGATACC 57.447 34.615 0.00 0.00 39.77 2.73
2696 3096 8.906867 ACAAAGTAGCATAGCATTTAACATGAT 58.093 29.630 0.00 0.00 0.00 2.45
2697 3097 8.183536 CACAAAGTAGCATAGCATTTAACATGA 58.816 33.333 0.00 0.00 0.00 3.07
2698 3098 7.970061 ACACAAAGTAGCATAGCATTTAACATG 59.030 33.333 0.00 0.00 0.00 3.21
2699 3099 8.055279 ACACAAAGTAGCATAGCATTTAACAT 57.945 30.769 0.00 0.00 0.00 2.71
2700 3100 7.174080 TGACACAAAGTAGCATAGCATTTAACA 59.826 33.333 0.00 0.00 0.00 2.41
2701 3101 7.526608 TGACACAAAGTAGCATAGCATTTAAC 58.473 34.615 0.00 0.00 0.00 2.01
2702 3102 7.680442 TGACACAAAGTAGCATAGCATTTAA 57.320 32.000 0.00 0.00 0.00 1.52
2703 3103 7.679400 GCATGACACAAAGTAGCATAGCATTTA 60.679 37.037 0.00 0.00 0.00 1.40
2704 3104 6.558009 CATGACACAAAGTAGCATAGCATTT 58.442 36.000 0.00 0.00 0.00 2.32
2705 3105 5.449588 GCATGACACAAAGTAGCATAGCATT 60.450 40.000 0.00 0.00 0.00 3.56
2706 3106 4.036027 GCATGACACAAAGTAGCATAGCAT 59.964 41.667 0.00 0.00 0.00 3.79
2707 3107 3.374988 GCATGACACAAAGTAGCATAGCA 59.625 43.478 0.00 0.00 0.00 3.49
2708 3108 3.374988 TGCATGACACAAAGTAGCATAGC 59.625 43.478 0.00 0.00 30.65 2.97
2709 3109 5.295045 TCATGCATGACACAAAGTAGCATAG 59.705 40.000 25.42 0.00 39.67 2.23
2710 3110 5.184711 TCATGCATGACACAAAGTAGCATA 58.815 37.500 25.42 0.00 39.67 3.14
2711 3111 4.011698 TCATGCATGACACAAAGTAGCAT 58.988 39.130 25.42 0.00 41.24 3.79
2712 3112 3.410508 TCATGCATGACACAAAGTAGCA 58.589 40.909 25.42 0.00 37.13 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.