Multiple sequence alignment - TraesCS6D01G082700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G082700 chr6D 100.000 2447 0 0 1 2447 47812000 47809554 0.000000e+00 4519.0
1 TraesCS6D01G082700 chr6D 89.425 435 35 6 1076 1502 49848982 49849413 2.770000e-149 538.0
2 TraesCS6D01G082700 chr6D 89.070 430 31 7 1076 1502 49855359 49855775 1.000000e-143 520.0
3 TraesCS6D01G082700 chr6D 89.011 364 32 4 1091 1451 49843089 49843447 6.210000e-121 444.0
4 TraesCS6D01G082700 chr6D 82.143 336 48 8 776 1106 49842380 49842708 6.660000e-71 278.0
5 TraesCS6D01G082700 chr6D 85.135 148 14 5 93 234 49848365 49848510 7.050000e-31 145.0
6 TraesCS6D01G082700 chr6D 88.235 119 11 3 119 234 49854775 49854893 3.280000e-29 139.0
7 TraesCS6D01G082700 chr6D 86.885 61 7 1 2125 2185 88783934 88783875 1.570000e-07 67.6
8 TraesCS6D01G082700 chr6B 91.602 1036 55 14 1415 2447 123729723 123730729 0.000000e+00 1402.0
9 TraesCS6D01G082700 chr6B 89.956 677 41 14 752 1422 123723835 123724490 0.000000e+00 848.0
10 TraesCS6D01G082700 chr6B 89.556 383 25 7 1076 1452 121529599 121529226 2.850000e-129 472.0
11 TraesCS6D01G082700 chr6B 87.909 397 27 8 1122 1508 121732613 121732228 4.800000e-122 448.0
12 TraesCS6D01G082700 chr6B 83.988 331 44 6 775 1102 121733639 121733315 2.360000e-80 309.0
13 TraesCS6D01G082700 chr6B 79.370 349 38 18 786 1111 121529959 121529622 5.300000e-52 215.0
14 TraesCS6D01G082700 chr6B 86.667 135 11 5 93 222 121530458 121530326 2.540000e-30 143.0
15 TraesCS6D01G082700 chr6A 87.330 442 43 7 1076 1508 65133921 65133484 6.080000e-136 494.0
16 TraesCS6D01G082700 chr6A 86.818 440 42 8 1078 1508 65140759 65140327 6.120000e-131 477.0
17 TraesCS6D01G082700 chr6A 87.411 421 38 8 1094 1507 65073688 65073276 1.020000e-128 470.0
18 TraesCS6D01G082700 chr6A 89.266 177 16 2 59 232 67142439 67142615 4.100000e-53 219.0
19 TraesCS6D01G082700 chr6A 85.135 148 14 5 93 234 65074305 65074160 7.050000e-31 145.0
20 TraesCS6D01G082700 chr6A 91.919 99 6 2 475 572 67143143 67143240 1.180000e-28 137.0
21 TraesCS6D01G082700 chr6A 84.800 125 10 7 93 210 65134508 65134386 1.540000e-22 117.0
22 TraesCS6D01G082700 chr1B 90.647 139 11 2 229 367 643254542 643254406 1.490000e-42 183.0
23 TraesCS6D01G082700 chr1B 90.698 129 11 1 238 366 402041907 402042034 1.160000e-38 171.0
24 TraesCS6D01G082700 chr4B 89.928 139 13 1 232 369 606562453 606562591 6.950000e-41 178.0
25 TraesCS6D01G082700 chr4B 90.840 131 11 1 238 367 139144846 139144716 8.990000e-40 174.0
26 TraesCS6D01G082700 chr7B 90.370 135 11 1 235 367 158924361 158924495 2.500000e-40 176.0
27 TraesCS6D01G082700 chr7B 90.698 129 11 1 238 366 720349766 720349639 1.160000e-38 171.0
28 TraesCS6D01G082700 chr7A 88.652 141 14 2 227 366 704614028 704614167 1.160000e-38 171.0
29 TraesCS6D01G082700 chr7A 89.147 129 14 0 238 366 59432073 59431945 7.000000e-36 161.0
30 TraesCS6D01G082700 chr2A 89.922 129 12 1 238 366 92472261 92472134 5.410000e-37 165.0
31 TraesCS6D01G082700 chr2A 90.000 40 4 0 469 508 651808806 651808767 4.000000e-03 52.8
32 TraesCS6D01G082700 chr2B 87.931 58 5 2 2121 2177 166406688 166406632 1.570000e-07 67.6
33 TraesCS6D01G082700 chr2B 95.122 41 2 0 457 497 162633515 162633555 5.650000e-07 65.8
34 TraesCS6D01G082700 chr2B 97.059 34 0 1 465 497 163368837 163368870 3.400000e-04 56.5
35 TraesCS6D01G082700 chr2D 95.122 41 2 0 457 497 112526890 112526930 5.650000e-07 65.8
36 TraesCS6D01G082700 chr5A 100.000 34 0 0 463 496 52278857 52278824 2.030000e-06 63.9
37 TraesCS6D01G082700 chr5A 100.000 30 0 0 467 496 588377973 588378002 3.400000e-04 56.5
38 TraesCS6D01G082700 chr4D 100.000 34 0 0 463 496 428381101 428381134 2.030000e-06 63.9
39 TraesCS6D01G082700 chr4A 90.000 50 2 3 463 511 577859505 577859458 7.310000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G082700 chr6D 47809554 47812000 2446 True 4519.000000 4519 100.000000 1 2447 1 chr6D.!!$R1 2446
1 TraesCS6D01G082700 chr6D 49842380 49843447 1067 False 361.000000 444 85.577000 776 1451 2 chr6D.!!$F1 675
2 TraesCS6D01G082700 chr6D 49848365 49849413 1048 False 341.500000 538 87.280000 93 1502 2 chr6D.!!$F2 1409
3 TraesCS6D01G082700 chr6D 49854775 49855775 1000 False 329.500000 520 88.652500 119 1502 2 chr6D.!!$F3 1383
4 TraesCS6D01G082700 chr6B 123729723 123730729 1006 False 1402.000000 1402 91.602000 1415 2447 1 chr6B.!!$F2 1032
5 TraesCS6D01G082700 chr6B 123723835 123724490 655 False 848.000000 848 89.956000 752 1422 1 chr6B.!!$F1 670
6 TraesCS6D01G082700 chr6B 121732228 121733639 1411 True 378.500000 448 85.948500 775 1508 2 chr6B.!!$R2 733
7 TraesCS6D01G082700 chr6B 121529226 121530458 1232 True 276.666667 472 85.197667 93 1452 3 chr6B.!!$R1 1359
8 TraesCS6D01G082700 chr6A 65073276 65074305 1029 True 307.500000 470 86.273000 93 1507 2 chr6A.!!$R2 1414
9 TraesCS6D01G082700 chr6A 65133484 65134508 1024 True 305.500000 494 86.065000 93 1508 2 chr6A.!!$R3 1415

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.03779 TAAAACCAAAGCGCATGCCC 60.038 50.0 13.15 2.3 44.31 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1645 2786 0.039074 GATCGATGATCTTCGGCCGT 60.039 55.0 27.15 5.04 39.56 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.931969 TGCTGAATGTGAGTAAGATGCG 59.068 45.455 0.00 0.00 0.00 4.73
22 23 3.190079 GCTGAATGTGAGTAAGATGCGA 58.810 45.455 0.00 0.00 0.00 5.10
23 24 3.000724 GCTGAATGTGAGTAAGATGCGAC 59.999 47.826 0.00 0.00 0.00 5.19
24 25 4.176271 CTGAATGTGAGTAAGATGCGACA 58.824 43.478 0.00 0.00 0.00 4.35
25 26 3.926527 TGAATGTGAGTAAGATGCGACAC 59.073 43.478 0.00 0.00 0.00 3.67
26 27 3.592898 ATGTGAGTAAGATGCGACACA 57.407 42.857 0.00 0.00 41.28 3.72
27 28 3.378911 TGTGAGTAAGATGCGACACAA 57.621 42.857 0.00 0.00 35.77 3.33
28 29 3.317150 TGTGAGTAAGATGCGACACAAG 58.683 45.455 0.00 0.00 35.77 3.16
29 30 2.668457 GTGAGTAAGATGCGACACAAGG 59.332 50.000 0.00 0.00 0.00 3.61
30 31 2.560981 TGAGTAAGATGCGACACAAGGA 59.439 45.455 0.00 0.00 0.00 3.36
31 32 3.006430 TGAGTAAGATGCGACACAAGGAA 59.994 43.478 0.00 0.00 0.00 3.36
32 33 3.326747 AGTAAGATGCGACACAAGGAAC 58.673 45.455 0.00 0.00 0.00 3.62
33 34 1.523758 AAGATGCGACACAAGGAACC 58.476 50.000 0.00 0.00 0.00 3.62
34 35 0.396435 AGATGCGACACAAGGAACCA 59.604 50.000 0.00 0.00 0.00 3.67
35 36 1.202758 AGATGCGACACAAGGAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
36 37 1.606668 GATGCGACACAAGGAACCAAA 59.393 47.619 0.00 0.00 0.00 3.28
37 38 0.736053 TGCGACACAAGGAACCAAAC 59.264 50.000 0.00 0.00 0.00 2.93
38 39 0.736053 GCGACACAAGGAACCAAACA 59.264 50.000 0.00 0.00 0.00 2.83
39 40 1.533129 GCGACACAAGGAACCAAACAC 60.533 52.381 0.00 0.00 0.00 3.32
40 41 1.267832 CGACACAAGGAACCAAACACG 60.268 52.381 0.00 0.00 0.00 4.49
41 42 0.454196 ACACAAGGAACCAAACACGC 59.546 50.000 0.00 0.00 0.00 5.34
42 43 0.738389 CACAAGGAACCAAACACGCT 59.262 50.000 0.00 0.00 0.00 5.07
43 44 1.021968 ACAAGGAACCAAACACGCTC 58.978 50.000 0.00 0.00 0.00 5.03
44 45 1.308998 CAAGGAACCAAACACGCTCT 58.691 50.000 0.00 0.00 0.00 4.09
45 46 1.676006 CAAGGAACCAAACACGCTCTT 59.324 47.619 0.00 0.00 0.00 2.85
46 47 2.875933 CAAGGAACCAAACACGCTCTTA 59.124 45.455 0.00 0.00 0.00 2.10
47 48 2.767505 AGGAACCAAACACGCTCTTAG 58.232 47.619 0.00 0.00 0.00 2.18
48 49 2.104281 AGGAACCAAACACGCTCTTAGT 59.896 45.455 0.00 0.00 0.00 2.24
49 50 3.322828 AGGAACCAAACACGCTCTTAGTA 59.677 43.478 0.00 0.00 0.00 1.82
50 51 4.020485 AGGAACCAAACACGCTCTTAGTAT 60.020 41.667 0.00 0.00 0.00 2.12
51 52 4.694037 GGAACCAAACACGCTCTTAGTATT 59.306 41.667 0.00 0.00 0.00 1.89
52 53 5.180680 GGAACCAAACACGCTCTTAGTATTT 59.819 40.000 0.00 0.00 0.00 1.40
53 54 6.293790 GGAACCAAACACGCTCTTAGTATTTT 60.294 38.462 0.00 0.00 0.00 1.82
54 55 7.095102 GGAACCAAACACGCTCTTAGTATTTTA 60.095 37.037 0.00 0.00 0.00 1.52
55 56 7.125536 ACCAAACACGCTCTTAGTATTTTAC 57.874 36.000 0.00 0.00 0.00 2.01
56 57 6.148315 ACCAAACACGCTCTTAGTATTTTACC 59.852 38.462 0.00 0.00 0.00 2.85
57 58 6.238508 CAAACACGCTCTTAGTATTTTACCG 58.761 40.000 0.00 0.00 0.00 4.02
58 59 4.427312 ACACGCTCTTAGTATTTTACCGG 58.573 43.478 0.00 0.00 0.00 5.28
59 60 3.800506 CACGCTCTTAGTATTTTACCGGG 59.199 47.826 6.32 0.00 0.00 5.73
60 61 3.181472 ACGCTCTTAGTATTTTACCGGGG 60.181 47.826 6.32 0.00 0.00 5.73
61 62 3.136763 GCTCTTAGTATTTTACCGGGGC 58.863 50.000 6.32 0.00 0.00 5.80
62 63 3.432608 GCTCTTAGTATTTTACCGGGGCA 60.433 47.826 6.32 0.00 0.00 5.36
63 64 4.773013 CTCTTAGTATTTTACCGGGGCAA 58.227 43.478 6.32 0.00 0.00 4.52
64 65 5.374071 CTCTTAGTATTTTACCGGGGCAAT 58.626 41.667 6.32 2.74 0.00 3.56
65 66 5.370679 TCTTAGTATTTTACCGGGGCAATC 58.629 41.667 6.32 0.00 0.00 2.67
66 67 3.945640 AGTATTTTACCGGGGCAATCT 57.054 42.857 6.32 0.00 0.00 2.40
67 68 4.245251 AGTATTTTACCGGGGCAATCTT 57.755 40.909 6.32 0.00 0.00 2.40
68 69 3.951680 AGTATTTTACCGGGGCAATCTTG 59.048 43.478 6.32 0.00 0.00 3.02
69 70 2.588464 TTTTACCGGGGCAATCTTGA 57.412 45.000 6.32 0.00 0.00 3.02
70 71 2.122783 TTTACCGGGGCAATCTTGAG 57.877 50.000 6.32 0.00 0.00 3.02
71 72 0.393808 TTACCGGGGCAATCTTGAGC 60.394 55.000 6.32 0.00 0.00 4.26
72 73 1.271840 TACCGGGGCAATCTTGAGCT 61.272 55.000 6.32 0.00 0.00 4.09
73 74 1.271840 ACCGGGGCAATCTTGAGCTA 61.272 55.000 6.32 0.00 0.00 3.32
74 75 0.107214 CCGGGGCAATCTTGAGCTAA 60.107 55.000 0.00 0.00 0.00 3.09
75 76 1.681780 CCGGGGCAATCTTGAGCTAAA 60.682 52.381 0.00 0.00 0.00 1.85
76 77 2.091541 CGGGGCAATCTTGAGCTAAAA 58.908 47.619 0.00 0.00 0.00 1.52
77 78 2.159379 CGGGGCAATCTTGAGCTAAAAC 60.159 50.000 0.00 0.00 0.00 2.43
78 79 2.166459 GGGGCAATCTTGAGCTAAAACC 59.834 50.000 0.00 0.00 0.00 3.27
79 80 2.825532 GGGCAATCTTGAGCTAAAACCA 59.174 45.455 0.00 0.00 0.00 3.67
80 81 3.258123 GGGCAATCTTGAGCTAAAACCAA 59.742 43.478 0.00 0.00 0.00 3.67
81 82 4.262420 GGGCAATCTTGAGCTAAAACCAAA 60.262 41.667 0.00 0.00 0.00 3.28
82 83 4.925646 GGCAATCTTGAGCTAAAACCAAAG 59.074 41.667 0.00 0.00 0.00 2.77
83 84 4.386954 GCAATCTTGAGCTAAAACCAAAGC 59.613 41.667 0.00 0.00 39.08 3.51
84 85 3.896648 TCTTGAGCTAAAACCAAAGCG 57.103 42.857 0.00 0.00 43.63 4.68
85 86 2.031157 TCTTGAGCTAAAACCAAAGCGC 60.031 45.455 0.00 0.00 43.63 5.92
86 87 1.313772 TGAGCTAAAACCAAAGCGCA 58.686 45.000 11.47 0.00 44.61 6.09
87 88 1.885887 TGAGCTAAAACCAAAGCGCAT 59.114 42.857 11.47 0.00 42.46 4.73
88 89 2.253603 GAGCTAAAACCAAAGCGCATG 58.746 47.619 11.47 8.38 43.63 4.06
89 90 0.715551 GCTAAAACCAAAGCGCATGC 59.284 50.000 11.47 7.91 43.24 4.06
90 91 1.349234 CTAAAACCAAAGCGCATGCC 58.651 50.000 13.15 4.99 44.31 4.40
91 92 0.037790 TAAAACCAAAGCGCATGCCC 60.038 50.000 13.15 2.30 44.31 5.36
96 97 2.916703 AAAGCGCATGCCCAACCA 60.917 55.556 13.15 0.00 44.31 3.67
115 118 1.334869 CAGGTGAACTGGTTTCTGTGC 59.665 52.381 0.00 0.00 43.70 4.57
116 119 1.064758 AGGTGAACTGGTTTCTGTGCA 60.065 47.619 0.00 0.00 34.97 4.57
117 120 1.748493 GGTGAACTGGTTTCTGTGCAA 59.252 47.619 0.00 0.00 33.07 4.08
118 121 2.479560 GGTGAACTGGTTTCTGTGCAAC 60.480 50.000 0.00 0.00 33.07 4.17
119 122 1.400142 TGAACTGGTTTCTGTGCAACG 59.600 47.619 0.00 0.00 33.32 4.10
121 124 1.008538 CTGGTTTCTGTGCAACGGC 60.009 57.895 0.00 0.00 44.90 5.68
153 158 2.543012 CGATCATCACTTGTCTCATGCC 59.457 50.000 0.00 0.00 0.00 4.40
215 225 3.242252 GCGTGCATTTTCTCTCTAGAAGC 60.242 47.826 0.00 0.00 42.60 3.86
216 226 3.308323 CGTGCATTTTCTCTCTAGAAGCC 59.692 47.826 0.00 0.00 42.60 4.35
222 232 8.486210 TGCATTTTCTCTCTAGAAGCCTATTTA 58.514 33.333 0.00 0.00 42.60 1.40
223 233 8.769891 GCATTTTCTCTCTAGAAGCCTATTTAC 58.230 37.037 0.00 0.00 42.60 2.01
227 237 4.801164 TCTCTAGAAGCCTATTTACCCGT 58.199 43.478 0.00 0.00 0.00 5.28
228 238 5.945310 TCTCTAGAAGCCTATTTACCCGTA 58.055 41.667 0.00 0.00 0.00 4.02
229 239 5.767168 TCTCTAGAAGCCTATTTACCCGTAC 59.233 44.000 0.00 0.00 0.00 3.67
230 240 5.448654 TCTAGAAGCCTATTTACCCGTACA 58.551 41.667 0.00 0.00 0.00 2.90
231 241 4.397481 AGAAGCCTATTTACCCGTACAC 57.603 45.455 0.00 0.00 0.00 2.90
232 242 3.770933 AGAAGCCTATTTACCCGTACACA 59.229 43.478 0.00 0.00 0.00 3.72
233 243 4.407945 AGAAGCCTATTTACCCGTACACAT 59.592 41.667 0.00 0.00 0.00 3.21
234 244 5.599656 AGAAGCCTATTTACCCGTACACATA 59.400 40.000 0.00 0.00 0.00 2.29
236 246 5.790593 AGCCTATTTACCCGTACACATATG 58.209 41.667 0.00 0.00 0.00 1.78
238 248 5.993441 GCCTATTTACCCGTACACATATGTT 59.007 40.000 5.37 0.84 40.48 2.71
241 251 8.895737 CCTATTTACCCGTACACATATGTTTTT 58.104 33.333 5.37 0.00 40.48 1.94
265 275 8.995419 TTTTAAAACGAAGGCAAAATATTTGC 57.005 26.923 17.18 17.18 44.22 3.68
277 287 7.928908 GCAAAATATTTGCCTCATCGATTAA 57.071 32.000 15.12 0.00 39.38 1.40
278 288 8.524870 GCAAAATATTTGCCTCATCGATTAAT 57.475 30.769 15.12 0.00 39.38 1.40
279 289 8.981647 GCAAAATATTTGCCTCATCGATTAATT 58.018 29.630 15.12 0.00 39.38 1.40
286 296 8.731275 TTTGCCTCATCGATTAATTAAGAAGA 57.269 30.769 3.94 3.72 0.00 2.87
287 297 8.731275 TTGCCTCATCGATTAATTAAGAAGAA 57.269 30.769 3.94 0.00 0.00 2.52
288 298 8.370493 TGCCTCATCGATTAATTAAGAAGAAG 57.630 34.615 3.94 1.26 0.00 2.85
289 299 8.204160 TGCCTCATCGATTAATTAAGAAGAAGA 58.796 33.333 3.94 5.03 0.00 2.87
290 300 8.707839 GCCTCATCGATTAATTAAGAAGAAGAG 58.292 37.037 16.89 16.89 0.00 2.85
291 301 9.973450 CCTCATCGATTAATTAAGAAGAAGAGA 57.027 33.333 21.25 12.30 0.00 3.10
297 307 9.657121 CGATTAATTAAGAAGAAGAGAATTGCC 57.343 33.333 3.94 0.00 0.00 4.52
298 308 9.958234 GATTAATTAAGAAGAAGAGAATTGCCC 57.042 33.333 3.94 0.00 0.00 5.36
299 309 8.877864 TTAATTAAGAAGAAGAGAATTGCCCA 57.122 30.769 0.00 0.00 0.00 5.36
300 310 7.401955 AATTAAGAAGAAGAGAATTGCCCAG 57.598 36.000 0.00 0.00 0.00 4.45
301 311 4.379302 AAGAAGAAGAGAATTGCCCAGT 57.621 40.909 0.00 0.00 0.00 4.00
302 312 4.379302 AGAAGAAGAGAATTGCCCAGTT 57.621 40.909 0.00 0.00 0.00 3.16
303 313 5.505181 AGAAGAAGAGAATTGCCCAGTTA 57.495 39.130 0.00 0.00 0.00 2.24
304 314 5.880901 AGAAGAAGAGAATTGCCCAGTTAA 58.119 37.500 0.00 0.00 0.00 2.01
305 315 6.488715 AGAAGAAGAGAATTGCCCAGTTAAT 58.511 36.000 0.00 0.00 0.00 1.40
306 316 6.950619 AGAAGAAGAGAATTGCCCAGTTAATT 59.049 34.615 0.00 0.00 0.00 1.40
307 317 7.452813 AGAAGAAGAGAATTGCCCAGTTAATTT 59.547 33.333 0.00 0.00 0.00 1.82
308 318 7.544804 AGAAGAGAATTGCCCAGTTAATTTT 57.455 32.000 0.00 0.00 0.00 1.82
309 319 7.966812 AGAAGAGAATTGCCCAGTTAATTTTT 58.033 30.769 0.00 0.00 0.00 1.94
310 320 9.088987 AGAAGAGAATTGCCCAGTTAATTTTTA 57.911 29.630 0.00 0.00 0.00 1.52
311 321 9.358872 GAAGAGAATTGCCCAGTTAATTTTTAG 57.641 33.333 0.00 0.00 0.00 1.85
312 322 8.650143 AGAGAATTGCCCAGTTAATTTTTAGA 57.350 30.769 0.00 0.00 0.00 2.10
313 323 9.088987 AGAGAATTGCCCAGTTAATTTTTAGAA 57.911 29.630 0.00 0.00 0.00 2.10
314 324 9.705290 GAGAATTGCCCAGTTAATTTTTAGAAA 57.295 29.630 0.00 0.00 0.00 2.52
317 327 8.615878 ATTGCCCAGTTAATTTTTAGAAAACC 57.384 30.769 0.00 0.00 0.00 3.27
318 328 7.125792 TGCCCAGTTAATTTTTAGAAAACCA 57.874 32.000 0.00 0.00 0.00 3.67
319 329 7.213678 TGCCCAGTTAATTTTTAGAAAACCAG 58.786 34.615 0.00 0.00 0.00 4.00
320 330 7.070074 TGCCCAGTTAATTTTTAGAAAACCAGA 59.930 33.333 0.00 0.00 0.00 3.86
321 331 7.384115 GCCCAGTTAATTTTTAGAAAACCAGAC 59.616 37.037 0.00 0.00 0.00 3.51
322 332 7.593644 CCCAGTTAATTTTTAGAAAACCAGACG 59.406 37.037 0.00 0.00 0.00 4.18
323 333 8.347035 CCAGTTAATTTTTAGAAAACCAGACGA 58.653 33.333 0.00 0.00 0.00 4.20
324 334 9.724839 CAGTTAATTTTTAGAAAACCAGACGAA 57.275 29.630 0.00 0.00 0.00 3.85
328 338 7.997107 ATTTTTAGAAAACCAGACGAAAACC 57.003 32.000 0.00 0.00 0.00 3.27
329 339 4.799419 TTAGAAAACCAGACGAAAACCG 57.201 40.909 0.00 0.00 45.44 4.44
341 351 3.328237 CGAAAACCGTTACAAGCAACT 57.672 42.857 0.00 0.00 0.00 3.16
342 352 3.285745 CGAAAACCGTTACAAGCAACTC 58.714 45.455 0.00 0.00 0.00 3.01
343 353 3.242478 CGAAAACCGTTACAAGCAACTCA 60.242 43.478 0.00 0.00 0.00 3.41
344 354 4.664188 GAAAACCGTTACAAGCAACTCAA 58.336 39.130 0.00 0.00 0.00 3.02
345 355 4.705337 AAACCGTTACAAGCAACTCAAA 57.295 36.364 0.00 0.00 0.00 2.69
346 356 3.963383 ACCGTTACAAGCAACTCAAAG 57.037 42.857 0.00 0.00 0.00 2.77
347 357 2.616842 ACCGTTACAAGCAACTCAAAGG 59.383 45.455 0.00 0.00 0.00 3.11
348 358 2.604614 CCGTTACAAGCAACTCAAAGGC 60.605 50.000 0.00 0.00 0.00 4.35
349 359 2.650608 GTTACAAGCAACTCAAAGGCG 58.349 47.619 0.00 0.00 0.00 5.52
350 360 1.961793 TACAAGCAACTCAAAGGCGT 58.038 45.000 0.00 0.00 0.00 5.68
351 361 1.961793 ACAAGCAACTCAAAGGCGTA 58.038 45.000 0.00 0.00 0.00 4.42
352 362 1.602377 ACAAGCAACTCAAAGGCGTAC 59.398 47.619 0.00 0.00 0.00 3.67
353 363 1.873591 CAAGCAACTCAAAGGCGTACT 59.126 47.619 0.00 0.00 0.00 2.73
354 364 3.064207 CAAGCAACTCAAAGGCGTACTA 58.936 45.455 0.00 0.00 0.00 1.82
355 365 2.685100 AGCAACTCAAAGGCGTACTAC 58.315 47.619 0.00 0.00 0.00 2.73
356 366 2.299297 AGCAACTCAAAGGCGTACTACT 59.701 45.455 0.00 0.00 0.00 2.57
357 367 2.666994 GCAACTCAAAGGCGTACTACTC 59.333 50.000 0.00 0.00 0.00 2.59
358 368 3.859627 GCAACTCAAAGGCGTACTACTCA 60.860 47.826 0.00 0.00 0.00 3.41
359 369 3.572604 ACTCAAAGGCGTACTACTCAC 57.427 47.619 0.00 0.00 0.00 3.51
360 370 2.889045 ACTCAAAGGCGTACTACTCACA 59.111 45.455 0.00 0.00 0.00 3.58
361 371 3.243336 CTCAAAGGCGTACTACTCACAC 58.757 50.000 0.00 0.00 0.00 3.82
362 372 2.624364 TCAAAGGCGTACTACTCACACA 59.376 45.455 0.00 0.00 0.00 3.72
363 373 3.068448 TCAAAGGCGTACTACTCACACAA 59.932 43.478 0.00 0.00 0.00 3.33
364 374 2.719426 AGGCGTACTACTCACACAAC 57.281 50.000 0.00 0.00 0.00 3.32
365 375 1.958579 AGGCGTACTACTCACACAACA 59.041 47.619 0.00 0.00 0.00 3.33
366 376 2.363038 AGGCGTACTACTCACACAACAA 59.637 45.455 0.00 0.00 0.00 2.83
367 377 2.473984 GGCGTACTACTCACACAACAAC 59.526 50.000 0.00 0.00 0.00 3.32
368 378 3.117794 GCGTACTACTCACACAACAACA 58.882 45.455 0.00 0.00 0.00 3.33
369 379 3.739300 GCGTACTACTCACACAACAACAT 59.261 43.478 0.00 0.00 0.00 2.71
370 380 4.376008 GCGTACTACTCACACAACAACATG 60.376 45.833 0.00 0.00 0.00 3.21
371 381 4.743151 CGTACTACTCACACAACAACATGT 59.257 41.667 0.00 0.00 0.00 3.21
372 382 5.107989 CGTACTACTCACACAACAACATGTC 60.108 44.000 0.00 0.00 0.00 3.06
373 383 4.127171 ACTACTCACACAACAACATGTCC 58.873 43.478 0.00 0.00 0.00 4.02
374 384 1.939934 ACTCACACAACAACATGTCCG 59.060 47.619 0.00 0.00 0.00 4.79
375 385 1.939934 CTCACACAACAACATGTCCGT 59.060 47.619 0.00 0.00 0.00 4.69
376 386 3.127589 CTCACACAACAACATGTCCGTA 58.872 45.455 0.00 0.00 0.00 4.02
377 387 2.867368 TCACACAACAACATGTCCGTAC 59.133 45.455 0.00 0.00 0.00 3.67
378 388 2.609916 CACACAACAACATGTCCGTACA 59.390 45.455 0.00 0.00 40.69 2.90
388 398 6.073440 ACAACATGTCCGTACAAACATTAGAC 60.073 38.462 0.00 0.00 39.58 2.59
390 400 3.577667 TGTCCGTACAAACATTAGACCG 58.422 45.455 0.00 0.00 30.91 4.79
391 401 3.255395 TGTCCGTACAAACATTAGACCGA 59.745 43.478 0.00 0.00 30.91 4.69
392 402 4.082081 TGTCCGTACAAACATTAGACCGAT 60.082 41.667 0.00 0.00 30.91 4.18
393 403 4.866486 GTCCGTACAAACATTAGACCGATT 59.134 41.667 0.00 0.00 0.00 3.34
394 404 5.349543 GTCCGTACAAACATTAGACCGATTT 59.650 40.000 0.00 0.00 0.00 2.17
476 486 4.898829 TTTCATTATTCGGCATGAGTGG 57.101 40.909 0.00 0.00 31.04 4.00
477 487 3.558931 TCATTATTCGGCATGAGTGGT 57.441 42.857 0.00 0.00 0.00 4.16
478 488 3.205338 TCATTATTCGGCATGAGTGGTG 58.795 45.455 0.00 0.00 0.00 4.17
479 489 3.118445 TCATTATTCGGCATGAGTGGTGA 60.118 43.478 0.00 0.00 0.00 4.02
480 490 2.602257 TATTCGGCATGAGTGGTGAG 57.398 50.000 0.00 0.00 0.00 3.51
481 491 0.745845 ATTCGGCATGAGTGGTGAGC 60.746 55.000 0.00 0.00 0.00 4.26
482 492 1.830587 TTCGGCATGAGTGGTGAGCT 61.831 55.000 0.00 0.00 0.00 4.09
483 493 0.970427 TCGGCATGAGTGGTGAGCTA 60.970 55.000 0.00 0.00 0.00 3.32
484 494 0.105593 CGGCATGAGTGGTGAGCTAT 59.894 55.000 0.00 0.00 0.00 2.97
485 495 1.871408 CGGCATGAGTGGTGAGCTATC 60.871 57.143 0.00 0.00 0.00 2.08
486 496 1.415659 GGCATGAGTGGTGAGCTATCT 59.584 52.381 0.00 0.00 0.00 1.98
487 497 2.547642 GGCATGAGTGGTGAGCTATCTC 60.548 54.545 0.00 0.00 39.78 2.75
488 498 2.102084 GCATGAGTGGTGAGCTATCTCA 59.898 50.000 0.00 0.00 46.43 3.27
502 512 8.087982 TGAGCTATCTCAAAAACAAACTACAG 57.912 34.615 0.00 0.00 45.69 2.74
503 513 7.715249 TGAGCTATCTCAAAAACAAACTACAGT 59.285 33.333 0.00 0.00 45.69 3.55
504 514 9.204570 GAGCTATCTCAAAAACAAACTACAGTA 57.795 33.333 0.00 0.00 39.16 2.74
505 515 9.555727 AGCTATCTCAAAAACAAACTACAGTAA 57.444 29.630 0.00 0.00 0.00 2.24
532 542 2.678443 CGTCTGATACGCACGAAAAG 57.322 50.000 0.00 0.00 46.10 2.27
533 543 2.247637 CGTCTGATACGCACGAAAAGA 58.752 47.619 0.00 0.00 46.10 2.52
534 544 2.852413 CGTCTGATACGCACGAAAAGAT 59.148 45.455 0.00 0.00 46.10 2.40
535 545 4.033019 CGTCTGATACGCACGAAAAGATA 58.967 43.478 0.00 0.00 46.10 1.98
536 546 4.675565 CGTCTGATACGCACGAAAAGATAT 59.324 41.667 0.00 0.00 46.10 1.63
537 547 5.173312 CGTCTGATACGCACGAAAAGATATT 59.827 40.000 0.00 0.00 46.10 1.28
538 548 6.291637 CGTCTGATACGCACGAAAAGATATTT 60.292 38.462 0.00 0.00 46.10 1.40
539 549 7.399523 GTCTGATACGCACGAAAAGATATTTT 58.600 34.615 0.00 0.00 0.00 1.82
540 550 7.903431 GTCTGATACGCACGAAAAGATATTTTT 59.097 33.333 0.00 0.00 0.00 1.94
541 551 9.089601 TCTGATACGCACGAAAAGATATTTTTA 57.910 29.630 0.00 0.00 0.00 1.52
542 552 9.697250 CTGATACGCACGAAAAGATATTTTTAA 57.303 29.630 0.00 0.00 0.00 1.52
543 553 9.697250 TGATACGCACGAAAAGATATTTTTAAG 57.303 29.630 0.00 0.00 0.00 1.85
544 554 6.848470 ACGCACGAAAAGATATTTTTAAGC 57.152 33.333 0.00 3.77 0.00 3.09
545 555 6.608610 ACGCACGAAAAGATATTTTTAAGCT 58.391 32.000 0.00 0.00 0.00 3.74
546 556 6.741358 ACGCACGAAAAGATATTTTTAAGCTC 59.259 34.615 0.00 0.00 0.00 4.09
547 557 6.076607 CGCACGAAAAGATATTTTTAAGCTCG 60.077 38.462 0.00 8.28 0.00 5.03
548 558 6.194692 GCACGAAAAGATATTTTTAAGCTCGG 59.805 38.462 12.43 5.65 0.00 4.63
549 559 7.241376 CACGAAAAGATATTTTTAAGCTCGGT 58.759 34.615 12.43 0.74 0.00 4.69
550 560 7.749126 CACGAAAAGATATTTTTAAGCTCGGTT 59.251 33.333 12.43 0.00 0.00 4.44
551 561 8.294577 ACGAAAAGATATTTTTAAGCTCGGTTT 58.705 29.630 12.43 0.00 0.00 3.27
552 562 9.763465 CGAAAAGATATTTTTAAGCTCGGTTTA 57.237 29.630 0.00 0.00 0.00 2.01
556 566 9.836076 AAGATATTTTTAAGCTCGGTTTACAAC 57.164 29.630 0.00 0.00 0.00 3.32
557 567 9.227777 AGATATTTTTAAGCTCGGTTTACAACT 57.772 29.630 0.00 0.00 0.00 3.16
560 570 5.827568 TTTAAGCTCGGTTTACAACTACG 57.172 39.130 0.00 0.00 0.00 3.51
561 571 3.375782 AAGCTCGGTTTACAACTACGT 57.624 42.857 0.00 0.00 0.00 3.57
562 572 2.669364 AGCTCGGTTTACAACTACGTG 58.331 47.619 0.00 0.00 0.00 4.49
563 573 2.035066 AGCTCGGTTTACAACTACGTGT 59.965 45.455 0.00 0.00 35.43 4.49
564 574 2.406357 GCTCGGTTTACAACTACGTGTC 59.594 50.000 0.00 0.00 32.75 3.67
565 575 2.982470 CTCGGTTTACAACTACGTGTCC 59.018 50.000 0.00 0.00 32.75 4.02
566 576 2.360483 TCGGTTTACAACTACGTGTCCA 59.640 45.455 0.00 0.00 32.75 4.02
567 577 2.727798 CGGTTTACAACTACGTGTCCAG 59.272 50.000 0.00 0.00 32.75 3.86
568 578 3.550639 CGGTTTACAACTACGTGTCCAGA 60.551 47.826 0.00 0.00 32.75 3.86
569 579 4.370917 GGTTTACAACTACGTGTCCAGAA 58.629 43.478 0.00 0.00 32.75 3.02
570 580 4.209911 GGTTTACAACTACGTGTCCAGAAC 59.790 45.833 0.00 0.00 32.75 3.01
571 581 4.924305 TTACAACTACGTGTCCAGAACT 57.076 40.909 0.00 0.00 32.75 3.01
572 582 3.366440 ACAACTACGTGTCCAGAACTC 57.634 47.619 0.00 0.00 0.00 3.01
573 583 2.035576 ACAACTACGTGTCCAGAACTCC 59.964 50.000 0.00 0.00 0.00 3.85
574 584 1.991121 ACTACGTGTCCAGAACTCCA 58.009 50.000 0.00 0.00 0.00 3.86
575 585 1.887198 ACTACGTGTCCAGAACTCCAG 59.113 52.381 0.00 0.00 0.00 3.86
576 586 1.202582 CTACGTGTCCAGAACTCCAGG 59.797 57.143 0.00 0.00 0.00 4.45
577 587 0.469331 ACGTGTCCAGAACTCCAGGA 60.469 55.000 0.00 0.00 0.00 3.86
578 588 0.679505 CGTGTCCAGAACTCCAGGAA 59.320 55.000 0.00 0.00 32.30 3.36
579 589 1.070134 CGTGTCCAGAACTCCAGGAAA 59.930 52.381 0.00 0.00 32.30 3.13
580 590 2.772287 GTGTCCAGAACTCCAGGAAAG 58.228 52.381 0.00 0.00 32.30 2.62
581 591 2.368875 GTGTCCAGAACTCCAGGAAAGA 59.631 50.000 0.00 0.00 32.30 2.52
582 592 3.045634 TGTCCAGAACTCCAGGAAAGAA 58.954 45.455 0.00 0.00 32.30 2.52
583 593 3.458118 TGTCCAGAACTCCAGGAAAGAAA 59.542 43.478 0.00 0.00 32.30 2.52
584 594 3.815962 GTCCAGAACTCCAGGAAAGAAAC 59.184 47.826 0.00 0.00 32.30 2.78
585 595 3.458118 TCCAGAACTCCAGGAAAGAAACA 59.542 43.478 0.00 0.00 0.00 2.83
586 596 4.080015 TCCAGAACTCCAGGAAAGAAACAA 60.080 41.667 0.00 0.00 0.00 2.83
587 597 4.644685 CCAGAACTCCAGGAAAGAAACAAA 59.355 41.667 0.00 0.00 0.00 2.83
588 598 5.127031 CCAGAACTCCAGGAAAGAAACAAAA 59.873 40.000 0.00 0.00 0.00 2.44
589 599 6.183360 CCAGAACTCCAGGAAAGAAACAAAAT 60.183 38.462 0.00 0.00 0.00 1.82
590 600 7.267857 CAGAACTCCAGGAAAGAAACAAAATT 58.732 34.615 0.00 0.00 0.00 1.82
591 601 8.413229 CAGAACTCCAGGAAAGAAACAAAATTA 58.587 33.333 0.00 0.00 0.00 1.40
592 602 8.977412 AGAACTCCAGGAAAGAAACAAAATTAA 58.023 29.630 0.00 0.00 0.00 1.40
593 603 9.594478 GAACTCCAGGAAAGAAACAAAATTAAA 57.406 29.630 0.00 0.00 0.00 1.52
594 604 8.942338 ACTCCAGGAAAGAAACAAAATTAAAC 57.058 30.769 0.00 0.00 0.00 2.01
595 605 8.536175 ACTCCAGGAAAGAAACAAAATTAAACA 58.464 29.630 0.00 0.00 0.00 2.83
596 606 8.940768 TCCAGGAAAGAAACAAAATTAAACAG 57.059 30.769 0.00 0.00 0.00 3.16
597 607 7.494298 TCCAGGAAAGAAACAAAATTAAACAGC 59.506 33.333 0.00 0.00 0.00 4.40
598 608 7.279758 CCAGGAAAGAAACAAAATTAAACAGCA 59.720 33.333 0.00 0.00 0.00 4.41
599 609 8.663911 CAGGAAAGAAACAAAATTAAACAGCAA 58.336 29.630 0.00 0.00 0.00 3.91
600 610 9.394767 AGGAAAGAAACAAAATTAAACAGCAAT 57.605 25.926 0.00 0.00 0.00 3.56
604 614 9.522804 AAGAAACAAAATTAAACAGCAATACGA 57.477 25.926 0.00 0.00 0.00 3.43
605 615 8.964150 AGAAACAAAATTAAACAGCAATACGAC 58.036 29.630 0.00 0.00 0.00 4.34
606 616 8.865590 AAACAAAATTAAACAGCAATACGACT 57.134 26.923 0.00 0.00 0.00 4.18
607 617 8.502161 AACAAAATTAAACAGCAATACGACTC 57.498 30.769 0.00 0.00 0.00 3.36
608 618 6.795114 ACAAAATTAAACAGCAATACGACTCG 59.205 34.615 0.00 0.00 0.00 4.18
609 619 6.476243 AAATTAAACAGCAATACGACTCGT 57.524 33.333 9.45 9.45 44.35 4.18
610 620 4.896562 TTAAACAGCAATACGACTCGTG 57.103 40.909 14.47 0.00 41.39 4.35
611 621 2.433868 AACAGCAATACGACTCGTGT 57.566 45.000 14.47 4.53 41.39 4.49
612 622 1.698165 ACAGCAATACGACTCGTGTG 58.302 50.000 14.47 12.45 41.39 3.82
613 623 1.000607 ACAGCAATACGACTCGTGTGT 60.001 47.619 14.47 6.88 41.39 3.72
614 624 1.386748 CAGCAATACGACTCGTGTGTG 59.613 52.381 14.47 9.84 41.39 3.82
615 625 1.000607 AGCAATACGACTCGTGTGTGT 60.001 47.619 14.47 0.00 41.39 3.72
616 626 1.124297 GCAATACGACTCGTGTGTGTG 59.876 52.381 14.47 4.46 41.39 3.82
617 627 1.124297 CAATACGACTCGTGTGTGTGC 59.876 52.381 14.47 0.00 41.39 4.57
618 628 0.312729 ATACGACTCGTGTGTGTGCA 59.687 50.000 14.47 0.00 41.39 4.57
619 629 0.100861 TACGACTCGTGTGTGTGCAA 59.899 50.000 14.47 0.00 41.39 4.08
620 630 0.738063 ACGACTCGTGTGTGTGCAAA 60.738 50.000 2.53 0.00 39.18 3.68
621 631 0.371989 CGACTCGTGTGTGTGCAAAA 59.628 50.000 0.00 0.00 0.00 2.44
622 632 1.201976 CGACTCGTGTGTGTGCAAAAA 60.202 47.619 0.00 0.00 0.00 1.94
642 652 3.839654 TCGAAGTACGATGCGATCC 57.160 52.632 0.00 0.00 46.45 3.36
643 653 1.018910 TCGAAGTACGATGCGATCCA 58.981 50.000 0.00 0.00 46.45 3.41
644 654 1.607148 TCGAAGTACGATGCGATCCAT 59.393 47.619 0.00 0.00 46.45 3.41
645 655 2.809696 TCGAAGTACGATGCGATCCATA 59.190 45.455 0.00 0.00 46.45 2.74
646 656 3.120304 TCGAAGTACGATGCGATCCATAG 60.120 47.826 0.00 1.04 46.45 2.23
647 657 3.120304 CGAAGTACGATGCGATCCATAGA 60.120 47.826 9.93 0.00 45.77 1.98
648 658 4.437524 CGAAGTACGATGCGATCCATAGAT 60.438 45.833 9.93 0.00 45.77 1.98
649 659 5.220605 CGAAGTACGATGCGATCCATAGATA 60.221 44.000 9.93 0.29 45.77 1.98
650 660 6.510879 AAGTACGATGCGATCCATAGATAA 57.489 37.500 9.93 0.00 33.29 1.75
651 661 6.510879 AGTACGATGCGATCCATAGATAAA 57.489 37.500 9.93 0.00 33.29 1.40
652 662 6.920817 AGTACGATGCGATCCATAGATAAAA 58.079 36.000 9.93 0.00 33.29 1.52
653 663 7.375834 AGTACGATGCGATCCATAGATAAAAA 58.624 34.615 9.93 0.00 33.29 1.94
654 664 8.035394 AGTACGATGCGATCCATAGATAAAAAT 58.965 33.333 9.93 0.00 33.29 1.82
655 665 7.672983 ACGATGCGATCCATAGATAAAAATT 57.327 32.000 9.93 0.00 33.29 1.82
656 666 7.521529 ACGATGCGATCCATAGATAAAAATTG 58.478 34.615 9.93 0.00 33.29 2.32
657 667 6.467047 CGATGCGATCCATAGATAAAAATTGC 59.533 38.462 0.00 0.00 33.29 3.56
658 668 6.631971 TGCGATCCATAGATAAAAATTGCA 57.368 33.333 0.00 0.00 32.54 4.08
659 669 7.218228 TGCGATCCATAGATAAAAATTGCAT 57.782 32.000 0.00 0.00 30.58 3.96
660 670 7.660112 TGCGATCCATAGATAAAAATTGCATT 58.340 30.769 0.00 0.00 30.58 3.56
661 671 7.809331 TGCGATCCATAGATAAAAATTGCATTC 59.191 33.333 0.00 0.00 30.58 2.67
662 672 7.809331 GCGATCCATAGATAAAAATTGCATTCA 59.191 33.333 0.00 0.00 30.90 2.57
663 673 9.850628 CGATCCATAGATAAAAATTGCATTCAT 57.149 29.630 0.00 0.00 30.90 2.57
667 677 8.922676 CCATAGATAAAAATTGCATTCATCTGC 58.077 33.333 0.00 0.00 42.62 4.26
668 678 9.692749 CATAGATAAAAATTGCATTCATCTGCT 57.307 29.630 0.00 0.00 42.75 4.24
671 681 9.745880 AGATAAAAATTGCATTCATCTGCTTAG 57.254 29.630 0.00 0.00 42.75 2.18
672 682 9.740239 GATAAAAATTGCATTCATCTGCTTAGA 57.260 29.630 0.00 0.00 42.75 2.10
674 684 8.836268 AAAAATTGCATTCATCTGCTTAGAAA 57.164 26.923 0.00 0.00 42.75 2.52
675 685 7.823149 AAATTGCATTCATCTGCTTAGAAAC 57.177 32.000 0.00 0.00 42.75 2.78
676 686 5.963176 TTGCATTCATCTGCTTAGAAACA 57.037 34.783 0.00 0.00 42.75 2.83
677 687 6.519679 TTGCATTCATCTGCTTAGAAACAT 57.480 33.333 0.00 0.00 42.75 2.71
678 688 5.886992 TGCATTCATCTGCTTAGAAACATG 58.113 37.500 0.00 0.00 42.75 3.21
679 689 5.416639 TGCATTCATCTGCTTAGAAACATGT 59.583 36.000 0.00 0.00 42.75 3.21
680 690 6.071784 TGCATTCATCTGCTTAGAAACATGTT 60.072 34.615 4.92 4.92 42.75 2.71
681 691 6.252869 GCATTCATCTGCTTAGAAACATGTTG 59.747 38.462 12.82 0.00 39.12 3.33
682 692 5.300969 TCATCTGCTTAGAAACATGTTGC 57.699 39.130 12.82 10.70 0.00 4.17
683 693 5.005740 TCATCTGCTTAGAAACATGTTGCT 58.994 37.500 22.71 22.71 32.15 3.91
684 694 5.122869 TCATCTGCTTAGAAACATGTTGCTC 59.877 40.000 22.78 12.06 29.59 4.26
685 695 4.645535 TCTGCTTAGAAACATGTTGCTCT 58.354 39.130 22.78 18.50 29.59 4.09
686 696 5.793817 TCTGCTTAGAAACATGTTGCTCTA 58.206 37.500 22.78 17.49 29.59 2.43
687 697 5.639506 TCTGCTTAGAAACATGTTGCTCTAC 59.360 40.000 22.78 13.00 29.59 2.59
688 698 5.304778 TGCTTAGAAACATGTTGCTCTACA 58.695 37.500 22.78 15.31 29.59 2.74
689 699 5.939883 TGCTTAGAAACATGTTGCTCTACAT 59.060 36.000 22.78 0.46 39.27 2.29
690 700 7.102993 TGCTTAGAAACATGTTGCTCTACATA 58.897 34.615 22.78 1.05 36.64 2.29
691 701 7.770433 TGCTTAGAAACATGTTGCTCTACATAT 59.230 33.333 22.78 0.00 36.64 1.78
692 702 8.616076 GCTTAGAAACATGTTGCTCTACATATT 58.384 33.333 22.78 0.00 36.64 1.28
693 703 9.926751 CTTAGAAACATGTTGCTCTACATATTG 57.073 33.333 22.78 4.51 36.64 1.90
694 704 7.928307 AGAAACATGTTGCTCTACATATTGT 57.072 32.000 13.76 0.00 36.64 2.71
695 705 8.340618 AGAAACATGTTGCTCTACATATTGTT 57.659 30.769 13.76 0.00 36.64 2.83
696 706 8.454106 AGAAACATGTTGCTCTACATATTGTTC 58.546 33.333 13.76 0.70 36.64 3.18
697 707 6.349973 ACATGTTGCTCTACATATTGTTCG 57.650 37.500 0.00 0.00 36.64 3.95
698 708 4.857871 TGTTGCTCTACATATTGTTCGC 57.142 40.909 0.00 0.00 0.00 4.70
699 709 4.249661 TGTTGCTCTACATATTGTTCGCA 58.750 39.130 0.00 0.00 0.00 5.10
700 710 4.092821 TGTTGCTCTACATATTGTTCGCAC 59.907 41.667 0.00 0.00 29.82 5.34
701 711 3.855858 TGCTCTACATATTGTTCGCACA 58.144 40.909 0.00 0.00 0.00 4.57
702 712 8.958648 ATGTTGCTCTACATATTGTTCGCACAA 61.959 37.037 2.43 2.43 38.02 3.33
703 713 4.092821 TGCTCTACATATTGTTCGCACAAC 59.907 41.667 1.88 0.00 45.88 3.32
704 714 4.330074 GCTCTACATATTGTTCGCACAACT 59.670 41.667 1.88 0.00 45.88 3.16
705 715 5.518847 GCTCTACATATTGTTCGCACAACTA 59.481 40.000 1.88 0.00 45.88 2.24
706 716 6.508088 GCTCTACATATTGTTCGCACAACTAC 60.508 42.308 1.88 0.00 45.88 2.73
707 717 6.627243 TCTACATATTGTTCGCACAACTACT 58.373 36.000 1.88 0.00 45.88 2.57
708 718 7.764331 TCTACATATTGTTCGCACAACTACTA 58.236 34.615 1.88 0.00 45.88 1.82
709 719 8.410912 TCTACATATTGTTCGCACAACTACTAT 58.589 33.333 1.88 0.00 45.88 2.12
710 720 7.843490 ACATATTGTTCGCACAACTACTATT 57.157 32.000 1.88 0.00 45.88 1.73
711 721 8.936070 ACATATTGTTCGCACAACTACTATTA 57.064 30.769 1.88 0.00 45.88 0.98
712 722 9.542462 ACATATTGTTCGCACAACTACTATTAT 57.458 29.630 1.88 0.00 45.88 1.28
716 726 7.459394 TGTTCGCACAACTACTATTATTAGC 57.541 36.000 0.00 0.00 0.00 3.09
717 727 6.477688 TGTTCGCACAACTACTATTATTAGCC 59.522 38.462 0.00 0.00 0.00 3.93
718 728 6.401047 TCGCACAACTACTATTATTAGCCT 57.599 37.500 0.00 0.00 0.00 4.58
719 729 6.812998 TCGCACAACTACTATTATTAGCCTT 58.187 36.000 0.00 0.00 0.00 4.35
720 730 6.921857 TCGCACAACTACTATTATTAGCCTTC 59.078 38.462 0.00 0.00 0.00 3.46
721 731 6.924060 CGCACAACTACTATTATTAGCCTTCT 59.076 38.462 0.00 0.00 0.00 2.85
722 732 8.080417 CGCACAACTACTATTATTAGCCTTCTA 58.920 37.037 0.00 0.00 0.00 2.10
723 733 9.413048 GCACAACTACTATTATTAGCCTTCTAG 57.587 37.037 0.00 0.00 0.00 2.43
724 734 9.413048 CACAACTACTATTATTAGCCTTCTAGC 57.587 37.037 0.00 0.00 0.00 3.42
731 741 8.929487 ACTATTATTAGCCTTCTAGCTTTGAGT 58.071 33.333 0.00 0.00 41.41 3.41
734 744 6.800072 ATTAGCCTTCTAGCTTTGAGTACT 57.200 37.500 0.00 0.00 41.41 2.73
735 745 7.899648 ATTAGCCTTCTAGCTTTGAGTACTA 57.100 36.000 0.00 0.00 41.41 1.82
736 746 5.585820 AGCCTTCTAGCTTTGAGTACTAC 57.414 43.478 0.00 0.00 41.41 2.73
737 747 5.265989 AGCCTTCTAGCTTTGAGTACTACT 58.734 41.667 0.00 0.00 41.41 2.57
738 748 6.424883 AGCCTTCTAGCTTTGAGTACTACTA 58.575 40.000 0.00 0.00 41.41 1.82
739 749 6.544564 AGCCTTCTAGCTTTGAGTACTACTAG 59.455 42.308 0.00 3.03 41.41 2.57
771 1070 4.259933 TGTAGGTAAGATGGCCAGAGTA 57.740 45.455 13.05 0.00 0.00 2.59
815 1119 2.097036 TCCATACCATCTTCGTGTCGT 58.903 47.619 0.00 0.00 0.00 4.34
870 1193 2.346766 AACTCACAGATGGTTGCACA 57.653 45.000 0.00 0.00 0.00 4.57
872 1195 0.520404 CTCACAGATGGTTGCACAGC 59.480 55.000 0.00 0.00 0.00 4.40
902 1236 5.578727 GCCTCGACCATAAATAGATGATCAC 59.421 44.000 0.00 0.00 0.00 3.06
903 1237 6.102663 CCTCGACCATAAATAGATGATCACC 58.897 44.000 0.00 0.00 0.00 4.02
904 1238 5.709966 TCGACCATAAATAGATGATCACCG 58.290 41.667 0.00 0.00 0.00 4.94
905 1239 4.327357 CGACCATAAATAGATGATCACCGC 59.673 45.833 0.00 0.00 0.00 5.68
935 1271 0.178873 TAAGCCCCACCCAAGACTCT 60.179 55.000 0.00 0.00 0.00 3.24
990 1332 0.183014 TAGTCCTCCCGATCGAAGCT 59.817 55.000 18.66 9.27 0.00 3.74
1019 1361 2.280592 GGCGTCGTCCAACAAGGT 60.281 61.111 0.00 0.00 39.02 3.50
1368 2491 3.923864 AACGTCTGCGGCCTCACA 61.924 61.111 0.00 0.00 43.45 3.58
1452 2581 2.264124 GCCGTCGGCCTGATATCTA 58.736 57.895 26.23 0.00 44.06 1.98
1453 2582 0.818296 GCCGTCGGCCTGATATCTAT 59.182 55.000 26.23 0.00 44.06 1.98
1454 2583 1.202313 GCCGTCGGCCTGATATCTATC 60.202 57.143 26.23 0.00 44.06 2.08
1455 2584 1.064208 CCGTCGGCCTGATATCTATCG 59.936 57.143 0.00 3.55 35.48 2.92
1492 2630 0.179084 AACCGGCCGTATGATCACTG 60.179 55.000 26.12 6.79 0.00 3.66
1519 2657 1.619526 CGGCTACGCGTGCTTTTACA 61.620 55.000 24.59 0.00 0.00 2.41
1520 2658 0.094730 GGCTACGCGTGCTTTTACAG 59.905 55.000 24.59 9.73 0.00 2.74
1523 2661 2.349155 GCTACGCGTGCTTTTACAGTTT 60.349 45.455 24.59 0.00 0.00 2.66
1524 2662 2.836479 ACGCGTGCTTTTACAGTTTT 57.164 40.000 12.93 0.00 0.00 2.43
1525 2663 3.948196 ACGCGTGCTTTTACAGTTTTA 57.052 38.095 12.93 0.00 0.00 1.52
1526 2664 3.610495 ACGCGTGCTTTTACAGTTTTAC 58.390 40.909 12.93 0.00 0.00 2.01
1527 2665 3.310501 ACGCGTGCTTTTACAGTTTTACT 59.689 39.130 12.93 0.00 0.00 2.24
1528 2666 3.898361 CGCGTGCTTTTACAGTTTTACTC 59.102 43.478 0.00 0.00 0.00 2.59
1540 2678 6.081872 ACAGTTTTACTCTTACGTGTAGCT 57.918 37.500 0.00 0.00 0.00 3.32
1541 2679 7.206981 ACAGTTTTACTCTTACGTGTAGCTA 57.793 36.000 0.00 0.00 0.00 3.32
1601 2742 3.318191 GCAGGTGCAGGAGGAGAT 58.682 61.111 0.00 0.00 41.59 2.75
1631 2772 8.204160 TGAGTAAAATAATGATCGAGACCACAT 58.796 33.333 0.00 0.00 0.00 3.21
1639 2780 0.532573 TCGAGACCACATGAGAAGGC 59.467 55.000 0.00 0.00 0.00 4.35
1640 2781 0.534412 CGAGACCACATGAGAAGGCT 59.466 55.000 0.00 0.00 0.00 4.58
1645 2786 2.501723 GACCACATGAGAAGGCTCCTAA 59.498 50.000 0.00 0.00 40.55 2.69
1681 2822 2.268167 ATCAGCTGCAGCCCCTCTTC 62.268 60.000 34.39 5.26 43.38 2.87
1685 2826 1.222936 CTGCAGCCCCTCTTCGAAT 59.777 57.895 0.00 0.00 0.00 3.34
1693 2834 2.880167 GCCCCTCTTCGAATTGGAAGTT 60.880 50.000 24.14 0.00 43.10 2.66
1696 2837 4.072131 CCCTCTTCGAATTGGAAGTTGAA 58.928 43.478 24.14 8.96 43.10 2.69
1701 2842 5.470098 TCTTCGAATTGGAAGTTGAAGAAGG 59.530 40.000 24.14 2.24 45.37 3.46
1711 2852 3.535561 AGTTGAAGAAGGATGCATACGG 58.464 45.455 2.46 0.00 0.00 4.02
1789 2930 5.373222 TGGAACGGATACAAATAGGAATGG 58.627 41.667 0.00 0.00 0.00 3.16
1797 2938 7.415541 CGGATACAAATAGGAATGGCATTATGG 60.416 40.741 13.65 2.80 0.00 2.74
1826 2967 4.051922 GTGGCTACAGATGTATGTACAGC 58.948 47.826 0.33 0.36 42.54 4.40
1847 2988 2.586900 GTCTCTCTCCGCGCATATAAC 58.413 52.381 8.75 0.00 0.00 1.89
1909 3050 7.906611 TGTGACTCAATCAAACATAAAAACG 57.093 32.000 0.00 0.00 39.72 3.60
1910 3051 7.698628 TGTGACTCAATCAAACATAAAAACGA 58.301 30.769 0.00 0.00 39.72 3.85
1911 3052 8.184848 TGTGACTCAATCAAACATAAAAACGAA 58.815 29.630 0.00 0.00 39.72 3.85
1912 3053 9.015577 GTGACTCAATCAAACATAAAAACGAAA 57.984 29.630 0.00 0.00 39.72 3.46
1913 3054 9.574458 TGACTCAATCAAACATAAAAACGAAAA 57.426 25.926 0.00 0.00 33.02 2.29
1937 3078 2.746279 AAAATACCCGCATGGATCCA 57.254 45.000 18.88 18.88 37.49 3.41
1941 3082 4.962836 CCCGCATGGATCCAGGGC 62.963 72.222 26.71 25.41 37.49 5.19
1945 3086 2.124193 CATGGATCCAGGGCGCAA 60.124 61.111 21.33 0.00 0.00 4.85
1947 3088 1.529948 ATGGATCCAGGGCGCAATG 60.530 57.895 21.33 6.96 0.00 2.82
1969 3110 2.099638 TCATCGTCGACGCTTCCG 59.900 61.111 32.19 17.35 39.60 4.30
1987 3128 1.754803 CCGACATGGCTTCTACCTACA 59.245 52.381 0.00 0.00 0.00 2.74
1988 3129 2.223829 CCGACATGGCTTCTACCTACAG 60.224 54.545 0.00 0.00 0.00 2.74
2025 3166 0.112412 ACCCACTTGCCGATCCTTTT 59.888 50.000 0.00 0.00 0.00 2.27
2026 3167 1.256812 CCCACTTGCCGATCCTTTTT 58.743 50.000 0.00 0.00 0.00 1.94
2027 3168 2.224917 ACCCACTTGCCGATCCTTTTTA 60.225 45.455 0.00 0.00 0.00 1.52
2028 3169 2.423538 CCCACTTGCCGATCCTTTTTAG 59.576 50.000 0.00 0.00 0.00 1.85
2071 3212 6.013379 ACCTTGATTCAATCAGGTCTTCAGTA 60.013 38.462 13.06 0.00 40.94 2.74
2076 3217 4.160329 TCAATCAGGTCTTCAGTAGTGGT 58.840 43.478 0.00 0.00 0.00 4.16
2080 3221 1.887198 AGGTCTTCAGTAGTGGTCGTG 59.113 52.381 0.00 0.00 0.00 4.35
2116 3257 2.044793 TTCCCATCCTCTCTTGTGGT 57.955 50.000 0.00 0.00 0.00 4.16
2119 3260 1.457346 CCATCCTCTCTTGTGGTTGC 58.543 55.000 0.00 0.00 0.00 4.17
2134 3275 3.498777 GTGGTTGCTGTTTTCTCTCCTAC 59.501 47.826 0.00 0.00 0.00 3.18
2151 3292 9.883293 TCTCTCCTACCTATCAATGAAAAGATA 57.117 33.333 0.00 0.00 0.00 1.98
2229 3370 1.484444 AAGGACAGTCCCCTCACTGC 61.484 60.000 16.72 0.00 46.81 4.40
2254 3395 3.849911 TGACTTCAGCACTATTTCTCGG 58.150 45.455 0.00 0.00 0.00 4.63
2307 3448 4.616835 GCTTTAGCTAACAAACTGCAGCAT 60.617 41.667 15.27 0.00 38.21 3.79
2313 3454 3.293311 AACAAACTGCAGCATGTCATC 57.707 42.857 21.21 0.00 39.31 2.92
2325 3466 2.871022 GCATGTCATCCTCAAGCTAGTG 59.129 50.000 0.00 0.00 0.00 2.74
2374 3515 0.899720 TGGGACTACTAAGGGTTGCG 59.100 55.000 0.00 0.00 0.00 4.85
2398 3539 5.652452 GTGGCCTAGACCTTTGAATATTTGT 59.348 40.000 3.32 0.00 0.00 2.83
2399 3540 6.826741 GTGGCCTAGACCTTTGAATATTTGTA 59.173 38.462 3.32 0.00 0.00 2.41
2400 3541 7.502561 GTGGCCTAGACCTTTGAATATTTGTAT 59.497 37.037 3.32 0.00 0.00 2.29
2401 3542 8.719596 TGGCCTAGACCTTTGAATATTTGTATA 58.280 33.333 3.32 0.00 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.931969 CGCATCTTACTCACATTCAGCA 59.068 45.455 0.00 0.00 0.00 4.41
2 3 4.032217 GTGTCGCATCTTACTCACATTCAG 59.968 45.833 0.00 0.00 0.00 3.02
3 4 3.926527 GTGTCGCATCTTACTCACATTCA 59.073 43.478 0.00 0.00 0.00 2.57
4 5 3.926527 TGTGTCGCATCTTACTCACATTC 59.073 43.478 0.00 0.00 32.19 2.67
5 6 3.925379 TGTGTCGCATCTTACTCACATT 58.075 40.909 0.00 0.00 32.19 2.71
6 7 3.592898 TGTGTCGCATCTTACTCACAT 57.407 42.857 0.00 0.00 32.19 3.21
7 8 3.317150 CTTGTGTCGCATCTTACTCACA 58.683 45.455 0.00 0.00 34.69 3.58
8 9 2.668457 CCTTGTGTCGCATCTTACTCAC 59.332 50.000 0.00 0.00 0.00 3.51
9 10 2.560981 TCCTTGTGTCGCATCTTACTCA 59.439 45.455 0.00 0.00 0.00 3.41
10 11 3.232213 TCCTTGTGTCGCATCTTACTC 57.768 47.619 0.00 0.00 0.00 2.59
11 12 3.326747 GTTCCTTGTGTCGCATCTTACT 58.673 45.455 0.00 0.00 0.00 2.24
12 13 2.415512 GGTTCCTTGTGTCGCATCTTAC 59.584 50.000 0.00 0.00 0.00 2.34
13 14 2.037902 TGGTTCCTTGTGTCGCATCTTA 59.962 45.455 0.00 0.00 0.00 2.10
14 15 1.202758 TGGTTCCTTGTGTCGCATCTT 60.203 47.619 0.00 0.00 0.00 2.40
15 16 0.396435 TGGTTCCTTGTGTCGCATCT 59.604 50.000 0.00 0.00 0.00 2.90
16 17 1.234821 TTGGTTCCTTGTGTCGCATC 58.765 50.000 0.00 0.00 0.00 3.91
17 18 1.336755 GTTTGGTTCCTTGTGTCGCAT 59.663 47.619 0.00 0.00 0.00 4.73
18 19 0.736053 GTTTGGTTCCTTGTGTCGCA 59.264 50.000 0.00 0.00 0.00 5.10
19 20 0.736053 TGTTTGGTTCCTTGTGTCGC 59.264 50.000 0.00 0.00 0.00 5.19
20 21 1.267832 CGTGTTTGGTTCCTTGTGTCG 60.268 52.381 0.00 0.00 0.00 4.35
21 22 1.533129 GCGTGTTTGGTTCCTTGTGTC 60.533 52.381 0.00 0.00 0.00 3.67
22 23 0.454196 GCGTGTTTGGTTCCTTGTGT 59.546 50.000 0.00 0.00 0.00 3.72
23 24 0.738389 AGCGTGTTTGGTTCCTTGTG 59.262 50.000 0.00 0.00 0.00 3.33
24 25 1.021968 GAGCGTGTTTGGTTCCTTGT 58.978 50.000 0.00 0.00 0.00 3.16
25 26 1.308998 AGAGCGTGTTTGGTTCCTTG 58.691 50.000 0.00 0.00 0.00 3.61
26 27 2.052782 AAGAGCGTGTTTGGTTCCTT 57.947 45.000 0.00 0.00 0.00 3.36
27 28 2.104281 ACTAAGAGCGTGTTTGGTTCCT 59.896 45.455 0.00 0.00 0.00 3.36
28 29 2.490991 ACTAAGAGCGTGTTTGGTTCC 58.509 47.619 0.00 0.00 0.00 3.62
29 30 5.857822 AATACTAAGAGCGTGTTTGGTTC 57.142 39.130 0.00 0.00 0.00 3.62
30 31 6.628919 AAAATACTAAGAGCGTGTTTGGTT 57.371 33.333 0.00 0.00 0.00 3.67
31 32 6.148315 GGTAAAATACTAAGAGCGTGTTTGGT 59.852 38.462 0.00 0.00 0.00 3.67
32 33 6.540205 GGTAAAATACTAAGAGCGTGTTTGG 58.460 40.000 0.00 0.00 0.00 3.28
33 34 6.238508 CGGTAAAATACTAAGAGCGTGTTTG 58.761 40.000 0.00 0.00 0.00 2.93
34 35 5.349543 CCGGTAAAATACTAAGAGCGTGTTT 59.650 40.000 0.00 0.00 0.00 2.83
35 36 4.866486 CCGGTAAAATACTAAGAGCGTGTT 59.134 41.667 0.00 0.00 0.00 3.32
36 37 4.427312 CCGGTAAAATACTAAGAGCGTGT 58.573 43.478 0.00 0.00 0.00 4.49
37 38 3.800506 CCCGGTAAAATACTAAGAGCGTG 59.199 47.826 0.00 0.00 0.00 5.34
38 39 3.181472 CCCCGGTAAAATACTAAGAGCGT 60.181 47.826 0.00 0.00 0.00 5.07
39 40 3.387397 CCCCGGTAAAATACTAAGAGCG 58.613 50.000 0.00 0.00 0.00 5.03
40 41 3.136763 GCCCCGGTAAAATACTAAGAGC 58.863 50.000 0.00 0.00 0.00 4.09
41 42 4.411256 TGCCCCGGTAAAATACTAAGAG 57.589 45.455 0.00 0.00 0.00 2.85
42 43 4.840716 TTGCCCCGGTAAAATACTAAGA 57.159 40.909 0.00 0.00 0.00 2.10
43 44 5.374071 AGATTGCCCCGGTAAAATACTAAG 58.626 41.667 0.00 0.00 0.00 2.18
44 45 5.376756 AGATTGCCCCGGTAAAATACTAA 57.623 39.130 0.00 0.00 0.00 2.24
45 46 5.104444 TCAAGATTGCCCCGGTAAAATACTA 60.104 40.000 0.00 0.00 0.00 1.82
46 47 3.945640 AGATTGCCCCGGTAAAATACT 57.054 42.857 0.00 0.00 0.00 2.12
47 48 3.949113 TCAAGATTGCCCCGGTAAAATAC 59.051 43.478 0.00 0.00 0.00 1.89
48 49 4.204012 CTCAAGATTGCCCCGGTAAAATA 58.796 43.478 0.00 0.00 0.00 1.40
49 50 3.023832 CTCAAGATTGCCCCGGTAAAAT 58.976 45.455 0.00 0.00 0.00 1.82
50 51 2.442413 CTCAAGATTGCCCCGGTAAAA 58.558 47.619 0.00 0.00 0.00 1.52
51 52 1.953311 GCTCAAGATTGCCCCGGTAAA 60.953 52.381 0.00 0.00 0.00 2.01
52 53 0.393808 GCTCAAGATTGCCCCGGTAA 60.394 55.000 0.00 0.00 0.00 2.85
53 54 1.223487 GCTCAAGATTGCCCCGGTA 59.777 57.895 0.00 0.00 0.00 4.02
54 55 1.271840 TAGCTCAAGATTGCCCCGGT 61.272 55.000 0.00 0.00 0.00 5.28
55 56 0.107214 TTAGCTCAAGATTGCCCCGG 60.107 55.000 0.00 0.00 0.00 5.73
56 57 1.750193 TTTAGCTCAAGATTGCCCCG 58.250 50.000 0.00 0.00 0.00 5.73
57 58 2.166459 GGTTTTAGCTCAAGATTGCCCC 59.834 50.000 0.00 0.00 0.00 5.80
58 59 2.825532 TGGTTTTAGCTCAAGATTGCCC 59.174 45.455 0.00 0.00 0.00 5.36
59 60 4.519540 TTGGTTTTAGCTCAAGATTGCC 57.480 40.909 0.00 0.00 0.00 4.52
60 61 4.386954 GCTTTGGTTTTAGCTCAAGATTGC 59.613 41.667 0.00 0.00 34.57 3.56
61 62 4.618489 CGCTTTGGTTTTAGCTCAAGATTG 59.382 41.667 0.00 0.00 35.25 2.67
62 63 4.798574 CGCTTTGGTTTTAGCTCAAGATT 58.201 39.130 0.00 0.00 35.25 2.40
63 64 3.366374 GCGCTTTGGTTTTAGCTCAAGAT 60.366 43.478 0.00 0.00 35.25 2.40
64 65 2.031157 GCGCTTTGGTTTTAGCTCAAGA 60.031 45.455 0.00 0.00 35.25 3.02
65 66 2.287547 TGCGCTTTGGTTTTAGCTCAAG 60.288 45.455 9.73 0.00 35.25 3.02
66 67 1.678627 TGCGCTTTGGTTTTAGCTCAA 59.321 42.857 9.73 0.00 35.25 3.02
67 68 1.313772 TGCGCTTTGGTTTTAGCTCA 58.686 45.000 9.73 0.00 35.25 4.26
68 69 2.253603 CATGCGCTTTGGTTTTAGCTC 58.746 47.619 9.73 0.00 35.25 4.09
69 70 1.669795 GCATGCGCTTTGGTTTTAGCT 60.670 47.619 9.73 0.00 35.25 3.32
70 71 0.715551 GCATGCGCTTTGGTTTTAGC 59.284 50.000 9.73 0.00 34.30 3.09
71 72 1.349234 GGCATGCGCTTTGGTTTTAG 58.651 50.000 12.44 0.00 38.60 1.85
72 73 0.037790 GGGCATGCGCTTTGGTTTTA 60.038 50.000 26.07 0.00 38.60 1.52
73 74 1.301637 GGGCATGCGCTTTGGTTTT 60.302 52.632 26.07 0.00 38.60 2.43
74 75 2.037620 TTGGGCATGCGCTTTGGTTT 62.038 50.000 31.56 0.00 38.60 3.27
75 76 2.506061 TTGGGCATGCGCTTTGGTT 61.506 52.632 31.56 0.00 38.60 3.67
76 77 2.916703 TTGGGCATGCGCTTTGGT 60.917 55.556 31.56 0.00 38.60 3.67
77 78 2.432972 GTTGGGCATGCGCTTTGG 60.433 61.111 31.56 0.00 38.60 3.28
78 79 2.432972 GGTTGGGCATGCGCTTTG 60.433 61.111 31.56 7.83 38.60 2.77
79 80 2.916703 TGGTTGGGCATGCGCTTT 60.917 55.556 31.56 0.00 38.60 3.51
80 81 3.376078 CTGGTTGGGCATGCGCTT 61.376 61.111 31.56 0.00 38.60 4.68
83 84 3.751246 CACCTGGTTGGGCATGCG 61.751 66.667 12.44 0.00 41.11 4.73
84 85 1.907807 TTCACCTGGTTGGGCATGC 60.908 57.895 9.90 9.90 41.11 4.06
85 86 0.540365 AGTTCACCTGGTTGGGCATG 60.540 55.000 0.00 0.00 41.11 4.06
86 87 0.540365 CAGTTCACCTGGTTGGGCAT 60.540 55.000 0.00 0.00 41.11 4.40
87 88 1.152777 CAGTTCACCTGGTTGGGCA 60.153 57.895 0.00 0.00 41.11 5.36
88 89 3.763671 CAGTTCACCTGGTTGGGC 58.236 61.111 0.00 0.00 41.11 5.36
96 97 1.064758 TGCACAGAAACCAGTTCACCT 60.065 47.619 0.00 0.00 38.86 4.00
115 118 0.461163 TCGATGGTATGGTGCCGTTG 60.461 55.000 0.00 0.00 0.00 4.10
116 119 0.468226 ATCGATGGTATGGTGCCGTT 59.532 50.000 0.00 0.00 0.00 4.44
117 120 0.033504 GATCGATGGTATGGTGCCGT 59.966 55.000 0.54 0.00 0.00 5.68
118 121 0.033366 TGATCGATGGTATGGTGCCG 59.967 55.000 0.54 0.00 0.00 5.69
119 122 2.289631 TGATGATCGATGGTATGGTGCC 60.290 50.000 0.54 0.00 0.00 5.01
120 123 2.738846 GTGATGATCGATGGTATGGTGC 59.261 50.000 0.54 0.00 0.00 5.01
121 124 4.263018 AGTGATGATCGATGGTATGGTG 57.737 45.455 0.54 0.00 0.00 4.17
122 125 4.101585 ACAAGTGATGATCGATGGTATGGT 59.898 41.667 0.54 0.00 0.00 3.55
123 126 4.635223 ACAAGTGATGATCGATGGTATGG 58.365 43.478 0.54 0.00 0.00 2.74
125 128 5.302823 TGAGACAAGTGATGATCGATGGTAT 59.697 40.000 0.54 0.00 0.00 2.73
126 129 4.644685 TGAGACAAGTGATGATCGATGGTA 59.355 41.667 0.54 0.00 0.00 3.25
153 158 1.077005 TCAAGGGATTGTTTCAGGGGG 59.923 52.381 0.00 0.00 0.00 5.40
158 163 3.703556 TGCTGTTTCAAGGGATTGTTTCA 59.296 39.130 0.00 0.00 0.00 2.69
159 164 4.320608 TGCTGTTTCAAGGGATTGTTTC 57.679 40.909 0.00 0.00 0.00 2.78
189 194 1.067142 AGAGAGAAAATGCACGCGGTA 60.067 47.619 12.47 0.00 0.00 4.02
215 225 8.441312 AAAACATATGTGTACGGGTAAATAGG 57.559 34.615 9.63 0.00 37.67 2.57
253 263 7.928908 TTAATCGATGAGGCAAATATTTTGC 57.071 32.000 14.88 14.88 44.22 3.68
260 270 9.342308 TCTTCTTAATTAATCGATGAGGCAAAT 57.658 29.630 0.00 0.00 0.00 2.32
261 271 8.731275 TCTTCTTAATTAATCGATGAGGCAAA 57.269 30.769 0.00 0.00 0.00 3.68
262 272 8.731275 TTCTTCTTAATTAATCGATGAGGCAA 57.269 30.769 0.00 0.00 0.00 4.52
263 273 8.204160 TCTTCTTCTTAATTAATCGATGAGGCA 58.796 33.333 0.00 0.00 0.00 4.75
264 274 8.594881 TCTTCTTCTTAATTAATCGATGAGGC 57.405 34.615 0.00 0.00 0.00 4.70
265 275 9.973450 TCTCTTCTTCTTAATTAATCGATGAGG 57.027 33.333 19.96 13.97 0.00 3.86
271 281 9.657121 GGCAATTCTCTTCTTCTTAATTAATCG 57.343 33.333 0.00 0.00 0.00 3.34
272 282 9.958234 GGGCAATTCTCTTCTTCTTAATTAATC 57.042 33.333 0.00 0.00 0.00 1.75
273 283 9.479549 TGGGCAATTCTCTTCTTCTTAATTAAT 57.520 29.630 0.00 0.00 0.00 1.40
274 284 8.877864 TGGGCAATTCTCTTCTTCTTAATTAA 57.122 30.769 0.00 0.00 0.00 1.40
275 285 8.109634 ACTGGGCAATTCTCTTCTTCTTAATTA 58.890 33.333 0.00 0.00 0.00 1.40
276 286 6.950619 ACTGGGCAATTCTCTTCTTCTTAATT 59.049 34.615 0.00 0.00 0.00 1.40
277 287 6.488715 ACTGGGCAATTCTCTTCTTCTTAAT 58.511 36.000 0.00 0.00 0.00 1.40
278 288 5.880901 ACTGGGCAATTCTCTTCTTCTTAA 58.119 37.500 0.00 0.00 0.00 1.85
279 289 5.505181 ACTGGGCAATTCTCTTCTTCTTA 57.495 39.130 0.00 0.00 0.00 2.10
280 290 4.379302 ACTGGGCAATTCTCTTCTTCTT 57.621 40.909 0.00 0.00 0.00 2.52
281 291 4.379302 AACTGGGCAATTCTCTTCTTCT 57.621 40.909 0.00 0.00 0.00 2.85
282 292 6.765915 ATTAACTGGGCAATTCTCTTCTTC 57.234 37.500 0.00 0.00 0.00 2.87
283 293 7.544804 AAATTAACTGGGCAATTCTCTTCTT 57.455 32.000 0.00 0.00 0.00 2.52
284 294 7.544804 AAAATTAACTGGGCAATTCTCTTCT 57.455 32.000 0.00 0.00 0.00 2.85
285 295 9.358872 CTAAAAATTAACTGGGCAATTCTCTTC 57.641 33.333 0.00 0.00 0.00 2.87
286 296 9.088987 TCTAAAAATTAACTGGGCAATTCTCTT 57.911 29.630 0.00 0.00 0.00 2.85
287 297 8.650143 TCTAAAAATTAACTGGGCAATTCTCT 57.350 30.769 0.00 0.00 0.00 3.10
288 298 9.705290 TTTCTAAAAATTAACTGGGCAATTCTC 57.295 29.630 0.00 0.00 0.00 2.87
291 301 9.062524 GGTTTTCTAAAAATTAACTGGGCAATT 57.937 29.630 0.00 0.00 0.00 2.32
292 302 8.214364 TGGTTTTCTAAAAATTAACTGGGCAAT 58.786 29.630 0.00 0.00 0.00 3.56
293 303 7.565680 TGGTTTTCTAAAAATTAACTGGGCAA 58.434 30.769 0.00 0.00 0.00 4.52
294 304 7.070074 TCTGGTTTTCTAAAAATTAACTGGGCA 59.930 33.333 0.00 0.00 0.00 5.36
295 305 7.384115 GTCTGGTTTTCTAAAAATTAACTGGGC 59.616 37.037 0.00 0.00 0.00 5.36
296 306 7.593644 CGTCTGGTTTTCTAAAAATTAACTGGG 59.406 37.037 0.00 0.00 0.00 4.45
297 307 8.347035 TCGTCTGGTTTTCTAAAAATTAACTGG 58.653 33.333 0.00 0.00 0.00 4.00
298 308 9.724839 TTCGTCTGGTTTTCTAAAAATTAACTG 57.275 29.630 0.00 0.00 0.00 3.16
302 312 9.518906 GGTTTTCGTCTGGTTTTCTAAAAATTA 57.481 29.630 0.00 0.00 0.00 1.40
303 313 7.221259 CGGTTTTCGTCTGGTTTTCTAAAAATT 59.779 33.333 0.00 0.00 0.00 1.82
304 314 6.693978 CGGTTTTCGTCTGGTTTTCTAAAAAT 59.306 34.615 0.00 0.00 0.00 1.82
305 315 6.028987 CGGTTTTCGTCTGGTTTTCTAAAAA 58.971 36.000 0.00 0.00 0.00 1.94
306 316 5.571277 CGGTTTTCGTCTGGTTTTCTAAAA 58.429 37.500 0.00 0.00 0.00 1.52
307 317 5.159399 CGGTTTTCGTCTGGTTTTCTAAA 57.841 39.130 0.00 0.00 0.00 1.85
308 318 4.799419 CGGTTTTCGTCTGGTTTTCTAA 57.201 40.909 0.00 0.00 0.00 2.10
321 331 3.242478 TGAGTTGCTTGTAACGGTTTTCG 60.242 43.478 0.00 0.00 45.88 3.46
322 332 4.281525 TGAGTTGCTTGTAACGGTTTTC 57.718 40.909 0.00 0.00 35.73 2.29
323 333 4.705337 TTGAGTTGCTTGTAACGGTTTT 57.295 36.364 0.00 0.00 35.73 2.43
324 334 4.439563 CCTTTGAGTTGCTTGTAACGGTTT 60.440 41.667 0.00 0.00 35.73 3.27
325 335 3.066203 CCTTTGAGTTGCTTGTAACGGTT 59.934 43.478 0.00 0.00 35.73 4.44
326 336 2.616842 CCTTTGAGTTGCTTGTAACGGT 59.383 45.455 0.00 0.00 35.73 4.83
327 337 2.604614 GCCTTTGAGTTGCTTGTAACGG 60.605 50.000 0.00 0.00 35.73 4.44
328 338 2.650608 GCCTTTGAGTTGCTTGTAACG 58.349 47.619 0.00 0.00 35.73 3.18
329 339 2.032924 ACGCCTTTGAGTTGCTTGTAAC 59.967 45.455 0.00 0.00 0.00 2.50
330 340 2.294074 ACGCCTTTGAGTTGCTTGTAA 58.706 42.857 0.00 0.00 0.00 2.41
331 341 1.961793 ACGCCTTTGAGTTGCTTGTA 58.038 45.000 0.00 0.00 0.00 2.41
332 342 1.602377 GTACGCCTTTGAGTTGCTTGT 59.398 47.619 0.00 0.00 0.00 3.16
333 343 1.873591 AGTACGCCTTTGAGTTGCTTG 59.126 47.619 0.00 0.00 0.00 4.01
334 344 2.256117 AGTACGCCTTTGAGTTGCTT 57.744 45.000 0.00 0.00 0.00 3.91
335 345 2.299297 AGTAGTACGCCTTTGAGTTGCT 59.701 45.455 0.00 0.00 0.00 3.91
336 346 2.666994 GAGTAGTACGCCTTTGAGTTGC 59.333 50.000 0.00 0.00 0.00 4.17
337 347 3.673809 GTGAGTAGTACGCCTTTGAGTTG 59.326 47.826 1.30 0.00 0.00 3.16
338 348 3.319972 TGTGAGTAGTACGCCTTTGAGTT 59.680 43.478 1.30 0.00 0.00 3.01
339 349 2.889045 TGTGAGTAGTACGCCTTTGAGT 59.111 45.455 1.30 0.00 0.00 3.41
340 350 3.243336 GTGTGAGTAGTACGCCTTTGAG 58.757 50.000 1.30 0.00 0.00 3.02
341 351 2.624364 TGTGTGAGTAGTACGCCTTTGA 59.376 45.455 1.30 0.00 0.00 2.69
342 352 3.021269 TGTGTGAGTAGTACGCCTTTG 57.979 47.619 1.30 0.00 0.00 2.77
343 353 3.181473 TGTTGTGTGAGTAGTACGCCTTT 60.181 43.478 1.30 0.00 0.00 3.11
344 354 2.363038 TGTTGTGTGAGTAGTACGCCTT 59.637 45.455 1.30 0.00 0.00 4.35
345 355 1.958579 TGTTGTGTGAGTAGTACGCCT 59.041 47.619 1.30 0.00 0.00 5.52
346 356 2.427232 TGTTGTGTGAGTAGTACGCC 57.573 50.000 1.30 0.00 0.00 5.68
347 357 3.117794 TGTTGTTGTGTGAGTAGTACGC 58.882 45.455 0.00 0.00 0.00 4.42
348 358 4.743151 ACATGTTGTTGTGTGAGTAGTACG 59.257 41.667 0.00 0.00 0.00 3.67
349 359 5.176958 GGACATGTTGTTGTGTGAGTAGTAC 59.823 44.000 0.00 0.00 0.00 2.73
350 360 5.294356 GGACATGTTGTTGTGTGAGTAGTA 58.706 41.667 0.00 0.00 0.00 1.82
351 361 4.127171 GGACATGTTGTTGTGTGAGTAGT 58.873 43.478 0.00 0.00 0.00 2.73
352 362 3.184379 CGGACATGTTGTTGTGTGAGTAG 59.816 47.826 0.00 0.00 0.00 2.57
353 363 3.127589 CGGACATGTTGTTGTGTGAGTA 58.872 45.455 0.00 0.00 0.00 2.59
354 364 1.939934 CGGACATGTTGTTGTGTGAGT 59.060 47.619 0.00 0.00 0.00 3.41
355 365 1.939934 ACGGACATGTTGTTGTGTGAG 59.060 47.619 0.00 0.00 0.00 3.51
356 366 2.031258 ACGGACATGTTGTTGTGTGA 57.969 45.000 0.00 0.00 0.00 3.58
357 367 2.609916 TGTACGGACATGTTGTTGTGTG 59.390 45.455 0.00 0.00 0.00 3.82
358 368 2.907634 TGTACGGACATGTTGTTGTGT 58.092 42.857 0.00 0.00 0.00 3.72
359 369 3.953874 TTGTACGGACATGTTGTTGTG 57.046 42.857 0.00 0.00 34.86 3.33
360 370 3.690139 TGTTTGTACGGACATGTTGTTGT 59.310 39.130 0.00 0.00 34.86 3.32
361 371 4.280101 TGTTTGTACGGACATGTTGTTG 57.720 40.909 0.00 0.00 34.86 3.33
362 372 5.508200 AATGTTTGTACGGACATGTTGTT 57.492 34.783 0.00 0.00 36.65 2.83
363 373 5.992829 TCTAATGTTTGTACGGACATGTTGT 59.007 36.000 0.00 4.78 36.65 3.32
364 374 6.304126 GTCTAATGTTTGTACGGACATGTTG 58.696 40.000 0.00 0.00 36.65 3.33
365 375 5.410439 GGTCTAATGTTTGTACGGACATGTT 59.590 40.000 0.00 0.00 36.65 2.71
366 376 4.933400 GGTCTAATGTTTGTACGGACATGT 59.067 41.667 0.00 0.00 36.65 3.21
367 377 4.032445 CGGTCTAATGTTTGTACGGACATG 59.968 45.833 0.00 0.00 36.65 3.21
368 378 4.082081 TCGGTCTAATGTTTGTACGGACAT 60.082 41.667 0.00 7.81 38.08 3.06
369 379 3.255395 TCGGTCTAATGTTTGTACGGACA 59.745 43.478 0.00 0.00 0.00 4.02
370 380 3.836949 TCGGTCTAATGTTTGTACGGAC 58.163 45.455 0.00 0.00 0.00 4.79
371 381 4.724074 ATCGGTCTAATGTTTGTACGGA 57.276 40.909 0.00 0.00 0.00 4.69
372 382 5.789710 AAATCGGTCTAATGTTTGTACGG 57.210 39.130 0.00 0.00 0.00 4.02
452 462 6.545666 ACCACTCATGCCGAATAATGAAATTA 59.454 34.615 0.00 0.00 44.01 1.40
453 463 5.360714 ACCACTCATGCCGAATAATGAAATT 59.639 36.000 0.00 0.00 41.28 1.82
454 464 4.889409 ACCACTCATGCCGAATAATGAAAT 59.111 37.500 0.00 0.00 32.60 2.17
455 465 4.096231 CACCACTCATGCCGAATAATGAAA 59.904 41.667 0.00 0.00 32.60 2.69
456 466 3.627123 CACCACTCATGCCGAATAATGAA 59.373 43.478 0.00 0.00 32.60 2.57
457 467 3.118445 TCACCACTCATGCCGAATAATGA 60.118 43.478 0.00 0.00 0.00 2.57
458 468 3.205338 TCACCACTCATGCCGAATAATG 58.795 45.455 0.00 0.00 0.00 1.90
459 469 3.470709 CTCACCACTCATGCCGAATAAT 58.529 45.455 0.00 0.00 0.00 1.28
460 470 2.905075 CTCACCACTCATGCCGAATAA 58.095 47.619 0.00 0.00 0.00 1.40
461 471 1.473257 GCTCACCACTCATGCCGAATA 60.473 52.381 0.00 0.00 0.00 1.75
462 472 0.745845 GCTCACCACTCATGCCGAAT 60.746 55.000 0.00 0.00 0.00 3.34
463 473 1.375908 GCTCACCACTCATGCCGAA 60.376 57.895 0.00 0.00 0.00 4.30
464 474 0.970427 TAGCTCACCACTCATGCCGA 60.970 55.000 0.00 0.00 0.00 5.54
465 475 0.105593 ATAGCTCACCACTCATGCCG 59.894 55.000 0.00 0.00 0.00 5.69
466 476 1.415659 AGATAGCTCACCACTCATGCC 59.584 52.381 0.00 0.00 0.00 4.40
467 477 2.102084 TGAGATAGCTCACCACTCATGC 59.898 50.000 6.59 0.00 45.88 4.06
478 488 8.089115 ACTGTAGTTTGTTTTTGAGATAGCTC 57.911 34.615 0.00 0.00 41.67 4.09
479 489 9.555727 TTACTGTAGTTTGTTTTTGAGATAGCT 57.444 29.630 0.00 0.00 0.00 3.32
513 523 7.723289 AAAATATCTTTTCGTGCGTATCAGACG 60.723 37.037 0.00 0.00 41.41 4.18
514 524 6.512177 AATATCTTTTCGTGCGTATCAGAC 57.488 37.500 0.00 0.00 0.00 3.51
515 525 7.534085 AAAATATCTTTTCGTGCGTATCAGA 57.466 32.000 0.00 0.00 28.20 3.27
516 526 9.697250 TTAAAAATATCTTTTCGTGCGTATCAG 57.303 29.630 0.00 0.00 33.44 2.90
517 527 9.697250 CTTAAAAATATCTTTTCGTGCGTATCA 57.303 29.630 0.00 0.00 33.44 2.15
518 528 8.670668 GCTTAAAAATATCTTTTCGTGCGTATC 58.329 33.333 0.00 0.00 33.44 2.24
519 529 8.395633 AGCTTAAAAATATCTTTTCGTGCGTAT 58.604 29.630 0.00 0.00 33.44 3.06
520 530 7.745015 AGCTTAAAAATATCTTTTCGTGCGTA 58.255 30.769 0.00 0.00 33.44 4.42
521 531 6.608610 AGCTTAAAAATATCTTTTCGTGCGT 58.391 32.000 0.00 0.00 33.44 5.24
522 532 6.076607 CGAGCTTAAAAATATCTTTTCGTGCG 60.077 38.462 0.00 0.00 33.44 5.34
523 533 6.194692 CCGAGCTTAAAAATATCTTTTCGTGC 59.805 38.462 0.00 0.00 33.44 5.34
524 534 7.241376 ACCGAGCTTAAAAATATCTTTTCGTG 58.759 34.615 0.00 0.00 33.44 4.35
525 535 7.373778 ACCGAGCTTAAAAATATCTTTTCGT 57.626 32.000 0.00 0.00 33.44 3.85
526 536 8.669394 AAACCGAGCTTAAAAATATCTTTTCG 57.331 30.769 0.00 0.00 33.44 3.46
530 540 9.836076 GTTGTAAACCGAGCTTAAAAATATCTT 57.164 29.630 0.00 0.00 42.21 2.40
549 559 5.266733 AGTTCTGGACACGTAGTTGTAAA 57.733 39.130 0.00 0.00 41.61 2.01
550 560 4.261741 GGAGTTCTGGACACGTAGTTGTAA 60.262 45.833 0.00 0.00 41.61 2.41
551 561 3.254166 GGAGTTCTGGACACGTAGTTGTA 59.746 47.826 0.00 0.00 41.61 2.41
552 562 2.035576 GGAGTTCTGGACACGTAGTTGT 59.964 50.000 0.00 0.00 41.61 3.32
553 563 2.035449 TGGAGTTCTGGACACGTAGTTG 59.965 50.000 0.00 0.00 41.61 3.16
554 564 2.296471 CTGGAGTTCTGGACACGTAGTT 59.704 50.000 0.00 0.00 41.61 2.24
555 565 3.400921 CCTGGAGTTCTGGACACGTAGT 61.401 54.545 0.00 0.00 37.79 2.73
556 566 1.202582 CCTGGAGTTCTGGACACGTAG 59.797 57.143 0.00 0.00 36.68 3.51
557 567 1.202964 TCCTGGAGTTCTGGACACGTA 60.203 52.381 0.00 0.00 38.38 3.57
558 568 0.469331 TCCTGGAGTTCTGGACACGT 60.469 55.000 0.00 0.00 38.38 4.49
559 569 0.679505 TTCCTGGAGTTCTGGACACG 59.320 55.000 0.00 0.00 42.19 4.49
560 570 2.368875 TCTTTCCTGGAGTTCTGGACAC 59.631 50.000 0.00 0.00 42.19 3.67
561 571 2.689658 TCTTTCCTGGAGTTCTGGACA 58.310 47.619 0.00 0.00 42.19 4.02
562 572 3.771577 TTCTTTCCTGGAGTTCTGGAC 57.228 47.619 0.00 0.00 42.19 4.02
563 573 3.458118 TGTTTCTTTCCTGGAGTTCTGGA 59.542 43.478 0.00 0.00 41.02 3.86
564 574 3.820557 TGTTTCTTTCCTGGAGTTCTGG 58.179 45.455 0.00 0.00 35.98 3.86
565 575 5.835113 TTTGTTTCTTTCCTGGAGTTCTG 57.165 39.130 0.00 0.00 0.00 3.02
566 576 7.423844 AATTTTGTTTCTTTCCTGGAGTTCT 57.576 32.000 0.00 0.00 0.00 3.01
567 577 9.594478 TTTAATTTTGTTTCTTTCCTGGAGTTC 57.406 29.630 0.00 0.00 0.00 3.01
568 578 9.378551 GTTTAATTTTGTTTCTTTCCTGGAGTT 57.621 29.630 0.00 0.00 0.00 3.01
569 579 8.536175 TGTTTAATTTTGTTTCTTTCCTGGAGT 58.464 29.630 0.00 0.00 0.00 3.85
570 580 8.940768 TGTTTAATTTTGTTTCTTTCCTGGAG 57.059 30.769 0.00 0.00 0.00 3.86
571 581 7.494298 GCTGTTTAATTTTGTTTCTTTCCTGGA 59.506 33.333 0.00 0.00 0.00 3.86
572 582 7.279758 TGCTGTTTAATTTTGTTTCTTTCCTGG 59.720 33.333 0.00 0.00 0.00 4.45
573 583 8.195617 TGCTGTTTAATTTTGTTTCTTTCCTG 57.804 30.769 0.00 0.00 0.00 3.86
574 584 8.785329 TTGCTGTTTAATTTTGTTTCTTTCCT 57.215 26.923 0.00 0.00 0.00 3.36
578 588 9.522804 TCGTATTGCTGTTTAATTTTGTTTCTT 57.477 25.926 0.00 0.00 0.00 2.52
579 589 8.964150 GTCGTATTGCTGTTTAATTTTGTTTCT 58.036 29.630 0.00 0.00 0.00 2.52
580 590 8.964150 AGTCGTATTGCTGTTTAATTTTGTTTC 58.036 29.630 0.00 0.00 0.00 2.78
581 591 8.865590 AGTCGTATTGCTGTTTAATTTTGTTT 57.134 26.923 0.00 0.00 0.00 2.83
582 592 7.322699 CGAGTCGTATTGCTGTTTAATTTTGTT 59.677 33.333 3.82 0.00 0.00 2.83
583 593 6.795114 CGAGTCGTATTGCTGTTTAATTTTGT 59.205 34.615 3.82 0.00 0.00 2.83
584 594 6.795114 ACGAGTCGTATTGCTGTTTAATTTTG 59.205 34.615 18.34 0.00 38.73 2.44
585 595 6.795114 CACGAGTCGTATTGCTGTTTAATTTT 59.205 34.615 19.43 0.00 38.32 1.82
586 596 6.073440 ACACGAGTCGTATTGCTGTTTAATTT 60.073 34.615 19.43 0.00 38.32 1.82
587 597 5.407387 ACACGAGTCGTATTGCTGTTTAATT 59.593 36.000 19.43 0.00 38.32 1.40
588 598 4.927425 ACACGAGTCGTATTGCTGTTTAAT 59.073 37.500 19.43 0.00 38.32 1.40
589 599 4.149221 CACACGAGTCGTATTGCTGTTTAA 59.851 41.667 19.43 0.00 38.32 1.52
590 600 3.671459 CACACGAGTCGTATTGCTGTTTA 59.329 43.478 19.43 0.00 38.32 2.01
591 601 2.475111 CACACGAGTCGTATTGCTGTTT 59.525 45.455 19.43 0.00 38.32 2.83
592 602 2.058798 CACACGAGTCGTATTGCTGTT 58.941 47.619 19.43 0.00 38.32 3.16
593 603 1.000607 ACACACGAGTCGTATTGCTGT 60.001 47.619 19.43 8.17 38.32 4.40
594 604 1.386748 CACACACGAGTCGTATTGCTG 59.613 52.381 19.43 13.94 38.32 4.41
595 605 1.000607 ACACACACGAGTCGTATTGCT 60.001 47.619 19.43 6.76 38.32 3.91
596 606 1.124297 CACACACACGAGTCGTATTGC 59.876 52.381 19.43 0.00 38.32 3.56
597 607 1.124297 GCACACACACGAGTCGTATTG 59.876 52.381 19.43 19.62 38.32 1.90
598 608 1.269361 TGCACACACACGAGTCGTATT 60.269 47.619 19.43 5.43 38.32 1.89
599 609 0.312729 TGCACACACACGAGTCGTAT 59.687 50.000 19.43 3.50 38.32 3.06
600 610 0.100861 TTGCACACACACGAGTCGTA 59.899 50.000 19.43 0.00 38.32 3.43
601 611 0.738063 TTTGCACACACACGAGTCGT 60.738 50.000 13.56 13.56 42.36 4.34
602 612 0.371989 TTTTGCACACACACGAGTCG 59.628 50.000 11.85 11.85 0.00 4.18
603 613 2.535934 TTTTTGCACACACACGAGTC 57.464 45.000 0.00 0.00 0.00 3.36
623 633 8.589094 TATCTATGGATCGCATCGTACTTCGAT 61.589 40.741 0.00 7.71 44.39 3.59
624 634 7.343068 TATCTATGGATCGCATCGTACTTCGA 61.343 42.308 0.00 0.00 41.62 3.71
625 635 2.051879 ATGGATCGCATCGTACTTCG 57.948 50.000 0.00 0.00 41.41 3.79
626 636 4.421033 TCTATGGATCGCATCGTACTTC 57.579 45.455 0.59 0.00 0.00 3.01
627 637 6.510879 TTATCTATGGATCGCATCGTACTT 57.489 37.500 0.00 0.00 33.71 2.24
628 638 6.510879 TTTATCTATGGATCGCATCGTACT 57.489 37.500 0.00 0.00 33.71 2.73
629 639 7.576750 TTTTTATCTATGGATCGCATCGTAC 57.423 36.000 0.00 0.00 33.71 3.67
630 640 8.655970 CAATTTTTATCTATGGATCGCATCGTA 58.344 33.333 0.00 0.00 33.71 3.43
631 641 7.521529 CAATTTTTATCTATGGATCGCATCGT 58.478 34.615 0.00 0.00 33.71 3.73
632 642 6.467047 GCAATTTTTATCTATGGATCGCATCG 59.533 38.462 0.00 0.00 33.71 3.84
633 643 7.307694 TGCAATTTTTATCTATGGATCGCATC 58.692 34.615 0.00 0.00 33.71 3.91
634 644 7.218228 TGCAATTTTTATCTATGGATCGCAT 57.782 32.000 0.00 2.80 33.71 4.73
635 645 6.631971 TGCAATTTTTATCTATGGATCGCA 57.368 33.333 0.00 0.00 33.71 5.10
636 646 7.809331 TGAATGCAATTTTTATCTATGGATCGC 59.191 33.333 0.00 0.00 36.07 4.58
637 647 9.850628 ATGAATGCAATTTTTATCTATGGATCG 57.149 29.630 0.00 0.00 36.07 3.69
641 651 8.922676 GCAGATGAATGCAATTTTTATCTATGG 58.077 33.333 5.72 0.00 45.77 2.74
656 666 5.888105 ACATGTTTCTAAGCAGATGAATGC 58.112 37.500 0.00 0.00 46.88 3.56
657 667 6.252869 GCAACATGTTTCTAAGCAGATGAATG 59.747 38.462 8.77 0.00 0.00 2.67
658 668 6.152323 AGCAACATGTTTCTAAGCAGATGAAT 59.848 34.615 9.11 0.00 0.00 2.57
659 669 5.474532 AGCAACATGTTTCTAAGCAGATGAA 59.525 36.000 9.11 0.00 0.00 2.57
660 670 5.005740 AGCAACATGTTTCTAAGCAGATGA 58.994 37.500 9.11 0.00 0.00 2.92
661 671 5.123502 AGAGCAACATGTTTCTAAGCAGATG 59.876 40.000 10.84 0.00 0.00 2.90
662 672 5.251764 AGAGCAACATGTTTCTAAGCAGAT 58.748 37.500 10.84 0.00 0.00 2.90
663 673 4.645535 AGAGCAACATGTTTCTAAGCAGA 58.354 39.130 10.84 0.00 0.00 4.26
664 674 5.409520 TGTAGAGCAACATGTTTCTAAGCAG 59.590 40.000 17.58 3.38 0.00 4.24
665 675 5.304778 TGTAGAGCAACATGTTTCTAAGCA 58.695 37.500 17.58 11.71 0.00 3.91
666 676 5.862924 TGTAGAGCAACATGTTTCTAAGC 57.137 39.130 17.58 13.70 0.00 3.09
667 677 9.926751 CAATATGTAGAGCAACATGTTTCTAAG 57.073 33.333 17.58 5.28 38.62 2.18
668 678 9.448438 ACAATATGTAGAGCAACATGTTTCTAA 57.552 29.630 17.58 10.86 38.62 2.10
669 679 9.448438 AACAATATGTAGAGCAACATGTTTCTA 57.552 29.630 10.84 12.44 38.62 2.10
670 680 7.928307 ACAATATGTAGAGCAACATGTTTCT 57.072 32.000 10.67 10.67 38.62 2.52
671 681 7.426456 CGAACAATATGTAGAGCAACATGTTTC 59.574 37.037 8.77 3.81 38.62 2.78
672 682 7.243487 CGAACAATATGTAGAGCAACATGTTT 58.757 34.615 8.77 0.00 38.62 2.83
673 683 6.675486 GCGAACAATATGTAGAGCAACATGTT 60.675 38.462 4.92 4.92 40.51 2.71
674 684 5.220662 GCGAACAATATGTAGAGCAACATGT 60.221 40.000 8.99 0.00 40.29 3.21
675 685 5.200454 GCGAACAATATGTAGAGCAACATG 58.800 41.667 8.99 0.00 40.29 3.21
676 686 4.875536 TGCGAACAATATGTAGAGCAACAT 59.124 37.500 4.97 4.97 42.62 2.71
677 687 4.092821 GTGCGAACAATATGTAGAGCAACA 59.907 41.667 8.34 0.00 36.47 3.33
678 688 4.092821 TGTGCGAACAATATGTAGAGCAAC 59.907 41.667 0.00 5.43 36.47 4.17
679 689 4.249661 TGTGCGAACAATATGTAGAGCAA 58.750 39.130 0.00 0.51 36.47 3.91
680 690 3.855858 TGTGCGAACAATATGTAGAGCA 58.144 40.909 0.00 4.21 33.88 4.26
681 691 4.330074 AGTTGTGCGAACAATATGTAGAGC 59.670 41.667 13.20 0.00 31.79 4.09
682 692 6.752351 AGTAGTTGTGCGAACAATATGTAGAG 59.248 38.462 13.20 0.00 31.79 2.43
683 693 6.627243 AGTAGTTGTGCGAACAATATGTAGA 58.373 36.000 13.20 0.00 31.79 2.59
684 694 6.887376 AGTAGTTGTGCGAACAATATGTAG 57.113 37.500 13.20 0.00 31.79 2.74
685 695 8.936070 AATAGTAGTTGTGCGAACAATATGTA 57.064 30.769 13.20 3.23 31.79 2.29
686 696 7.843490 AATAGTAGTTGTGCGAACAATATGT 57.157 32.000 13.20 0.92 31.79 2.29
690 700 8.548721 GCTAATAATAGTAGTTGTGCGAACAAT 58.451 33.333 13.20 4.44 31.79 2.71
691 701 7.010738 GGCTAATAATAGTAGTTGTGCGAACAA 59.989 37.037 4.37 4.37 0.00 2.83
692 702 6.477688 GGCTAATAATAGTAGTTGTGCGAACA 59.522 38.462 0.00 0.00 0.00 3.18
693 703 6.700520 AGGCTAATAATAGTAGTTGTGCGAAC 59.299 38.462 0.00 0.00 0.00 3.95
694 704 6.812998 AGGCTAATAATAGTAGTTGTGCGAA 58.187 36.000 0.00 0.00 0.00 4.70
695 705 6.401047 AGGCTAATAATAGTAGTTGTGCGA 57.599 37.500 0.00 0.00 0.00 5.10
696 706 6.924060 AGAAGGCTAATAATAGTAGTTGTGCG 59.076 38.462 0.00 0.00 0.00 5.34
697 707 9.413048 CTAGAAGGCTAATAATAGTAGTTGTGC 57.587 37.037 0.00 0.00 0.00 4.57
698 708 9.413048 GCTAGAAGGCTAATAATAGTAGTTGTG 57.587 37.037 0.00 0.00 0.00 3.33
699 709 9.369672 AGCTAGAAGGCTAATAATAGTAGTTGT 57.630 33.333 0.00 0.00 41.16 3.32
705 715 8.929487 ACTCAAAGCTAGAAGGCTAATAATAGT 58.071 33.333 0.00 0.00 42.24 2.12
708 718 8.929487 AGTACTCAAAGCTAGAAGGCTAATAAT 58.071 33.333 0.00 0.00 42.24 1.28
709 719 8.307582 AGTACTCAAAGCTAGAAGGCTAATAA 57.692 34.615 0.00 0.00 42.24 1.40
710 720 7.899648 AGTACTCAAAGCTAGAAGGCTAATA 57.100 36.000 0.00 0.00 42.24 0.98
711 721 6.800072 AGTACTCAAAGCTAGAAGGCTAAT 57.200 37.500 0.00 0.00 42.24 1.73
712 722 6.890814 AGTAGTACTCAAAGCTAGAAGGCTAA 59.109 38.462 0.00 0.00 42.24 3.09
713 723 6.424883 AGTAGTACTCAAAGCTAGAAGGCTA 58.575 40.000 0.00 0.00 42.24 3.93
714 724 5.265989 AGTAGTACTCAAAGCTAGAAGGCT 58.734 41.667 0.00 0.00 45.30 4.58
715 725 5.585820 AGTAGTACTCAAAGCTAGAAGGC 57.414 43.478 0.00 0.00 0.00 4.35
716 726 7.868906 ACTAGTAGTACTCAAAGCTAGAAGG 57.131 40.000 5.96 0.00 32.64 3.46
717 727 9.603921 ACTACTAGTAGTACTCAAAGCTAGAAG 57.396 37.037 29.96 4.59 43.98 2.85
738 748 8.804204 GCCATCTTACCTACAACATATACTACT 58.196 37.037 0.00 0.00 0.00 2.57
739 749 8.033626 GGCCATCTTACCTACAACATATACTAC 58.966 40.741 0.00 0.00 0.00 2.73
743 754 6.785466 TCTGGCCATCTTACCTACAACATATA 59.215 38.462 5.51 0.00 0.00 0.86
796 1100 2.193447 CACGACACGAAGATGGTATGG 58.807 52.381 0.00 0.00 0.00 2.74
872 1195 0.174845 TTTATGGTCGAGGCTGGTCG 59.825 55.000 0.00 0.00 41.51 4.79
877 1202 5.481824 TGATCATCTATTTATGGTCGAGGCT 59.518 40.000 0.00 0.00 39.44 4.58
904 1238 2.278923 GGCTTAGAGACGCTCGGC 60.279 66.667 0.00 0.00 35.36 5.54
905 1239 2.413765 GGGCTTAGAGACGCTCGG 59.586 66.667 0.00 0.00 35.36 4.63
911 1245 0.253327 CTTGGGTGGGGCTTAGAGAC 59.747 60.000 0.00 0.00 0.00 3.36
920 1254 0.326264 CTTGAGAGTCTTGGGTGGGG 59.674 60.000 0.00 0.00 0.00 4.96
935 1271 2.573462 AGGATTAGTGAGCTTGGCTTGA 59.427 45.455 0.00 0.00 39.88 3.02
973 1314 1.360911 GAGCTTCGATCGGGAGGAC 59.639 63.158 16.41 2.61 0.00 3.85
990 1332 0.037697 ACGACGCCATTGTAGCTTGA 60.038 50.000 0.00 0.00 0.00 3.02
1368 2491 4.779733 ATGAGGTCCTCCGGCGGT 62.780 66.667 27.32 4.66 39.05 5.68
1452 2581 3.244887 TGGTCACCTGGATAGATCGAT 57.755 47.619 0.00 0.00 0.00 3.59
1453 2582 2.748209 TGGTCACCTGGATAGATCGA 57.252 50.000 0.00 0.00 0.00 3.59
1454 2583 3.458189 GTTTGGTCACCTGGATAGATCG 58.542 50.000 0.00 0.00 0.00 3.69
1455 2584 3.741388 CGGTTTGGTCACCTGGATAGATC 60.741 52.174 0.00 0.00 34.22 2.75
1519 2657 6.127786 CCCTAGCTACACGTAAGAGTAAAACT 60.128 42.308 1.43 0.00 42.73 2.66
1520 2658 6.032717 CCCTAGCTACACGTAAGAGTAAAAC 58.967 44.000 1.43 0.00 42.73 2.43
1523 2661 4.848357 ACCCTAGCTACACGTAAGAGTAA 58.152 43.478 1.43 0.00 42.73 2.24
1524 2662 4.494091 ACCCTAGCTACACGTAAGAGTA 57.506 45.455 1.43 0.00 42.53 2.59
1525 2663 3.362870 ACCCTAGCTACACGTAAGAGT 57.637 47.619 1.43 0.00 45.26 3.24
1526 2664 3.946558 AGAACCCTAGCTACACGTAAGAG 59.053 47.826 1.43 0.00 43.62 2.85
1527 2665 3.960571 AGAACCCTAGCTACACGTAAGA 58.039 45.455 1.43 0.00 43.62 2.10
1528 2666 4.880696 ACTAGAACCCTAGCTACACGTAAG 59.119 45.833 0.00 0.00 44.87 2.34
1540 2678 9.856162 AAAAACAGTGAATTAACTAGAACCCTA 57.144 29.630 0.00 0.00 0.00 3.53
1541 2679 8.762481 AAAAACAGTGAATTAACTAGAACCCT 57.238 30.769 0.00 0.00 0.00 4.34
1593 2734 2.961526 TTTACTCACGCATCTCCTCC 57.038 50.000 0.00 0.00 0.00 4.30
1601 2742 6.198403 GTCTCGATCATTATTTTACTCACGCA 59.802 38.462 0.00 0.00 0.00 5.24
1631 2772 1.614241 GGCCGTTAGGAGCCTTCTCA 61.614 60.000 0.00 0.00 46.14 3.27
1639 2780 0.744874 TGATCTTCGGCCGTTAGGAG 59.255 55.000 27.15 15.66 41.02 3.69
1640 2781 1.340248 GATGATCTTCGGCCGTTAGGA 59.660 52.381 27.15 13.48 41.02 2.94
1645 2786 0.039074 GATCGATGATCTTCGGCCGT 60.039 55.000 27.15 5.04 39.56 5.68
1652 2793 2.756829 CTGCAGCTGATCGATGATCTT 58.243 47.619 20.43 0.00 39.56 2.40
1681 2822 5.634896 CATCCTTCTTCAACTTCCAATTCG 58.365 41.667 0.00 0.00 0.00 3.34
1685 2826 3.831323 TGCATCCTTCTTCAACTTCCAA 58.169 40.909 0.00 0.00 0.00 3.53
1693 2834 3.732212 CATCCGTATGCATCCTTCTTCA 58.268 45.455 0.19 0.00 0.00 3.02
1711 2852 8.839310 AACATGGAGTATCTATAAGTTGCATC 57.161 34.615 0.00 0.00 32.15 3.91
1789 2930 0.179129 GCCACAGTGTGCCATAATGC 60.179 55.000 18.21 9.98 31.34 3.56
1819 2960 2.467962 CGGAGAGAGACGCTGTACA 58.532 57.895 0.00 0.00 0.00 2.90
1826 2967 0.796927 TATATGCGCGGAGAGAGACG 59.203 55.000 8.83 0.00 0.00 4.18
1927 3068 4.881440 TGCGCCCTGGATCCATGC 62.881 66.667 16.63 19.37 0.00 4.06
1930 3071 1.631071 TACATTGCGCCCTGGATCCA 61.631 55.000 15.27 15.27 0.00 3.41
1937 3078 0.810031 GATGACGTACATTGCGCCCT 60.810 55.000 4.18 0.00 39.56 5.19
1940 3081 4.851989 CGATGACGTACATTGCGC 57.148 55.556 0.00 0.00 39.56 6.09
1959 3100 3.554692 GCCATGTCGGAAGCGTCG 61.555 66.667 0.00 0.00 36.56 5.12
1969 3110 2.168521 TGCTGTAGGTAGAAGCCATGTC 59.831 50.000 0.00 0.00 36.05 3.06
1987 3128 1.065854 GTTGCAGGACTAGACCATGCT 60.066 52.381 24.14 2.68 36.14 3.79
1988 3129 1.373570 GTTGCAGGACTAGACCATGC 58.626 55.000 20.26 20.26 35.90 4.06
2017 3158 3.945921 ACCTTAAGCGCCTAAAAAGGATC 59.054 43.478 22.79 0.00 39.26 3.36
2025 3166 1.605453 CCCCACCTTAAGCGCCTAA 59.395 57.895 2.29 0.00 0.00 2.69
2026 3167 2.372074 CCCCCACCTTAAGCGCCTA 61.372 63.158 2.29 0.00 0.00 3.93
2027 3168 3.728373 CCCCCACCTTAAGCGCCT 61.728 66.667 2.29 0.00 0.00 5.52
2028 3169 2.672181 TACCCCCACCTTAAGCGCC 61.672 63.158 2.29 0.00 0.00 6.53
2071 3212 1.364901 CCACCGTTACACGACCACT 59.635 57.895 0.00 0.00 46.05 4.00
2076 3217 2.029369 GCCACCACCGTTACACGA 59.971 61.111 0.00 0.00 46.05 4.35
2080 3221 0.594602 GAAAAGGCCACCACCGTTAC 59.405 55.000 5.01 0.00 30.70 2.50
2116 3257 5.483937 TGATAGGTAGGAGAGAAAACAGCAA 59.516 40.000 0.00 0.00 0.00 3.91
2119 3260 7.786030 TCATTGATAGGTAGGAGAGAAAACAG 58.214 38.462 0.00 0.00 0.00 3.16
2151 3292 5.940192 TCGTGAATACACAAAGATTGCTT 57.060 34.783 0.00 0.00 46.20 3.91
2196 3337 6.266786 GGGACTGTCCTTTTTAGGAATCAAAA 59.733 38.462 25.01 0.00 40.06 2.44
2198 3339 5.321927 GGGACTGTCCTTTTTAGGAATCAA 58.678 41.667 25.01 0.00 40.06 2.57
2229 3370 5.220548 CGAGAAATAGTGCTGAAGTCATTGG 60.221 44.000 0.00 0.00 0.00 3.16
2254 3395 7.709947 TGATTATCTTGATGGAGCAATTCAAC 58.290 34.615 0.00 0.00 0.00 3.18
2297 3438 1.003928 TGAGGATGACATGCTGCAGTT 59.996 47.619 14.87 0.00 0.00 3.16
2307 3448 1.901833 TGCACTAGCTTGAGGATGACA 59.098 47.619 1.04 0.00 42.74 3.58
2313 3454 4.397103 TGATTCAAATGCACTAGCTTGAGG 59.603 41.667 1.04 0.00 42.74 3.86
2352 3493 2.354805 GCAACCCTTAGTAGTCCCACTG 60.355 54.545 0.00 0.00 0.00 3.66
2355 3496 0.899720 CGCAACCCTTAGTAGTCCCA 59.100 55.000 0.00 0.00 0.00 4.37
2374 3515 5.652452 ACAAATATTCAAAGGTCTAGGCCAC 59.348 40.000 17.52 0.00 0.00 5.01
2400 3541 9.547753 GAGTTTTAGAGTGATGGCTTTGATATA 57.452 33.333 0.00 0.00 0.00 0.86
2401 3542 8.049117 TGAGTTTTAGAGTGATGGCTTTGATAT 58.951 33.333 0.00 0.00 0.00 1.63
2410 3551 4.326826 TGGCTTGAGTTTTAGAGTGATGG 58.673 43.478 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.