Multiple sequence alignment - TraesCS6D01G083200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G083200 chr6D 100.000 5617 0 0 1 5617 48449910 48455526 0.000000e+00 10373.0
1 TraesCS6D01G083200 chr6D 90.073 413 33 3 4594 4998 48465591 48466003 3.850000e-146 529.0
2 TraesCS6D01G083200 chr6D 87.197 289 37 0 4193 4481 48158978 48158690 4.200000e-86 329.0
3 TraesCS6D01G083200 chr6D 90.438 251 17 4 4595 4840 48463008 48463256 1.950000e-84 324.0
4 TraesCS6D01G083200 chr6D 81.265 427 31 18 5237 5617 48463545 48463968 3.290000e-77 300.0
5 TraesCS6D01G083200 chr6D 91.447 152 12 1 5091 5241 93646373 93646222 2.050000e-49 207.0
6 TraesCS6D01G083200 chr6D 80.814 172 11 7 4933 5086 48463379 48463546 1.280000e-21 115.0
7 TraesCS6D01G083200 chr6D 92.308 78 6 0 4559 4636 48158661 48158584 1.650000e-20 111.0
8 TraesCS6D01G083200 chr6D 84.146 82 4 1 5005 5086 48466028 48466100 2.810000e-08 71.3
9 TraesCS6D01G083200 chr6A 97.384 3631 82 9 1276 4896 66433545 66429918 0.000000e+00 6167.0
10 TraesCS6D01G083200 chr6A 93.316 374 21 3 774 1144 66434047 66433675 2.960000e-152 549.0
11 TraesCS6D01G083200 chr6A 95.935 246 9 1 4652 4896 66427004 66426759 1.130000e-106 398.0
12 TraesCS6D01G083200 chr6A 95.885 243 9 1 4654 4895 66429063 66428821 5.280000e-105 392.0
13 TraesCS6D01G083200 chr6A 87.540 313 16 9 272 578 66434697 66434402 1.940000e-89 340.0
14 TraesCS6D01G083200 chr6A 95.735 211 8 1 4687 4896 66428072 66427862 6.970000e-89 339.0
15 TraesCS6D01G083200 chr6A 91.275 149 13 0 5091 5239 297641367 297641219 2.650000e-48 204.0
16 TraesCS6D01G083200 chr6A 93.069 101 5 1 5234 5334 66426113 66426015 4.530000e-31 147.0
17 TraesCS6D01G083200 chr6A 89.524 105 11 0 4903 5007 66388446 66388342 3.530000e-27 134.0
18 TraesCS6D01G083200 chr6A 100.000 64 0 0 5554 5617 66426002 66425939 9.890000e-23 119.0
19 TraesCS6D01G083200 chr6A 97.101 69 2 0 4881 4949 66388515 66388447 3.560000e-22 117.0
20 TraesCS6D01G083200 chr6A 92.308 78 6 0 4559 4636 66811800 66811877 1.650000e-20 111.0
21 TraesCS6D01G083200 chr6A 90.244 82 8 0 4400 4481 66811690 66811771 2.140000e-19 108.0
22 TraesCS6D01G083200 chr6A 84.146 82 4 4 5005 5086 66388326 66388254 2.810000e-08 71.3
23 TraesCS6D01G083200 chr6A 85.507 69 8 2 5450 5516 67001547 67001615 2.810000e-08 71.3
24 TraesCS6D01G083200 chr6A 89.130 46 2 3 5007 5049 66428608 66428563 3.000000e-03 54.7
25 TraesCS6D01G083200 chr6B 97.551 3594 64 10 1317 4896 122970686 122967103 0.000000e+00 6128.0
26 TraesCS6D01G083200 chr6B 85.302 796 39 36 455 1206 122971672 122970911 0.000000e+00 750.0
27 TraesCS6D01G083200 chr6B 94.975 199 8 1 5136 5334 122966930 122966734 1.520000e-80 311.0
28 TraesCS6D01G083200 chr6B 83.618 293 35 7 4202 4481 123414776 123415068 4.320000e-66 263.0
29 TraesCS6D01G083200 chr6B 79.767 257 32 7 3568 3821 123015597 123015836 9.680000e-38 169.0
30 TraesCS6D01G083200 chr6B 82.278 158 12 9 273 416 122971812 122971657 7.640000e-24 122.0
31 TraesCS6D01G083200 chr6B 98.529 68 1 0 5550 5617 122966725 122966658 2.750000e-23 121.0
32 TraesCS6D01G083200 chr6B 90.805 87 7 1 4030 4115 123203003 123203089 1.280000e-21 115.0
33 TraesCS6D01G083200 chr6B 92.308 78 6 0 4559 4636 123203958 123204035 1.650000e-20 111.0
34 TraesCS6D01G083200 chr6B 92.308 78 6 0 4559 4636 123415097 123415174 1.650000e-20 111.0
35 TraesCS6D01G083200 chr6B 85.915 71 8 2 5450 5518 123494171 123494241 2.170000e-09 75.0
36 TraesCS6D01G083200 chr4B 90.110 273 20 6 1 270 665225081 665224813 1.160000e-91 348.0
37 TraesCS6D01G083200 chr3B 90.074 272 21 6 1 271 675149120 675148854 1.160000e-91 348.0
38 TraesCS6D01G083200 chr5D 89.706 272 23 5 1 271 565329870 565329603 5.390000e-90 342.0
39 TraesCS6D01G083200 chr5D 91.503 153 12 1 5090 5241 59947830 59947678 5.700000e-50 209.0
40 TraesCS6D01G083200 chr5B 89.377 273 25 3 1 273 650565382 650565114 1.940000e-89 340.0
41 TraesCS6D01G083200 chr4D 89.299 271 23 5 1 270 44875896 44875631 9.020000e-88 335.0
42 TraesCS6D01G083200 chr4D 91.275 149 13 0 5090 5238 326382461 326382609 2.650000e-48 204.0
43 TraesCS6D01G083200 chr1B 89.011 273 25 5 1 272 613238687 613238419 3.240000e-87 333.0
44 TraesCS6D01G083200 chr1B 89.219 269 23 5 1 268 282310594 282310857 1.170000e-86 331.0
45 TraesCS6D01G083200 chr7A 88.930 271 25 4 1 271 43469409 43469144 4.200000e-86 329.0
46 TraesCS6D01G083200 chr4A 88.476 269 25 5 4 271 562294999 562295262 2.520000e-83 320.0
47 TraesCS6D01G083200 chr7D 92.568 148 11 0 5091 5238 199348859 199349006 4.410000e-51 213.0
48 TraesCS6D01G083200 chr3D 91.946 149 12 0 5090 5238 187836456 187836308 5.700000e-50 209.0
49 TraesCS6D01G083200 chr1D 91.333 150 13 0 5090 5239 132857818 132857669 7.380000e-49 206.0
50 TraesCS6D01G083200 chr5A 90.850 153 13 1 5090 5241 48469189 48469037 2.650000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G083200 chr6D 48449910 48455526 5616 False 10373.000000 10373 100.000000 1 5617 1 chr6D.!!$F1 5616
1 TraesCS6D01G083200 chr6D 48463008 48466100 3092 False 267.860000 529 85.347200 4594 5617 5 chr6D.!!$F2 1023
2 TraesCS6D01G083200 chr6A 66425939 66434697 8758 True 945.077778 6167 94.221556 272 5617 9 chr6A.!!$R3 5345
3 TraesCS6D01G083200 chr6B 122966658 122971812 5154 True 1486.400000 6128 91.727000 273 5617 5 chr6B.!!$R1 5344

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
744 812 0.036875 CACCAACACCTCCTTCTCCC 59.963 60.000 0.00 0.0 0.00 4.30 F
747 815 0.326264 CAACACCTCCTTCTCCCCTG 59.674 60.000 0.00 0.0 0.00 4.45 F
1611 1963 0.961857 GCATGCAGGATGACACCACA 60.962 55.000 14.21 0.0 39.69 4.17 F
2369 2725 1.463674 CCATTCCCACCTTTTCCTCG 58.536 55.000 0.00 0.0 0.00 4.63 F
2596 2956 2.558359 AGTGCTAAATTTGCAGGTCACC 59.442 45.455 13.32 0.0 41.41 4.02 F
2910 3270 2.616842 ACACCAAAGCTCAAAAGGTACG 59.383 45.455 0.00 0.0 31.54 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2361 0.392863 TGCCATCTTCACCATGGTCG 60.393 55.000 16.53 11.15 42.68 4.79 R
2506 2862 3.417101 ACATTTGGAAGCCGACAACATA 58.583 40.909 0.00 0.00 0.00 2.29 R
2805 3165 1.667236 TCACTGTGCTTTGTGTGGAG 58.333 50.000 2.12 0.00 35.82 3.86 R
3686 4047 2.166829 TCTCCTCTGACTGCTTCTGTC 58.833 52.381 0.00 0.00 33.83 3.51 R
4240 4601 3.251484 TCCATCCTGGTCTTCTTTGTCT 58.749 45.455 0.00 0.00 39.03 3.41 R
4898 7329 2.971330 TGGCCATTCAAATCAAACCAGT 59.029 40.909 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.456221 ACTCTTGCTACATCGACCGG 59.544 55.000 0.00 0.00 0.00 5.28
20 21 0.456221 CTCTTGCTACATCGACCGGT 59.544 55.000 6.92 6.92 0.00 5.28
21 22 0.454600 TCTTGCTACATCGACCGGTC 59.545 55.000 25.28 25.28 0.00 4.79
33 34 4.446413 CCGGTCGGTGGTAGCACC 62.446 72.222 30.26 30.26 41.68 5.01
34 35 3.379445 CGGTCGGTGGTAGCACCT 61.379 66.667 34.54 0.00 42.87 4.00
35 36 2.048023 CGGTCGGTGGTAGCACCTA 61.048 63.158 34.54 25.23 42.87 3.08
36 37 1.389609 CGGTCGGTGGTAGCACCTAT 61.390 60.000 34.54 0.00 42.87 2.57
37 38 0.828677 GGTCGGTGGTAGCACCTATT 59.171 55.000 34.54 0.00 42.87 1.73
38 39 1.202498 GGTCGGTGGTAGCACCTATTC 60.202 57.143 34.54 22.57 42.87 1.75
39 40 1.755380 GTCGGTGGTAGCACCTATTCT 59.245 52.381 34.54 0.00 42.87 2.40
40 41 2.167900 GTCGGTGGTAGCACCTATTCTT 59.832 50.000 34.54 0.00 42.87 2.52
41 42 2.835764 TCGGTGGTAGCACCTATTCTTT 59.164 45.455 34.54 0.00 42.87 2.52
42 43 3.118884 TCGGTGGTAGCACCTATTCTTTC 60.119 47.826 34.54 11.39 42.87 2.62
43 44 3.118738 CGGTGGTAGCACCTATTCTTTCT 60.119 47.826 34.54 0.00 42.87 2.52
44 45 4.192317 GGTGGTAGCACCTATTCTTTCTG 58.808 47.826 32.12 0.00 41.84 3.02
45 46 4.081087 GGTGGTAGCACCTATTCTTTCTGA 60.081 45.833 32.12 0.00 41.84 3.27
46 47 5.488341 GTGGTAGCACCTATTCTTTCTGAA 58.512 41.667 14.20 0.00 39.58 3.02
47 48 5.938125 GTGGTAGCACCTATTCTTTCTGAAA 59.062 40.000 14.20 2.44 39.58 2.69
48 49 6.599638 GTGGTAGCACCTATTCTTTCTGAAAT 59.400 38.462 14.20 0.00 39.58 2.17
49 50 7.121315 GTGGTAGCACCTATTCTTTCTGAAATT 59.879 37.037 14.20 0.00 39.58 1.82
50 51 7.121168 TGGTAGCACCTATTCTTTCTGAAATTG 59.879 37.037 2.88 0.00 39.58 2.32
51 52 6.521151 AGCACCTATTCTTTCTGAAATTGG 57.479 37.500 2.88 2.68 38.29 3.16
52 53 6.248433 AGCACCTATTCTTTCTGAAATTGGA 58.752 36.000 2.88 0.00 38.29 3.53
53 54 6.376581 AGCACCTATTCTTTCTGAAATTGGAG 59.623 38.462 2.88 0.53 38.29 3.86
54 55 6.375455 GCACCTATTCTTTCTGAAATTGGAGA 59.625 38.462 2.88 0.00 38.29 3.71
55 56 7.414984 GCACCTATTCTTTCTGAAATTGGAGAG 60.415 40.741 2.88 0.00 38.29 3.20
56 57 6.601217 ACCTATTCTTTCTGAAATTGGAGAGC 59.399 38.462 2.88 0.00 38.29 4.09
57 58 6.827762 CCTATTCTTTCTGAAATTGGAGAGCT 59.172 38.462 2.88 0.00 38.29 4.09
58 59 7.338957 CCTATTCTTTCTGAAATTGGAGAGCTT 59.661 37.037 2.88 0.00 38.29 3.74
59 60 5.954296 TCTTTCTGAAATTGGAGAGCTTG 57.046 39.130 2.88 0.00 0.00 4.01
60 61 4.217118 TCTTTCTGAAATTGGAGAGCTTGC 59.783 41.667 2.88 0.00 0.00 4.01
61 62 3.430042 TCTGAAATTGGAGAGCTTGCT 57.570 42.857 0.00 0.00 0.00 3.91
62 63 3.341823 TCTGAAATTGGAGAGCTTGCTC 58.658 45.455 14.16 14.16 0.00 4.26
63 64 3.008813 TCTGAAATTGGAGAGCTTGCTCT 59.991 43.478 23.17 23.17 35.26 4.09
64 65 3.757493 CTGAAATTGGAGAGCTTGCTCTT 59.243 43.478 23.68 8.97 35.26 2.85
65 66 4.147321 TGAAATTGGAGAGCTTGCTCTTT 58.853 39.130 23.68 14.62 35.26 2.52
66 67 5.316167 TGAAATTGGAGAGCTTGCTCTTTA 58.684 37.500 23.68 14.12 35.26 1.85
67 68 5.413833 TGAAATTGGAGAGCTTGCTCTTTAG 59.586 40.000 23.68 0.00 35.26 1.85
68 69 4.566426 ATTGGAGAGCTTGCTCTTTAGT 57.434 40.909 23.68 11.46 35.26 2.24
69 70 4.357918 TTGGAGAGCTTGCTCTTTAGTT 57.642 40.909 23.68 3.27 35.26 2.24
70 71 4.357918 TGGAGAGCTTGCTCTTTAGTTT 57.642 40.909 23.68 2.56 35.26 2.66
71 72 4.718961 TGGAGAGCTTGCTCTTTAGTTTT 58.281 39.130 23.68 1.85 35.26 2.43
72 73 5.865085 TGGAGAGCTTGCTCTTTAGTTTTA 58.135 37.500 23.68 4.83 35.26 1.52
73 74 6.476378 TGGAGAGCTTGCTCTTTAGTTTTAT 58.524 36.000 23.68 0.46 35.26 1.40
74 75 6.595716 TGGAGAGCTTGCTCTTTAGTTTTATC 59.404 38.462 23.68 9.03 35.26 1.75
75 76 6.821160 GGAGAGCTTGCTCTTTAGTTTTATCT 59.179 38.462 23.68 0.00 35.26 1.98
76 77 7.011016 GGAGAGCTTGCTCTTTAGTTTTATCTC 59.989 40.741 23.68 8.41 35.26 2.75
77 78 7.619965 AGAGCTTGCTCTTTAGTTTTATCTCT 58.380 34.615 18.29 0.00 0.00 3.10
78 79 8.100164 AGAGCTTGCTCTTTAGTTTTATCTCTT 58.900 33.333 18.29 0.00 0.00 2.85
79 80 8.628630 AGCTTGCTCTTTAGTTTTATCTCTTT 57.371 30.769 0.00 0.00 0.00 2.52
80 81 8.726068 AGCTTGCTCTTTAGTTTTATCTCTTTC 58.274 33.333 0.00 0.00 0.00 2.62
81 82 8.507249 GCTTGCTCTTTAGTTTTATCTCTTTCA 58.493 33.333 0.00 0.00 0.00 2.69
110 111 9.793252 ATTCAACATGTAATAAGATCAGCAAAC 57.207 29.630 0.00 0.00 0.00 2.93
111 112 7.463544 TCAACATGTAATAAGATCAGCAAACG 58.536 34.615 0.00 0.00 0.00 3.60
112 113 6.363577 ACATGTAATAAGATCAGCAAACGG 57.636 37.500 0.00 0.00 0.00 4.44
113 114 5.880332 ACATGTAATAAGATCAGCAAACGGT 59.120 36.000 0.00 0.00 0.00 4.83
114 115 6.374333 ACATGTAATAAGATCAGCAAACGGTT 59.626 34.615 0.00 0.00 0.00 4.44
115 116 6.417191 TGTAATAAGATCAGCAAACGGTTC 57.583 37.500 0.00 0.00 0.00 3.62
116 117 6.170506 TGTAATAAGATCAGCAAACGGTTCT 58.829 36.000 0.00 0.00 0.00 3.01
117 118 5.551760 AATAAGATCAGCAAACGGTTCTG 57.448 39.130 6.37 6.37 0.00 3.02
118 119 1.160137 AGATCAGCAAACGGTTCTGC 58.840 50.000 15.50 15.50 38.91 4.26
119 120 0.874390 GATCAGCAAACGGTTCTGCA 59.126 50.000 21.39 9.24 41.17 4.41
120 121 0.593128 ATCAGCAAACGGTTCTGCAC 59.407 50.000 21.39 2.17 41.17 4.57
121 122 0.746204 TCAGCAAACGGTTCTGCACA 60.746 50.000 21.39 10.50 41.17 4.57
122 123 0.311790 CAGCAAACGGTTCTGCACAT 59.688 50.000 21.39 6.62 41.17 3.21
123 124 0.593128 AGCAAACGGTTCTGCACATC 59.407 50.000 21.39 2.33 41.17 3.06
124 125 0.593128 GCAAACGGTTCTGCACATCT 59.407 50.000 17.27 0.00 38.48 2.90
125 126 1.664016 GCAAACGGTTCTGCACATCTG 60.664 52.381 17.27 2.32 38.48 2.90
126 127 1.603802 CAAACGGTTCTGCACATCTGT 59.396 47.619 0.00 0.00 0.00 3.41
137 138 3.914984 ACATCTGTGTGCTAAGCGT 57.085 47.368 0.00 0.00 37.14 5.07
138 139 1.432514 ACATCTGTGTGCTAAGCGTG 58.567 50.000 0.00 0.00 37.14 5.34
139 140 0.723414 CATCTGTGTGCTAAGCGTGG 59.277 55.000 0.00 0.00 0.00 4.94
140 141 1.021390 ATCTGTGTGCTAAGCGTGGC 61.021 55.000 0.00 0.00 0.00 5.01
141 142 1.669115 CTGTGTGCTAAGCGTGGCT 60.669 57.895 9.65 0.00 42.56 4.75
142 143 1.630244 CTGTGTGCTAAGCGTGGCTC 61.630 60.000 9.65 6.33 38.25 4.70
143 144 1.374758 GTGTGCTAAGCGTGGCTCT 60.375 57.895 9.65 0.00 38.25 4.09
144 145 0.108804 GTGTGCTAAGCGTGGCTCTA 60.109 55.000 9.65 0.00 38.25 2.43
145 146 0.108804 TGTGCTAAGCGTGGCTCTAC 60.109 55.000 9.65 0.00 38.25 2.59
146 147 1.138883 TGCTAAGCGTGGCTCTACG 59.861 57.895 9.65 1.32 46.28 3.51
154 155 1.922570 CGTGGCTCTACGCTTAATGT 58.077 50.000 0.00 0.00 37.24 2.71
155 156 1.588404 CGTGGCTCTACGCTTAATGTG 59.412 52.381 0.00 0.00 37.24 3.21
156 157 2.734175 CGTGGCTCTACGCTTAATGTGA 60.734 50.000 0.00 0.00 37.24 3.58
157 158 2.603560 GTGGCTCTACGCTTAATGTGAC 59.396 50.000 0.00 0.00 39.13 3.67
158 159 2.496070 TGGCTCTACGCTTAATGTGACT 59.504 45.455 0.00 0.00 39.13 3.41
159 160 2.860735 GGCTCTACGCTTAATGTGACTG 59.139 50.000 0.00 0.00 39.13 3.51
160 161 3.428999 GGCTCTACGCTTAATGTGACTGA 60.429 47.826 0.00 0.00 39.13 3.41
161 162 3.794028 GCTCTACGCTTAATGTGACTGAG 59.206 47.826 0.00 0.00 35.14 3.35
162 163 4.438880 GCTCTACGCTTAATGTGACTGAGA 60.439 45.833 0.00 0.00 35.14 3.27
163 164 5.236655 TCTACGCTTAATGTGACTGAGAG 57.763 43.478 0.00 0.00 0.00 3.20
164 165 2.611518 ACGCTTAATGTGACTGAGAGC 58.388 47.619 0.00 0.00 0.00 4.09
165 166 2.232452 ACGCTTAATGTGACTGAGAGCT 59.768 45.455 0.00 0.00 0.00 4.09
166 167 2.602211 CGCTTAATGTGACTGAGAGCTG 59.398 50.000 0.00 0.00 0.00 4.24
167 168 2.935201 GCTTAATGTGACTGAGAGCTGG 59.065 50.000 0.00 0.00 0.00 4.85
168 169 3.618507 GCTTAATGTGACTGAGAGCTGGT 60.619 47.826 0.00 0.00 0.00 4.00
169 170 4.573900 CTTAATGTGACTGAGAGCTGGTT 58.426 43.478 0.00 0.00 0.00 3.67
170 171 5.724328 CTTAATGTGACTGAGAGCTGGTTA 58.276 41.667 0.00 0.00 0.00 2.85
171 172 3.883830 ATGTGACTGAGAGCTGGTTAG 57.116 47.619 0.00 0.00 0.00 2.34
172 173 1.895798 TGTGACTGAGAGCTGGTTAGG 59.104 52.381 0.00 0.00 0.00 2.69
173 174 0.898320 TGACTGAGAGCTGGTTAGGC 59.102 55.000 0.00 0.00 0.00 3.93
174 175 1.190643 GACTGAGAGCTGGTTAGGCT 58.809 55.000 0.00 0.00 43.26 4.58
181 182 1.783071 AGCTGGTTAGGCTCTACTCC 58.217 55.000 0.00 0.00 34.70 3.85
182 183 1.289530 AGCTGGTTAGGCTCTACTCCT 59.710 52.381 0.00 0.00 34.70 3.69
183 184 2.514582 AGCTGGTTAGGCTCTACTCCTA 59.485 50.000 0.00 0.00 34.70 2.94
184 185 2.888414 GCTGGTTAGGCTCTACTCCTAG 59.112 54.545 0.00 0.00 37.48 3.02
185 186 2.888414 CTGGTTAGGCTCTACTCCTAGC 59.112 54.545 0.00 0.00 37.48 3.42
186 187 2.514582 TGGTTAGGCTCTACTCCTAGCT 59.485 50.000 0.00 0.00 37.50 3.32
187 188 3.052793 TGGTTAGGCTCTACTCCTAGCTT 60.053 47.826 0.00 0.00 37.50 3.74
188 189 3.570975 GGTTAGGCTCTACTCCTAGCTTC 59.429 52.174 0.00 0.00 37.50 3.86
189 190 2.375014 AGGCTCTACTCCTAGCTTCC 57.625 55.000 0.00 0.00 38.80 3.46
190 191 1.856920 AGGCTCTACTCCTAGCTTCCT 59.143 52.381 0.00 0.00 38.80 3.36
191 192 1.960689 GGCTCTACTCCTAGCTTCCTG 59.039 57.143 0.00 0.00 38.80 3.86
192 193 2.423660 GGCTCTACTCCTAGCTTCCTGA 60.424 54.545 0.00 0.00 38.80 3.86
193 194 3.496331 GCTCTACTCCTAGCTTCCTGAT 58.504 50.000 0.00 0.00 35.80 2.90
194 195 3.506067 GCTCTACTCCTAGCTTCCTGATC 59.494 52.174 0.00 0.00 35.80 2.92
195 196 4.724399 CTCTACTCCTAGCTTCCTGATCA 58.276 47.826 0.00 0.00 0.00 2.92
196 197 4.724399 TCTACTCCTAGCTTCCTGATCAG 58.276 47.826 16.24 16.24 0.00 2.90
197 198 2.038659 ACTCCTAGCTTCCTGATCAGC 58.961 52.381 17.76 6.89 36.16 4.26
198 199 2.037901 CTCCTAGCTTCCTGATCAGCA 58.962 52.381 17.76 0.00 38.61 4.41
199 200 2.036217 CTCCTAGCTTCCTGATCAGCAG 59.964 54.545 17.76 15.22 44.49 4.24
200 201 1.540797 CCTAGCTTCCTGATCAGCAGC 60.541 57.143 26.57 26.57 43.50 5.25
201 202 0.467384 TAGCTTCCTGATCAGCAGCC 59.533 55.000 28.61 17.41 43.50 4.85
202 203 1.224039 GCTTCCTGATCAGCAGCCT 59.776 57.895 24.76 0.00 43.50 4.58
203 204 0.467384 GCTTCCTGATCAGCAGCCTA 59.533 55.000 24.76 5.56 43.50 3.93
204 205 1.809651 GCTTCCTGATCAGCAGCCTAC 60.810 57.143 24.76 6.68 43.50 3.18
205 206 1.761784 CTTCCTGATCAGCAGCCTACT 59.238 52.381 17.76 0.00 43.50 2.57
207 208 0.106335 CCTGATCAGCAGCCTACTGG 59.894 60.000 17.76 0.00 44.63 4.00
217 218 4.928398 CCTACTGGCTGACTGCTG 57.072 61.111 4.20 1.04 42.39 4.41
218 219 2.280835 CCTACTGGCTGACTGCTGA 58.719 57.895 4.20 0.00 42.39 4.26
219 220 0.829333 CCTACTGGCTGACTGCTGAT 59.171 55.000 4.20 0.00 42.39 2.90
220 221 1.202510 CCTACTGGCTGACTGCTGATC 60.203 57.143 4.20 0.00 42.39 2.92
221 222 0.457443 TACTGGCTGACTGCTGATCG 59.543 55.000 4.20 0.00 42.39 3.69
222 223 1.253593 ACTGGCTGACTGCTGATCGA 61.254 55.000 4.20 0.00 42.39 3.59
223 224 0.108472 CTGGCTGACTGCTGATCGAA 60.108 55.000 4.20 0.00 42.39 3.71
224 225 0.538584 TGGCTGACTGCTGATCGAAT 59.461 50.000 4.20 0.00 42.39 3.34
225 226 1.756538 TGGCTGACTGCTGATCGAATA 59.243 47.619 4.20 0.00 42.39 1.75
226 227 2.131183 GGCTGACTGCTGATCGAATAC 58.869 52.381 4.20 0.00 42.39 1.89
227 228 2.223923 GGCTGACTGCTGATCGAATACT 60.224 50.000 4.20 0.00 42.39 2.12
228 229 3.452474 GCTGACTGCTGATCGAATACTT 58.548 45.455 0.00 0.00 38.95 2.24
229 230 3.868077 GCTGACTGCTGATCGAATACTTT 59.132 43.478 0.00 0.00 38.95 2.66
230 231 4.331168 GCTGACTGCTGATCGAATACTTTT 59.669 41.667 0.00 0.00 38.95 2.27
231 232 5.726138 GCTGACTGCTGATCGAATACTTTTG 60.726 44.000 0.00 0.00 38.95 2.44
232 233 5.237815 TGACTGCTGATCGAATACTTTTGT 58.762 37.500 0.00 0.00 0.00 2.83
233 234 5.120674 TGACTGCTGATCGAATACTTTTGTG 59.879 40.000 0.00 0.00 0.00 3.33
234 235 4.997395 ACTGCTGATCGAATACTTTTGTGT 59.003 37.500 0.00 0.00 0.00 3.72
235 236 5.470098 ACTGCTGATCGAATACTTTTGTGTT 59.530 36.000 0.00 0.00 36.45 3.32
236 237 5.688823 TGCTGATCGAATACTTTTGTGTTG 58.311 37.500 0.00 0.00 33.86 3.33
237 238 5.468409 TGCTGATCGAATACTTTTGTGTTGA 59.532 36.000 0.00 0.00 33.86 3.18
238 239 6.017523 TGCTGATCGAATACTTTTGTGTTGAA 60.018 34.615 0.00 0.00 33.86 2.69
239 240 7.023575 GCTGATCGAATACTTTTGTGTTGAAT 58.976 34.615 0.00 0.00 33.86 2.57
240 241 8.175069 GCTGATCGAATACTTTTGTGTTGAATA 58.825 33.333 0.00 0.00 33.86 1.75
244 245 8.722342 TCGAATACTTTTGTGTTGAATAAAGC 57.278 30.769 0.00 0.00 33.86 3.51
245 246 8.564574 TCGAATACTTTTGTGTTGAATAAAGCT 58.435 29.630 0.00 0.00 33.86 3.74
246 247 8.840867 CGAATACTTTTGTGTTGAATAAAGCTC 58.159 33.333 0.00 0.00 33.86 4.09
247 248 9.899226 GAATACTTTTGTGTTGAATAAAGCTCT 57.101 29.630 0.00 0.00 33.86 4.09
248 249 9.899226 AATACTTTTGTGTTGAATAAAGCTCTC 57.101 29.630 0.00 0.00 32.46 3.20
249 250 7.573968 ACTTTTGTGTTGAATAAAGCTCTCT 57.426 32.000 0.00 0.00 32.27 3.10
250 251 7.420800 ACTTTTGTGTTGAATAAAGCTCTCTG 58.579 34.615 0.00 0.00 32.27 3.35
251 252 7.283127 ACTTTTGTGTTGAATAAAGCTCTCTGA 59.717 33.333 0.00 0.00 32.27 3.27
252 253 7.566760 TTTGTGTTGAATAAAGCTCTCTGAA 57.433 32.000 0.00 0.00 0.00 3.02
253 254 6.791887 TGTGTTGAATAAAGCTCTCTGAAG 57.208 37.500 0.00 0.00 0.00 3.02
254 255 6.291377 TGTGTTGAATAAAGCTCTCTGAAGT 58.709 36.000 0.00 0.00 0.00 3.01
255 256 6.767902 TGTGTTGAATAAAGCTCTCTGAAGTT 59.232 34.615 0.00 0.00 0.00 2.66
256 257 7.041780 TGTGTTGAATAAAGCTCTCTGAAGTTC 60.042 37.037 0.00 0.00 0.00 3.01
257 258 6.428159 TGTTGAATAAAGCTCTCTGAAGTTCC 59.572 38.462 0.00 0.00 0.00 3.62
258 259 5.491982 TGAATAAAGCTCTCTGAAGTTCCC 58.508 41.667 0.00 0.00 0.00 3.97
259 260 2.869101 AAAGCTCTCTGAAGTTCCCC 57.131 50.000 0.00 0.00 0.00 4.81
260 261 0.988063 AAGCTCTCTGAAGTTCCCCC 59.012 55.000 0.00 0.00 0.00 5.40
261 262 1.219393 GCTCTCTGAAGTTCCCCCG 59.781 63.158 0.00 0.00 0.00 5.73
262 263 1.258445 GCTCTCTGAAGTTCCCCCGA 61.258 60.000 0.00 0.00 0.00 5.14
263 264 1.267121 CTCTCTGAAGTTCCCCCGAA 58.733 55.000 0.00 0.00 0.00 4.30
264 265 1.623811 CTCTCTGAAGTTCCCCCGAAA 59.376 52.381 0.00 0.00 0.00 3.46
265 266 2.038557 CTCTCTGAAGTTCCCCCGAAAA 59.961 50.000 0.00 0.00 0.00 2.29
266 267 2.440253 TCTCTGAAGTTCCCCCGAAAAA 59.560 45.455 0.00 0.00 0.00 1.94
285 286 2.758648 AAAAAGCACCCACCCATCC 58.241 52.632 0.00 0.00 0.00 3.51
401 416 0.382515 GAAGGATCGACCGAGACAGG 59.617 60.000 0.00 0.00 44.74 4.00
402 417 1.668101 AAGGATCGACCGAGACAGGC 61.668 60.000 0.00 0.00 44.74 4.85
403 418 2.415608 GGATCGACCGAGACAGGCA 61.416 63.158 0.00 0.00 33.69 4.75
405 420 2.615262 GATCGACCGAGACAGGCACC 62.615 65.000 0.00 0.00 33.69 5.01
431 453 2.716969 AGAAGAAGTTTGGCTTACCCCT 59.283 45.455 0.00 0.00 37.59 4.79
515 537 4.873129 CGGCGATGAGACCACCCG 62.873 72.222 0.00 0.00 0.00 5.28
555 586 1.476891 GAATTTTCCTCGCCTTTCCCC 59.523 52.381 0.00 0.00 0.00 4.81
556 587 0.704664 ATTTTCCTCGCCTTTCCCCT 59.295 50.000 0.00 0.00 0.00 4.79
557 588 0.037734 TTTTCCTCGCCTTTCCCCTC 59.962 55.000 0.00 0.00 0.00 4.30
558 589 1.848886 TTTCCTCGCCTTTCCCCTCC 61.849 60.000 0.00 0.00 0.00 4.30
559 590 3.798511 CCTCGCCTTTCCCCTCCC 61.799 72.222 0.00 0.00 0.00 4.30
560 591 3.798511 CTCGCCTTTCCCCTCCCC 61.799 72.222 0.00 0.00 0.00 4.81
608 644 2.018086 CCCCTCCCTCCCTCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
609 645 1.598856 CCCCTCCCTCCCTCTCTCTT 61.599 65.000 0.00 0.00 0.00 2.85
722 789 4.760047 CTCAACTCCCACCCCGCG 62.760 72.222 0.00 0.00 0.00 6.46
744 812 0.036875 CACCAACACCTCCTTCTCCC 59.963 60.000 0.00 0.00 0.00 4.30
745 813 1.134438 ACCAACACCTCCTTCTCCCC 61.134 60.000 0.00 0.00 0.00 4.81
746 814 0.842467 CCAACACCTCCTTCTCCCCT 60.842 60.000 0.00 0.00 0.00 4.79
747 815 0.326264 CAACACCTCCTTCTCCCCTG 59.674 60.000 0.00 0.00 0.00 4.45
803 998 2.160171 CCCTGTTCCTCCCCACCAA 61.160 63.158 0.00 0.00 0.00 3.67
871 1066 3.137360 ACAAATGGCTCCCTAGATCTTCC 59.863 47.826 0.00 0.00 0.00 3.46
872 1067 2.037385 ATGGCTCCCTAGATCTTCCC 57.963 55.000 0.00 0.00 0.00 3.97
878 1073 3.071747 GCTCCCTAGATCTTCCCGAATTT 59.928 47.826 0.00 0.00 0.00 1.82
880 1075 4.557705 TCCCTAGATCTTCCCGAATTTCT 58.442 43.478 0.00 0.00 0.00 2.52
881 1076 4.969359 TCCCTAGATCTTCCCGAATTTCTT 59.031 41.667 0.00 0.00 0.00 2.52
924 1120 1.550524 CAAGATCTCGTGGGTTCTCCA 59.449 52.381 0.00 0.00 44.79 3.86
954 1150 1.971357 ACTGACCGAACCAATCTCTGT 59.029 47.619 0.00 0.00 0.00 3.41
1135 1332 3.563390 GTGAAGTTGCAGCTCTCTTTCTT 59.437 43.478 2.60 0.00 0.00 2.52
1136 1333 3.562973 TGAAGTTGCAGCTCTCTTTCTTG 59.437 43.478 2.60 0.00 0.00 3.02
1141 1338 1.451067 CAGCTCTCTTTCTTGCAGGG 58.549 55.000 0.00 0.00 0.00 4.45
1142 1339 1.063183 AGCTCTCTTTCTTGCAGGGT 58.937 50.000 0.00 0.00 0.00 4.34
1143 1340 1.003003 AGCTCTCTTTCTTGCAGGGTC 59.997 52.381 0.00 0.00 0.00 4.46
1144 1341 1.003003 GCTCTCTTTCTTGCAGGGTCT 59.997 52.381 0.00 0.00 0.00 3.85
1145 1342 2.551938 GCTCTCTTTCTTGCAGGGTCTT 60.552 50.000 0.00 0.00 0.00 3.01
1146 1343 3.307059 GCTCTCTTTCTTGCAGGGTCTTA 60.307 47.826 0.00 0.00 0.00 2.10
1147 1344 4.625083 GCTCTCTTTCTTGCAGGGTCTTAT 60.625 45.833 0.00 0.00 0.00 1.73
1148 1345 5.091261 TCTCTTTCTTGCAGGGTCTTATC 57.909 43.478 0.00 0.00 0.00 1.75
1149 1346 4.780021 TCTCTTTCTTGCAGGGTCTTATCT 59.220 41.667 0.00 0.00 0.00 1.98
1150 1347 4.836825 TCTTTCTTGCAGGGTCTTATCTG 58.163 43.478 0.00 0.00 0.00 2.90
1151 1348 4.287067 TCTTTCTTGCAGGGTCTTATCTGT 59.713 41.667 0.00 0.00 33.81 3.41
1152 1349 5.483937 TCTTTCTTGCAGGGTCTTATCTGTA 59.516 40.000 0.00 0.00 33.81 2.74
1171 1368 6.734137 TCTGTACATGTTTCAACAAATGACC 58.266 36.000 2.30 0.00 43.03 4.02
1188 1386 1.203994 GACCGTCAAGCTAAGCCAGTA 59.796 52.381 0.00 0.00 0.00 2.74
1199 1397 7.229707 TCAAGCTAAGCCAGTAACAAATGTTTA 59.770 33.333 3.85 0.00 39.31 2.01
1202 1400 7.881232 AGCTAAGCCAGTAACAAATGTTTACTA 59.119 33.333 3.85 0.00 39.31 1.82
1254 1604 7.041303 CCATGATCATTCAGTTTGGTGAGATAG 60.041 40.741 5.16 0.00 34.73 2.08
1255 1605 7.186570 TGATCATTCAGTTTGGTGAGATAGA 57.813 36.000 0.00 0.00 0.00 1.98
1256 1606 7.799081 TGATCATTCAGTTTGGTGAGATAGAT 58.201 34.615 0.00 0.00 0.00 1.98
1257 1607 8.927411 TGATCATTCAGTTTGGTGAGATAGATA 58.073 33.333 0.00 0.00 0.00 1.98
1297 1647 7.564793 TCCTCATCTTTCTTTTCCGATGATTA 58.435 34.615 0.00 0.00 40.78 1.75
1308 1658 9.456147 TCTTTTCCGATGATTATTTTTGTCCTA 57.544 29.630 0.00 0.00 0.00 2.94
1312 1662 8.972458 TCCGATGATTATTTTTGTCCTAATGA 57.028 30.769 0.00 0.00 0.00 2.57
1313 1663 9.056005 TCCGATGATTATTTTTGTCCTAATGAG 57.944 33.333 0.00 0.00 0.00 2.90
1314 1664 8.840321 CCGATGATTATTTTTGTCCTAATGAGT 58.160 33.333 0.00 0.00 0.00 3.41
1365 1717 9.790344 ACTAATGGATCCATCTAAGAAATTGAG 57.210 33.333 27.45 7.54 35.31 3.02
1435 1787 4.009675 TCGCAAGCTTTGGTGATAAATCT 58.990 39.130 0.00 0.00 37.18 2.40
1532 1884 2.281484 GGGCGTGAAGGCTGTCAA 60.281 61.111 0.00 0.00 45.89 3.18
1611 1963 0.961857 GCATGCAGGATGACACCACA 60.962 55.000 14.21 0.00 39.69 4.17
1857 2209 2.754946 CCGTCAGGGTAAGTTTAGCA 57.245 50.000 3.80 0.00 33.00 3.49
1905 2259 3.567478 AGTGGATCCTTGCCTGTTATC 57.433 47.619 14.23 0.00 0.00 1.75
2007 2361 2.057137 TAGCCATGGGTGCTTCATTC 57.943 50.000 26.70 0.00 40.23 2.67
2211 2565 5.533154 TCAGGTTGGTATTTGTGGTTTGTAG 59.467 40.000 0.00 0.00 0.00 2.74
2369 2725 1.463674 CCATTCCCACCTTTTCCTCG 58.536 55.000 0.00 0.00 0.00 4.63
2596 2956 2.558359 AGTGCTAAATTTGCAGGTCACC 59.442 45.455 13.32 0.00 41.41 4.02
2655 3015 4.021981 ACAAGCTGGACCTAATTTTTGCTC 60.022 41.667 0.00 0.00 0.00 4.26
2696 3056 4.099266 TCCTTTGGTTTCAAACACATCCAG 59.901 41.667 1.93 0.00 37.89 3.86
2699 3059 3.826524 TGGTTTCAAACACATCCAGCTA 58.173 40.909 1.93 0.00 0.00 3.32
2700 3060 4.211125 TGGTTTCAAACACATCCAGCTAA 58.789 39.130 1.93 0.00 0.00 3.09
2734 3094 2.901042 GAGTTACCCCAGGAGCCG 59.099 66.667 0.00 0.00 0.00 5.52
2805 3165 3.215975 ACTCGCACCTCCTATTAGAGTC 58.784 50.000 0.00 0.00 32.77 3.36
2884 3244 3.991773 TCTTTTGTTACGGAGTGGATTCG 59.008 43.478 0.00 0.00 45.73 3.34
2910 3270 2.616842 ACACCAAAGCTCAAAAGGTACG 59.383 45.455 0.00 0.00 31.54 3.67
2934 3294 7.606456 ACGTCAACTGTAATTCTTACATCCAAT 59.394 33.333 0.56 0.00 44.46 3.16
3276 3636 4.735822 CGACACGTCCTCTGATTTATCTTC 59.264 45.833 0.00 0.00 0.00 2.87
3519 3879 9.082313 ACATGTTGATCTCAGTTCCTTTAATTT 57.918 29.630 0.00 0.00 0.00 1.82
3829 4190 2.833794 TCAACTGAAGAAACGTGGAGG 58.166 47.619 0.00 0.00 0.00 4.30
4240 4601 3.999001 GCACTGTCTGACATCATTGAGAA 59.001 43.478 11.45 0.00 0.00 2.87
4648 5011 2.051334 TATCATGGAGTTTTGGGGCG 57.949 50.000 0.00 0.00 0.00 6.13
4898 7329 3.261643 AGGACTGCAGATGATTGTACACA 59.738 43.478 23.35 0.00 0.00 3.72
4920 7351 3.007182 ACTGGTTTGATTTGAATGGCCAG 59.993 43.478 13.05 0.00 45.43 4.85
4926 7357 3.091545 TGATTTGAATGGCCAGACTTCC 58.908 45.455 13.05 0.00 0.00 3.46
4927 7358 2.673775 TTTGAATGGCCAGACTTCCA 57.326 45.000 13.05 0.00 36.70 3.53
4928 7359 2.905415 TTGAATGGCCAGACTTCCAT 57.095 45.000 13.05 1.09 44.46 3.41
4930 7361 1.634973 TGAATGGCCAGACTTCCATCA 59.365 47.619 13.05 2.53 41.92 3.07
4931 7362 2.041485 TGAATGGCCAGACTTCCATCAA 59.959 45.455 13.05 0.00 41.92 2.57
4991 7475 5.769662 ACTTTTTGACCAATATGTCTGCTGA 59.230 36.000 0.00 0.00 36.21 4.26
4998 7482 6.604396 TGACCAATATGTCTGCTGATGAAAAT 59.396 34.615 0.00 0.00 36.21 1.82
4999 7483 7.774625 TGACCAATATGTCTGCTGATGAAAATA 59.225 33.333 0.00 0.00 36.21 1.40
5001 7485 8.573885 ACCAATATGTCTGCTGATGAAAATATG 58.426 33.333 0.00 0.00 0.00 1.78
5011 7513 9.234384 CTGCTGATGAAAATATGAAGATCAAAC 57.766 33.333 0.00 0.00 0.00 2.93
5026 7528 3.423539 TCAAACTTGATACTGGCTGCT 57.576 42.857 0.00 0.00 31.01 4.24
5027 7529 4.551702 TCAAACTTGATACTGGCTGCTA 57.448 40.909 0.00 0.00 31.01 3.49
5028 7530 4.905429 TCAAACTTGATACTGGCTGCTAA 58.095 39.130 0.00 0.00 31.01 3.09
5029 7531 5.500234 TCAAACTTGATACTGGCTGCTAAT 58.500 37.500 0.00 0.00 31.01 1.73
5030 7532 6.649155 TCAAACTTGATACTGGCTGCTAATA 58.351 36.000 0.00 0.00 31.01 0.98
5074 7576 9.646522 ATTGATTTGTACTTTATTCCTATGCCT 57.353 29.630 0.00 0.00 0.00 4.75
5124 7628 8.593945 AGCCTTTTTAGATATTTGAACATGGA 57.406 30.769 0.00 0.00 0.00 3.41
5125 7629 8.470002 AGCCTTTTTAGATATTTGAACATGGAC 58.530 33.333 0.00 0.00 0.00 4.02
5126 7630 8.470002 GCCTTTTTAGATATTTGAACATGGACT 58.530 33.333 0.00 0.00 0.00 3.85
5134 7638 9.770097 AGATATTTGAACATGGACTACATACAG 57.230 33.333 0.00 0.00 37.84 2.74
5192 7932 6.048732 TCATTTTGCTCTGTATGTAGTCCA 57.951 37.500 0.00 0.00 0.00 4.02
5312 9391 5.944599 TCTTGAACGACTAGGAGTACTTCAT 59.055 40.000 3.42 0.00 0.00 2.57
5350 9430 2.092968 TGGAAGTCTGAGCACAACAGTT 60.093 45.455 0.00 0.00 36.81 3.16
5398 9478 7.930325 TGCATGAAATACTTTGTCCAAAATGAA 59.070 29.630 0.00 0.00 0.00 2.57
5399 9479 8.772705 GCATGAAATACTTTGTCCAAAATGAAA 58.227 29.630 0.00 0.00 0.00 2.69
5466 9568 2.646930 GTGGATGATGAGTTGATGGCA 58.353 47.619 0.00 0.00 0.00 4.92
5487 9589 3.967332 AAAACCATGAATGCCAGGAAG 57.033 42.857 0.00 0.00 0.00 3.46
5488 9590 2.905415 AACCATGAATGCCAGGAAGA 57.095 45.000 0.00 0.00 0.00 2.87
5489 9591 3.393426 AACCATGAATGCCAGGAAGAT 57.607 42.857 0.00 0.00 0.00 2.40
5490 9592 4.524802 AACCATGAATGCCAGGAAGATA 57.475 40.909 0.00 0.00 0.00 1.98
5491 9593 4.736611 ACCATGAATGCCAGGAAGATAT 57.263 40.909 0.00 0.00 0.00 1.63
5492 9594 4.404640 ACCATGAATGCCAGGAAGATATG 58.595 43.478 0.00 0.00 0.00 1.78
5516 9619 4.499696 GCCATATAGCTGTTCGCCATTTTT 60.500 41.667 0.00 0.00 40.39 1.94
5525 9628 0.972883 TCGCCATTTTTGGGAAAGGG 59.027 50.000 0.00 0.00 0.00 3.95
5528 9631 1.337728 GCCATTTTTGGGAAAGGGTCG 60.338 52.381 4.42 0.00 0.00 4.79
5531 9634 1.324383 TTTTTGGGAAAGGGTCGCTC 58.676 50.000 0.00 0.00 39.89 5.03
5542 9645 1.446366 GGTCGCTCCCCCAGTTATC 59.554 63.158 0.00 0.00 0.00 1.75
5545 9648 0.469331 TCGCTCCCCCAGTTATCGAT 60.469 55.000 2.16 2.16 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.456221 ACCGGTCGATGTAGCAAGAG 59.544 55.000 0.00 0.00 0.00 2.85
2 3 0.454600 GACCGGTCGATGTAGCAAGA 59.545 55.000 20.85 0.00 0.00 3.02
3 4 2.959275 GACCGGTCGATGTAGCAAG 58.041 57.895 20.85 0.00 0.00 4.01
23 24 5.086104 TCAGAAAGAATAGGTGCTACCAC 57.914 43.478 7.86 0.00 41.95 4.16
24 25 5.755409 TTCAGAAAGAATAGGTGCTACCA 57.245 39.130 7.86 0.00 41.95 3.25
25 26 7.415653 CCAATTTCAGAAAGAATAGGTGCTACC 60.416 40.741 1.28 0.00 35.63 3.18
26 27 7.336931 TCCAATTTCAGAAAGAATAGGTGCTAC 59.663 37.037 1.28 0.00 35.83 3.58
27 28 7.402054 TCCAATTTCAGAAAGAATAGGTGCTA 58.598 34.615 1.28 0.00 35.83 3.49
28 29 6.248433 TCCAATTTCAGAAAGAATAGGTGCT 58.752 36.000 1.28 0.00 35.83 4.40
29 30 6.375455 TCTCCAATTTCAGAAAGAATAGGTGC 59.625 38.462 1.28 0.00 35.83 5.01
30 31 7.414984 GCTCTCCAATTTCAGAAAGAATAGGTG 60.415 40.741 1.28 1.02 35.83 4.00
31 32 6.601217 GCTCTCCAATTTCAGAAAGAATAGGT 59.399 38.462 1.28 0.00 35.83 3.08
32 33 6.827762 AGCTCTCCAATTTCAGAAAGAATAGG 59.172 38.462 1.28 0.00 35.83 2.57
33 34 7.862512 AGCTCTCCAATTTCAGAAAGAATAG 57.137 36.000 1.28 0.00 35.83 1.73
34 35 7.362401 GCAAGCTCTCCAATTTCAGAAAGAATA 60.362 37.037 1.28 0.00 35.83 1.75
35 36 6.571925 GCAAGCTCTCCAATTTCAGAAAGAAT 60.572 38.462 1.28 0.00 35.83 2.40
36 37 5.278660 GCAAGCTCTCCAATTTCAGAAAGAA 60.279 40.000 1.28 0.00 0.00 2.52
37 38 4.217118 GCAAGCTCTCCAATTTCAGAAAGA 59.783 41.667 1.28 0.00 0.00 2.52
38 39 4.217983 AGCAAGCTCTCCAATTTCAGAAAG 59.782 41.667 1.28 0.00 0.00 2.62
39 40 4.147321 AGCAAGCTCTCCAATTTCAGAAA 58.853 39.130 0.00 0.00 0.00 2.52
40 41 3.755378 GAGCAAGCTCTCCAATTTCAGAA 59.245 43.478 14.52 0.00 39.80 3.02
41 42 3.341823 GAGCAAGCTCTCCAATTTCAGA 58.658 45.455 14.52 0.00 39.80 3.27
42 43 3.761311 GAGCAAGCTCTCCAATTTCAG 57.239 47.619 14.52 0.00 39.80 3.02
53 54 7.841915 AGAGATAAAACTAAAGAGCAAGCTC 57.158 36.000 14.00 14.00 43.03 4.09
54 55 8.628630 AAAGAGATAAAACTAAAGAGCAAGCT 57.371 30.769 0.00 0.00 0.00 3.74
55 56 8.507249 TGAAAGAGATAAAACTAAAGAGCAAGC 58.493 33.333 0.00 0.00 0.00 4.01
84 85 9.793252 GTTTGCTGATCTTATTACATGTTGAAT 57.207 29.630 2.30 0.77 0.00 2.57
85 86 7.962373 CGTTTGCTGATCTTATTACATGTTGAA 59.038 33.333 2.30 0.00 0.00 2.69
86 87 7.413988 CCGTTTGCTGATCTTATTACATGTTGA 60.414 37.037 2.30 0.00 0.00 3.18
87 88 6.688385 CCGTTTGCTGATCTTATTACATGTTG 59.312 38.462 2.30 0.00 0.00 3.33
88 89 6.374333 ACCGTTTGCTGATCTTATTACATGTT 59.626 34.615 2.30 0.00 0.00 2.71
89 90 5.880332 ACCGTTTGCTGATCTTATTACATGT 59.120 36.000 2.69 2.69 0.00 3.21
90 91 6.363577 ACCGTTTGCTGATCTTATTACATG 57.636 37.500 0.00 0.00 0.00 3.21
91 92 6.823689 AGAACCGTTTGCTGATCTTATTACAT 59.176 34.615 0.00 0.00 0.00 2.29
92 93 6.092122 CAGAACCGTTTGCTGATCTTATTACA 59.908 38.462 0.00 0.00 0.00 2.41
93 94 6.478588 CAGAACCGTTTGCTGATCTTATTAC 58.521 40.000 0.00 0.00 0.00 1.89
94 95 5.064707 GCAGAACCGTTTGCTGATCTTATTA 59.935 40.000 4.54 0.00 37.35 0.98
95 96 4.142600 GCAGAACCGTTTGCTGATCTTATT 60.143 41.667 4.54 0.00 37.35 1.40
96 97 3.375299 GCAGAACCGTTTGCTGATCTTAT 59.625 43.478 4.54 0.00 37.35 1.73
97 98 2.742053 GCAGAACCGTTTGCTGATCTTA 59.258 45.455 4.54 0.00 37.35 2.10
98 99 1.537202 GCAGAACCGTTTGCTGATCTT 59.463 47.619 4.54 0.00 37.35 2.40
99 100 1.160137 GCAGAACCGTTTGCTGATCT 58.840 50.000 4.54 0.00 37.35 2.75
100 101 0.874390 TGCAGAACCGTTTGCTGATC 59.126 50.000 15.03 0.00 40.87 2.92
101 102 0.593128 GTGCAGAACCGTTTGCTGAT 59.407 50.000 15.03 0.00 40.87 2.90
102 103 0.746204 TGTGCAGAACCGTTTGCTGA 60.746 50.000 15.03 4.26 40.87 4.26
103 104 0.311790 ATGTGCAGAACCGTTTGCTG 59.688 50.000 15.03 7.47 40.87 4.41
104 105 0.593128 GATGTGCAGAACCGTTTGCT 59.407 50.000 15.03 0.00 40.87 3.91
105 106 0.593128 AGATGTGCAGAACCGTTTGC 59.407 50.000 9.94 9.94 40.67 3.68
106 107 1.603802 ACAGATGTGCAGAACCGTTTG 59.396 47.619 0.00 0.00 0.00 2.93
107 108 1.603802 CACAGATGTGCAGAACCGTTT 59.396 47.619 0.00 0.00 39.39 3.60
108 109 1.229428 CACAGATGTGCAGAACCGTT 58.771 50.000 0.00 0.00 39.39 4.44
109 110 2.918571 CACAGATGTGCAGAACCGT 58.081 52.632 0.00 0.00 39.39 4.83
119 120 1.432514 CACGCTTAGCACACAGATGT 58.567 50.000 4.70 0.00 40.80 3.06
120 121 0.723414 CCACGCTTAGCACACAGATG 59.277 55.000 4.70 0.00 0.00 2.90
121 122 1.021390 GCCACGCTTAGCACACAGAT 61.021 55.000 4.70 0.00 0.00 2.90
122 123 1.667830 GCCACGCTTAGCACACAGA 60.668 57.895 4.70 0.00 0.00 3.41
123 124 1.630244 GAGCCACGCTTAGCACACAG 61.630 60.000 4.70 0.00 39.88 3.66
124 125 1.667830 GAGCCACGCTTAGCACACA 60.668 57.895 4.70 0.00 39.88 3.72
125 126 0.108804 TAGAGCCACGCTTAGCACAC 60.109 55.000 4.70 0.00 39.88 3.82
126 127 0.108804 GTAGAGCCACGCTTAGCACA 60.109 55.000 4.70 0.00 39.88 4.57
127 128 1.140407 CGTAGAGCCACGCTTAGCAC 61.140 60.000 4.70 0.00 39.88 4.40
128 129 1.138883 CGTAGAGCCACGCTTAGCA 59.861 57.895 4.70 0.00 39.88 3.49
129 130 3.999051 CGTAGAGCCACGCTTAGC 58.001 61.111 0.00 0.00 39.88 3.09
140 141 5.236655 TCTCAGTCACATTAAGCGTAGAG 57.763 43.478 0.00 0.00 0.00 2.43
141 142 4.438880 GCTCTCAGTCACATTAAGCGTAGA 60.439 45.833 0.00 0.00 0.00 2.59
142 143 3.794028 GCTCTCAGTCACATTAAGCGTAG 59.206 47.826 0.00 0.00 0.00 3.51
143 144 3.444034 AGCTCTCAGTCACATTAAGCGTA 59.556 43.478 0.00 0.00 33.62 4.42
144 145 2.232452 AGCTCTCAGTCACATTAAGCGT 59.768 45.455 0.00 0.00 33.62 5.07
145 146 2.602211 CAGCTCTCAGTCACATTAAGCG 59.398 50.000 0.00 0.00 33.62 4.68
146 147 2.935201 CCAGCTCTCAGTCACATTAAGC 59.065 50.000 0.00 0.00 0.00 3.09
147 148 4.199432 ACCAGCTCTCAGTCACATTAAG 57.801 45.455 0.00 0.00 0.00 1.85
148 149 4.623932 AACCAGCTCTCAGTCACATTAA 57.376 40.909 0.00 0.00 0.00 1.40
149 150 4.160439 CCTAACCAGCTCTCAGTCACATTA 59.840 45.833 0.00 0.00 0.00 1.90
150 151 3.055530 CCTAACCAGCTCTCAGTCACATT 60.056 47.826 0.00 0.00 0.00 2.71
151 152 2.499289 CCTAACCAGCTCTCAGTCACAT 59.501 50.000 0.00 0.00 0.00 3.21
152 153 1.895798 CCTAACCAGCTCTCAGTCACA 59.104 52.381 0.00 0.00 0.00 3.58
153 154 1.404851 GCCTAACCAGCTCTCAGTCAC 60.405 57.143 0.00 0.00 0.00 3.67
154 155 0.898320 GCCTAACCAGCTCTCAGTCA 59.102 55.000 0.00 0.00 0.00 3.41
155 156 1.190643 AGCCTAACCAGCTCTCAGTC 58.809 55.000 0.00 0.00 34.91 3.51
156 157 3.390280 AGCCTAACCAGCTCTCAGT 57.610 52.632 0.00 0.00 34.91 3.41
162 163 1.289530 AGGAGTAGAGCCTAACCAGCT 59.710 52.381 0.00 0.00 45.23 4.24
163 164 1.783071 AGGAGTAGAGCCTAACCAGC 58.217 55.000 0.00 0.00 32.92 4.85
164 165 2.888414 GCTAGGAGTAGAGCCTAACCAG 59.112 54.545 0.00 0.00 37.54 4.00
165 166 2.514582 AGCTAGGAGTAGAGCCTAACCA 59.485 50.000 0.00 0.00 39.65 3.67
166 167 3.232720 AGCTAGGAGTAGAGCCTAACC 57.767 52.381 0.00 0.00 39.65 2.85
167 168 3.570975 GGAAGCTAGGAGTAGAGCCTAAC 59.429 52.174 0.00 0.00 39.65 2.34
168 169 3.464080 AGGAAGCTAGGAGTAGAGCCTAA 59.536 47.826 0.00 0.00 39.65 2.69
169 170 3.057586 AGGAAGCTAGGAGTAGAGCCTA 58.942 50.000 0.00 0.00 39.65 3.93
170 171 1.856920 AGGAAGCTAGGAGTAGAGCCT 59.143 52.381 0.00 0.00 39.65 4.58
171 172 1.960689 CAGGAAGCTAGGAGTAGAGCC 59.039 57.143 0.00 0.00 39.65 4.70
172 173 2.938838 TCAGGAAGCTAGGAGTAGAGC 58.061 52.381 0.00 0.00 39.08 4.09
173 174 4.724399 TGATCAGGAAGCTAGGAGTAGAG 58.276 47.826 0.00 0.00 0.00 2.43
174 175 4.724399 CTGATCAGGAAGCTAGGAGTAGA 58.276 47.826 15.38 0.00 0.00 2.59
175 176 3.255642 GCTGATCAGGAAGCTAGGAGTAG 59.744 52.174 23.89 0.00 36.47 2.57
176 177 3.226777 GCTGATCAGGAAGCTAGGAGTA 58.773 50.000 23.89 0.00 36.47 2.59
177 178 2.038659 GCTGATCAGGAAGCTAGGAGT 58.961 52.381 23.89 0.00 36.47 3.85
178 179 2.036217 CTGCTGATCAGGAAGCTAGGAG 59.964 54.545 23.89 3.25 40.21 3.69
179 180 2.037901 CTGCTGATCAGGAAGCTAGGA 58.962 52.381 23.89 0.00 40.21 2.94
180 181 1.540797 GCTGCTGATCAGGAAGCTAGG 60.541 57.143 23.89 9.46 43.06 3.02
181 182 1.540797 GGCTGCTGATCAGGAAGCTAG 60.541 57.143 25.72 14.32 43.06 3.42
182 183 0.467384 GGCTGCTGATCAGGAAGCTA 59.533 55.000 25.72 7.30 43.06 3.32
183 184 1.224039 GGCTGCTGATCAGGAAGCT 59.776 57.895 25.72 0.00 43.06 3.74
184 185 0.467384 TAGGCTGCTGATCAGGAAGC 59.533 55.000 23.89 22.64 43.06 3.86
185 186 1.761784 AGTAGGCTGCTGATCAGGAAG 59.238 52.381 23.89 15.27 43.06 3.46
186 187 1.483827 CAGTAGGCTGCTGATCAGGAA 59.516 52.381 26.05 3.43 43.06 3.36
187 188 1.117994 CAGTAGGCTGCTGATCAGGA 58.882 55.000 26.05 20.40 43.06 3.86
188 189 0.106335 CCAGTAGGCTGCTGATCAGG 59.894 60.000 30.72 12.39 43.06 3.86
189 190 3.682766 CCAGTAGGCTGCTGATCAG 57.317 57.895 30.72 18.84 45.62 2.90
207 208 3.090952 AGTATTCGATCAGCAGTCAGC 57.909 47.619 0.00 0.00 46.19 4.26
208 209 5.349817 ACAAAAGTATTCGATCAGCAGTCAG 59.650 40.000 0.00 0.00 0.00 3.51
209 210 5.120674 CACAAAAGTATTCGATCAGCAGTCA 59.879 40.000 0.00 0.00 0.00 3.41
210 211 5.120830 ACACAAAAGTATTCGATCAGCAGTC 59.879 40.000 0.00 0.00 0.00 3.51
211 212 4.997395 ACACAAAAGTATTCGATCAGCAGT 59.003 37.500 0.00 0.00 0.00 4.40
212 213 5.536554 ACACAAAAGTATTCGATCAGCAG 57.463 39.130 0.00 0.00 0.00 4.24
213 214 5.468409 TCAACACAAAAGTATTCGATCAGCA 59.532 36.000 0.00 0.00 0.00 4.41
214 215 5.927030 TCAACACAAAAGTATTCGATCAGC 58.073 37.500 0.00 0.00 0.00 4.26
218 219 9.341899 GCTTTATTCAACACAAAAGTATTCGAT 57.658 29.630 0.00 0.00 32.70 3.59
219 220 8.564574 AGCTTTATTCAACACAAAAGTATTCGA 58.435 29.630 0.00 0.00 32.70 3.71
220 221 8.728088 AGCTTTATTCAACACAAAAGTATTCG 57.272 30.769 0.00 0.00 32.70 3.34
221 222 9.899226 AGAGCTTTATTCAACACAAAAGTATTC 57.101 29.630 0.00 0.00 32.70 1.75
222 223 9.899226 GAGAGCTTTATTCAACACAAAAGTATT 57.101 29.630 0.00 0.00 32.70 1.89
223 224 9.289782 AGAGAGCTTTATTCAACACAAAAGTAT 57.710 29.630 0.00 0.00 32.70 2.12
224 225 8.559536 CAGAGAGCTTTATTCAACACAAAAGTA 58.440 33.333 0.00 0.00 32.70 2.24
225 226 7.283127 TCAGAGAGCTTTATTCAACACAAAAGT 59.717 33.333 0.00 0.00 32.70 2.66
226 227 7.642669 TCAGAGAGCTTTATTCAACACAAAAG 58.357 34.615 0.00 0.00 33.15 2.27
227 228 7.566760 TCAGAGAGCTTTATTCAACACAAAA 57.433 32.000 0.00 0.00 0.00 2.44
228 229 7.283127 ACTTCAGAGAGCTTTATTCAACACAAA 59.717 33.333 0.00 0.00 0.00 2.83
229 230 6.767902 ACTTCAGAGAGCTTTATTCAACACAA 59.232 34.615 0.00 0.00 0.00 3.33
230 231 6.291377 ACTTCAGAGAGCTTTATTCAACACA 58.709 36.000 0.00 0.00 0.00 3.72
231 232 6.793492 ACTTCAGAGAGCTTTATTCAACAC 57.207 37.500 0.00 0.00 0.00 3.32
232 233 6.428159 GGAACTTCAGAGAGCTTTATTCAACA 59.572 38.462 0.00 0.00 0.00 3.33
233 234 6.128145 GGGAACTTCAGAGAGCTTTATTCAAC 60.128 42.308 0.00 0.00 0.00 3.18
234 235 5.940470 GGGAACTTCAGAGAGCTTTATTCAA 59.060 40.000 0.00 0.00 0.00 2.69
235 236 5.491982 GGGAACTTCAGAGAGCTTTATTCA 58.508 41.667 0.00 0.00 0.00 2.57
236 237 4.878971 GGGGAACTTCAGAGAGCTTTATTC 59.121 45.833 0.00 0.00 0.00 1.75
237 238 4.324641 GGGGGAACTTCAGAGAGCTTTATT 60.325 45.833 0.00 0.00 0.00 1.40
238 239 3.201045 GGGGGAACTTCAGAGAGCTTTAT 59.799 47.826 0.00 0.00 0.00 1.40
239 240 2.572104 GGGGGAACTTCAGAGAGCTTTA 59.428 50.000 0.00 0.00 0.00 1.85
240 241 1.352687 GGGGGAACTTCAGAGAGCTTT 59.647 52.381 0.00 0.00 0.00 3.51
241 242 0.988063 GGGGGAACTTCAGAGAGCTT 59.012 55.000 0.00 0.00 0.00 3.74
242 243 1.261238 CGGGGGAACTTCAGAGAGCT 61.261 60.000 0.00 0.00 0.00 4.09
243 244 1.219393 CGGGGGAACTTCAGAGAGC 59.781 63.158 0.00 0.00 0.00 4.09
244 245 1.267121 TTCGGGGGAACTTCAGAGAG 58.733 55.000 0.00 0.00 0.00 3.20
245 246 1.724545 TTTCGGGGGAACTTCAGAGA 58.275 50.000 0.00 0.00 0.00 3.10
246 247 2.561478 TTTTCGGGGGAACTTCAGAG 57.439 50.000 0.00 0.00 0.00 3.35
267 268 0.835971 GGGATGGGTGGGTGCTTTTT 60.836 55.000 0.00 0.00 0.00 1.94
268 269 1.229177 GGGATGGGTGGGTGCTTTT 60.229 57.895 0.00 0.00 0.00 2.27
269 270 1.739608 AAGGGATGGGTGGGTGCTTT 61.740 55.000 0.00 0.00 0.00 3.51
270 271 2.155197 GAAGGGATGGGTGGGTGCTT 62.155 60.000 0.00 0.00 0.00 3.91
315 316 3.330720 CACCCCTCCCTCCACCAC 61.331 72.222 0.00 0.00 0.00 4.16
401 416 3.796844 GCCAAACTTCTTCTTTCAGGTGC 60.797 47.826 0.00 0.00 0.00 5.01
402 417 3.633986 AGCCAAACTTCTTCTTTCAGGTG 59.366 43.478 0.00 0.00 0.00 4.00
403 418 3.903467 AGCCAAACTTCTTCTTTCAGGT 58.097 40.909 0.00 0.00 0.00 4.00
405 420 5.278512 GGGTAAGCCAAACTTCTTCTTTCAG 60.279 44.000 0.00 0.00 39.97 3.02
448 470 8.230472 TCTTTCTTCTTTCAGATGCTTTCTTT 57.770 30.769 0.00 0.00 29.93 2.52
449 471 7.814264 TCTTTCTTCTTTCAGATGCTTTCTT 57.186 32.000 0.00 0.00 29.93 2.52
450 472 7.814264 TTCTTTCTTCTTTCAGATGCTTTCT 57.186 32.000 0.00 0.00 33.90 2.52
451 473 7.481169 CGATTCTTTCTTCTTTCAGATGCTTTC 59.519 37.037 0.00 0.00 0.00 2.62
533 564 1.810755 GGAAAGGCGAGGAAAATTCGT 59.189 47.619 0.00 0.00 40.08 3.85
534 565 1.132453 GGGAAAGGCGAGGAAAATTCG 59.868 52.381 0.00 0.00 40.85 3.34
555 586 0.690762 TGAACGAAAAGGGAGGGGAG 59.309 55.000 0.00 0.00 0.00 4.30
556 587 1.142060 TTGAACGAAAAGGGAGGGGA 58.858 50.000 0.00 0.00 0.00 4.81
557 588 2.215942 ATTGAACGAAAAGGGAGGGG 57.784 50.000 0.00 0.00 0.00 4.79
558 589 3.421844 AGAATTGAACGAAAAGGGAGGG 58.578 45.455 0.00 0.00 0.00 4.30
559 590 5.453567 AAAGAATTGAACGAAAAGGGAGG 57.546 39.130 0.00 0.00 0.00 4.30
560 591 5.461526 GGAAAGAATTGAACGAAAAGGGAG 58.538 41.667 0.00 0.00 0.00 4.30
593 629 1.691163 GGGAAAGAGAGAGGGAGGGAG 60.691 61.905 0.00 0.00 0.00 4.30
594 630 0.340208 GGGAAAGAGAGAGGGAGGGA 59.660 60.000 0.00 0.00 0.00 4.20
597 633 2.666317 GAGAGGGAAAGAGAGAGGGAG 58.334 57.143 0.00 0.00 0.00 4.30
598 634 1.064314 CGAGAGGGAAAGAGAGAGGGA 60.064 57.143 0.00 0.00 0.00 4.20
603 639 1.819905 GGGCGAGAGGGAAAGAGAG 59.180 63.158 0.00 0.00 0.00 3.20
626 662 2.124693 GGAGGAGAGGGAGACAGCG 61.125 68.421 0.00 0.00 0.00 5.18
632 668 3.522731 CGTGCGGAGGAGAGGGAG 61.523 72.222 0.00 0.00 0.00 4.30
722 789 0.398318 AGAAGGAGGTGTTGGTGCTC 59.602 55.000 0.00 0.00 0.00 4.26
726 794 1.134438 GGGGAGAAGGAGGTGTTGGT 61.134 60.000 0.00 0.00 0.00 3.67
730 798 1.920835 GCAGGGGAGAAGGAGGTGT 60.921 63.158 0.00 0.00 0.00 4.16
744 812 2.441532 CTCCCAATGGCAGGCAGG 60.442 66.667 1.89 0.00 0.00 4.85
745 813 3.145551 GCTCCCAATGGCAGGCAG 61.146 66.667 1.89 0.00 0.00 4.85
746 814 3.982111 TGCTCCCAATGGCAGGCA 61.982 61.111 0.00 0.00 34.22 4.75
747 815 3.455469 GTGCTCCCAATGGCAGGC 61.455 66.667 0.00 0.00 39.22 4.85
803 998 2.131294 GATCTGATCGCGCCCGTAGT 62.131 60.000 0.00 0.00 35.54 2.73
843 1038 0.630673 AGGGAGCCATTTGTGCCATA 59.369 50.000 0.00 0.00 0.00 2.74
887 1082 4.981806 TCTTGGCATGGTAGCAATAAAC 57.018 40.909 0.00 0.00 35.83 2.01
897 1093 0.107508 CCACGAGATCTTGGCATGGT 60.108 55.000 14.65 0.00 0.00 3.55
1135 1332 3.774766 ACATGTACAGATAAGACCCTGCA 59.225 43.478 0.00 0.00 33.90 4.41
1136 1333 4.408182 ACATGTACAGATAAGACCCTGC 57.592 45.455 0.00 0.00 33.90 4.85
1144 1341 9.891828 GTCATTTGTTGAAACATGTACAGATAA 57.108 29.630 0.00 0.00 38.95 1.75
1145 1342 8.511321 GGTCATTTGTTGAAACATGTACAGATA 58.489 33.333 0.00 0.00 38.95 1.98
1146 1343 7.370383 GGTCATTTGTTGAAACATGTACAGAT 58.630 34.615 0.00 0.00 38.95 2.90
1147 1344 6.512578 CGGTCATTTGTTGAAACATGTACAGA 60.513 38.462 0.00 0.00 38.95 3.41
1148 1345 5.624900 CGGTCATTTGTTGAAACATGTACAG 59.375 40.000 0.00 0.00 38.95 2.74
1149 1346 5.066634 ACGGTCATTTGTTGAAACATGTACA 59.933 36.000 0.00 0.00 38.95 2.90
1150 1347 5.516090 ACGGTCATTTGTTGAAACATGTAC 58.484 37.500 0.00 0.00 38.95 2.90
1151 1348 5.297029 TGACGGTCATTTGTTGAAACATGTA 59.703 36.000 6.76 0.00 38.95 2.29
1152 1349 4.097135 TGACGGTCATTTGTTGAAACATGT 59.903 37.500 6.76 0.00 38.95 3.21
1169 1366 1.263356 TACTGGCTTAGCTTGACGGT 58.737 50.000 3.59 10.88 35.92 4.83
1171 1368 2.683968 TGTTACTGGCTTAGCTTGACG 58.316 47.619 3.59 0.00 0.00 4.35
1199 1397 9.297037 GGCCATGGAATTACTTATTGTTATAGT 57.703 33.333 18.40 0.00 0.00 2.12
1202 1400 7.255942 GCAGGCCATGGAATTACTTATTGTTAT 60.256 37.037 18.40 0.00 0.00 1.89
1206 1509 4.262164 GGCAGGCCATGGAATTACTTATTG 60.262 45.833 18.40 0.00 35.81 1.90
1257 1607 9.183368 GAAAGATGAGGAATTAAGAAGGTGAAT 57.817 33.333 0.00 0.00 0.00 2.57
1339 1691 9.790344 CTCAATTTCTTAGATGGATCCATTAGT 57.210 33.333 27.93 17.50 36.70 2.24
1365 1717 5.009310 CCAACTGGTAGGTTTTAACAGGTTC 59.991 44.000 4.46 0.00 33.63 3.62
1435 1787 2.890311 ACAATGAAGACCGGCATTTCAA 59.110 40.909 16.67 4.62 34.80 2.69
1551 1903 1.376553 GGAGCTGAACCTGTGCCTC 60.377 63.158 0.00 0.00 0.00 4.70
1611 1963 6.417044 CGATAACCACGAAATCGAAGTATCTT 59.583 38.462 10.16 0.00 43.96 2.40
1876 2230 3.549794 GCAAGGATCCACTAGAAGCAAT 58.450 45.455 15.82 0.00 0.00 3.56
1905 2259 3.074412 AGCAACCAAGAGTTATGAACCG 58.926 45.455 0.00 0.00 36.18 4.44
2007 2361 0.392863 TGCCATCTTCACCATGGTCG 60.393 55.000 16.53 11.15 42.68 4.79
2369 2725 7.913297 TGATTTTGTTGCTTGTTAAGTCACTAC 59.087 33.333 0.00 0.00 0.00 2.73
2506 2862 3.417101 ACATTTGGAAGCCGACAACATA 58.583 40.909 0.00 0.00 0.00 2.29
2596 2956 7.112984 GTCCAGCACGTGTAAAAATAGAAAAAG 59.887 37.037 18.38 0.00 0.00 2.27
2655 3015 7.092716 CCAAAGGAATCAAAAGTGGACATAAG 58.907 38.462 0.00 0.00 0.00 1.73
2696 3056 7.073342 ACTCGAGTAACAAAATCCATTTAGC 57.927 36.000 18.46 0.00 0.00 3.09
2699 3059 7.094506 GGGTAACTCGAGTAACAAAATCCATTT 60.095 37.037 20.39 0.00 0.00 2.32
2700 3060 6.373495 GGGTAACTCGAGTAACAAAATCCATT 59.627 38.462 20.39 0.17 0.00 3.16
2805 3165 1.667236 TCACTGTGCTTTGTGTGGAG 58.333 50.000 2.12 0.00 35.82 3.86
2884 3244 3.447742 CTTTTGAGCTTTGGTGTCCAAC 58.552 45.455 0.35 0.00 43.82 3.77
3009 3369 8.944138 TGATAAGACCCAAGTGATATAAATGGA 58.056 33.333 0.00 0.00 32.82 3.41
3253 3613 4.294416 AGATAAATCAGAGGACGTGTCG 57.706 45.455 0.00 0.00 0.00 4.35
3276 3636 7.719483 AGCATTTGACAACCTATTTCATATGG 58.281 34.615 2.13 0.00 32.47 2.74
3519 3879 6.524101 AAGTTGCAAAACTGAGTAAGGAAA 57.476 33.333 0.00 0.00 32.47 3.13
3686 4047 2.166829 TCTCCTCTGACTGCTTCTGTC 58.833 52.381 0.00 0.00 33.83 3.51
3829 4190 5.734720 TGATGTCCAAGAGAACATACTTCC 58.265 41.667 0.00 0.00 0.00 3.46
4240 4601 3.251484 TCCATCCTGGTCTTCTTTGTCT 58.749 45.455 0.00 0.00 39.03 3.41
4642 5005 3.358111 TTAATGAATCTTCACGCCCCA 57.642 42.857 0.00 0.00 40.49 4.96
4898 7329 2.971330 TGGCCATTCAAATCAAACCAGT 59.029 40.909 0.00 0.00 0.00 4.00
4920 7351 7.500992 TGATAACATCTACCTTGATGGAAGTC 58.499 38.462 8.96 3.29 45.78 3.01
4954 7438 5.480772 TGGTCAAAAAGTAACCAAAGGAACA 59.519 36.000 0.00 0.00 40.04 3.18
4983 7467 8.151141 TGATCTTCATATTTTCATCAGCAGAC 57.849 34.615 0.00 0.00 0.00 3.51
4998 7482 7.496920 CAGCCAGTATCAAGTTTGATCTTCATA 59.503 37.037 10.43 0.00 44.17 2.15
4999 7483 6.318144 CAGCCAGTATCAAGTTTGATCTTCAT 59.682 38.462 10.43 0.00 44.17 2.57
5001 7485 5.448360 GCAGCCAGTATCAAGTTTGATCTTC 60.448 44.000 10.43 4.23 44.17 2.87
5011 7513 7.154656 TGTACATATTAGCAGCCAGTATCAAG 58.845 38.462 0.00 0.00 0.00 3.02
5108 7612 9.770097 CTGTATGTAGTCCATGTTCAAATATCT 57.230 33.333 0.00 0.00 34.86 1.98
5109 7613 9.764363 TCTGTATGTAGTCCATGTTCAAATATC 57.236 33.333 0.00 0.00 34.86 1.63
5111 7615 9.546428 CATCTGTATGTAGTCCATGTTCAAATA 57.454 33.333 0.00 0.00 34.86 1.40
5112 7616 8.049117 ACATCTGTATGTAGTCCATGTTCAAAT 58.951 33.333 0.00 0.00 44.66 2.32
5113 7617 7.394016 ACATCTGTATGTAGTCCATGTTCAAA 58.606 34.615 0.00 0.00 44.66 2.69
5115 7619 6.544928 ACATCTGTATGTAGTCCATGTTCA 57.455 37.500 0.00 0.00 44.66 3.18
5218 7958 5.859205 TTATACTCCCTCCGTTCCTAAAC 57.141 43.478 0.00 0.00 0.00 2.01
5264 9343 7.442969 AGAGTGTACGATGTTTTGGATAAACAA 59.557 33.333 7.11 0.00 42.57 2.83
5321 9400 4.223700 TGTGCTCAGACTTCCAGTAATGAT 59.776 41.667 0.00 0.00 0.00 2.45
5322 9401 3.578282 TGTGCTCAGACTTCCAGTAATGA 59.422 43.478 0.00 0.00 0.00 2.57
5338 9417 4.213270 TGCTGTACAATAACTGTTGTGCTC 59.787 41.667 2.69 0.12 42.72 4.26
5339 9418 4.024048 GTGCTGTACAATAACTGTTGTGCT 60.024 41.667 2.69 0.00 42.72 4.40
5340 9419 4.219033 GTGCTGTACAATAACTGTTGTGC 58.781 43.478 2.69 1.91 42.02 4.57
5341 9420 5.416862 TGTGCTGTACAATAACTGTTGTG 57.583 39.130 2.69 4.05 42.02 3.33
5411 9491 7.849804 AGCTTAATGTACTAATGACCTGTTG 57.150 36.000 0.00 0.00 0.00 3.33
5424 9504 7.715249 TCCACCATGATCTTTAGCTTAATGTAC 59.285 37.037 0.00 0.00 0.00 2.90
5427 9507 7.446319 TCATCCACCATGATCTTTAGCTTAATG 59.554 37.037 0.00 0.00 36.51 1.90
5444 9527 2.684630 GCCATCAACTCATCATCCACCA 60.685 50.000 0.00 0.00 0.00 4.17
5466 9568 3.903090 TCTTCCTGGCATTCATGGTTTTT 59.097 39.130 0.00 0.00 0.00 1.94
5487 9589 3.557595 GCGAACAGCTATATGGCCATATC 59.442 47.826 36.10 24.51 44.04 1.63
5488 9590 3.535561 GCGAACAGCTATATGGCCATAT 58.464 45.455 34.76 34.76 44.04 1.78
5489 9591 2.972625 GCGAACAGCTATATGGCCATA 58.027 47.619 27.36 27.36 44.04 2.74
5490 9592 1.813513 GCGAACAGCTATATGGCCAT 58.186 50.000 24.45 24.45 44.04 4.40
5491 9593 2.923276 TGGCGAACAGCTATATGGCCA 61.923 52.381 8.56 8.56 45.96 5.36
5492 9594 1.611673 ATGGCGAACAGCTATATGGCC 60.612 52.381 7.54 10.45 45.65 5.36
5494 9596 4.836125 AAAATGGCGAACAGCTATATGG 57.164 40.909 0.00 0.00 46.85 2.74
5496 9598 4.037923 CCCAAAAATGGCGAACAGCTATAT 59.962 41.667 0.00 0.00 46.85 0.86
5497 9599 3.380004 CCCAAAAATGGCGAACAGCTATA 59.620 43.478 0.00 0.00 46.85 1.31
5525 9628 1.067582 CGATAACTGGGGGAGCGAC 59.932 63.158 0.00 0.00 0.00 5.19
5528 9631 0.321996 GGATCGATAACTGGGGGAGC 59.678 60.000 0.00 0.00 0.00 4.70
5531 9634 1.070758 CTGTGGATCGATAACTGGGGG 59.929 57.143 0.00 0.00 0.00 5.40
5542 9645 2.014335 TCATCAGCAACTGTGGATCG 57.986 50.000 0.00 0.00 32.61 3.69
5545 9648 2.038820 TGTCATCATCAGCAACTGTGGA 59.961 45.455 0.00 0.00 32.61 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.