Multiple sequence alignment - TraesCS6D01G083000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G083000 chr6D 100.000 2950 0 0 1 2950 47996906 47999855 0.000000e+00 5448.0
1 TraesCS6D01G083000 chr6D 100.000 2485 0 0 3195 5679 48000100 48002584 0.000000e+00 4590.0
2 TraesCS6D01G083000 chr6D 94.770 478 24 1 5202 5679 48012144 48012620 0.000000e+00 743.0
3 TraesCS6D01G083000 chr6D 91.459 281 22 2 4929 5208 84336682 84336403 8.930000e-103 385.0
4 TraesCS6D01G083000 chr6A 94.405 2949 111 23 4 2937 67062410 67059501 0.000000e+00 4482.0
5 TraesCS6D01G083000 chr6A 96.399 1444 42 4 3229 4663 67059329 67057887 0.000000e+00 2370.0
6 TraesCS6D01G083000 chr6A 79.442 681 84 27 3735 4379 66991195 66990535 1.130000e-116 431.0
7 TraesCS6D01G083000 chr6A 94.273 227 11 2 4704 4929 67057738 67057513 4.210000e-91 346.0
8 TraesCS6D01G083000 chr6A 80.451 399 40 18 3980 4365 66816730 66816357 2.610000e-68 270.0
9 TraesCS6D01G083000 chr6A 81.166 223 21 3 4397 4619 66816273 66816072 5.890000e-35 159.0
10 TraesCS6D01G083000 chr6A 81.166 223 21 15 4397 4619 66990401 66990200 5.890000e-35 159.0
11 TraesCS6D01G083000 chr6A 84.667 150 22 1 4270 4419 66382182 66382330 1.270000e-31 148.0
12 TraesCS6D01G083000 chr6A 100.000 28 0 0 251 278 401901356 401901383 1.000000e-02 52.8
13 TraesCS6D01G083000 chr6B 90.373 2576 163 37 1 2538 123504889 123502361 0.000000e+00 3304.0
14 TraesCS6D01G083000 chr6B 96.216 872 32 1 3225 4095 123501468 123500597 0.000000e+00 1426.0
15 TraesCS6D01G083000 chr6B 94.435 575 27 3 4094 4663 123500515 123499941 0.000000e+00 880.0
16 TraesCS6D01G083000 chr6B 93.473 429 17 3 2533 2950 123502283 123501855 1.340000e-175 627.0
17 TraesCS6D01G083000 chr6B 95.023 221 10 1 4708 4927 123499784 123499564 4.210000e-91 346.0
18 TraesCS6D01G083000 chr7D 95.957 470 19 0 5201 5670 84389065 84389534 0.000000e+00 763.0
19 TraesCS6D01G083000 chr7D 90.638 470 42 2 5201 5670 189093622 189094089 1.740000e-174 623.0
20 TraesCS6D01G083000 chr7D 91.111 270 24 0 4930 5199 84378789 84379058 3.230000e-97 366.0
21 TraesCS6D01G083000 chr7D 100.000 29 0 0 250 278 196908325 196908297 3.000000e-03 54.7
22 TraesCS6D01G083000 chr1D 93.319 479 32 0 5201 5679 277287040 277287518 0.000000e+00 708.0
23 TraesCS6D01G083000 chr1D 92.034 477 38 0 5201 5677 408802401 408802877 0.000000e+00 671.0
24 TraesCS6D01G083000 chr1D 90.385 468 45 0 5203 5670 340245000 340245467 2.910000e-172 616.0
25 TraesCS6D01G083000 chr1D 89.362 282 27 3 4930 5209 408787492 408787772 9.050000e-93 351.0
26 TraesCS6D01G083000 chr1D 89.668 271 27 1 4930 5199 47336321 47336591 1.510000e-90 344.0
27 TraesCS6D01G083000 chr3D 92.693 479 35 0 5201 5679 507453475 507452997 0.000000e+00 691.0
28 TraesCS6D01G083000 chr3D 90.147 477 47 0 5203 5679 117592454 117591978 6.250000e-174 621.0
29 TraesCS6D01G083000 chr3D 89.562 479 50 0 5201 5679 143497679 143497201 4.870000e-170 608.0
30 TraesCS6D01G083000 chr3D 90.074 272 25 2 4929 5199 440530348 440530618 9.050000e-93 351.0
31 TraesCS6D01G083000 chr2D 90.476 273 22 4 4929 5199 168479865 168479595 1.950000e-94 357.0
32 TraesCS6D01G083000 chr2D 89.007 282 28 3 4929 5208 372430533 372430253 4.210000e-91 346.0
33 TraesCS6D01G083000 chr2D 89.493 276 24 5 4936 5209 372458608 372458336 1.510000e-90 344.0
34 TraesCS6D01G083000 chr4A 90.076 262 24 2 4929 5190 708225696 708225955 7.050000e-89 339.0
35 TraesCS6D01G083000 chr4A 97.368 38 0 1 252 288 539153814 539153777 4.750000e-06 63.9
36 TraesCS6D01G083000 chr5A 100.000 31 0 0 252 282 280789607 280789577 2.210000e-04 58.4
37 TraesCS6D01G083000 chr1B 96.970 33 1 0 248 280 591120204 591120172 7.950000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G083000 chr6D 47996906 48002584 5678 False 5019.000000 5448 100.000000 1 5679 2 chr6D.!!$F2 5678
1 TraesCS6D01G083000 chr6A 67057513 67062410 4897 True 2399.333333 4482 95.025667 4 4929 3 chr6A.!!$R3 4925
2 TraesCS6D01G083000 chr6A 66990200 66991195 995 True 295.000000 431 80.304000 3735 4619 2 chr6A.!!$R2 884
3 TraesCS6D01G083000 chr6A 66816072 66816730 658 True 214.500000 270 80.808500 3980 4619 2 chr6A.!!$R1 639
4 TraesCS6D01G083000 chr6B 123499564 123504889 5325 True 1316.600000 3304 93.904000 1 4927 5 chr6B.!!$R1 4926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 525 0.098728 CACGATTTTGTCATCCCGCC 59.901 55.000 0.00 0.0 0.00 6.13 F
1912 1960 0.166814 CCAGTTCTTTGCACTAGCGC 59.833 55.000 0.00 0.0 46.23 5.92 F
3223 3366 1.978580 ACACTAGCAGCCTTAAGGTGT 59.021 47.619 22.55 13.7 46.08 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2037 2085 0.376152 GATCACATGACTTGCAGGCG 59.624 55.0 0.00 0.0 0.0 5.52 R
3756 4017 0.182537 CCACACAACCAGGTCAGGAA 59.817 55.0 0.00 0.0 0.0 3.36 R
5170 5809 0.107831 GTCATGGTAATGGGGCGCTA 59.892 55.0 7.64 0.0 34.3 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.871163 CGCCAACAGCAAGTGGTTTG 60.871 55.000 2.06 0.00 44.04 2.93
35 36 4.744631 CCAACAGCAAGTGGTTTGTAAATC 59.255 41.667 0.00 0.00 39.08 2.17
51 52 5.636837 TGTAAATCTCGCCAGTTTAAATGC 58.363 37.500 0.00 0.00 0.00 3.56
82 83 5.881637 TGCAACTTCTTAAAAACGAATGC 57.118 34.783 0.00 0.00 0.00 3.56
83 84 5.344066 TGCAACTTCTTAAAAACGAATGCA 58.656 33.333 0.00 0.00 34.57 3.96
84 85 5.982516 TGCAACTTCTTAAAAACGAATGCAT 59.017 32.000 0.00 0.00 33.01 3.96
89 96 7.850501 ACTTCTTAAAAACGAATGCATTTTGG 58.149 30.769 14.33 8.79 0.00 3.28
98 105 5.401550 ACGAATGCATTTTGGTTGATGTAG 58.598 37.500 14.33 0.00 0.00 2.74
99 106 5.182950 ACGAATGCATTTTGGTTGATGTAGA 59.817 36.000 14.33 0.00 0.00 2.59
124 131 9.541143 GAAAACATTTAAATTTGGAGAGAACCA 57.459 29.630 0.00 0.00 38.24 3.67
137 144 5.656416 TGGAGAGAACCAAAGTGTTTGAATT 59.344 36.000 0.87 0.00 43.26 2.17
139 146 7.139392 GGAGAGAACCAAAGTGTTTGAATTAC 58.861 38.462 0.87 0.00 43.26 1.89
148 155 5.978934 AGTGTTTGAATTACGAAACGAGT 57.021 34.783 0.00 0.00 35.25 4.18
245 252 1.949525 GCTCCAATGCATTACGGTGAT 59.050 47.619 12.53 0.00 0.00 3.06
285 292 8.160521 CTCTGCTAGAGTTGCTCTTAGTATTA 57.839 38.462 3.87 0.00 41.50 0.98
317 324 5.121380 TGGTCCTAGTTATACCGAACTCT 57.879 43.478 0.00 0.00 40.22 3.24
366 373 1.656818 CGGGCATGACCATTCACACC 61.657 60.000 20.22 0.00 42.05 4.16
376 383 1.152652 ATTCACACCGTTTGCCCCA 60.153 52.632 0.00 0.00 0.00 4.96
391 398 0.391793 CCCCAAGAGCGAACCTTCTC 60.392 60.000 0.00 0.00 0.00 2.87
463 487 1.151668 CGCATCATCCCGAAATCTCC 58.848 55.000 0.00 0.00 0.00 3.71
477 501 1.742761 ATCTCCAAGCCGTGAATGTG 58.257 50.000 0.00 0.00 0.00 3.21
501 525 0.098728 CACGATTTTGTCATCCCGCC 59.901 55.000 0.00 0.00 0.00 6.13
522 546 1.308998 CACCACAAGTCCGCTTCTTT 58.691 50.000 0.00 0.00 31.49 2.52
602 636 4.903049 TCTCACACTACCAACCCTCTAAAA 59.097 41.667 0.00 0.00 0.00 1.52
605 639 4.941873 CACACTACCAACCCTCTAAAATCC 59.058 45.833 0.00 0.00 0.00 3.01
682 716 3.662642 TCCTTTTTCATCCCCTTCTTCCT 59.337 43.478 0.00 0.00 0.00 3.36
685 719 1.204146 TTCATCCCCTTCTTCCTCCG 58.796 55.000 0.00 0.00 0.00 4.63
726 760 3.136123 GCTGCATCACACCGGCAT 61.136 61.111 0.00 0.00 36.87 4.40
771 806 1.933500 GCTGTTCGCTCGTTAGACCAA 60.934 52.381 0.00 0.00 35.14 3.67
786 821 1.219522 ACCAAAGCGAACGTTCCGAG 61.220 55.000 22.07 9.80 0.00 4.63
792 827 0.433871 GCGAACGTTCCGAGAAGAAC 59.566 55.000 22.07 0.00 42.25 3.01
793 828 1.058404 CGAACGTTCCGAGAAGAACC 58.942 55.000 22.07 0.00 42.63 3.62
794 829 1.601162 CGAACGTTCCGAGAAGAACCA 60.601 52.381 22.07 0.00 42.63 3.67
966 1008 2.034221 GCTTTTCCCCGAGCACCT 59.966 61.111 0.00 0.00 38.73 4.00
967 1009 1.198759 AGCTTTTCCCCGAGCACCTA 61.199 55.000 0.00 0.00 41.31 3.08
985 1029 2.000447 CTACCACTACGAAGCAAAGCC 59.000 52.381 0.00 0.00 0.00 4.35
1277 1322 4.547905 AGTACATCCCGCGCGTCG 62.548 66.667 29.95 18.37 38.08 5.12
1408 1453 4.136511 TCGCAGCCGTATCCGCAA 62.137 61.111 0.00 0.00 35.54 4.85
1746 1794 6.072342 ACCCAGTTACGGTAAGCAAATAAAAG 60.072 38.462 0.00 0.00 0.00 2.27
1747 1795 6.149807 CCCAGTTACGGTAAGCAAATAAAAGA 59.850 38.462 0.00 0.00 0.00 2.52
1748 1796 7.148137 CCCAGTTACGGTAAGCAAATAAAAGAT 60.148 37.037 0.00 0.00 0.00 2.40
1750 1798 9.620660 CAGTTACGGTAAGCAAATAAAAGATTT 57.379 29.630 0.00 0.00 0.00 2.17
1820 1868 5.473039 GTTCTTCAATTGGTGATTTCCCTG 58.527 41.667 5.42 0.00 35.70 4.45
1861 1909 2.496817 GCAGGTACTCGGAGGCTG 59.503 66.667 10.23 4.14 34.60 4.85
1866 1914 0.824759 GGTACTCGGAGGCTGTCAAT 59.175 55.000 10.23 0.00 0.00 2.57
1912 1960 0.166814 CCAGTTCTTTGCACTAGCGC 59.833 55.000 0.00 0.00 46.23 5.92
2037 2085 9.555727 TTTCATAGGTATCTTTAGTATTGTGCC 57.444 33.333 0.00 0.00 0.00 5.01
2038 2086 7.375834 TCATAGGTATCTTTAGTATTGTGCCG 58.624 38.462 0.00 0.00 0.00 5.69
2074 2122 5.163195 TGTGATCTTAGAAGGGAATAAGGGC 60.163 44.000 0.00 0.00 31.28 5.19
2207 2255 3.441222 CAGCTTGATTGTGCTTCATGGTA 59.559 43.478 0.00 0.00 37.44 3.25
2272 2320 9.766277 CTTGCATTAGAATTCTAGAAACTGAAC 57.234 33.333 14.63 6.73 0.00 3.18
2452 2500 9.830186 ATTACCTTGTGTCCTATAGTGATATCT 57.170 33.333 3.98 0.00 0.00 1.98
2453 2501 7.531857 ACCTTGTGTCCTATAGTGATATCTG 57.468 40.000 3.98 0.00 0.00 2.90
2454 2502 7.298374 ACCTTGTGTCCTATAGTGATATCTGA 58.702 38.462 3.98 0.00 0.00 3.27
2455 2503 7.952930 ACCTTGTGTCCTATAGTGATATCTGAT 59.047 37.037 3.98 0.00 0.00 2.90
2456 2504 9.467796 CCTTGTGTCCTATAGTGATATCTGATA 57.532 37.037 3.98 0.00 0.00 2.15
2694 2835 6.714810 TGCACTAATCCTTACTTTCACATTGT 59.285 34.615 0.00 0.00 0.00 2.71
2875 3018 6.967199 GTGATACTATTTACAGCCTGTTTTGC 59.033 38.462 1.02 0.00 0.00 3.68
3221 3364 4.717280 AGAATACACTAGCAGCCTTAAGGT 59.283 41.667 22.55 7.05 37.57 3.50
3223 3366 1.978580 ACACTAGCAGCCTTAAGGTGT 59.021 47.619 22.55 13.70 46.08 4.16
3228 3483 4.645588 ACTAGCAGCCTTAAGGTGTACTAG 59.354 45.833 25.38 25.38 46.08 2.57
3279 3534 5.907197 AAGTTGTGTCAAATACGTCTGAG 57.093 39.130 0.00 0.00 0.00 3.35
3281 3536 5.357257 AGTTGTGTCAAATACGTCTGAGTT 58.643 37.500 0.00 0.00 0.00 3.01
3331 3586 6.393990 TGTACTATGCCGCAAAATTTCATTT 58.606 32.000 0.00 0.00 0.00 2.32
3462 3723 8.768397 ACTATTCACTGATGGTTTTGTCCTATA 58.232 33.333 0.00 0.00 0.00 1.31
3486 3747 6.888430 ACATTTCTTCAGTTGTATGTCGAAC 58.112 36.000 0.00 0.00 0.00 3.95
3535 3796 7.041440 TGGTATATACATGCATGTGCTGTTAAC 60.041 37.037 36.72 23.32 41.89 2.01
3616 3877 7.820648 CCAGGAAATGGTTGCTATGAATATAC 58.179 38.462 0.00 0.00 44.91 1.47
3756 4017 8.663167 TCCCATATATTTCTCTCATGTGTGATT 58.337 33.333 0.81 0.00 32.98 2.57
3781 4042 1.904865 CCTGGTTGTGTGGCAGCAT 60.905 57.895 0.00 0.00 0.00 3.79
3811 4072 0.886043 TGTCCAGTGCATGTGTCAGC 60.886 55.000 0.00 0.00 0.00 4.26
3857 4126 4.693283 ACAAAGTAAAGAGGGCAAAAAGC 58.307 39.130 0.00 0.00 44.65 3.51
3880 4151 5.591877 GCAGGAGGAATATGTCATTTGAACT 59.408 40.000 0.00 0.00 0.00 3.01
4004 4280 3.081804 ACAGCTAAACCATTTTCTCGGG 58.918 45.455 0.00 0.00 0.00 5.14
4187 4559 3.439476 CAGTTCTTCAATCTCTGCAAGGG 59.561 47.826 0.00 0.00 33.69 3.95
4388 4769 1.202746 GCCATCAACTCCCTCATCTCC 60.203 57.143 0.00 0.00 0.00 3.71
4391 4772 0.614697 TCAACTCCCTCATCTCCGCA 60.615 55.000 0.00 0.00 0.00 5.69
4430 4811 5.284864 CGAGATCTTTAGCTGCATCTAACA 58.715 41.667 9.48 0.67 0.00 2.41
4599 5123 4.974275 GCTGCTGCATGTTTATGTAATCAG 59.026 41.667 11.11 0.00 39.41 2.90
4634 5158 8.465999 TGAAAATTACAATATTGTAGCACCTGG 58.534 33.333 23.65 0.00 43.77 4.45
4639 5164 6.699575 ACAATATTGTAGCACCTGGATTTC 57.300 37.500 19.51 0.00 40.16 2.17
4663 5188 8.408043 TCTTCAAGATATGTTGTTTTGGACAT 57.592 30.769 11.96 0.00 38.26 3.06
4664 5189 9.513906 TCTTCAAGATATGTTGTTTTGGACATA 57.486 29.630 11.96 0.00 41.46 2.29
4692 5253 0.550432 GACCCGTAGTACTCCCTCCT 59.450 60.000 0.00 0.00 0.00 3.69
4693 5254 1.771255 GACCCGTAGTACTCCCTCCTA 59.229 57.143 0.00 0.00 0.00 2.94
4694 5255 2.374839 GACCCGTAGTACTCCCTCCTAT 59.625 54.545 0.00 0.00 0.00 2.57
4696 5257 2.643801 CCCGTAGTACTCCCTCCTATCT 59.356 54.545 0.00 0.00 0.00 1.98
4697 5258 3.074242 CCCGTAGTACTCCCTCCTATCTT 59.926 52.174 0.00 0.00 0.00 2.40
4698 5259 4.325972 CCGTAGTACTCCCTCCTATCTTC 58.674 52.174 0.00 0.00 0.00 2.87
4700 5261 5.374921 CGTAGTACTCCCTCCTATCTTCAA 58.625 45.833 0.00 0.00 0.00 2.69
4701 5262 5.470777 CGTAGTACTCCCTCCTATCTTCAAG 59.529 48.000 0.00 0.00 0.00 3.02
4703 5264 6.288096 AGTACTCCCTCCTATCTTCAAGAT 57.712 41.667 4.98 4.98 38.70 2.40
4704 5265 7.409408 AGTACTCCCTCCTATCTTCAAGATA 57.591 40.000 6.93 6.93 36.20 1.98
4759 5397 4.483950 ACTAGCTGAGTATTGCCCTGATA 58.516 43.478 0.00 0.00 36.27 2.15
4831 5470 3.152341 CAACCCTGATCTGAACAAAGCT 58.848 45.455 0.38 0.00 0.00 3.74
4836 5475 3.862267 CCTGATCTGAACAAAGCTACTCG 59.138 47.826 0.38 0.00 0.00 4.18
4880 5519 2.765689 TTTTCACATGGGGTCTTGGT 57.234 45.000 0.00 0.00 0.00 3.67
4929 5568 2.206576 GGATCAGTTCCACAAAGCCT 57.793 50.000 0.00 0.00 44.74 4.58
4930 5569 1.815003 GGATCAGTTCCACAAAGCCTG 59.185 52.381 0.00 0.00 44.74 4.85
4931 5570 2.508526 GATCAGTTCCACAAAGCCTGT 58.491 47.619 0.00 0.00 39.56 4.00
4932 5571 2.435372 TCAGTTCCACAAAGCCTGTT 57.565 45.000 0.00 0.00 35.47 3.16
4933 5572 2.023673 TCAGTTCCACAAAGCCTGTTG 58.976 47.619 0.00 0.00 35.47 3.33
4934 5573 1.067516 CAGTTCCACAAAGCCTGTTGG 59.932 52.381 0.00 0.00 35.47 3.77
4935 5574 1.064017 AGTTCCACAAAGCCTGTTGGA 60.064 47.619 0.00 0.00 35.47 3.53
4936 5575 1.338020 GTTCCACAAAGCCTGTTGGAG 59.662 52.381 0.00 0.00 36.90 3.86
4937 5576 0.550914 TCCACAAAGCCTGTTGGAGT 59.449 50.000 0.00 0.00 35.47 3.85
4938 5577 1.771854 TCCACAAAGCCTGTTGGAGTA 59.228 47.619 0.00 0.00 35.47 2.59
4939 5578 2.173782 TCCACAAAGCCTGTTGGAGTAA 59.826 45.455 0.00 0.00 35.47 2.24
4940 5579 2.955660 CCACAAAGCCTGTTGGAGTAAA 59.044 45.455 0.00 0.00 35.47 2.01
4941 5580 3.573967 CCACAAAGCCTGTTGGAGTAAAT 59.426 43.478 0.00 0.00 35.47 1.40
4942 5581 4.549458 CACAAAGCCTGTTGGAGTAAATG 58.451 43.478 0.00 0.00 35.47 2.32
4943 5582 4.278170 CACAAAGCCTGTTGGAGTAAATGA 59.722 41.667 0.00 0.00 35.47 2.57
4944 5583 4.278419 ACAAAGCCTGTTGGAGTAAATGAC 59.722 41.667 0.00 0.00 32.99 3.06
4945 5584 3.073274 AGCCTGTTGGAGTAAATGACC 57.927 47.619 0.00 0.00 34.57 4.02
4946 5585 2.375174 AGCCTGTTGGAGTAAATGACCA 59.625 45.455 0.00 0.00 34.57 4.02
4947 5586 2.488153 GCCTGTTGGAGTAAATGACCAC 59.512 50.000 0.00 0.00 33.20 4.16
4948 5587 2.742053 CCTGTTGGAGTAAATGACCACG 59.258 50.000 0.00 0.00 33.20 4.94
4949 5588 2.742053 CTGTTGGAGTAAATGACCACGG 59.258 50.000 0.00 0.00 33.20 4.94
4950 5589 2.081462 GTTGGAGTAAATGACCACGGG 58.919 52.381 0.00 0.00 33.20 5.28
4951 5590 1.354101 TGGAGTAAATGACCACGGGT 58.646 50.000 0.00 0.00 39.44 5.28
4952 5591 2.538222 TGGAGTAAATGACCACGGGTA 58.462 47.619 0.00 0.00 35.25 3.69
4953 5592 2.498481 TGGAGTAAATGACCACGGGTAG 59.502 50.000 0.00 0.00 35.25 3.18
4954 5593 2.547826 GAGTAAATGACCACGGGTAGC 58.452 52.381 0.00 0.00 35.25 3.58
4955 5594 1.208776 AGTAAATGACCACGGGTAGCC 59.791 52.381 0.00 0.00 35.25 3.93
4956 5595 1.208776 GTAAATGACCACGGGTAGCCT 59.791 52.381 9.73 0.00 35.25 4.58
4957 5596 0.252197 AAATGACCACGGGTAGCCTC 59.748 55.000 9.73 0.00 35.25 4.70
4958 5597 0.907704 AATGACCACGGGTAGCCTCA 60.908 55.000 9.73 6.24 35.25 3.86
4959 5598 0.691078 ATGACCACGGGTAGCCTCAT 60.691 55.000 9.73 8.41 35.25 2.90
4960 5599 1.327690 TGACCACGGGTAGCCTCATC 61.328 60.000 9.73 2.20 35.25 2.92
4961 5600 1.305802 ACCACGGGTAGCCTCATCA 60.306 57.895 9.73 0.00 32.11 3.07
4962 5601 1.330655 ACCACGGGTAGCCTCATCAG 61.331 60.000 9.73 0.00 32.11 2.90
4963 5602 1.227380 CACGGGTAGCCTCATCAGC 60.227 63.158 9.73 0.00 0.00 4.26
4964 5603 2.423446 CGGGTAGCCTCATCAGCC 59.577 66.667 9.73 0.00 0.00 4.85
4965 5604 2.832498 GGGTAGCCTCATCAGCCC 59.168 66.667 2.95 0.00 0.00 5.19
4966 5605 2.823758 GGGTAGCCTCATCAGCCCC 61.824 68.421 2.95 0.00 0.00 5.80
4967 5606 2.823758 GGTAGCCTCATCAGCCCCC 61.824 68.421 0.00 0.00 0.00 5.40
4984 5623 3.380471 CCCCCATGGTATTTCAAGACA 57.620 47.619 11.73 0.00 0.00 3.41
4985 5624 3.914771 CCCCCATGGTATTTCAAGACAT 58.085 45.455 11.73 0.00 0.00 3.06
4986 5625 3.891366 CCCCCATGGTATTTCAAGACATC 59.109 47.826 11.73 0.00 0.00 3.06
4987 5626 3.565482 CCCCATGGTATTTCAAGACATCG 59.435 47.826 11.73 0.00 0.00 3.84
4988 5627 3.565482 CCCATGGTATTTCAAGACATCGG 59.435 47.826 11.73 0.00 0.00 4.18
4989 5628 3.565482 CCATGGTATTTCAAGACATCGGG 59.435 47.826 2.57 0.00 0.00 5.14
4990 5629 3.275617 TGGTATTTCAAGACATCGGGG 57.724 47.619 0.00 0.00 0.00 5.73
4991 5630 1.947456 GGTATTTCAAGACATCGGGGC 59.053 52.381 0.00 0.00 0.00 5.80
4992 5631 1.947456 GTATTTCAAGACATCGGGGCC 59.053 52.381 0.00 0.00 0.00 5.80
4993 5632 0.748005 ATTTCAAGACATCGGGGCCG 60.748 55.000 0.00 0.00 41.35 6.13
4994 5633 2.813226 TTTCAAGACATCGGGGCCGG 62.813 60.000 4.42 4.42 40.25 6.13
5016 5655 3.267974 GCCCCTCAAGCGTCAAAG 58.732 61.111 0.00 0.00 0.00 2.77
5017 5656 1.600916 GCCCCTCAAGCGTCAAAGT 60.601 57.895 0.00 0.00 0.00 2.66
5018 5657 1.578206 GCCCCTCAAGCGTCAAAGTC 61.578 60.000 0.00 0.00 0.00 3.01
5019 5658 0.250295 CCCCTCAAGCGTCAAAGTCA 60.250 55.000 0.00 0.00 0.00 3.41
5020 5659 1.593196 CCCTCAAGCGTCAAAGTCAA 58.407 50.000 0.00 0.00 0.00 3.18
5021 5660 1.946768 CCCTCAAGCGTCAAAGTCAAA 59.053 47.619 0.00 0.00 0.00 2.69
5022 5661 2.031682 CCCTCAAGCGTCAAAGTCAAAG 60.032 50.000 0.00 0.00 0.00 2.77
5023 5662 2.031682 CCTCAAGCGTCAAAGTCAAAGG 60.032 50.000 0.00 0.00 0.00 3.11
5024 5663 2.872245 CTCAAGCGTCAAAGTCAAAGGA 59.128 45.455 0.00 0.00 0.00 3.36
5025 5664 2.612212 TCAAGCGTCAAAGTCAAAGGAC 59.388 45.455 0.00 0.00 44.66 3.85
5026 5665 1.594331 AGCGTCAAAGTCAAAGGACC 58.406 50.000 0.00 0.00 45.48 4.46
5027 5666 0.234884 GCGTCAAAGTCAAAGGACCG 59.765 55.000 0.00 0.00 45.48 4.79
5028 5667 0.234884 CGTCAAAGTCAAAGGACCGC 59.765 55.000 0.00 0.00 45.48 5.68
5029 5668 0.591659 GTCAAAGTCAAAGGACCGCC 59.408 55.000 0.00 0.00 45.48 6.13
5038 5677 3.330720 AGGACCGCCTTCTTGGGG 61.331 66.667 0.00 0.00 43.90 4.96
5068 5707 4.770874 GGCGGCCGGTTGCTAGAA 62.771 66.667 29.38 0.00 40.92 2.10
5069 5708 2.744709 GCGGCCGGTTGCTAGAAA 60.745 61.111 29.38 0.00 40.92 2.52
5070 5709 2.750888 GCGGCCGGTTGCTAGAAAG 61.751 63.158 29.38 0.00 40.92 2.62
5079 5718 4.126524 GCTAGAAAGCGGCGGAAT 57.873 55.556 9.78 0.00 39.39 3.01
5080 5719 1.935194 GCTAGAAAGCGGCGGAATC 59.065 57.895 9.78 0.00 39.39 2.52
5081 5720 1.499688 GCTAGAAAGCGGCGGAATCC 61.500 60.000 9.78 0.00 39.39 3.01
5082 5721 0.179084 CTAGAAAGCGGCGGAATCCA 60.179 55.000 9.78 0.00 0.00 3.41
5083 5722 0.179084 TAGAAAGCGGCGGAATCCAG 60.179 55.000 9.78 0.00 0.00 3.86
5084 5723 1.449601 GAAAGCGGCGGAATCCAGA 60.450 57.895 9.78 0.00 0.00 3.86
5085 5724 1.002624 AAAGCGGCGGAATCCAGAA 60.003 52.632 9.78 0.00 0.00 3.02
5086 5725 1.026718 AAAGCGGCGGAATCCAGAAG 61.027 55.000 9.78 0.00 0.00 2.85
5087 5726 2.876368 AAGCGGCGGAATCCAGAAGG 62.876 60.000 9.78 0.00 0.00 3.46
5088 5727 2.897350 CGGCGGAATCCAGAAGGC 60.897 66.667 0.00 0.00 33.74 4.35
5089 5728 2.272146 GGCGGAATCCAGAAGGCA 59.728 61.111 0.00 0.00 33.74 4.75
5090 5729 1.821332 GGCGGAATCCAGAAGGCAG 60.821 63.158 0.00 0.00 33.74 4.85
5091 5730 2.476320 GCGGAATCCAGAAGGCAGC 61.476 63.158 0.00 0.00 33.74 5.25
5092 5731 1.821332 CGGAATCCAGAAGGCAGCC 60.821 63.158 1.84 1.84 33.74 4.85
5093 5732 1.611965 GGAATCCAGAAGGCAGCCT 59.388 57.895 8.70 8.70 33.87 4.58
5094 5733 0.465278 GGAATCCAGAAGGCAGCCTC 60.465 60.000 16.53 8.64 30.89 4.70
5095 5734 0.813210 GAATCCAGAAGGCAGCCTCG 60.813 60.000 16.53 6.45 30.89 4.63
5096 5735 1.267574 AATCCAGAAGGCAGCCTCGA 61.268 55.000 16.53 8.66 30.89 4.04
5097 5736 1.684386 ATCCAGAAGGCAGCCTCGAG 61.684 60.000 16.53 5.13 30.89 4.04
5098 5737 2.186384 CAGAAGGCAGCCTCGAGG 59.814 66.667 27.83 27.83 30.89 4.63
5099 5738 2.284258 AGAAGGCAGCCTCGAGGT 60.284 61.111 31.43 16.22 37.57 3.85
5101 5740 3.672295 GAAGGCAGCCTCGAGGTGG 62.672 68.421 31.43 23.64 44.46 4.61
5109 5748 3.827898 CTCGAGGTGGGCCGACTC 61.828 72.222 18.11 15.14 40.50 3.36
5112 5751 2.043248 GAGGTGGGCCGACTCCTA 60.043 66.667 18.11 0.00 40.50 2.94
5113 5752 2.042843 AGGTGGGCCGACTCCTAG 60.043 66.667 18.11 0.00 40.50 3.02
5114 5753 3.851128 GGTGGGCCGACTCCTAGC 61.851 72.222 18.11 0.00 0.00 3.42
5115 5754 3.075005 GTGGGCCGACTCCTAGCA 61.075 66.667 11.17 0.00 0.00 3.49
5116 5755 2.759973 TGGGCCGACTCCTAGCAG 60.760 66.667 0.00 0.00 0.00 4.24
5117 5756 3.541713 GGGCCGACTCCTAGCAGG 61.542 72.222 0.00 0.00 36.46 4.85
5118 5757 4.228567 GGCCGACTCCTAGCAGGC 62.229 72.222 0.00 5.09 46.51 4.85
5119 5758 4.577246 GCCGACTCCTAGCAGGCG 62.577 72.222 0.46 0.46 45.25 5.52
5121 5760 4.577246 CGACTCCTAGCAGGCGGC 62.577 72.222 0.00 0.00 41.62 6.53
5122 5761 4.228567 GACTCCTAGCAGGCGGCC 62.229 72.222 12.11 12.11 46.50 6.13
5123 5762 4.787280 ACTCCTAGCAGGCGGCCT 62.787 66.667 17.69 17.69 46.50 5.19
5124 5763 3.922640 CTCCTAGCAGGCGGCCTC 61.923 72.222 20.97 14.09 46.50 4.70
5127 5766 4.232878 CTAGCAGGCGGCCTCCAG 62.233 72.222 20.97 12.38 46.50 3.86
5128 5767 4.777854 TAGCAGGCGGCCTCCAGA 62.778 66.667 20.97 0.00 46.50 3.86
5131 5770 3.847602 CAGGCGGCCTCCAGAGAG 61.848 72.222 20.97 1.62 40.09 3.20
5139 5778 3.535962 CTCCAGAGAGGCCGGCTC 61.536 72.222 28.56 20.98 36.39 4.70
5142 5781 2.123683 CAGAGAGGCCGGCTCCTA 60.124 66.667 28.56 0.00 36.38 2.94
5143 5782 2.197324 AGAGAGGCCGGCTCCTAG 59.803 66.667 28.56 0.00 36.38 3.02
5144 5783 3.611674 GAGAGGCCGGCTCCTAGC 61.612 72.222 28.56 8.41 41.46 3.42
5145 5784 4.465446 AGAGGCCGGCTCCTAGCA 62.465 66.667 28.56 0.00 44.75 3.49
5146 5785 3.922640 GAGGCCGGCTCCTAGCAG 61.923 72.222 28.56 0.00 44.75 4.24
5172 5811 3.577805 CCCCCATACCCTTGAAGTTAG 57.422 52.381 0.00 0.00 0.00 2.34
5173 5812 2.422945 CCCCCATACCCTTGAAGTTAGC 60.423 54.545 0.00 0.00 0.00 3.09
5174 5813 2.561569 CCCATACCCTTGAAGTTAGCG 58.438 52.381 0.00 0.00 0.00 4.26
5175 5814 1.940613 CCATACCCTTGAAGTTAGCGC 59.059 52.381 0.00 0.00 0.00 5.92
5176 5815 1.940613 CATACCCTTGAAGTTAGCGCC 59.059 52.381 2.29 0.00 0.00 6.53
5177 5816 0.251073 TACCCTTGAAGTTAGCGCCC 59.749 55.000 2.29 0.00 0.00 6.13
5178 5817 1.749258 CCCTTGAAGTTAGCGCCCC 60.749 63.158 2.29 0.00 0.00 5.80
5179 5818 1.002624 CCTTGAAGTTAGCGCCCCA 60.003 57.895 2.29 0.00 0.00 4.96
5180 5819 0.394352 CCTTGAAGTTAGCGCCCCAT 60.394 55.000 2.29 0.00 0.00 4.00
5181 5820 1.463674 CTTGAAGTTAGCGCCCCATT 58.536 50.000 2.29 0.00 0.00 3.16
5182 5821 2.639065 CTTGAAGTTAGCGCCCCATTA 58.361 47.619 2.29 0.00 0.00 1.90
5183 5822 2.032680 TGAAGTTAGCGCCCCATTAC 57.967 50.000 2.29 0.00 0.00 1.89
5184 5823 1.306148 GAAGTTAGCGCCCCATTACC 58.694 55.000 2.29 0.00 0.00 2.85
5185 5824 0.621609 AAGTTAGCGCCCCATTACCA 59.378 50.000 2.29 0.00 0.00 3.25
5186 5825 0.843984 AGTTAGCGCCCCATTACCAT 59.156 50.000 2.29 0.00 0.00 3.55
5187 5826 0.951558 GTTAGCGCCCCATTACCATG 59.048 55.000 2.29 0.00 0.00 3.66
5188 5827 0.840617 TTAGCGCCCCATTACCATGA 59.159 50.000 2.29 0.00 31.07 3.07
5189 5828 0.107831 TAGCGCCCCATTACCATGAC 59.892 55.000 2.29 0.00 31.07 3.06
5190 5829 1.453015 GCGCCCCATTACCATGACA 60.453 57.895 0.00 0.00 31.07 3.58
5191 5830 1.447317 GCGCCCCATTACCATGACAG 61.447 60.000 0.00 0.00 31.07 3.51
5192 5831 0.819259 CGCCCCATTACCATGACAGG 60.819 60.000 0.00 0.00 31.07 4.00
5193 5832 0.550914 GCCCCATTACCATGACAGGA 59.449 55.000 0.00 0.00 31.07 3.86
5194 5833 1.750682 GCCCCATTACCATGACAGGAC 60.751 57.143 0.00 0.00 31.07 3.85
5195 5834 1.475034 CCCCATTACCATGACAGGACG 60.475 57.143 0.00 0.00 31.07 4.79
5196 5835 1.475034 CCCATTACCATGACAGGACGG 60.475 57.143 0.00 0.00 31.07 4.79
5197 5836 1.475034 CCATTACCATGACAGGACGGG 60.475 57.143 0.00 0.00 31.07 5.28
5198 5837 0.837272 ATTACCATGACAGGACGGGG 59.163 55.000 0.00 0.00 0.00 5.73
5199 5838 0.545787 TTACCATGACAGGACGGGGT 60.546 55.000 0.00 0.00 0.00 4.95
5200 5839 0.974010 TACCATGACAGGACGGGGTC 60.974 60.000 0.00 0.00 34.63 4.46
5201 5840 2.184322 CATGACAGGACGGGGTCG 59.816 66.667 0.00 0.00 43.02 4.79
5202 5841 3.075005 ATGACAGGACGGGGTCGG 61.075 66.667 0.00 0.00 41.39 4.79
5220 5859 4.736896 GCCACCTCCACGTCCGAC 62.737 72.222 0.00 0.00 0.00 4.79
5221 5860 3.299977 CCACCTCCACGTCCGACA 61.300 66.667 0.00 0.00 0.00 4.35
5222 5861 2.258591 CACCTCCACGTCCGACAG 59.741 66.667 0.00 0.00 0.00 3.51
5223 5862 3.681835 ACCTCCACGTCCGACAGC 61.682 66.667 0.00 0.00 0.00 4.40
5224 5863 3.374402 CCTCCACGTCCGACAGCT 61.374 66.667 0.00 0.00 0.00 4.24
5225 5864 2.179517 CTCCACGTCCGACAGCTC 59.820 66.667 0.00 0.00 0.00 4.09
5226 5865 3.343788 CTCCACGTCCGACAGCTCC 62.344 68.421 0.00 0.00 0.00 4.70
5227 5866 4.436998 CCACGTCCGACAGCTCCC 62.437 72.222 0.00 0.00 0.00 4.30
5228 5867 3.680786 CACGTCCGACAGCTCCCA 61.681 66.667 0.00 0.00 0.00 4.37
5229 5868 2.680352 ACGTCCGACAGCTCCCAT 60.680 61.111 0.00 0.00 0.00 4.00
5230 5869 2.202797 CGTCCGACAGCTCCCATG 60.203 66.667 0.00 0.00 0.00 3.66
5231 5870 2.982130 GTCCGACAGCTCCCATGT 59.018 61.111 0.00 0.00 0.00 3.21
5232 5871 1.663379 CGTCCGACAGCTCCCATGTA 61.663 60.000 0.00 0.00 0.00 2.29
5233 5872 0.179108 GTCCGACAGCTCCCATGTAC 60.179 60.000 0.00 0.00 0.00 2.90
5234 5873 0.613572 TCCGACAGCTCCCATGTACA 60.614 55.000 0.00 0.00 0.00 2.90
5235 5874 0.460284 CCGACAGCTCCCATGTACAC 60.460 60.000 0.00 0.00 0.00 2.90
5236 5875 0.246360 CGACAGCTCCCATGTACACA 59.754 55.000 0.00 0.00 0.00 3.72
5237 5876 1.134699 CGACAGCTCCCATGTACACAT 60.135 52.381 0.00 0.00 36.96 3.21
5238 5877 2.555199 GACAGCTCCCATGTACACATC 58.445 52.381 0.00 0.00 33.61 3.06
5239 5878 1.210478 ACAGCTCCCATGTACACATCC 59.790 52.381 0.00 0.00 33.61 3.51
5240 5879 0.465705 AGCTCCCATGTACACATCCG 59.534 55.000 0.00 0.00 33.61 4.18
5241 5880 0.532862 GCTCCCATGTACACATCCGG 60.533 60.000 0.00 0.00 33.61 5.14
5242 5881 0.532862 CTCCCATGTACACATCCGGC 60.533 60.000 0.00 0.00 33.61 6.13
5243 5882 1.223211 CCCATGTACACATCCGGCA 59.777 57.895 0.00 0.00 33.61 5.69
5244 5883 1.095228 CCCATGTACACATCCGGCAC 61.095 60.000 0.00 0.00 33.61 5.01
5245 5884 1.428370 CCATGTACACATCCGGCACG 61.428 60.000 0.00 0.00 43.55 5.34
5278 5917 1.233019 GCTCATGCGGCTAATGATGT 58.767 50.000 0.00 0.00 33.69 3.06
5279 5918 1.069432 GCTCATGCGGCTAATGATGTG 60.069 52.381 0.00 0.00 33.69 3.21
5280 5919 1.534163 CTCATGCGGCTAATGATGTGG 59.466 52.381 0.00 0.00 33.69 4.17
5281 5920 0.594602 CATGCGGCTAATGATGTGGG 59.405 55.000 0.00 0.00 0.00 4.61
5282 5921 0.538057 ATGCGGCTAATGATGTGGGG 60.538 55.000 0.00 0.00 0.00 4.96
5283 5922 2.555547 GCGGCTAATGATGTGGGGC 61.556 63.158 0.00 0.00 0.00 5.80
5284 5923 1.898574 CGGCTAATGATGTGGGGCC 60.899 63.158 0.00 0.00 36.60 5.80
5285 5924 1.898574 GGCTAATGATGTGGGGCCG 60.899 63.158 0.00 0.00 0.00 6.13
5286 5925 1.898574 GCTAATGATGTGGGGCCGG 60.899 63.158 0.00 0.00 0.00 6.13
5287 5926 1.228245 CTAATGATGTGGGGCCGGG 60.228 63.158 2.18 0.00 0.00 5.73
5288 5927 3.429372 TAATGATGTGGGGCCGGGC 62.429 63.158 22.00 22.00 0.00 6.13
5300 5939 4.115199 CCGGGCTTGGAGGGGAAG 62.115 72.222 0.00 0.00 0.00 3.46
5301 5940 4.803908 CGGGCTTGGAGGGGAAGC 62.804 72.222 0.00 0.00 44.32 3.86
5302 5941 3.661648 GGGCTTGGAGGGGAAGCA 61.662 66.667 0.00 0.00 46.43 3.91
5303 5942 2.361737 GGCTTGGAGGGGAAGCAC 60.362 66.667 0.00 0.00 46.43 4.40
5304 5943 2.759795 GCTTGGAGGGGAAGCACT 59.240 61.111 0.00 0.00 44.43 4.40
5305 5944 1.377856 GCTTGGAGGGGAAGCACTC 60.378 63.158 0.00 0.00 44.43 3.51
5306 5945 1.078848 CTTGGAGGGGAAGCACTCG 60.079 63.158 0.00 0.00 34.58 4.18
5307 5946 2.527951 CTTGGAGGGGAAGCACTCGG 62.528 65.000 0.00 0.00 34.58 4.63
5308 5947 4.475135 GGAGGGGAAGCACTCGGC 62.475 72.222 0.00 0.00 45.30 5.54
5319 5958 4.873129 ACTCGGCGCGCCACATAG 62.873 66.667 45.26 35.17 35.37 2.23
5342 5981 3.710722 CAGCAGGTCCGAGCCCTT 61.711 66.667 5.82 0.00 0.00 3.95
5343 5982 3.710722 AGCAGGTCCGAGCCCTTG 61.711 66.667 5.82 0.00 0.00 3.61
5344 5983 3.706373 GCAGGTCCGAGCCCTTGA 61.706 66.667 0.00 0.00 0.00 3.02
5345 5984 2.581354 CAGGTCCGAGCCCTTGAG 59.419 66.667 0.00 0.00 0.00 3.02
5346 5985 2.685380 AGGTCCGAGCCCTTGAGG 60.685 66.667 0.00 0.00 39.47 3.86
5355 5994 2.922234 CCCTTGAGGCCCTCCATC 59.078 66.667 8.62 0.00 33.74 3.51
5356 5995 1.695597 CCCTTGAGGCCCTCCATCT 60.696 63.158 8.62 0.00 33.74 2.90
5357 5996 1.704007 CCCTTGAGGCCCTCCATCTC 61.704 65.000 8.62 0.00 33.74 2.75
5358 5997 1.704007 CCTTGAGGCCCTCCATCTCC 61.704 65.000 8.62 0.00 33.74 3.71
5359 5998 2.037620 CTTGAGGCCCTCCATCTCCG 62.038 65.000 8.62 0.00 33.74 4.63
5360 5999 2.444895 GAGGCCCTCCATCTCCGT 60.445 66.667 0.00 0.00 33.74 4.69
5361 6000 2.444895 AGGCCCTCCATCTCCGTC 60.445 66.667 0.00 0.00 33.74 4.79
5362 6001 2.764128 GGCCCTCCATCTCCGTCA 60.764 66.667 0.00 0.00 0.00 4.35
5363 6002 2.143419 GGCCCTCCATCTCCGTCAT 61.143 63.158 0.00 0.00 0.00 3.06
5364 6003 1.369321 GCCCTCCATCTCCGTCATC 59.631 63.158 0.00 0.00 0.00 2.92
5365 6004 1.402896 GCCCTCCATCTCCGTCATCA 61.403 60.000 0.00 0.00 0.00 3.07
5366 6005 0.390860 CCCTCCATCTCCGTCATCAC 59.609 60.000 0.00 0.00 0.00 3.06
5367 6006 0.390860 CCTCCATCTCCGTCATCACC 59.609 60.000 0.00 0.00 0.00 4.02
5368 6007 1.407936 CTCCATCTCCGTCATCACCT 58.592 55.000 0.00 0.00 0.00 4.00
5369 6008 1.068281 CTCCATCTCCGTCATCACCTG 59.932 57.143 0.00 0.00 0.00 4.00
5370 6009 1.114627 CCATCTCCGTCATCACCTGA 58.885 55.000 0.00 0.00 0.00 3.86
5371 6010 1.482182 CCATCTCCGTCATCACCTGAA 59.518 52.381 0.00 0.00 35.07 3.02
5372 6011 2.482664 CCATCTCCGTCATCACCTGAAG 60.483 54.545 0.00 0.00 35.07 3.02
5373 6012 1.924731 TCTCCGTCATCACCTGAAGT 58.075 50.000 0.00 0.00 35.07 3.01
5374 6013 1.819288 TCTCCGTCATCACCTGAAGTC 59.181 52.381 0.00 0.00 35.07 3.01
5375 6014 0.526211 TCCGTCATCACCTGAAGTCG 59.474 55.000 0.00 0.00 35.07 4.18
5376 6015 0.458543 CCGTCATCACCTGAAGTCGG 60.459 60.000 2.65 2.65 35.07 4.79
5378 6017 0.741221 GTCATCACCTGAAGTCGGGC 60.741 60.000 6.06 0.00 46.43 6.13
5379 6018 1.811266 CATCACCTGAAGTCGGGCG 60.811 63.158 6.06 0.00 46.43 6.13
5380 6019 1.982395 ATCACCTGAAGTCGGGCGA 60.982 57.895 6.06 2.65 46.43 5.54
5381 6020 1.949847 ATCACCTGAAGTCGGGCGAG 61.950 60.000 6.06 0.00 46.43 5.03
5382 6021 3.382832 ACCTGAAGTCGGGCGAGG 61.383 66.667 6.06 0.00 46.43 4.63
5383 6022 4.148825 CCTGAAGTCGGGCGAGGG 62.149 72.222 0.00 0.00 35.28 4.30
5384 6023 4.821589 CTGAAGTCGGGCGAGGGC 62.822 72.222 0.00 0.00 38.90 5.19
5417 6056 4.286320 CGATAGGGCGCTCGGCTT 62.286 66.667 6.54 10.54 42.94 4.35
5418 6057 2.663188 GATAGGGCGCTCGGCTTG 60.663 66.667 6.54 0.00 42.94 4.01
5419 6058 3.447025 GATAGGGCGCTCGGCTTGT 62.447 63.158 6.54 6.36 42.94 3.16
5420 6059 2.083835 GATAGGGCGCTCGGCTTGTA 62.084 60.000 6.54 5.84 42.94 2.41
5421 6060 2.365095 ATAGGGCGCTCGGCTTGTAC 62.365 60.000 6.54 0.00 42.94 2.90
5422 6061 4.452733 GGGCGCTCGGCTTGTACT 62.453 66.667 7.64 0.00 42.94 2.73
5423 6062 3.188786 GGCGCTCGGCTTGTACTG 61.189 66.667 7.64 0.00 42.94 2.74
5424 6063 3.854459 GCGCTCGGCTTGTACTGC 61.854 66.667 0.00 0.00 39.11 4.40
5425 6064 3.188786 CGCTCGGCTTGTACTGCC 61.189 66.667 16.89 16.89 46.42 4.85
5433 6072 0.721718 GCTTGTACTGCCAGTTAGCG 59.278 55.000 1.02 0.00 34.65 4.26
5434 6073 0.721718 CTTGTACTGCCAGTTAGCGC 59.278 55.000 1.02 0.00 34.65 5.92
5435 6074 1.011968 TTGTACTGCCAGTTAGCGCG 61.012 55.000 1.02 0.00 34.65 6.86
5436 6075 2.508439 TACTGCCAGTTAGCGCGC 60.508 61.111 26.66 26.66 34.65 6.86
5462 6101 4.802051 AGGCGGGCCGACTACGTA 62.802 66.667 37.32 0.00 46.54 3.57
5463 6102 3.825611 GGCGGGCCGACTACGTAA 61.826 66.667 33.44 0.00 37.88 3.18
5465 6104 2.278401 CGGGCCGACTACGTAAGC 60.278 66.667 24.41 0.00 45.62 3.09
5466 6105 2.105729 GGGCCGACTACGTAAGCC 59.894 66.667 14.17 14.17 41.28 4.35
5467 6106 2.278401 GGCCGACTACGTAAGCCG 60.278 66.667 9.12 6.83 45.62 5.52
5468 6107 2.278401 GCCGACTACGTAAGCCGG 60.278 66.667 19.44 19.44 42.24 6.13
5469 6108 2.278401 CCGACTACGTAAGCCGGC 60.278 66.667 21.89 21.89 42.24 6.13
5470 6109 2.486504 CGACTACGTAAGCCGGCA 59.513 61.111 31.54 5.56 42.24 5.69
5471 6110 1.153978 CGACTACGTAAGCCGGCAA 60.154 57.895 31.54 14.16 42.24 4.52
5472 6111 1.138047 CGACTACGTAAGCCGGCAAG 61.138 60.000 31.54 18.48 42.24 4.01
5473 6112 0.108945 GACTACGTAAGCCGGCAAGT 60.109 55.000 31.54 23.13 42.24 3.16
5474 6113 0.319405 ACTACGTAAGCCGGCAAGTT 59.681 50.000 31.54 17.33 42.24 2.66
5475 6114 0.719465 CTACGTAAGCCGGCAAGTTG 59.281 55.000 31.54 18.19 42.24 3.16
5476 6115 0.317799 TACGTAAGCCGGCAAGTTGA 59.682 50.000 31.54 6.59 42.24 3.18
5477 6116 0.321298 ACGTAAGCCGGCAAGTTGAT 60.321 50.000 31.54 1.71 42.24 2.57
5478 6117 0.096976 CGTAAGCCGGCAAGTTGATG 59.903 55.000 31.54 1.76 0.00 3.07
5479 6118 1.165270 GTAAGCCGGCAAGTTGATGT 58.835 50.000 31.54 0.00 0.00 3.06
5480 6119 2.352388 GTAAGCCGGCAAGTTGATGTA 58.648 47.619 31.54 3.05 0.00 2.29
5481 6120 1.453155 AAGCCGGCAAGTTGATGTAG 58.547 50.000 31.54 0.00 0.00 2.74
5482 6121 0.324943 AGCCGGCAAGTTGATGTAGT 59.675 50.000 31.54 0.00 0.00 2.73
5483 6122 0.727398 GCCGGCAAGTTGATGTAGTC 59.273 55.000 24.80 0.00 0.00 2.59
5484 6123 1.369625 CCGGCAAGTTGATGTAGTCC 58.630 55.000 7.16 0.00 0.00 3.85
5485 6124 1.338674 CCGGCAAGTTGATGTAGTCCA 60.339 52.381 7.16 0.00 0.00 4.02
5486 6125 2.422597 CGGCAAGTTGATGTAGTCCAA 58.577 47.619 7.16 0.00 0.00 3.53
5487 6126 2.159627 CGGCAAGTTGATGTAGTCCAAC 59.840 50.000 7.16 0.00 42.02 3.77
5488 6127 2.159627 GGCAAGTTGATGTAGTCCAACG 59.840 50.000 7.16 0.00 45.19 4.10
5489 6128 2.806244 GCAAGTTGATGTAGTCCAACGT 59.194 45.455 7.16 0.00 45.19 3.99
5490 6129 3.120649 GCAAGTTGATGTAGTCCAACGTC 60.121 47.826 7.16 0.00 45.19 4.34
5491 6130 2.942710 AGTTGATGTAGTCCAACGTCG 58.057 47.619 0.00 0.00 45.19 5.12
5492 6131 2.555325 AGTTGATGTAGTCCAACGTCGA 59.445 45.455 0.00 0.00 45.19 4.20
5493 6132 3.005050 AGTTGATGTAGTCCAACGTCGAA 59.995 43.478 0.00 0.00 45.19 3.71
5494 6133 3.861276 TGATGTAGTCCAACGTCGAAT 57.139 42.857 0.00 0.00 38.07 3.34
5495 6134 3.507786 TGATGTAGTCCAACGTCGAATG 58.492 45.455 0.00 0.00 38.07 2.67
5496 6135 3.191791 TGATGTAGTCCAACGTCGAATGA 59.808 43.478 0.00 0.00 38.07 2.57
5497 6136 3.646611 TGTAGTCCAACGTCGAATGAA 57.353 42.857 0.00 0.00 0.00 2.57
5498 6137 3.571571 TGTAGTCCAACGTCGAATGAAG 58.428 45.455 0.00 0.00 0.00 3.02
5499 6138 2.080286 AGTCCAACGTCGAATGAAGG 57.920 50.000 0.00 0.00 0.00 3.46
5500 6139 1.343465 AGTCCAACGTCGAATGAAGGT 59.657 47.619 0.00 0.00 0.00 3.50
5501 6140 2.140717 GTCCAACGTCGAATGAAGGTT 58.859 47.619 0.00 0.00 0.00 3.50
5502 6141 2.157085 GTCCAACGTCGAATGAAGGTTC 59.843 50.000 0.00 0.00 0.00 3.62
5503 6142 2.036733 TCCAACGTCGAATGAAGGTTCT 59.963 45.455 0.00 0.00 0.00 3.01
5504 6143 2.806244 CCAACGTCGAATGAAGGTTCTT 59.194 45.455 0.00 0.00 0.00 2.52
5505 6144 3.991773 CCAACGTCGAATGAAGGTTCTTA 59.008 43.478 0.00 0.00 0.00 2.10
5506 6145 4.449743 CCAACGTCGAATGAAGGTTCTTAA 59.550 41.667 0.00 0.00 0.00 1.85
5507 6146 5.121768 CCAACGTCGAATGAAGGTTCTTAAT 59.878 40.000 0.00 0.00 0.00 1.40
5508 6147 5.779806 ACGTCGAATGAAGGTTCTTAATG 57.220 39.130 0.00 0.00 0.00 1.90
5509 6148 5.235516 ACGTCGAATGAAGGTTCTTAATGT 58.764 37.500 0.00 0.00 0.00 2.71
5510 6149 6.392354 ACGTCGAATGAAGGTTCTTAATGTA 58.608 36.000 0.00 0.00 0.00 2.29
5511 6150 6.869913 ACGTCGAATGAAGGTTCTTAATGTAA 59.130 34.615 0.00 0.00 0.00 2.41
5512 6151 7.385752 ACGTCGAATGAAGGTTCTTAATGTAAA 59.614 33.333 0.00 0.00 0.00 2.01
5513 6152 8.225107 CGTCGAATGAAGGTTCTTAATGTAAAA 58.775 33.333 0.00 0.00 0.00 1.52
5514 6153 9.543018 GTCGAATGAAGGTTCTTAATGTAAAAG 57.457 33.333 0.00 0.00 0.00 2.27
5515 6154 9.280174 TCGAATGAAGGTTCTTAATGTAAAAGT 57.720 29.630 0.00 0.00 0.00 2.66
5520 6159 9.498176 TGAAGGTTCTTAATGTAAAAGTAGGAC 57.502 33.333 0.00 0.00 0.00 3.85
5521 6160 9.722184 GAAGGTTCTTAATGTAAAAGTAGGACT 57.278 33.333 0.00 0.00 0.00 3.85
5523 6162 9.722184 AGGTTCTTAATGTAAAAGTAGGACTTC 57.278 33.333 0.00 0.00 37.47 3.01
5524 6163 9.722184 GGTTCTTAATGTAAAAGTAGGACTTCT 57.278 33.333 0.00 0.00 37.47 2.85
5526 6165 8.773404 TCTTAATGTAAAAGTAGGACTTCTGC 57.227 34.615 0.00 0.00 37.47 4.26
5527 6166 7.822822 TCTTAATGTAAAAGTAGGACTTCTGCC 59.177 37.037 0.00 0.00 37.47 4.85
5528 6167 4.967084 TGTAAAAGTAGGACTTCTGCCA 57.033 40.909 0.00 0.00 37.47 4.92
5529 6168 4.638304 TGTAAAAGTAGGACTTCTGCCAC 58.362 43.478 0.00 0.00 37.47 5.01
5530 6169 3.857157 AAAAGTAGGACTTCTGCCACA 57.143 42.857 0.00 0.00 37.47 4.17
5531 6170 3.409026 AAAGTAGGACTTCTGCCACAG 57.591 47.619 0.00 0.00 37.47 3.66
5532 6171 2.016905 AGTAGGACTTCTGCCACAGT 57.983 50.000 0.00 0.00 32.61 3.55
5533 6172 2.330216 AGTAGGACTTCTGCCACAGTT 58.670 47.619 0.00 0.00 32.61 3.16
5534 6173 2.706190 AGTAGGACTTCTGCCACAGTTT 59.294 45.455 0.00 0.00 32.61 2.66
5535 6174 1.972872 AGGACTTCTGCCACAGTTTG 58.027 50.000 0.00 0.00 32.61 2.93
5536 6175 7.946858 AAGTAGGACTTCTGCCACAGTTTGG 62.947 48.000 0.00 0.00 40.68 3.28
5544 6183 1.080569 CCACAGTTTGGCCGATTGC 60.081 57.895 0.00 0.00 39.07 3.56
5545 6184 1.659233 CACAGTTTGGCCGATTGCA 59.341 52.632 0.00 0.00 43.89 4.08
5546 6185 0.387622 CACAGTTTGGCCGATTGCAG 60.388 55.000 0.00 0.00 43.89 4.41
5547 6186 1.444895 CAGTTTGGCCGATTGCAGC 60.445 57.895 0.00 0.00 43.89 5.25
5548 6187 1.902918 AGTTTGGCCGATTGCAGCA 60.903 52.632 0.00 0.00 43.89 4.41
5549 6188 1.444895 GTTTGGCCGATTGCAGCAG 60.445 57.895 0.00 0.00 43.89 4.24
5550 6189 2.638354 TTTGGCCGATTGCAGCAGG 61.638 57.895 0.00 0.00 43.89 4.85
5552 6191 4.802051 GGCCGATTGCAGCAGGGA 62.802 66.667 12.15 0.00 43.89 4.20
5553 6192 3.207669 GCCGATTGCAGCAGGGAG 61.208 66.667 12.15 0.00 40.77 4.30
5554 6193 2.586245 CCGATTGCAGCAGGGAGA 59.414 61.111 0.00 0.00 0.00 3.71
5555 6194 1.817099 CCGATTGCAGCAGGGAGAC 60.817 63.158 0.00 0.00 0.00 3.36
5556 6195 1.078918 CGATTGCAGCAGGGAGACA 60.079 57.895 0.00 0.00 0.00 3.41
5557 6196 1.088340 CGATTGCAGCAGGGAGACAG 61.088 60.000 0.00 0.00 0.00 3.51
5558 6197 0.251354 GATTGCAGCAGGGAGACAGA 59.749 55.000 0.00 0.00 0.00 3.41
5559 6198 0.035630 ATTGCAGCAGGGAGACAGAC 60.036 55.000 0.00 0.00 0.00 3.51
5560 6199 2.125753 GCAGCAGGGAGACAGACG 60.126 66.667 0.00 0.00 0.00 4.18
5561 6200 2.575993 CAGCAGGGAGACAGACGG 59.424 66.667 0.00 0.00 0.00 4.79
5562 6201 2.681778 AGCAGGGAGACAGACGGG 60.682 66.667 0.00 0.00 0.00 5.28
5563 6202 2.680352 GCAGGGAGACAGACGGGA 60.680 66.667 0.00 0.00 0.00 5.14
5564 6203 2.283529 GCAGGGAGACAGACGGGAA 61.284 63.158 0.00 0.00 0.00 3.97
5565 6204 1.893786 CAGGGAGACAGACGGGAAG 59.106 63.158 0.00 0.00 0.00 3.46
5566 6205 1.985116 AGGGAGACAGACGGGAAGC 60.985 63.158 0.00 0.00 0.00 3.86
5567 6206 2.182030 GGAGACAGACGGGAAGCG 59.818 66.667 0.00 0.00 0.00 4.68
5568 6207 2.182030 GAGACAGACGGGAAGCGG 59.818 66.667 0.00 0.00 0.00 5.52
5569 6208 2.600769 AGACAGACGGGAAGCGGT 60.601 61.111 0.00 0.00 0.00 5.68
5570 6209 2.156051 GAGACAGACGGGAAGCGGTT 62.156 60.000 0.00 0.00 0.00 4.44
5571 6210 1.737008 GACAGACGGGAAGCGGTTC 60.737 63.158 18.86 18.86 0.00 3.62
5578 6217 3.056328 GGAAGCGGTTCCCAGCAC 61.056 66.667 31.62 9.03 46.11 4.40
5579 6218 3.056328 GAAGCGGTTCCCAGCACC 61.056 66.667 16.42 0.00 35.48 5.01
5580 6219 4.660938 AAGCGGTTCCCAGCACCC 62.661 66.667 0.00 0.00 35.48 4.61
5584 6223 4.717313 GGTTCCCAGCACCCGGAC 62.717 72.222 0.73 0.00 0.00 4.79
5649 6288 3.741476 GCGGTGCCAAGCTTGAGG 61.741 66.667 28.05 13.31 0.00 3.86
5650 6289 2.281761 CGGTGCCAAGCTTGAGGT 60.282 61.111 28.05 0.00 0.00 3.85
5651 6290 1.003839 CGGTGCCAAGCTTGAGGTA 60.004 57.895 28.05 8.85 0.00 3.08
5652 6291 1.021390 CGGTGCCAAGCTTGAGGTAG 61.021 60.000 28.05 11.48 0.00 3.18
5653 6292 0.324943 GGTGCCAAGCTTGAGGTAGA 59.675 55.000 28.05 1.74 0.00 2.59
5654 6293 1.271379 GGTGCCAAGCTTGAGGTAGAA 60.271 52.381 28.05 1.76 0.00 2.10
5655 6294 2.079925 GTGCCAAGCTTGAGGTAGAAG 58.920 52.381 28.05 9.25 0.00 2.85
5656 6295 1.090728 GCCAAGCTTGAGGTAGAAGC 58.909 55.000 28.05 15.37 45.22 3.86
5657 6296 1.611673 GCCAAGCTTGAGGTAGAAGCA 60.612 52.381 28.05 0.00 46.93 3.91
5658 6297 2.079925 CCAAGCTTGAGGTAGAAGCAC 58.920 52.381 28.05 0.00 46.93 4.40
5659 6298 2.289945 CCAAGCTTGAGGTAGAAGCACT 60.290 50.000 28.05 0.00 46.93 4.40
5660 6299 2.999355 CAAGCTTGAGGTAGAAGCACTC 59.001 50.000 22.31 0.00 46.93 3.51
5661 6300 2.534990 AGCTTGAGGTAGAAGCACTCT 58.465 47.619 7.20 0.00 46.93 3.24
5662 6301 2.495669 AGCTTGAGGTAGAAGCACTCTC 59.504 50.000 7.20 0.00 46.93 3.20
5663 6302 2.418060 GCTTGAGGTAGAAGCACTCTCC 60.418 54.545 0.00 0.00 44.43 3.71
5664 6303 1.853963 TGAGGTAGAAGCACTCTCCC 58.146 55.000 0.00 0.00 35.41 4.30
5665 6304 1.116308 GAGGTAGAAGCACTCTCCCC 58.884 60.000 0.00 0.00 35.41 4.81
5666 6305 0.413832 AGGTAGAAGCACTCTCCCCA 59.586 55.000 0.00 0.00 35.41 4.96
5667 6306 0.827368 GGTAGAAGCACTCTCCCCAG 59.173 60.000 0.00 0.00 35.41 4.45
5668 6307 1.619977 GGTAGAAGCACTCTCCCCAGA 60.620 57.143 0.00 0.00 35.41 3.86
5678 6317 2.649742 TCTCCCCAGAGATCAAAGGT 57.350 50.000 0.00 0.00 44.42 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.024048 CGAGATTTACAAACCACTTGCTGT 60.024 41.667 0.00 0.00 38.75 4.40
18 19 3.234386 GCGAGATTTACAAACCACTTGC 58.766 45.455 0.00 0.00 38.75 4.01
29 30 5.880341 AGCATTTAAACTGGCGAGATTTAC 58.120 37.500 1.44 0.00 0.00 2.01
79 80 7.215789 TGTTTTCTACATCAACCAAAATGCAT 58.784 30.769 0.00 0.00 0.00 3.96
80 81 6.577103 TGTTTTCTACATCAACCAAAATGCA 58.423 32.000 0.00 0.00 0.00 3.96
81 82 7.656707 ATGTTTTCTACATCAACCAAAATGC 57.343 32.000 0.00 0.00 44.15 3.56
98 105 9.541143 TGGTTCTCTCCAAATTTAAATGTTTTC 57.459 29.630 0.39 0.00 34.24 2.29
99 106 9.898152 TTGGTTCTCTCCAAATTTAAATGTTTT 57.102 25.926 0.39 0.00 43.40 2.43
122 129 5.966503 TCGTTTCGTAATTCAAACACTTTGG 59.033 36.000 7.82 0.00 40.98 3.28
124 131 6.778108 ACTCGTTTCGTAATTCAAACACTTT 58.222 32.000 7.82 0.00 32.89 2.66
245 252 1.536072 GCAGAGTCGTCATATCGGCAA 60.536 52.381 0.00 0.00 37.93 4.52
285 292 8.248945 CGGTATAACTAGGACCAAATATCGATT 58.751 37.037 1.71 0.00 32.39 3.34
347 354 1.656818 GGTGTGAATGGTCATGCCCG 61.657 60.000 4.07 0.00 35.80 6.13
366 373 2.258013 TTCGCTCTTGGGGCAAACG 61.258 57.895 0.00 0.00 0.00 3.60
376 383 3.493767 AAAAGGAGAAGGTTCGCTCTT 57.506 42.857 0.00 0.00 0.00 2.85
391 398 3.196685 AGAGGACGAGGAGATGAAAAAGG 59.803 47.826 0.00 0.00 0.00 3.11
463 487 0.734889 GGATCCACATTCACGGCTTG 59.265 55.000 6.95 0.00 0.00 4.01
477 501 2.618709 GGGATGACAAAATCGTGGATCC 59.381 50.000 4.20 4.20 33.72 3.36
501 525 1.966451 GAAGCGGACTTGTGGTGGG 60.966 63.158 0.00 0.00 35.82 4.61
522 546 2.125552 CGCATGAGGTGAAGCGGA 60.126 61.111 0.00 0.00 45.83 5.54
554 587 1.005394 ACCGTTGACCATGGTCGTC 60.005 57.895 34.01 27.27 41.55 4.20
557 590 0.036765 TAGCACCGTTGACCATGGTC 60.037 55.000 33.97 33.97 43.82 4.02
602 636 0.762418 TGACACAACACCCTTCGGAT 59.238 50.000 0.00 0.00 0.00 4.18
605 639 1.194547 CGAATGACACAACACCCTTCG 59.805 52.381 0.00 0.00 0.00 3.79
612 646 0.530870 TGGCGTCGAATGACACAACA 60.531 50.000 0.00 0.00 45.80 3.33
619 653 3.469008 AGGATTATTGGCGTCGAATGA 57.531 42.857 0.00 0.00 0.00 2.57
682 716 2.042843 GAGGGAGAAGAGGCCGGA 60.043 66.667 5.05 0.00 0.00 5.14
685 719 3.855853 GGCGAGGGAGAAGAGGCC 61.856 72.222 0.00 0.00 0.00 5.19
711 745 0.322008 TGTTATGCCGGTGTGATGCA 60.322 50.000 1.90 0.00 39.68 3.96
726 760 2.063266 GACTGTCGGACGCAAATGTTA 58.937 47.619 3.34 0.00 0.00 2.41
966 1008 1.345089 TGGCTTTGCTTCGTAGTGGTA 59.655 47.619 0.00 0.00 0.00 3.25
967 1009 0.107831 TGGCTTTGCTTCGTAGTGGT 59.892 50.000 0.00 0.00 0.00 4.16
985 1029 1.064389 GGGAATGGGGGTTTCTCTCTG 60.064 57.143 0.00 0.00 0.00 3.35
1562 1610 2.304901 TACATGATGTCGGGCACGGG 62.305 60.000 9.32 0.00 41.39 5.28
1758 1806 6.435904 ACCGGGAGATTTTGTGAATTGAATTA 59.564 34.615 6.32 0.00 0.00 1.40
1765 1813 3.895041 ACAAACCGGGAGATTTTGTGAAT 59.105 39.130 16.70 0.00 41.35 2.57
1820 1868 1.079543 AGCAGAGCACACCATCGTC 60.080 57.895 0.00 0.00 0.00 4.20
1861 1909 2.930040 ACACGAATCCGATCACATTGAC 59.070 45.455 0.00 0.00 39.50 3.18
1866 1914 2.223180 CGAGTACACGAATCCGATCACA 60.223 50.000 6.90 0.00 39.50 3.58
1912 1960 1.270826 TCTCTTCCTCGTCAAGTGCAG 59.729 52.381 0.00 0.00 0.00 4.41
1972 2020 2.024655 AGATGCAAACCTGATCCATGGT 60.025 45.455 12.58 0.00 38.35 3.55
2037 2085 0.376152 GATCACATGACTTGCAGGCG 59.624 55.000 0.00 0.00 0.00 5.52
2038 2086 1.747709 AGATCACATGACTTGCAGGC 58.252 50.000 0.00 0.00 0.00 4.85
2074 2122 5.003160 TCACCATGATGACTTTGTACCTTG 58.997 41.667 0.00 0.00 0.00 3.61
2192 2240 5.221303 GCATACCAATACCATGAAGCACAAT 60.221 40.000 0.00 0.00 0.00 2.71
2451 2499 9.956720 TCGTCATATATGAAGTATGCATATCAG 57.043 33.333 22.70 0.00 44.07 2.90
2455 2503 8.912988 TCCATCGTCATATATGAAGTATGCATA 58.087 33.333 22.70 1.16 41.86 3.14
2456 2504 7.708322 GTCCATCGTCATATATGAAGTATGCAT 59.292 37.037 22.70 3.79 38.50 3.96
2457 2505 7.035612 GTCCATCGTCATATATGAAGTATGCA 58.964 38.462 22.70 12.04 38.75 3.96
2865 3008 2.609002 CACAAAAAGAGGCAAAACAGGC 59.391 45.455 0.00 0.00 0.00 4.85
2875 3018 7.026631 TCACAACTTGATACACAAAAAGAGG 57.973 36.000 0.00 0.00 38.08 3.69
3194 3337 8.030106 CCTTAAGGCTGCTAGTGTATTCTATAC 58.970 40.741 9.00 0.00 0.00 1.47
3195 3338 7.728981 ACCTTAAGGCTGCTAGTGTATTCTATA 59.271 37.037 21.92 0.00 39.32 1.31
3196 3339 6.555360 ACCTTAAGGCTGCTAGTGTATTCTAT 59.445 38.462 21.92 0.00 39.32 1.98
3197 3340 5.897824 ACCTTAAGGCTGCTAGTGTATTCTA 59.102 40.000 21.92 0.00 39.32 2.10
3203 3346 1.978580 ACACCTTAAGGCTGCTAGTGT 59.021 47.619 21.92 13.08 39.32 3.55
3223 3366 4.760530 TTCGAGGCCTAGTACACTAGTA 57.239 45.455 4.42 0.00 43.34 1.82
3228 3483 3.057033 TGTTCTTTCGAGGCCTAGTACAC 60.057 47.826 4.42 0.95 0.00 2.90
3318 3573 4.862018 TCGGATTCGGAAATGAAATTTTGC 59.138 37.500 0.00 0.00 40.09 3.68
3331 3586 4.509616 TGAAGCTTTAAATCGGATTCGGA 58.490 39.130 0.00 0.00 36.95 4.55
3462 3723 6.346598 CGTTCGACATACAACTGAAGAAATGT 60.347 38.462 0.00 0.00 0.00 2.71
3535 3796 9.787532 TCAACATCTAAAAAGTCTTGAAAACAG 57.212 29.630 0.00 0.00 0.00 3.16
3714 3975 1.628846 TGGGAAAAGGCCAGTCTCTAC 59.371 52.381 5.01 0.00 0.00 2.59
3756 4017 0.182537 CCACACAACCAGGTCAGGAA 59.817 55.000 0.00 0.00 0.00 3.36
3781 4042 1.611410 GCACTGGACATGATGTGGTCA 60.611 52.381 1.23 0.00 42.06 4.02
3811 4072 5.470845 GGTTCATCTAAACCAACTGATCG 57.529 43.478 1.00 0.00 46.62 3.69
3857 4126 8.781196 CATAGTTCAAATGACATATTCCTCCTG 58.219 37.037 0.00 0.00 0.00 3.86
4388 4769 0.304705 GGCGGAACAGATTGTATGCG 59.695 55.000 0.00 0.00 0.00 4.73
4391 4772 1.754803 TCTCGGCGGAACAGATTGTAT 59.245 47.619 7.21 0.00 0.00 2.29
4634 5158 9.912634 TCCAAAACAACATATCTTGAAGAAATC 57.087 29.630 0.00 0.00 0.00 2.17
4639 5164 9.778993 CTATGTCCAAAACAACATATCTTGAAG 57.221 33.333 0.00 0.00 42.37 3.02
4703 5264 9.952030 TCAAACTTCCTATGTACAATCAACATA 57.048 29.630 0.00 0.00 38.49 2.29
4704 5265 8.862325 TCAAACTTCCTATGTACAATCAACAT 57.138 30.769 0.00 0.00 40.57 2.71
4759 5397 1.200020 GCTTTACTTGCGCTGGAACAT 59.800 47.619 9.73 0.00 38.20 2.71
4929 5568 2.551287 CCCGTGGTCATTTACTCCAACA 60.551 50.000 0.00 0.00 32.82 3.33
4930 5569 2.081462 CCCGTGGTCATTTACTCCAAC 58.919 52.381 0.00 0.00 32.82 3.77
4931 5570 1.700739 ACCCGTGGTCATTTACTCCAA 59.299 47.619 0.00 0.00 32.82 3.53
4932 5571 1.354101 ACCCGTGGTCATTTACTCCA 58.646 50.000 0.00 0.00 0.00 3.86
4933 5572 2.740904 GCTACCCGTGGTCATTTACTCC 60.741 54.545 0.00 0.00 37.09 3.85
4934 5573 2.547826 GCTACCCGTGGTCATTTACTC 58.452 52.381 0.00 0.00 37.09 2.59
4935 5574 1.208776 GGCTACCCGTGGTCATTTACT 59.791 52.381 0.00 0.00 37.09 2.24
4936 5575 1.208776 AGGCTACCCGTGGTCATTTAC 59.791 52.381 0.00 0.00 37.09 2.01
4937 5576 1.483415 GAGGCTACCCGTGGTCATTTA 59.517 52.381 0.00 0.00 37.09 1.40
4938 5577 0.252197 GAGGCTACCCGTGGTCATTT 59.748 55.000 0.00 0.00 37.09 2.32
4939 5578 0.907704 TGAGGCTACCCGTGGTCATT 60.908 55.000 0.00 0.00 37.09 2.57
4940 5579 0.691078 ATGAGGCTACCCGTGGTCAT 60.691 55.000 0.00 0.00 37.09 3.06
4941 5580 1.305802 ATGAGGCTACCCGTGGTCA 60.306 57.895 0.00 0.00 37.09 4.02
4942 5581 1.327690 TGATGAGGCTACCCGTGGTC 61.328 60.000 0.00 0.00 37.09 4.02
4943 5582 1.305802 TGATGAGGCTACCCGTGGT 60.306 57.895 0.00 1.14 40.16 4.16
4944 5583 1.443407 CTGATGAGGCTACCCGTGG 59.557 63.158 0.00 0.00 35.76 4.94
4945 5584 1.227380 GCTGATGAGGCTACCCGTG 60.227 63.158 0.00 0.00 35.76 4.94
4946 5585 2.435693 GGCTGATGAGGCTACCCGT 61.436 63.158 0.00 0.00 41.64 5.28
4947 5586 2.423446 GGCTGATGAGGCTACCCG 59.577 66.667 0.00 0.00 41.64 5.28
4948 5587 2.823758 GGGGCTGATGAGGCTACCC 61.824 68.421 5.58 0.00 44.36 3.69
4949 5588 2.823758 GGGGGCTGATGAGGCTACC 61.824 68.421 5.58 5.04 44.36 3.18
4950 5589 2.832498 GGGGGCTGATGAGGCTAC 59.168 66.667 5.58 0.00 44.36 3.58
4964 5603 3.380471 TGTCTTGAAATACCATGGGGG 57.620 47.619 18.09 0.00 44.81 5.40
4965 5604 3.565482 CGATGTCTTGAAATACCATGGGG 59.435 47.826 18.09 0.00 41.29 4.96
4966 5605 3.565482 CCGATGTCTTGAAATACCATGGG 59.435 47.826 18.09 0.00 0.00 4.00
4967 5606 3.565482 CCCGATGTCTTGAAATACCATGG 59.435 47.826 11.19 11.19 0.00 3.66
4968 5607 3.565482 CCCCGATGTCTTGAAATACCATG 59.435 47.826 0.00 0.00 0.00 3.66
4969 5608 3.820557 CCCCGATGTCTTGAAATACCAT 58.179 45.455 0.00 0.00 0.00 3.55
4970 5609 2.682563 GCCCCGATGTCTTGAAATACCA 60.683 50.000 0.00 0.00 0.00 3.25
4971 5610 1.947456 GCCCCGATGTCTTGAAATACC 59.053 52.381 0.00 0.00 0.00 2.73
4972 5611 1.947456 GGCCCCGATGTCTTGAAATAC 59.053 52.381 0.00 0.00 0.00 1.89
4973 5612 1.474320 CGGCCCCGATGTCTTGAAATA 60.474 52.381 0.00 0.00 42.83 1.40
4974 5613 0.748005 CGGCCCCGATGTCTTGAAAT 60.748 55.000 0.00 0.00 42.83 2.17
4975 5614 1.376683 CGGCCCCGATGTCTTGAAA 60.377 57.895 0.00 0.00 42.83 2.69
4976 5615 2.267642 CGGCCCCGATGTCTTGAA 59.732 61.111 0.00 0.00 42.83 2.69
4977 5616 3.781307 CCGGCCCCGATGTCTTGA 61.781 66.667 8.54 0.00 42.83 3.02
4999 5638 1.578206 GACTTTGACGCTTGAGGGGC 61.578 60.000 0.05 0.00 36.41 5.80
5000 5639 0.250295 TGACTTTGACGCTTGAGGGG 60.250 55.000 0.05 0.00 0.00 4.79
5001 5640 1.593196 TTGACTTTGACGCTTGAGGG 58.407 50.000 0.00 0.00 0.00 4.30
5002 5641 2.031682 CCTTTGACTTTGACGCTTGAGG 60.032 50.000 0.00 0.00 0.00 3.86
5003 5642 2.872245 TCCTTTGACTTTGACGCTTGAG 59.128 45.455 0.00 0.00 0.00 3.02
5004 5643 2.612212 GTCCTTTGACTTTGACGCTTGA 59.388 45.455 0.00 0.00 38.53 3.02
5005 5644 2.287009 GGTCCTTTGACTTTGACGCTTG 60.287 50.000 0.00 0.00 41.47 4.01
5006 5645 1.947456 GGTCCTTTGACTTTGACGCTT 59.053 47.619 0.00 0.00 41.47 4.68
5007 5646 1.594331 GGTCCTTTGACTTTGACGCT 58.406 50.000 0.00 0.00 41.47 5.07
5008 5647 0.234884 CGGTCCTTTGACTTTGACGC 59.765 55.000 0.00 0.00 41.47 5.19
5009 5648 0.234884 GCGGTCCTTTGACTTTGACG 59.765 55.000 0.00 0.00 41.47 4.35
5010 5649 0.591659 GGCGGTCCTTTGACTTTGAC 59.408 55.000 0.00 0.00 41.47 3.18
5011 5650 0.472471 AGGCGGTCCTTTGACTTTGA 59.528 50.000 0.00 0.00 40.66 2.69
5012 5651 3.021451 AGGCGGTCCTTTGACTTTG 57.979 52.632 0.00 0.00 40.66 2.77
5051 5690 4.770874 TTCTAGCAACCGGCCGCC 62.771 66.667 22.85 7.47 46.50 6.13
5052 5691 2.744709 TTTCTAGCAACCGGCCGC 60.745 61.111 22.85 5.79 46.50 6.53
5053 5692 2.750888 GCTTTCTAGCAACCGGCCG 61.751 63.158 21.04 21.04 46.95 6.13
5054 5693 3.188011 GCTTTCTAGCAACCGGCC 58.812 61.111 0.00 0.00 46.95 6.13
5062 5701 1.499688 GGATTCCGCCGCTTTCTAGC 61.500 60.000 0.00 0.00 44.21 3.42
5063 5702 0.179084 TGGATTCCGCCGCTTTCTAG 60.179 55.000 0.00 0.00 0.00 2.43
5064 5703 0.179084 CTGGATTCCGCCGCTTTCTA 60.179 55.000 0.00 0.00 0.00 2.10
5065 5704 1.450312 CTGGATTCCGCCGCTTTCT 60.450 57.895 0.00 0.00 0.00 2.52
5066 5705 1.024579 TTCTGGATTCCGCCGCTTTC 61.025 55.000 0.00 0.00 0.00 2.62
5067 5706 1.002624 TTCTGGATTCCGCCGCTTT 60.003 52.632 0.00 0.00 0.00 3.51
5068 5707 1.450312 CTTCTGGATTCCGCCGCTT 60.450 57.895 0.00 0.00 0.00 4.68
5069 5708 2.187946 CTTCTGGATTCCGCCGCT 59.812 61.111 0.00 0.00 0.00 5.52
5070 5709 2.897350 CCTTCTGGATTCCGCCGC 60.897 66.667 0.00 0.00 34.57 6.53
5071 5710 2.897350 GCCTTCTGGATTCCGCCG 60.897 66.667 0.00 0.00 34.57 6.46
5072 5711 1.821332 CTGCCTTCTGGATTCCGCC 60.821 63.158 0.00 0.00 34.57 6.13
5073 5712 2.476320 GCTGCCTTCTGGATTCCGC 61.476 63.158 0.00 0.00 34.57 5.54
5074 5713 1.821332 GGCTGCCTTCTGGATTCCG 60.821 63.158 12.43 0.00 34.57 4.30
5075 5714 0.465278 GAGGCTGCCTTCTGGATTCC 60.465 60.000 24.26 2.24 31.76 3.01
5076 5715 0.813210 CGAGGCTGCCTTCTGGATTC 60.813 60.000 24.26 6.43 31.76 2.52
5077 5716 1.222936 CGAGGCTGCCTTCTGGATT 59.777 57.895 24.26 0.00 31.76 3.01
5078 5717 1.684386 CTCGAGGCTGCCTTCTGGAT 61.684 60.000 24.26 0.00 31.76 3.41
5079 5718 2.283894 TCGAGGCTGCCTTCTGGA 60.284 61.111 24.26 14.69 31.76 3.86
5080 5719 2.186384 CTCGAGGCTGCCTTCTGG 59.814 66.667 24.26 12.59 31.76 3.86
5081 5720 2.186384 CCTCGAGGCTGCCTTCTG 59.814 66.667 24.26 15.67 31.76 3.02
5082 5721 2.284258 ACCTCGAGGCTGCCTTCT 60.284 61.111 31.56 6.22 39.32 2.85
5083 5722 2.125350 CACCTCGAGGCTGCCTTC 60.125 66.667 31.56 14.57 39.32 3.46
5084 5723 3.710722 CCACCTCGAGGCTGCCTT 61.711 66.667 31.56 7.90 39.32 4.35
5092 5731 3.827898 GAGTCGGCCCACCTCGAG 61.828 72.222 5.13 5.13 36.00 4.04
5095 5734 2.043248 TAGGAGTCGGCCCACCTC 60.043 66.667 0.00 0.00 34.42 3.85
5096 5735 2.042843 CTAGGAGTCGGCCCACCT 60.043 66.667 0.00 0.00 36.65 4.00
5097 5736 3.851128 GCTAGGAGTCGGCCCACC 61.851 72.222 0.00 0.00 0.00 4.61
5098 5737 3.075005 TGCTAGGAGTCGGCCCAC 61.075 66.667 0.00 0.00 0.00 4.61
5099 5738 2.759973 CTGCTAGGAGTCGGCCCA 60.760 66.667 2.51 0.00 0.00 5.36
5100 5739 3.541713 CCTGCTAGGAGTCGGCCC 61.542 72.222 10.65 0.00 37.67 5.80
5101 5740 4.228567 GCCTGCTAGGAGTCGGCC 62.229 72.222 10.65 0.00 37.67 6.13
5102 5741 4.577246 CGCCTGCTAGGAGTCGGC 62.577 72.222 6.81 4.87 37.67 5.54
5103 5742 3.905678 CCGCCTGCTAGGAGTCGG 61.906 72.222 19.31 19.31 37.67 4.79
5104 5743 4.577246 GCCGCCTGCTAGGAGTCG 62.577 72.222 7.79 7.79 37.67 4.18
5105 5744 4.228567 GGCCGCCTGCTAGGAGTC 62.229 72.222 10.65 0.00 37.67 3.36
5106 5745 4.787280 AGGCCGCCTGCTAGGAGT 62.787 66.667 12.38 0.00 37.67 3.85
5107 5746 3.922640 GAGGCCGCCTGCTAGGAG 61.923 72.222 19.21 3.88 37.67 3.69
5110 5749 4.232878 CTGGAGGCCGCCTGCTAG 62.233 72.222 28.83 20.30 42.66 3.42
5111 5750 4.777854 TCTGGAGGCCGCCTGCTA 62.778 66.667 28.83 15.95 42.66 3.49
5114 5753 3.847602 CTCTCTGGAGGCCGCCTG 61.848 72.222 27.03 25.39 36.03 4.85
5122 5761 3.535962 GAGCCGGCCTCTCTGGAG 61.536 72.222 26.15 0.00 44.37 3.86
5124 5763 3.740495 TAGGAGCCGGCCTCTCTGG 62.740 68.421 26.15 5.65 44.43 3.86
5125 5764 2.123683 TAGGAGCCGGCCTCTCTG 60.124 66.667 26.15 0.00 40.57 3.35
5126 5765 2.197324 CTAGGAGCCGGCCTCTCT 59.803 66.667 26.15 17.52 40.57 3.10
5127 5766 3.611674 GCTAGGAGCCGGCCTCTC 61.612 72.222 26.15 14.93 40.57 3.20
5128 5767 4.465446 TGCTAGGAGCCGGCCTCT 62.465 66.667 26.15 22.82 41.51 3.69
5129 5768 3.922640 CTGCTAGGAGCCGGCCTC 61.923 72.222 26.15 19.50 41.51 4.70
5152 5791 2.422945 GCTAACTTCAAGGGTATGGGGG 60.423 54.545 0.00 0.00 0.00 5.40
5153 5792 2.745152 CGCTAACTTCAAGGGTATGGGG 60.745 54.545 0.00 0.00 0.00 4.96
5154 5793 2.561569 CGCTAACTTCAAGGGTATGGG 58.438 52.381 0.00 0.00 0.00 4.00
5155 5794 1.940613 GCGCTAACTTCAAGGGTATGG 59.059 52.381 0.00 0.00 0.00 2.74
5156 5795 1.940613 GGCGCTAACTTCAAGGGTATG 59.059 52.381 7.64 0.00 0.00 2.39
5157 5796 1.134189 GGGCGCTAACTTCAAGGGTAT 60.134 52.381 7.64 0.00 0.00 2.73
5158 5797 0.251073 GGGCGCTAACTTCAAGGGTA 59.749 55.000 7.64 0.00 0.00 3.69
5159 5798 1.002502 GGGCGCTAACTTCAAGGGT 60.003 57.895 7.64 0.00 0.00 4.34
5160 5799 1.749258 GGGGCGCTAACTTCAAGGG 60.749 63.158 7.64 0.00 0.00 3.95
5161 5800 0.394352 ATGGGGCGCTAACTTCAAGG 60.394 55.000 7.64 0.00 0.00 3.61
5162 5801 1.463674 AATGGGGCGCTAACTTCAAG 58.536 50.000 7.64 0.00 0.00 3.02
5163 5802 2.361789 GTAATGGGGCGCTAACTTCAA 58.638 47.619 7.64 0.00 0.00 2.69
5164 5803 1.407712 GGTAATGGGGCGCTAACTTCA 60.408 52.381 7.64 0.00 0.00 3.02
5165 5804 1.306148 GGTAATGGGGCGCTAACTTC 58.694 55.000 7.64 0.00 0.00 3.01
5166 5805 0.621609 TGGTAATGGGGCGCTAACTT 59.378 50.000 7.64 0.00 0.00 2.66
5167 5806 0.843984 ATGGTAATGGGGCGCTAACT 59.156 50.000 7.64 0.00 0.00 2.24
5168 5807 0.951558 CATGGTAATGGGGCGCTAAC 59.048 55.000 7.64 0.00 0.00 2.34
5169 5808 0.840617 TCATGGTAATGGGGCGCTAA 59.159 50.000 7.64 0.00 34.30 3.09
5170 5809 0.107831 GTCATGGTAATGGGGCGCTA 59.892 55.000 7.64 0.00 34.30 4.26
5171 5810 1.152963 GTCATGGTAATGGGGCGCT 60.153 57.895 7.64 0.00 34.30 5.92
5172 5811 1.447317 CTGTCATGGTAATGGGGCGC 61.447 60.000 0.00 0.00 34.30 6.53
5173 5812 0.819259 CCTGTCATGGTAATGGGGCG 60.819 60.000 0.00 0.00 34.30 6.13
5174 5813 0.550914 TCCTGTCATGGTAATGGGGC 59.449 55.000 0.00 0.00 34.30 5.80
5175 5814 1.475034 CGTCCTGTCATGGTAATGGGG 60.475 57.143 0.00 0.00 34.30 4.96
5176 5815 1.475034 CCGTCCTGTCATGGTAATGGG 60.475 57.143 0.00 0.00 34.30 4.00
5177 5816 1.475034 CCCGTCCTGTCATGGTAATGG 60.475 57.143 0.00 0.00 34.30 3.16
5178 5817 1.475034 CCCCGTCCTGTCATGGTAATG 60.475 57.143 0.00 0.00 34.88 1.90
5179 5818 0.837272 CCCCGTCCTGTCATGGTAAT 59.163 55.000 0.00 0.00 0.00 1.89
5180 5819 0.545787 ACCCCGTCCTGTCATGGTAA 60.546 55.000 0.00 0.00 0.00 2.85
5181 5820 0.974010 GACCCCGTCCTGTCATGGTA 60.974 60.000 0.00 0.00 0.00 3.25
5182 5821 2.203938 ACCCCGTCCTGTCATGGT 60.204 61.111 0.00 0.00 0.00 3.55
5183 5822 2.584608 GACCCCGTCCTGTCATGG 59.415 66.667 0.00 0.00 0.00 3.66
5184 5823 2.184322 CGACCCCGTCCTGTCATG 59.816 66.667 0.00 0.00 0.00 3.07
5185 5824 3.075005 CCGACCCCGTCCTGTCAT 61.075 66.667 0.00 0.00 0.00 3.06
5203 5842 4.736896 GTCGGACGTGGAGGTGGC 62.737 72.222 0.00 0.00 0.00 5.01
5204 5843 3.282745 CTGTCGGACGTGGAGGTGG 62.283 68.421 0.00 0.00 0.00 4.61
5205 5844 2.258591 CTGTCGGACGTGGAGGTG 59.741 66.667 0.00 0.00 0.00 4.00
5206 5845 3.681835 GCTGTCGGACGTGGAGGT 61.682 66.667 0.00 0.00 0.00 3.85
5207 5846 3.343788 GAGCTGTCGGACGTGGAGG 62.344 68.421 0.00 0.00 0.00 4.30
5208 5847 2.179517 GAGCTGTCGGACGTGGAG 59.820 66.667 0.00 0.00 0.00 3.86
5209 5848 3.371063 GGAGCTGTCGGACGTGGA 61.371 66.667 0.00 0.00 0.00 4.02
5210 5849 4.436998 GGGAGCTGTCGGACGTGG 62.437 72.222 0.00 0.00 0.00 4.94
5211 5850 3.006756 ATGGGAGCTGTCGGACGTG 62.007 63.158 0.00 0.26 0.00 4.49
5212 5851 2.680352 ATGGGAGCTGTCGGACGT 60.680 61.111 3.34 0.00 0.00 4.34
5213 5852 1.663379 TACATGGGAGCTGTCGGACG 61.663 60.000 3.34 0.00 0.00 4.79
5214 5853 0.179108 GTACATGGGAGCTGTCGGAC 60.179 60.000 0.00 0.00 0.00 4.79
5215 5854 0.613572 TGTACATGGGAGCTGTCGGA 60.614 55.000 0.00 0.00 0.00 4.55
5216 5855 0.460284 GTGTACATGGGAGCTGTCGG 60.460 60.000 0.00 0.00 0.00 4.79
5217 5856 0.246360 TGTGTACATGGGAGCTGTCG 59.754 55.000 0.00 0.00 0.00 4.35
5218 5857 2.555199 GATGTGTACATGGGAGCTGTC 58.445 52.381 0.00 0.00 36.57 3.51
5219 5858 1.210478 GGATGTGTACATGGGAGCTGT 59.790 52.381 0.00 0.00 36.57 4.40
5220 5859 1.807755 CGGATGTGTACATGGGAGCTG 60.808 57.143 0.00 0.00 36.57 4.24
5221 5860 0.465705 CGGATGTGTACATGGGAGCT 59.534 55.000 0.00 0.00 36.57 4.09
5222 5861 0.532862 CCGGATGTGTACATGGGAGC 60.533 60.000 0.00 0.00 36.57 4.70
5223 5862 0.532862 GCCGGATGTGTACATGGGAG 60.533 60.000 5.05 0.00 36.57 4.30
5224 5863 1.268283 TGCCGGATGTGTACATGGGA 61.268 55.000 5.05 4.32 36.57 4.37
5225 5864 1.095228 GTGCCGGATGTGTACATGGG 61.095 60.000 5.05 4.99 36.57 4.00
5226 5865 1.428370 CGTGCCGGATGTGTACATGG 61.428 60.000 5.05 0.00 36.57 3.66
5227 5866 2.005995 CGTGCCGGATGTGTACATG 58.994 57.895 5.05 0.00 36.57 3.21
5228 5867 4.513519 CGTGCCGGATGTGTACAT 57.486 55.556 5.05 0.00 39.70 2.29
5259 5898 1.069432 CACATCATTAGCCGCATGAGC 60.069 52.381 0.00 0.00 34.12 4.26
5260 5899 1.534163 CCACATCATTAGCCGCATGAG 59.466 52.381 0.00 0.00 34.12 2.90
5261 5900 1.596603 CCACATCATTAGCCGCATGA 58.403 50.000 0.00 0.00 35.12 3.07
5262 5901 0.594602 CCCACATCATTAGCCGCATG 59.405 55.000 0.00 0.00 0.00 4.06
5263 5902 0.538057 CCCCACATCATTAGCCGCAT 60.538 55.000 0.00 0.00 0.00 4.73
5264 5903 1.152984 CCCCACATCATTAGCCGCA 60.153 57.895 0.00 0.00 0.00 5.69
5265 5904 2.555547 GCCCCACATCATTAGCCGC 61.556 63.158 0.00 0.00 0.00 6.53
5266 5905 1.898574 GGCCCCACATCATTAGCCG 60.899 63.158 0.00 0.00 0.00 5.52
5267 5906 1.898574 CGGCCCCACATCATTAGCC 60.899 63.158 0.00 0.00 37.03 3.93
5268 5907 1.898574 CCGGCCCCACATCATTAGC 60.899 63.158 0.00 0.00 0.00 3.09
5269 5908 1.228245 CCCGGCCCCACATCATTAG 60.228 63.158 0.00 0.00 0.00 1.73
5270 5909 2.923035 CCCGGCCCCACATCATTA 59.077 61.111 0.00 0.00 0.00 1.90
5271 5910 4.839706 GCCCGGCCCCACATCATT 62.840 66.667 0.00 0.00 0.00 2.57
5283 5922 4.115199 CTTCCCCTCCAAGCCCGG 62.115 72.222 0.00 0.00 0.00 5.73
5284 5923 4.803908 GCTTCCCCTCCAAGCCCG 62.804 72.222 0.00 0.00 40.45 6.13
5285 5924 3.661648 TGCTTCCCCTCCAAGCCC 61.662 66.667 2.11 0.00 44.90 5.19
5286 5925 2.361737 GTGCTTCCCCTCCAAGCC 60.362 66.667 2.11 0.00 44.90 4.35
5287 5926 1.377856 GAGTGCTTCCCCTCCAAGC 60.378 63.158 0.00 0.00 45.59 4.01
5288 5927 1.078848 CGAGTGCTTCCCCTCCAAG 60.079 63.158 0.00 0.00 0.00 3.61
5289 5928 2.592993 CCGAGTGCTTCCCCTCCAA 61.593 63.158 0.00 0.00 0.00 3.53
5290 5929 3.003173 CCGAGTGCTTCCCCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
5291 5930 4.475135 GCCGAGTGCTTCCCCTCC 62.475 72.222 0.00 0.00 36.87 4.30
5292 5931 4.821589 CGCCGAGTGCTTCCCCTC 62.822 72.222 0.00 0.00 38.05 4.30
5302 5941 4.873129 CTATGTGGCGCGCCGAGT 62.873 66.667 41.73 30.93 39.42 4.18
5312 5951 1.822613 CTGCTGGCTGCCTATGTGG 60.823 63.158 21.03 4.37 42.00 4.17
5313 5952 1.822613 CCTGCTGGCTGCCTATGTG 60.823 63.158 21.03 6.29 42.00 3.21
5314 5953 2.262774 GACCTGCTGGCTGCCTATGT 62.263 60.000 21.03 9.68 42.00 2.29
5315 5954 1.525535 GACCTGCTGGCTGCCTATG 60.526 63.158 21.03 11.01 42.00 2.23
5316 5955 2.750657 GGACCTGCTGGCTGCCTAT 61.751 63.158 21.03 0.00 42.00 2.57
5317 5956 3.402681 GGACCTGCTGGCTGCCTA 61.403 66.667 21.03 5.44 42.00 3.93
5325 5964 3.710722 AAGGGCTCGGACCTGCTG 61.711 66.667 0.00 0.00 42.44 4.41
5326 5965 3.710722 CAAGGGCTCGGACCTGCT 61.711 66.667 0.00 0.00 42.44 4.24
5327 5966 3.672295 CTCAAGGGCTCGGACCTGC 62.672 68.421 0.00 0.00 42.44 4.85
5328 5967 2.581354 CTCAAGGGCTCGGACCTG 59.419 66.667 0.00 0.00 42.44 4.00
5338 5977 1.695597 AGATGGAGGGCCTCAAGGG 60.696 63.158 33.27 0.00 35.18 3.95
5339 5978 1.704007 GGAGATGGAGGGCCTCAAGG 61.704 65.000 33.27 0.00 38.53 3.61
5340 5979 1.835693 GGAGATGGAGGGCCTCAAG 59.164 63.158 33.27 0.00 34.31 3.02
5341 5980 2.066393 CGGAGATGGAGGGCCTCAA 61.066 63.158 33.27 25.11 34.31 3.02
5342 5981 2.444706 CGGAGATGGAGGGCCTCA 60.445 66.667 33.27 20.14 34.31 3.86
5343 5982 2.444895 ACGGAGATGGAGGGCCTC 60.445 66.667 25.80 25.80 34.31 4.70
5344 5983 2.444895 GACGGAGATGGAGGGCCT 60.445 66.667 5.25 5.25 34.31 5.19
5345 5984 2.105806 GATGACGGAGATGGAGGGCC 62.106 65.000 0.00 0.00 0.00 5.80
5346 5985 1.369321 GATGACGGAGATGGAGGGC 59.631 63.158 0.00 0.00 0.00 5.19
5347 5986 0.390860 GTGATGACGGAGATGGAGGG 59.609 60.000 0.00 0.00 0.00 4.30
5348 5987 0.390860 GGTGATGACGGAGATGGAGG 59.609 60.000 0.00 0.00 0.00 4.30
5349 5988 1.068281 CAGGTGATGACGGAGATGGAG 59.932 57.143 0.00 0.00 0.00 3.86
5350 5989 1.114627 CAGGTGATGACGGAGATGGA 58.885 55.000 0.00 0.00 0.00 3.41
5351 5990 1.114627 TCAGGTGATGACGGAGATGG 58.885 55.000 0.00 0.00 31.12 3.51
5352 5991 2.167281 ACTTCAGGTGATGACGGAGATG 59.833 50.000 0.18 0.00 37.77 2.90
5353 5992 2.428890 GACTTCAGGTGATGACGGAGAT 59.571 50.000 0.18 0.00 37.77 2.75
5354 5993 1.819288 GACTTCAGGTGATGACGGAGA 59.181 52.381 0.18 0.00 37.77 3.71
5355 5994 1.468224 CGACTTCAGGTGATGACGGAG 60.468 57.143 8.96 0.00 37.77 4.63
5356 5995 0.526211 CGACTTCAGGTGATGACGGA 59.474 55.000 8.96 0.00 37.77 4.69
5357 5996 0.458543 CCGACTTCAGGTGATGACGG 60.459 60.000 17.47 17.47 44.97 4.79
5358 5997 0.458543 CCCGACTTCAGGTGATGACG 60.459 60.000 9.61 9.61 37.77 4.35
5359 5998 0.741221 GCCCGACTTCAGGTGATGAC 60.741 60.000 0.18 0.00 37.77 3.06
5360 5999 1.596934 GCCCGACTTCAGGTGATGA 59.403 57.895 0.18 0.00 35.62 2.92
5361 6000 1.811266 CGCCCGACTTCAGGTGATG 60.811 63.158 0.00 0.00 35.58 3.07
5362 6001 1.949847 CTCGCCCGACTTCAGGTGAT 61.950 60.000 0.00 0.00 41.65 3.06
5363 6002 2.599281 TCGCCCGACTTCAGGTGA 60.599 61.111 0.00 0.00 40.32 4.02
5364 6003 2.125912 CTCGCCCGACTTCAGGTG 60.126 66.667 0.00 0.00 34.85 4.00
5365 6004 3.382832 CCTCGCCCGACTTCAGGT 61.383 66.667 0.00 0.00 0.00 4.00
5366 6005 4.148825 CCCTCGCCCGACTTCAGG 62.149 72.222 0.00 0.00 0.00 3.86
5367 6006 4.821589 GCCCTCGCCCGACTTCAG 62.822 72.222 0.00 0.00 0.00 3.02
5400 6039 4.286320 AAGCCGAGCGCCCTATCG 62.286 66.667 2.29 6.82 38.78 2.92
5401 6040 2.083835 TACAAGCCGAGCGCCCTATC 62.084 60.000 2.29 0.00 38.78 2.08
5402 6041 2.131709 TACAAGCCGAGCGCCCTAT 61.132 57.895 2.29 0.00 38.78 2.57
5403 6042 2.756691 TACAAGCCGAGCGCCCTA 60.757 61.111 2.29 0.00 38.78 3.53
5404 6043 4.452733 GTACAAGCCGAGCGCCCT 62.453 66.667 2.29 0.00 38.78 5.19
5405 6044 4.452733 AGTACAAGCCGAGCGCCC 62.453 66.667 2.29 0.00 38.78 6.13
5406 6045 3.188786 CAGTACAAGCCGAGCGCC 61.189 66.667 2.29 0.00 38.78 6.53
5407 6046 3.854459 GCAGTACAAGCCGAGCGC 61.854 66.667 0.00 0.00 37.98 5.92
5408 6047 3.188786 GGCAGTACAAGCCGAGCG 61.189 66.667 12.77 0.00 43.15 5.03
5414 6053 0.721718 CGCTAACTGGCAGTACAAGC 59.278 55.000 26.97 26.97 0.00 4.01
5415 6054 0.721718 GCGCTAACTGGCAGTACAAG 59.278 55.000 22.37 18.56 0.00 3.16
5416 6055 1.011968 CGCGCTAACTGGCAGTACAA 61.012 55.000 22.37 8.77 0.00 2.41
5417 6056 1.445410 CGCGCTAACTGGCAGTACA 60.445 57.895 22.37 11.06 0.00 2.90
5418 6057 2.799540 GCGCGCTAACTGGCAGTAC 61.800 63.158 26.67 12.54 0.00 2.73
5419 6058 2.508439 GCGCGCTAACTGGCAGTA 60.508 61.111 26.67 8.49 0.00 2.74
5445 6084 4.802051 TACGTAGTCGGCCCGCCT 62.802 66.667 0.00 0.00 43.93 5.52
5446 6085 3.763127 CTTACGTAGTCGGCCCGCC 62.763 68.421 0.00 0.00 43.93 6.13
5447 6086 2.278401 CTTACGTAGTCGGCCCGC 60.278 66.667 0.00 0.00 43.93 6.13
5448 6087 2.278401 GCTTACGTAGTCGGCCCG 60.278 66.667 0.00 0.00 43.93 6.13
5449 6088 2.105729 GGCTTACGTAGTCGGCCC 59.894 66.667 15.34 0.00 46.97 5.80
5454 6093 0.108945 ACTTGCCGGCTTACGTAGTC 60.109 55.000 29.70 0.00 43.93 2.59
5456 6095 0.719465 CAACTTGCCGGCTTACGTAG 59.281 55.000 29.70 16.27 42.24 3.51
5457 6096 0.317799 TCAACTTGCCGGCTTACGTA 59.682 50.000 29.70 1.94 42.24 3.57
5458 6097 0.321298 ATCAACTTGCCGGCTTACGT 60.321 50.000 29.70 15.78 42.24 3.57
5459 6098 0.096976 CATCAACTTGCCGGCTTACG 59.903 55.000 29.70 15.10 43.80 3.18
5460 6099 1.165270 ACATCAACTTGCCGGCTTAC 58.835 50.000 29.70 0.00 0.00 2.34
5461 6100 2.027561 ACTACATCAACTTGCCGGCTTA 60.028 45.455 29.70 14.91 0.00 3.09
5462 6101 1.271379 ACTACATCAACTTGCCGGCTT 60.271 47.619 29.70 11.32 0.00 4.35
5463 6102 0.324943 ACTACATCAACTTGCCGGCT 59.675 50.000 29.70 3.84 0.00 5.52
5464 6103 0.727398 GACTACATCAACTTGCCGGC 59.273 55.000 22.73 22.73 0.00 6.13
5465 6104 1.338674 TGGACTACATCAACTTGCCGG 60.339 52.381 0.00 0.00 0.00 6.13
5466 6105 2.093306 TGGACTACATCAACTTGCCG 57.907 50.000 0.00 0.00 0.00 5.69
5467 6106 2.159627 CGTTGGACTACATCAACTTGCC 59.840 50.000 0.00 0.00 40.56 4.52
5468 6107 2.806244 ACGTTGGACTACATCAACTTGC 59.194 45.455 0.00 0.00 40.56 4.01
5469 6108 3.121279 CGACGTTGGACTACATCAACTTG 59.879 47.826 0.00 0.00 40.56 3.16
5470 6109 3.005050 TCGACGTTGGACTACATCAACTT 59.995 43.478 2.20 0.00 40.56 2.66
5471 6110 2.555325 TCGACGTTGGACTACATCAACT 59.445 45.455 2.20 0.00 40.56 3.16
5472 6111 2.937591 TCGACGTTGGACTACATCAAC 58.062 47.619 2.20 0.00 39.66 3.18
5473 6112 3.646611 TTCGACGTTGGACTACATCAA 57.353 42.857 2.20 0.00 0.00 2.57
5474 6113 3.191791 TCATTCGACGTTGGACTACATCA 59.808 43.478 2.20 0.00 0.00 3.07
5475 6114 3.766151 TCATTCGACGTTGGACTACATC 58.234 45.455 2.20 0.00 0.00 3.06
5476 6115 3.861276 TCATTCGACGTTGGACTACAT 57.139 42.857 2.20 0.00 0.00 2.29
5477 6116 3.571571 CTTCATTCGACGTTGGACTACA 58.428 45.455 2.20 0.00 0.00 2.74
5478 6117 2.921754 CCTTCATTCGACGTTGGACTAC 59.078 50.000 2.20 0.00 0.00 2.73
5479 6118 2.559668 ACCTTCATTCGACGTTGGACTA 59.440 45.455 2.20 0.00 0.00 2.59
5480 6119 1.343465 ACCTTCATTCGACGTTGGACT 59.657 47.619 2.20 0.00 0.00 3.85
5481 6120 1.792006 ACCTTCATTCGACGTTGGAC 58.208 50.000 2.20 0.00 0.00 4.02
5482 6121 2.036733 AGAACCTTCATTCGACGTTGGA 59.963 45.455 2.20 0.00 33.57 3.53
5483 6122 2.413837 AGAACCTTCATTCGACGTTGG 58.586 47.619 2.20 0.00 33.57 3.77
5484 6123 5.585500 TTAAGAACCTTCATTCGACGTTG 57.415 39.130 0.00 0.00 33.57 4.10
5485 6124 5.699458 ACATTAAGAACCTTCATTCGACGTT 59.301 36.000 0.00 0.00 33.57 3.99
5486 6125 5.235516 ACATTAAGAACCTTCATTCGACGT 58.764 37.500 0.00 0.00 33.57 4.34
5487 6126 5.779806 ACATTAAGAACCTTCATTCGACG 57.220 39.130 0.00 0.00 33.57 5.12
5488 6127 9.543018 CTTTTACATTAAGAACCTTCATTCGAC 57.457 33.333 0.00 0.00 33.57 4.20
5489 6128 9.280174 ACTTTTACATTAAGAACCTTCATTCGA 57.720 29.630 0.00 0.00 33.57 3.71
5494 6133 9.498176 GTCCTACTTTTACATTAAGAACCTTCA 57.502 33.333 0.00 0.00 0.00 3.02
5495 6134 9.722184 AGTCCTACTTTTACATTAAGAACCTTC 57.278 33.333 0.00 0.00 0.00 3.46
5497 6136 9.722184 GAAGTCCTACTTTTACATTAAGAACCT 57.278 33.333 0.00 0.00 38.80 3.50
5498 6137 9.722184 AGAAGTCCTACTTTTACATTAAGAACC 57.278 33.333 0.00 0.00 38.80 3.62
5500 6139 9.216117 GCAGAAGTCCTACTTTTACATTAAGAA 57.784 33.333 0.00 0.00 38.80 2.52
5501 6140 7.822822 GGCAGAAGTCCTACTTTTACATTAAGA 59.177 37.037 0.00 0.00 38.80 2.10
5502 6141 7.606456 TGGCAGAAGTCCTACTTTTACATTAAG 59.394 37.037 0.00 0.00 38.80 1.85
5503 6142 7.389607 GTGGCAGAAGTCCTACTTTTACATTAA 59.610 37.037 0.00 0.00 38.80 1.40
5504 6143 6.877322 GTGGCAGAAGTCCTACTTTTACATTA 59.123 38.462 0.00 0.00 38.80 1.90
5505 6144 5.705905 GTGGCAGAAGTCCTACTTTTACATT 59.294 40.000 0.00 0.00 38.80 2.71
5506 6145 5.221843 TGTGGCAGAAGTCCTACTTTTACAT 60.222 40.000 0.00 0.00 38.80 2.29
5507 6146 4.101898 TGTGGCAGAAGTCCTACTTTTACA 59.898 41.667 0.00 0.00 38.80 2.41
5508 6147 4.638304 TGTGGCAGAAGTCCTACTTTTAC 58.362 43.478 0.00 0.00 38.80 2.01
5509 6148 4.347000 ACTGTGGCAGAAGTCCTACTTTTA 59.653 41.667 2.91 0.00 38.80 1.52
5510 6149 3.136626 ACTGTGGCAGAAGTCCTACTTTT 59.863 43.478 2.91 0.00 38.80 2.27
5511 6150 2.706190 ACTGTGGCAGAAGTCCTACTTT 59.294 45.455 2.91 0.00 38.80 2.66
5512 6151 2.330216 ACTGTGGCAGAAGTCCTACTT 58.670 47.619 2.91 0.00 41.95 2.24
5513 6152 2.016905 ACTGTGGCAGAAGTCCTACT 57.983 50.000 2.91 0.00 35.18 2.57
5514 6153 2.808543 CAAACTGTGGCAGAAGTCCTAC 59.191 50.000 2.91 0.00 35.18 3.18
5515 6154 2.224523 CCAAACTGTGGCAGAAGTCCTA 60.225 50.000 2.91 0.00 41.72 2.94
5516 6155 1.477558 CCAAACTGTGGCAGAAGTCCT 60.478 52.381 2.91 0.00 41.72 3.85
5517 6156 0.954452 CCAAACTGTGGCAGAAGTCC 59.046 55.000 2.91 0.00 41.72 3.85
5527 6166 0.387622 CTGCAATCGGCCAAACTGTG 60.388 55.000 2.24 0.00 43.89 3.66
5528 6167 1.959085 CTGCAATCGGCCAAACTGT 59.041 52.632 2.24 0.00 43.89 3.55
5529 6168 1.444895 GCTGCAATCGGCCAAACTG 60.445 57.895 2.24 0.00 43.89 3.16
5530 6169 1.870055 CTGCTGCAATCGGCCAAACT 61.870 55.000 2.24 0.00 43.94 2.66
5531 6170 1.444895 CTGCTGCAATCGGCCAAAC 60.445 57.895 2.24 0.00 43.94 2.93
5532 6171 2.638354 CCTGCTGCAATCGGCCAAA 61.638 57.895 2.24 0.00 43.94 3.28
5533 6172 3.063704 CCTGCTGCAATCGGCCAA 61.064 61.111 2.24 0.00 43.94 4.52
5535 6174 4.802051 TCCCTGCTGCAATCGGCC 62.802 66.667 3.02 0.00 43.94 6.13
5536 6175 3.207669 CTCCCTGCTGCAATCGGC 61.208 66.667 3.02 0.00 44.80 5.54
5537 6176 1.817099 GTCTCCCTGCTGCAATCGG 60.817 63.158 3.02 1.13 0.00 4.18
5538 6177 1.078918 TGTCTCCCTGCTGCAATCG 60.079 57.895 3.02 0.00 0.00 3.34
5539 6178 0.251354 TCTGTCTCCCTGCTGCAATC 59.749 55.000 3.02 0.00 0.00 2.67
5540 6179 0.035630 GTCTGTCTCCCTGCTGCAAT 60.036 55.000 3.02 0.00 0.00 3.56
5541 6180 1.372683 GTCTGTCTCCCTGCTGCAA 59.627 57.895 3.02 0.00 0.00 4.08
5542 6181 2.935740 CGTCTGTCTCCCTGCTGCA 61.936 63.158 0.88 0.88 0.00 4.41
5543 6182 2.125753 CGTCTGTCTCCCTGCTGC 60.126 66.667 0.00 0.00 0.00 5.25
5544 6183 2.575993 CCGTCTGTCTCCCTGCTG 59.424 66.667 0.00 0.00 0.00 4.41
5545 6184 2.681778 CCCGTCTGTCTCCCTGCT 60.682 66.667 0.00 0.00 0.00 4.24
5546 6185 2.232298 CTTCCCGTCTGTCTCCCTGC 62.232 65.000 0.00 0.00 0.00 4.85
5547 6186 1.893786 CTTCCCGTCTGTCTCCCTG 59.106 63.158 0.00 0.00 0.00 4.45
5548 6187 1.985116 GCTTCCCGTCTGTCTCCCT 60.985 63.158 0.00 0.00 0.00 4.20
5549 6188 2.579738 GCTTCCCGTCTGTCTCCC 59.420 66.667 0.00 0.00 0.00 4.30
5550 6189 2.182030 CGCTTCCCGTCTGTCTCC 59.818 66.667 0.00 0.00 0.00 3.71
5551 6190 2.156051 AACCGCTTCCCGTCTGTCTC 62.156 60.000 0.00 0.00 34.38 3.36
5552 6191 2.156051 GAACCGCTTCCCGTCTGTCT 62.156 60.000 0.00 0.00 34.38 3.41
5553 6192 1.737008 GAACCGCTTCCCGTCTGTC 60.737 63.158 0.00 0.00 34.38 3.51
5554 6193 2.342648 GAACCGCTTCCCGTCTGT 59.657 61.111 0.00 0.00 34.38 3.41
5555 6194 2.434359 GGAACCGCTTCCCGTCTG 60.434 66.667 0.00 0.00 40.38 3.51
5632 6271 3.741476 CCTCAAGCTTGGCACCGC 61.741 66.667 25.73 0.00 0.00 5.68
5633 6272 1.003839 TACCTCAAGCTTGGCACCG 60.004 57.895 25.73 11.22 0.00 4.94
5634 6273 0.324943 TCTACCTCAAGCTTGGCACC 59.675 55.000 25.73 0.00 0.00 5.01
5635 6274 2.079925 CTTCTACCTCAAGCTTGGCAC 58.920 52.381 25.73 0.00 0.00 5.01
5636 6275 1.611673 GCTTCTACCTCAAGCTTGGCA 60.612 52.381 25.73 7.15 42.63 4.92
5637 6276 1.090728 GCTTCTACCTCAAGCTTGGC 58.909 55.000 25.73 14.55 42.63 4.52
5638 6277 2.079925 GTGCTTCTACCTCAAGCTTGG 58.920 52.381 25.73 13.76 45.59 3.61
5639 6278 2.999355 GAGTGCTTCTACCTCAAGCTTG 59.001 50.000 20.81 20.81 45.59 4.01
5640 6279 2.903135 AGAGTGCTTCTACCTCAAGCTT 59.097 45.455 0.00 0.00 45.59 3.74
5641 6280 2.495669 GAGAGTGCTTCTACCTCAAGCT 59.504 50.000 6.03 0.00 45.59 3.74
5642 6281 2.418060 GGAGAGTGCTTCTACCTCAAGC 60.418 54.545 0.00 0.00 45.59 4.01
5643 6282 3.518634 GGAGAGTGCTTCTACCTCAAG 57.481 52.381 0.00 0.00 35.87 3.02
5649 6288 1.754226 CTCTGGGGAGAGTGCTTCTAC 59.246 57.143 0.00 0.00 41.86 2.59
5650 6289 1.641192 TCTCTGGGGAGAGTGCTTCTA 59.359 52.381 0.00 0.00 42.95 2.10
5651 6290 0.411452 TCTCTGGGGAGAGTGCTTCT 59.589 55.000 0.00 0.00 42.95 2.85
5652 6291 2.983512 TCTCTGGGGAGAGTGCTTC 58.016 57.895 0.00 0.00 42.95 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.