Multiple sequence alignment - TraesCS6D01G083100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G083100 chr6D 100.000 3473 0 0 1 3473 48080825 48084297 0.000000e+00 6414.0
1 TraesCS6D01G083100 chr6D 86.282 1560 208 6 991 2547 48468842 48467286 0.000000e+00 1690.0
2 TraesCS6D01G083100 chr6B 86.870 2262 202 47 477 2699 123497516 123495311 0.000000e+00 2444.0
3 TraesCS6D01G083100 chr6B 85.585 1762 218 20 991 2725 123206276 123204524 0.000000e+00 1814.0
4 TraesCS6D01G083100 chr6B 86.074 1630 210 11 990 2608 123417475 123415852 0.000000e+00 1736.0
5 TraesCS6D01G083100 chr6B 82.155 2107 281 50 991 3038 123018792 123016722 0.000000e+00 1720.0
6 TraesCS6D01G083100 chr6B 87.616 323 35 4 1 321 123498392 123498073 1.520000e-98 370.0
7 TraesCS6D01G083100 chr6B 81.962 316 24 6 3190 3473 123494696 123494382 1.610000e-58 237.0
8 TraesCS6D01G083100 chr6B 92.105 152 12 0 329 480 123498034 123497883 7.550000e-52 215.0
9 TraesCS6D01G083100 chr6B 86.577 149 16 4 3056 3201 123494859 123494712 9.980000e-36 161.0
10 TraesCS6D01G083100 chr6A 87.525 2004 206 23 637 2608 67055862 67053871 0.000000e+00 2276.0
11 TraesCS6D01G083100 chr6A 86.609 1852 200 17 991 2805 66379371 66381211 0.000000e+00 2002.0
12 TraesCS6D01G083100 chr6A 87.252 1765 193 18 991 2734 66373437 66375190 0.000000e+00 1984.0
13 TraesCS6D01G083100 chr6A 85.492 1606 219 10 991 2587 66821486 66819886 0.000000e+00 1663.0
14 TraesCS6D01G083100 chr6A 80.870 690 81 24 1 656 67056547 67055875 2.410000e-136 496.0
15 TraesCS6D01G083100 chr6A 81.778 450 47 21 3056 3473 66375442 66375888 9.230000e-91 344.0
16 TraesCS6D01G083100 chr6A 86.154 260 28 5 2783 3038 66375199 66375454 1.230000e-69 274.0
17 TraesCS6D01G083100 chr6A 87.162 148 17 2 3056 3201 67002402 67002255 2.140000e-37 167.0
18 TraesCS6D01G083100 chr6A 93.617 94 6 0 3380 3473 67001853 67001760 1.300000e-29 141.0
19 TraesCS6D01G083100 chr6A 92.000 100 8 0 3230 3329 67002186 67002087 1.300000e-29 141.0
20 TraesCS6D01G083100 chr6A 76.506 332 15 22 3186 3473 66381824 66382136 4.710000e-24 122.0
21 TraesCS6D01G083100 chr6A 82.407 108 18 1 3073 3180 67053361 67053255 3.690000e-15 93.5
22 TraesCS6D01G083100 chr7D 86.118 1592 207 11 1025 2608 192447558 192449143 0.000000e+00 1703.0
23 TraesCS6D01G083100 chr7D 85.816 282 35 3 2761 3038 192512900 192513180 9.430000e-76 294.0
24 TraesCS6D01G083100 chr7D 88.276 145 12 4 3056 3198 192513168 192513309 5.960000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G083100 chr6D 48080825 48084297 3472 False 6414.000000 6414 100.000000 1 3473 1 chr6D.!!$F1 3472
1 TraesCS6D01G083100 chr6D 48467286 48468842 1556 True 1690.000000 1690 86.282000 991 2547 1 chr6D.!!$R1 1556
2 TraesCS6D01G083100 chr6B 123204524 123206276 1752 True 1814.000000 1814 85.585000 991 2725 1 chr6B.!!$R2 1734
3 TraesCS6D01G083100 chr6B 123415852 123417475 1623 True 1736.000000 1736 86.074000 990 2608 1 chr6B.!!$R3 1618
4 TraesCS6D01G083100 chr6B 123016722 123018792 2070 True 1720.000000 1720 82.155000 991 3038 1 chr6B.!!$R1 2047
5 TraesCS6D01G083100 chr6B 123494382 123498392 4010 True 685.400000 2444 87.026000 1 3473 5 chr6B.!!$R4 3472
6 TraesCS6D01G083100 chr6A 66819886 66821486 1600 True 1663.000000 1663 85.492000 991 2587 1 chr6A.!!$R1 1596
7 TraesCS6D01G083100 chr6A 67053255 67056547 3292 True 955.166667 2276 83.600667 1 3180 3 chr6A.!!$R3 3179
8 TraesCS6D01G083100 chr6A 66373437 66382136 8699 False 945.200000 2002 83.659800 991 3473 5 chr6A.!!$F1 2482
9 TraesCS6D01G083100 chr7D 192447558 192449143 1585 False 1703.000000 1703 86.118000 1025 2608 1 chr7D.!!$F1 1583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 255 0.253044 CCCGATTGTGGTGTGAGGAT 59.747 55.0 0.0 0.0 0.00 3.24 F
321 324 0.318784 GGCTCCCACTATAACGCTCG 60.319 60.0 0.0 0.0 0.00 5.03 F
1499 7943 0.324368 AGGATACCTGACGACCTGCA 60.324 55.0 0.0 0.0 29.57 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1455 7896 0.249238 GCAGTATGTCCTGAGCCTCG 60.249 60.0 0.00 0.0 39.31 4.63 R
1540 7984 0.813184 CGCTGGCTCAATCCATTGTT 59.187 50.0 0.00 0.0 38.84 2.83 R
3352 10275 0.110056 GGTGCACACATGAAAGCTCG 60.110 55.0 20.43 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.787473 TCCTGATGAGAAATGCGGTT 57.213 45.000 0.00 0.00 0.00 4.44
104 105 0.794229 GTTGCGCCATTCACATGACG 60.794 55.000 4.18 0.00 39.15 4.35
157 158 2.439960 ATCCGAATGGCCACCGCTA 61.440 57.895 20.40 12.56 34.14 4.26
162 163 1.680338 GAATGGCCACCGCTAGAATT 58.320 50.000 8.16 0.00 34.44 2.17
163 164 2.024414 GAATGGCCACCGCTAGAATTT 58.976 47.619 8.16 0.00 34.44 1.82
171 172 2.168521 CACCGCTAGAATTTGAGGGAGA 59.831 50.000 0.00 0.00 0.00 3.71
197 199 0.391597 GCCATTAATCCGAGGGACGA 59.608 55.000 0.00 0.00 45.77 4.20
211 213 4.082733 CGAGGGACGATTATTCTCTATGCA 60.083 45.833 0.00 0.00 45.77 3.96
220 222 3.895232 ATTCTCTATGCAGACAACCGT 57.105 42.857 0.00 0.00 0.00 4.83
229 231 3.403968 TGCAGACAACCGTGCTATTTTA 58.596 40.909 0.00 0.00 40.54 1.52
230 232 3.435327 TGCAGACAACCGTGCTATTTTAG 59.565 43.478 0.00 0.00 40.54 1.85
252 255 0.253044 CCCGATTGTGGTGTGAGGAT 59.747 55.000 0.00 0.00 0.00 3.24
261 264 3.244215 TGTGGTGTGAGGATGAAGAAGAC 60.244 47.826 0.00 0.00 0.00 3.01
282 285 3.181465 ACGAAACTTCACTCTCACACCAT 60.181 43.478 0.00 0.00 0.00 3.55
293 296 4.156190 ACTCTCACACCATAACAGACTACG 59.844 45.833 0.00 0.00 0.00 3.51
300 303 2.758979 CCATAACAGACTACGACCCACT 59.241 50.000 0.00 0.00 0.00 4.00
321 324 0.318784 GGCTCCCACTATAACGCTCG 60.319 60.000 0.00 0.00 0.00 5.03
322 325 0.666913 GCTCCCACTATAACGCTCGA 59.333 55.000 0.00 0.00 0.00 4.04
323 326 1.599916 GCTCCCACTATAACGCTCGAC 60.600 57.143 0.00 0.00 0.00 4.20
324 327 1.674441 CTCCCACTATAACGCTCGACA 59.326 52.381 0.00 0.00 0.00 4.35
326 329 2.691526 TCCCACTATAACGCTCGACAAT 59.308 45.455 0.00 0.00 0.00 2.71
342 378 0.729116 CAATCGACATCACTGGCACC 59.271 55.000 0.00 0.00 0.00 5.01
353 389 0.326048 ACTGGCACCAGATCTAGGCT 60.326 55.000 23.30 0.00 46.30 4.58
433 473 3.349006 CGCAGACGCAAAGCCACT 61.349 61.111 0.00 0.00 38.40 4.00
715 1174 1.272092 TGGGCTATGCTCAGTTTTGCT 60.272 47.619 0.00 0.00 32.27 3.91
944 1444 2.654079 CCGCTGCAGGGAGTTCTCT 61.654 63.158 30.57 0.00 0.00 3.10
1449 7887 1.364626 GCCTCTGTGACATGAAGCGG 61.365 60.000 0.00 0.00 0.00 5.52
1450 7888 0.742281 CCTCTGTGACATGAAGCGGG 60.742 60.000 0.00 0.00 0.00 6.13
1455 7896 1.375908 TGACATGAAGCGGGCAGAC 60.376 57.895 0.00 0.00 0.00 3.51
1456 7897 2.434884 ACATGAAGCGGGCAGACG 60.435 61.111 0.00 0.00 0.00 4.18
1457 7898 2.125552 CATGAAGCGGGCAGACGA 60.126 61.111 0.00 0.00 35.47 4.20
1499 7943 0.324368 AGGATACCTGACGACCTGCA 60.324 55.000 0.00 0.00 29.57 4.41
1540 7984 4.934001 CAGTAATTCTCAAGAGCTTCTGCA 59.066 41.667 0.00 0.00 42.74 4.41
1548 7992 2.555325 CAAGAGCTTCTGCAACAATGGA 59.445 45.455 0.00 0.00 42.74 3.41
1549 7993 3.083122 AGAGCTTCTGCAACAATGGAT 57.917 42.857 0.00 0.00 42.74 3.41
1550 7994 3.428532 AGAGCTTCTGCAACAATGGATT 58.571 40.909 0.00 0.00 42.74 3.01
1559 8003 0.813184 AACAATGGATTGAGCCAGCG 59.187 50.000 6.37 0.00 42.15 5.18
1709 8153 2.733956 TGAAATGATACAACAGGGGCC 58.266 47.619 0.00 0.00 0.00 5.80
1731 8175 1.997606 GTGCCTAATGTGGTGACGTAC 59.002 52.381 0.00 0.00 0.00 3.67
1737 8181 3.746045 AATGTGGTGACGTACAACTCT 57.254 42.857 0.00 0.00 37.08 3.24
1738 8182 2.502213 TGTGGTGACGTACAACTCTG 57.498 50.000 0.00 0.00 37.08 3.35
1864 8308 5.826737 AGCTTGATCCAAGGATATTCAACTG 59.173 40.000 0.68 0.00 41.31 3.16
1955 8399 4.020573 TGTTACCTACAACTCACTCATGGG 60.021 45.833 0.00 0.00 32.64 4.00
2060 8504 6.751514 AGTCTCATACTCTATTATGCTCCG 57.248 41.667 0.00 0.00 30.33 4.63
2139 8583 4.563580 GCAAGAGATGGAGTTGTACCTGAA 60.564 45.833 0.00 0.00 0.00 3.02
2233 8677 0.610232 AGACATGTTGAAGCAGGGGC 60.610 55.000 0.00 0.00 41.61 5.80
2337 8782 5.509832 TCAATGAGATGATTGATAGGGGG 57.490 43.478 0.00 0.00 37.41 5.40
2390 8835 5.916883 GCATGATTGAGGGTTATTTGAATCG 59.083 40.000 0.00 0.00 0.00 3.34
2622 9113 5.885230 TCAGTTGGTTTTATGCTCTCATG 57.115 39.130 0.00 0.00 34.22 3.07
2635 9126 4.965814 TGCTCTCATGGTCTTGATATTCC 58.034 43.478 0.00 0.00 0.00 3.01
2670 9162 9.313118 GTTGTTATTCTGATTGTTCCAAACTTT 57.687 29.630 0.00 0.00 0.00 2.66
2686 9178 8.924511 TCCAAACTTTCACTAGAATTTGAGAT 57.075 30.769 0.00 0.00 36.51 2.75
2727 9228 7.582667 AAGGTTGTTAGTTGCTCTTTATTGT 57.417 32.000 0.00 0.00 0.00 2.71
2775 9388 4.252878 GCAATTTTTAGGGTGGATTGTGG 58.747 43.478 0.00 0.00 31.96 4.17
2793 9437 0.469917 GGCCTGGCTGATTAGTGCTA 59.530 55.000 19.68 0.00 0.00 3.49
2805 9609 6.909357 GCTGATTAGTGCTATTCAAACATCAC 59.091 38.462 5.63 0.00 0.00 3.06
2873 9681 2.678336 GTTATTGCCGTCTTTCAGGGAG 59.322 50.000 0.00 0.00 30.71 4.30
2895 9704 7.013750 GGGAGAGAGAACAATTTCACTTTTCTT 59.986 37.037 0.00 0.00 33.28 2.52
2943 9752 4.616802 CGAAACACTACAATTGGTCATTGC 59.383 41.667 10.83 0.00 45.74 3.56
2952 9761 8.432013 ACTACAATTGGTCATTGCTCATATAGA 58.568 33.333 10.83 0.00 45.74 1.98
2959 9768 9.851686 TTGGTCATTGCTCATATAGATTTAGTT 57.148 29.630 0.00 0.00 0.00 2.24
3020 9830 2.027192 TGATTCCTGGTAGCACCTTCAC 60.027 50.000 6.83 0.00 39.58 3.18
3033 9843 3.562973 GCACCTTCACCATGATGATACTG 59.437 47.826 0.00 0.00 0.00 2.74
3038 9848 7.500227 CACCTTCACCATGATGATACTGTATTT 59.500 37.037 1.22 0.00 0.00 1.40
3039 9849 8.055181 ACCTTCACCATGATGATACTGTATTTT 58.945 33.333 1.22 0.00 0.00 1.82
3040 9850 9.559732 CCTTCACCATGATGATACTGTATTTTA 57.440 33.333 1.22 0.00 0.00 1.52
3099 9962 7.736447 AGGCTTATGCTTGTAGTTATCATTC 57.264 36.000 0.13 0.00 39.59 2.67
3120 9983 4.980590 TCTGGTTTAAGTTGCGCATATTG 58.019 39.130 12.75 0.00 0.00 1.90
3156 10019 6.867519 TTACTCTTGATGTGAGATACCCAA 57.132 37.500 0.00 0.00 35.66 4.12
3175 10038 2.549754 CAAACCTGGTTGTGAGCACTAG 59.450 50.000 13.79 0.00 0.00 2.57
3248 10153 4.970611 GCGTCTTTGTTCTTCTTTTCTTCC 59.029 41.667 0.00 0.00 0.00 3.46
3255 10160 5.377478 TGTTCTTCTTTTCTTCCTCCTTCC 58.623 41.667 0.00 0.00 0.00 3.46
3256 10161 5.104109 TGTTCTTCTTTTCTTCCTCCTTCCA 60.104 40.000 0.00 0.00 0.00 3.53
3294 10199 8.988064 TCCGAGATAAATATATTGCTCAGAAC 57.012 34.615 16.83 5.10 0.00 3.01
3305 10210 7.792374 ATATTGCTCAGAACGAATTACATGT 57.208 32.000 2.69 2.69 0.00 3.21
3307 10212 5.281693 TGCTCAGAACGAATTACATGTTG 57.718 39.130 2.30 0.00 0.00 3.33
3352 10275 6.683974 TCACATTGCCTAAATAGCTTTCTC 57.316 37.500 0.00 0.00 0.00 2.87
3369 10312 1.150827 CTCGAGCTTTCATGTGTGCA 58.849 50.000 0.00 0.00 0.00 4.57
3454 10408 2.677836 CCCCACATGTTACGACTGATTG 59.322 50.000 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.684623 CCCCCTTAATGGTGCCTG 57.315 61.111 0.00 0.00 0.00 4.85
50 51 2.774687 GGAAACGCTTCCCTTAACAGA 58.225 47.619 6.30 0.00 44.91 3.41
83 84 1.514657 CATGTGAATGGCGCAACCG 60.515 57.895 10.83 0.00 43.94 4.44
87 88 3.176661 CGTCATGTGAATGGCGCA 58.823 55.556 10.83 0.00 42.82 6.09
104 105 3.308323 GCATCATCTCCTCACTTTTCGAC 59.692 47.826 0.00 0.00 0.00 4.20
157 158 0.543749 CGCCCTCTCCCTCAAATTCT 59.456 55.000 0.00 0.00 0.00 2.40
162 163 3.706373 GCACGCCCTCTCCCTCAA 61.706 66.667 0.00 0.00 0.00 3.02
171 172 1.525995 CGGATTAATGGCACGCCCT 60.526 57.895 5.42 0.00 34.56 5.19
197 199 5.755375 CACGGTTGTCTGCATAGAGAATAAT 59.245 40.000 0.00 0.00 38.32 1.28
211 213 5.116882 GGATCTAAAATAGCACGGTTGTCT 58.883 41.667 0.00 0.00 0.00 3.41
220 222 5.063204 CCACAATCGGGATCTAAAATAGCA 58.937 41.667 0.00 0.00 0.00 3.49
229 231 1.208052 CTCACACCACAATCGGGATCT 59.792 52.381 0.00 0.00 0.00 2.75
230 232 1.656652 CTCACACCACAATCGGGATC 58.343 55.000 0.00 0.00 0.00 3.36
252 255 5.163550 TGAGAGTGAAGTTTCGTCTTCTTCA 60.164 40.000 14.60 12.13 43.09 3.02
261 264 2.821546 TGGTGTGAGAGTGAAGTTTCG 58.178 47.619 0.00 0.00 0.00 3.46
282 285 3.614092 CCTAGTGGGTCGTAGTCTGTTA 58.386 50.000 0.00 0.00 0.00 2.41
300 303 2.236766 GAGCGTTATAGTGGGAGCCTA 58.763 52.381 0.00 0.00 0.00 3.93
321 324 1.394917 GTGCCAGTGATGTCGATTGTC 59.605 52.381 0.00 0.00 0.00 3.18
322 325 1.442769 GTGCCAGTGATGTCGATTGT 58.557 50.000 0.00 0.00 0.00 2.71
323 326 0.729116 GGTGCCAGTGATGTCGATTG 59.271 55.000 0.00 0.00 0.00 2.67
324 327 0.324614 TGGTGCCAGTGATGTCGATT 59.675 50.000 0.00 0.00 0.00 3.34
326 329 1.184970 TCTGGTGCCAGTGATGTCGA 61.185 55.000 16.85 0.00 43.96 4.20
353 389 2.642254 CGTGGCGGGTCTAGGTGAA 61.642 63.158 0.00 0.00 0.00 3.18
417 457 2.253452 CAGTGGCTTTGCGTCTGC 59.747 61.111 0.00 0.00 43.20 4.26
552 963 4.758251 TCGGCGGTGGATGTGCTG 62.758 66.667 7.21 0.00 36.33 4.41
553 964 4.457496 CTCGGCGGTGGATGTGCT 62.457 66.667 7.21 0.00 0.00 4.40
715 1174 0.735978 CACGCGTTGACATAGCAGGA 60.736 55.000 10.22 0.00 0.00 3.86
944 1444 3.353557 ACGAGACTGGACAGTGCTAATA 58.646 45.455 10.08 0.00 42.66 0.98
1203 1703 3.570212 GTGCAGGTGGTGGAGGGT 61.570 66.667 0.00 0.00 0.00 4.34
1449 7887 3.071206 TCCTGAGCCTCGTCTGCC 61.071 66.667 0.00 0.00 0.00 4.85
1450 7888 1.954362 ATGTCCTGAGCCTCGTCTGC 61.954 60.000 0.00 0.00 0.00 4.26
1455 7896 0.249238 GCAGTATGTCCTGAGCCTCG 60.249 60.000 0.00 0.00 39.31 4.63
1456 7897 1.068434 GAGCAGTATGTCCTGAGCCTC 59.932 57.143 0.00 0.00 39.31 4.70
1457 7898 1.118838 GAGCAGTATGTCCTGAGCCT 58.881 55.000 0.00 0.00 39.31 4.58
1463 7907 3.619900 TCCTATGGAGCAGTATGTCCT 57.380 47.619 0.00 0.00 39.31 3.85
1499 7943 3.585360 ACTGAGTAGGAGATGGCATCAT 58.415 45.455 27.93 15.97 36.09 2.45
1540 7984 0.813184 CGCTGGCTCAATCCATTGTT 59.187 50.000 0.00 0.00 38.84 2.83
1559 8003 3.426568 GGAGCAGGTCAAGCGCAC 61.427 66.667 11.47 0.00 37.01 5.34
1639 8083 4.335416 TCACCCTCTTTAAAGAAGCCATG 58.665 43.478 18.25 12.07 34.03 3.66
1708 8152 1.453155 GTCACCACATTAGGCACAGG 58.547 55.000 0.00 0.00 0.00 4.00
1709 8153 1.078709 CGTCACCACATTAGGCACAG 58.921 55.000 0.00 0.00 0.00 3.66
1731 8175 2.196749 AGCGCATCGATAACAGAGTTG 58.803 47.619 11.47 0.00 0.00 3.16
1864 8308 2.544267 CGACTTCTTTCAACTGTCCCAC 59.456 50.000 0.00 0.00 0.00 4.61
1955 8399 1.176527 TCCATGCTTGCAAAGGTAGC 58.823 50.000 0.00 0.00 46.35 3.58
2003 8447 1.619432 GGCCATTCAGGGTCATGGAAA 60.619 52.381 0.00 0.00 42.49 3.13
2011 8455 0.898326 GGTTTTCGGCCATTCAGGGT 60.898 55.000 2.24 0.00 38.09 4.34
2014 8458 1.533625 TCTGGTTTTCGGCCATTCAG 58.466 50.000 2.24 1.31 35.19 3.02
2060 8504 3.193056 GGATCCTTCTATAGCGTACCCAC 59.807 52.174 3.84 0.00 0.00 4.61
2139 8583 7.765695 AATCAGTATGTTGAAACAATGGAGT 57.234 32.000 0.00 0.00 43.03 3.85
2233 8677 6.780457 ATAAATGAAATCACCAGGGTTCAG 57.220 37.500 0.00 0.00 33.74 3.02
2280 8725 2.705148 TCATCCATCCTGCCCATCTTA 58.295 47.619 0.00 0.00 0.00 2.10
2337 8782 7.259161 TGTAAATTTTTGTGTCAAGTGGTACC 58.741 34.615 4.43 4.43 0.00 3.34
2390 8835 1.197721 CGGCTTTCACAGAATCACCAC 59.802 52.381 0.00 0.00 0.00 4.16
2436 8881 3.021695 CGGCCTATGACGAATATCCCTA 58.978 50.000 0.00 0.00 0.00 3.53
2595 9045 6.479990 TGAGAGCATAAAACCAACTGATATCG 59.520 38.462 0.00 0.00 0.00 2.92
2609 9100 7.663081 GGAATATCAAGACCATGAGAGCATAAA 59.337 37.037 0.00 0.00 32.27 1.40
2622 9113 7.339466 ACAACACATTTAGGGAATATCAAGACC 59.661 37.037 0.00 0.00 0.00 3.85
2635 9126 9.912634 AACAATCAGAATAACAACACATTTAGG 57.087 29.630 0.00 0.00 0.00 2.69
2686 9178 8.644374 AACAACCTTAAGGCTTAATTCACATA 57.356 30.769 21.92 0.00 39.32 2.29
2687 9179 7.539034 AACAACCTTAAGGCTTAATTCACAT 57.461 32.000 21.92 3.87 39.32 3.21
2727 9228 7.706179 CAGTGCCTCAAGAAAATTCAAACTAAA 59.294 33.333 0.00 0.00 0.00 1.85
2744 9262 2.562298 CCCTAAAAATTGCAGTGCCTCA 59.438 45.455 13.72 0.00 0.00 3.86
2775 9388 2.557920 ATAGCACTAATCAGCCAGGC 57.442 50.000 1.84 1.84 0.00 4.85
2793 9437 7.926674 TGTCTATCATGTGTGATGTTTGAAT 57.073 32.000 1.37 0.00 44.62 2.57
2860 9666 2.558795 TGTTCTCTCTCCCTGAAAGACG 59.441 50.000 0.00 0.00 34.07 4.18
2873 9681 7.707104 TGGAAGAAAAGTGAAATTGTTCTCTC 58.293 34.615 0.00 0.00 36.75 3.20
2895 9704 6.237901 ACTTCAGCACACAGTTATTTATGGA 58.762 36.000 0.00 0.00 0.00 3.41
2959 9768 8.408043 TCTTCATAGAAATTTCTTTGCTCCAA 57.592 30.769 25.02 15.26 38.70 3.53
2990 9800 3.243704 GCTACCAGGAATCACTCAGCTAG 60.244 52.174 0.00 0.00 0.00 3.42
2997 9807 1.958288 AGGTGCTACCAGGAATCACT 58.042 50.000 0.00 0.00 41.95 3.41
3001 9811 1.282157 GGTGAAGGTGCTACCAGGAAT 59.718 52.381 0.00 0.00 41.95 3.01
3045 9855 9.098355 GACTAATACAGTATCATTGCTGTCAAA 57.902 33.333 0.00 0.00 44.34 2.69
3046 9856 8.257306 TGACTAATACAGTATCATTGCTGTCAA 58.743 33.333 0.00 0.00 44.34 3.18
3047 9857 7.781056 TGACTAATACAGTATCATTGCTGTCA 58.219 34.615 0.00 0.00 44.34 3.58
3048 9858 8.824159 ATGACTAATACAGTATCATTGCTGTC 57.176 34.615 0.00 0.00 44.34 3.51
3051 9861 9.935241 CCTAATGACTAATACAGTATCATTGCT 57.065 33.333 13.90 0.00 37.72 3.91
3053 9863 9.935241 AGCCTAATGACTAATACAGTATCATTG 57.065 33.333 13.90 7.00 37.72 2.82
3058 9868 9.877178 GCATAAGCCTAATGACTAATACAGTAT 57.123 33.333 0.00 0.00 33.83 2.12
3099 9962 3.547468 GCAATATGCGCAACTTAAACCAG 59.453 43.478 17.11 0.00 31.71 4.00
3120 9983 4.072131 TCAAGAGTAAAACACATGAGGGC 58.928 43.478 0.00 0.00 0.00 5.19
3156 10019 1.072331 CCTAGTGCTCACAACCAGGTT 59.928 52.381 0.00 0.00 0.00 3.50
3196 10088 7.395772 TGGTCAAATGACATATTTTTCCTGCTA 59.604 33.333 14.93 0.00 46.47 3.49
3248 10153 5.066593 GGATTTTATAGCTGGTGGAAGGAG 58.933 45.833 0.00 0.00 0.00 3.69
3255 10160 7.962964 TTTATCTCGGATTTTATAGCTGGTG 57.037 36.000 0.00 0.00 0.00 4.17
3286 10191 5.107104 TGACAACATGTAATTCGTTCTGAGC 60.107 40.000 0.00 0.00 0.00 4.26
3289 10194 7.077605 ACATTGACAACATGTAATTCGTTCTG 58.922 34.615 0.00 0.00 0.00 3.02
3291 10196 6.523201 GGACATTGACAACATGTAATTCGTTC 59.477 38.462 0.00 0.00 0.00 3.95
3294 10199 5.937187 TGGACATTGACAACATGTAATTCG 58.063 37.500 0.00 0.00 0.00 3.34
3304 10209 5.115480 ACAAAATGGTTGGACATTGACAAC 58.885 37.500 15.60 15.60 44.62 3.32
3305 10210 5.350504 ACAAAATGGTTGGACATTGACAA 57.649 34.783 0.00 0.00 40.71 3.18
3307 10212 5.814705 TGAAACAAAATGGTTGGACATTGAC 59.185 36.000 0.00 0.00 40.71 3.18
3352 10275 0.110056 GGTGCACACATGAAAGCTCG 60.110 55.000 20.43 0.00 0.00 5.03
3393 10336 3.484557 GCAAAACAGAACAGAACGAACGA 60.485 43.478 0.14 0.00 0.00 3.85
3394 10340 2.776225 GCAAAACAGAACAGAACGAACG 59.224 45.455 0.00 0.00 0.00 3.95
3399 10345 3.068024 TCCCATGCAAAACAGAACAGAAC 59.932 43.478 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.