Multiple sequence alignment - TraesCS6D01G081200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G081200 chr6D 100.000 5503 0 0 1 5503 46859782 46854280 0.000000e+00 10163.0
1 TraesCS6D01G081200 chr6D 90.541 74 7 0 1293 1366 199474590 199474517 1.260000e-16 99.0
2 TraesCS6D01G081200 chr6D 89.189 74 8 0 1293 1366 246427008 246426935 5.870000e-15 93.5
3 TraesCS6D01G081200 chr6A 93.134 3685 165 34 700 4341 60446856 60443217 0.000000e+00 5323.0
4 TraesCS6D01G081200 chr6A 92.604 649 26 10 4336 4973 60443190 60442553 0.000000e+00 913.0
5 TraesCS6D01G081200 chr6A 92.060 466 29 6 14 471 60447874 60447409 0.000000e+00 649.0
6 TraesCS6D01G081200 chr6A 80.435 184 24 8 5329 5502 60442055 60441874 4.470000e-26 130.0
7 TraesCS6D01G081200 chr6A 83.721 86 14 0 5192 5277 615756892 615756807 1.270000e-11 82.4
8 TraesCS6D01G081200 chr6B 94.198 3240 137 26 632 3843 115949856 115946640 0.000000e+00 4894.0
9 TraesCS6D01G081200 chr6B 91.503 765 35 17 4336 5075 115946146 115945387 0.000000e+00 1026.0
10 TraesCS6D01G081200 chr6B 94.538 476 19 4 3870 4341 115946645 115946173 0.000000e+00 728.0
11 TraesCS6D01G081200 chr6B 92.647 68 0 3 509 576 38753553 38753491 5.870000e-15 93.5
12 TraesCS6D01G081200 chr6B 97.872 47 0 1 506 551 485549171 485549125 4.570000e-11 80.5
13 TraesCS6D01G081200 chr6B 100.000 29 0 0 98 126 17069770 17069742 3.000000e-03 54.7
14 TraesCS6D01G081200 chr7A 96.393 305 10 1 11 315 255899304 255899607 8.230000e-138 501.0
15 TraesCS6D01G081200 chr7A 79.775 89 14 4 5191 5277 83069268 83069354 1.660000e-05 62.1
16 TraesCS6D01G081200 chr7A 100.000 29 0 0 5249 5277 518564888 518564916 3.000000e-03 54.7
17 TraesCS6D01G081200 chr7B 88.820 322 21 10 1563 1876 734092674 734092988 1.120000e-101 381.0
18 TraesCS6D01G081200 chr7B 86.747 83 11 0 5195 5277 641335141 641335059 5.870000e-15 93.5
19 TraesCS6D01G081200 chr7B 86.813 91 2 1 507 587 704314698 704314788 5.870000e-15 93.5
20 TraesCS6D01G081200 chr7B 95.238 42 1 1 507 548 581401977 581401937 1.280000e-06 65.8
21 TraesCS6D01G081200 chr3A 85.821 268 24 6 1569 1829 187385925 187386185 7.020000e-69 272.0
22 TraesCS6D01G081200 chr3A 84.337 83 11 2 331 411 481315952 481316034 4.570000e-11 80.5
23 TraesCS6D01G081200 chr2B 85.096 208 17 9 1680 1879 724449663 724449462 3.360000e-47 200.0
24 TraesCS6D01G081200 chr1A 83.857 223 19 7 84 299 249145469 249145681 4.350000e-46 196.0
25 TraesCS6D01G081200 chr1A 89.706 68 7 0 1299 1366 532159647 532159714 2.730000e-13 87.9
26 TraesCS6D01G081200 chr1A 100.000 42 0 0 514 555 71694274 71694233 1.640000e-10 78.7
27 TraesCS6D01G081200 chr5B 84.733 131 14 4 176 301 91114294 91114423 5.790000e-25 126.0
28 TraesCS6D01G081200 chr2A 89.189 74 8 0 1293 1366 307975743 307975670 5.870000e-15 93.5
29 TraesCS6D01G081200 chr2A 95.238 42 2 0 201 242 567383326 567383285 3.560000e-07 67.6
30 TraesCS6D01G081200 chr2A 92.857 42 3 0 201 242 547407932 547407973 1.660000e-05 62.1
31 TraesCS6D01G081200 chr2A 92.857 42 3 0 201 242 547408678 547408719 1.660000e-05 62.1
32 TraesCS6D01G081200 chr4A 81.739 115 16 5 327 438 365650284 365650172 2.110000e-14 91.6
33 TraesCS6D01G081200 chr5D 85.556 90 2 6 508 587 116622499 116622587 3.530000e-12 84.2
34 TraesCS6D01G081200 chr5D 100.000 43 0 0 506 548 72935884 72935842 4.570000e-11 80.5
35 TraesCS6D01G081200 chr3B 97.872 47 0 1 506 551 778994973 778994927 4.570000e-11 80.5
36 TraesCS6D01G081200 chr4D 97.561 41 0 1 508 548 47249330 47249369 9.890000e-08 69.4
37 TraesCS6D01G081200 chr1D 95.000 40 1 1 509 548 6192293 6192331 1.660000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G081200 chr6D 46854280 46859782 5502 True 10163.00 10163 100.00000 1 5503 1 chr6D.!!$R1 5502
1 TraesCS6D01G081200 chr6A 60441874 60447874 6000 True 1753.75 5323 89.55825 14 5502 4 chr6A.!!$R2 5488
2 TraesCS6D01G081200 chr6B 115945387 115949856 4469 True 2216.00 4894 93.41300 632 5075 3 chr6B.!!$R4 4443

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 926 0.326927 TTTGAGGGGAAGGCCTTACG 59.673 55.000 21.81 0.0 0.00 3.18 F
1472 1920 1.341679 ACTGCCATGTTGCATCCTCAT 60.342 47.619 0.00 0.0 41.16 2.90 F
1509 1957 0.463295 ATCATGGCTGCGTCCTCTTG 60.463 55.000 0.00 0.0 0.00 3.02 F
2576 3034 1.066215 CACGATTGACCCAGATGACCA 60.066 52.381 0.00 0.0 0.00 4.02 F
2783 3241 1.362224 TGCCCCCTCTATAATCTGGC 58.638 55.000 0.00 0.0 37.90 4.85 F
3178 3657 1.632409 TGCAGGGCAGATCTTCTTTCT 59.368 47.619 0.00 0.0 33.32 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 1957 1.079057 GCTCGGGAAACAGGAGACC 60.079 63.158 0.00 0.00 35.21 3.85 R
2783 3241 2.026822 AGTTCTAGTTGCAGACCATGGG 60.027 50.000 18.09 0.00 0.00 4.00 R
3333 3812 5.231568 GCAAATATTCATGTCAAGCTCAAGC 59.768 40.000 0.00 0.00 42.49 4.01 R
3621 4100 0.108186 TCCGGTCATCAGCACATGTC 60.108 55.000 0.00 0.00 0.00 3.06 R
3952 4435 1.458777 CAGGGGCCATGGCATCATT 60.459 57.895 36.56 17.05 44.11 2.57 R
4911 5447 1.528586 GGATCGATGGTTGATGCTTCG 59.471 52.381 0.54 0.00 32.14 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.404315 CCGTGTAGAAGGGAAGACTGC 60.404 57.143 0.00 0.00 35.72 4.40
56 57 3.660904 CGACGCTTTCTTGAAGTTTACCG 60.661 47.826 0.00 0.00 37.69 4.02
57 58 3.200483 ACGCTTTCTTGAAGTTTACCGT 58.800 40.909 0.00 0.00 37.69 4.83
91 92 3.844640 TCGAATACCCATGGAGATCTCA 58.155 45.455 23.85 10.74 0.00 3.27
223 224 7.523293 TTGTGTTGAATTAGATGTTGTGGAT 57.477 32.000 0.00 0.00 0.00 3.41
335 341 9.050601 TGTTTTAATAAGAAGGCCAATGTTTTG 57.949 29.630 5.01 0.00 0.00 2.44
363 369 6.534059 CACCAGTTTTACATCATCTGTTACG 58.466 40.000 0.00 0.00 39.39 3.18
365 371 6.367969 ACCAGTTTTACATCATCTGTTACGAC 59.632 38.462 0.00 0.00 39.39 4.34
377 384 7.857569 TCATCTGTTACGACGAAAAATTTCTT 58.142 30.769 0.00 0.00 35.07 2.52
378 385 8.007716 TCATCTGTTACGACGAAAAATTTCTTC 58.992 33.333 0.00 3.79 35.07 2.87
382 389 4.813296 ACGACGAAAAATTTCTTCTGCT 57.187 36.364 0.00 0.00 34.42 4.24
385 392 5.694910 ACGACGAAAAATTTCTTCTGCTCTA 59.305 36.000 0.00 0.00 34.42 2.43
394 401 8.470657 AAATTTCTTCTGCTCTAAAACCTTCT 57.529 30.769 0.00 0.00 0.00 2.85
397 404 6.031751 TCTTCTGCTCTAAAACCTTCTCTC 57.968 41.667 0.00 0.00 0.00 3.20
403 410 4.221924 GCTCTAAAACCTTCTCTCTCCTGT 59.778 45.833 0.00 0.00 0.00 4.00
445 452 9.319143 ACACTAACTTTTACATCATAGATGCTC 57.681 33.333 6.90 0.00 0.00 4.26
448 455 9.755804 CTAACTTTTACATCATAGATGCTCTCA 57.244 33.333 6.90 0.00 0.00 3.27
464 472 4.581824 TGCTCTCATGAGAAGCAAGTTTTT 59.418 37.500 30.74 0.00 42.73 1.94
501 897 7.421087 AAGAAGTAAGTAGTGGGAACTATCC 57.579 40.000 0.00 0.00 45.77 2.59
529 925 2.597578 TTTTGAGGGGAAGGCCTTAC 57.402 50.000 20.56 20.56 0.00 2.34
530 926 0.326927 TTTGAGGGGAAGGCCTTACG 59.673 55.000 21.81 0.00 0.00 3.18
531 927 1.559065 TTGAGGGGAAGGCCTTACGG 61.559 60.000 21.81 0.00 0.00 4.02
548 944 7.175073 CCTTACGGCTAGCTTTATTAACTTC 57.825 40.000 15.72 0.00 0.00 3.01
549 945 6.759827 CCTTACGGCTAGCTTTATTAACTTCA 59.240 38.462 15.72 0.00 0.00 3.02
550 946 7.279313 CCTTACGGCTAGCTTTATTAACTTCAA 59.721 37.037 15.72 0.00 0.00 2.69
551 947 6.663944 ACGGCTAGCTTTATTAACTTCAAG 57.336 37.500 15.72 0.00 0.00 3.02
552 948 5.064834 ACGGCTAGCTTTATTAACTTCAAGC 59.935 40.000 15.72 0.00 41.72 4.01
553 949 5.064707 CGGCTAGCTTTATTAACTTCAAGCA 59.935 40.000 15.72 0.00 43.48 3.91
554 950 6.403200 CGGCTAGCTTTATTAACTTCAAGCAA 60.403 38.462 15.72 0.00 43.48 3.91
555 951 7.312899 GGCTAGCTTTATTAACTTCAAGCAAA 58.687 34.615 15.72 0.00 43.48 3.68
556 952 7.976175 GGCTAGCTTTATTAACTTCAAGCAAAT 59.024 33.333 15.72 0.00 43.48 2.32
557 953 9.014533 GCTAGCTTTATTAACTTCAAGCAAATC 57.985 33.333 7.70 0.00 43.48 2.17
558 954 9.508567 CTAGCTTTATTAACTTCAAGCAAATCC 57.491 33.333 0.00 0.00 43.48 3.01
559 955 7.029563 AGCTTTATTAACTTCAAGCAAATCCG 58.970 34.615 5.60 0.00 43.48 4.18
560 956 6.237569 GCTTTATTAACTTCAAGCAAATCCGC 60.238 38.462 0.00 0.00 41.16 5.54
561 957 4.782019 ATTAACTTCAAGCAAATCCGCA 57.218 36.364 0.00 0.00 0.00 5.69
562 958 4.576216 TTAACTTCAAGCAAATCCGCAA 57.424 36.364 0.00 0.00 0.00 4.85
563 959 2.712057 ACTTCAAGCAAATCCGCAAG 57.288 45.000 0.00 0.00 0.00 4.01
564 960 1.956477 ACTTCAAGCAAATCCGCAAGT 59.044 42.857 0.00 0.00 0.00 3.16
565 961 3.146066 ACTTCAAGCAAATCCGCAAGTA 58.854 40.909 0.00 0.00 0.00 2.24
566 962 3.568007 ACTTCAAGCAAATCCGCAAGTAA 59.432 39.130 0.00 0.00 0.00 2.24
567 963 4.037446 ACTTCAAGCAAATCCGCAAGTAAA 59.963 37.500 0.00 0.00 0.00 2.01
568 964 4.576216 TCAAGCAAATCCGCAAGTAAAA 57.424 36.364 0.00 0.00 0.00 1.52
569 965 4.295051 TCAAGCAAATCCGCAAGTAAAAC 58.705 39.130 0.00 0.00 0.00 2.43
570 966 3.297830 AGCAAATCCGCAAGTAAAACC 57.702 42.857 0.00 0.00 0.00 3.27
571 967 1.982913 GCAAATCCGCAAGTAAAACCG 59.017 47.619 0.00 0.00 0.00 4.44
572 968 2.350964 GCAAATCCGCAAGTAAAACCGA 60.351 45.455 0.00 0.00 0.00 4.69
573 969 3.854045 GCAAATCCGCAAGTAAAACCGAA 60.854 43.478 0.00 0.00 0.00 4.30
574 970 4.291783 CAAATCCGCAAGTAAAACCGAAA 58.708 39.130 0.00 0.00 0.00 3.46
575 971 4.776795 AATCCGCAAGTAAAACCGAAAT 57.223 36.364 0.00 0.00 0.00 2.17
576 972 3.546002 TCCGCAAGTAAAACCGAAATG 57.454 42.857 0.00 0.00 0.00 2.32
577 973 3.139850 TCCGCAAGTAAAACCGAAATGA 58.860 40.909 0.00 0.00 0.00 2.57
578 974 3.564644 TCCGCAAGTAAAACCGAAATGAA 59.435 39.130 0.00 0.00 0.00 2.57
579 975 4.036498 TCCGCAAGTAAAACCGAAATGAAA 59.964 37.500 0.00 0.00 0.00 2.69
580 976 4.147479 CCGCAAGTAAAACCGAAATGAAAC 59.853 41.667 0.00 0.00 0.00 2.78
581 977 4.973663 CGCAAGTAAAACCGAAATGAAACT 59.026 37.500 0.00 0.00 0.00 2.66
582 978 6.137415 CGCAAGTAAAACCGAAATGAAACTA 58.863 36.000 0.00 0.00 0.00 2.24
583 979 6.302313 CGCAAGTAAAACCGAAATGAAACTAG 59.698 38.462 0.00 0.00 0.00 2.57
584 980 6.581166 GCAAGTAAAACCGAAATGAAACTAGG 59.419 38.462 0.00 0.00 0.00 3.02
585 981 6.812879 AGTAAAACCGAAATGAAACTAGGG 57.187 37.500 0.00 0.00 0.00 3.53
586 982 5.708697 AGTAAAACCGAAATGAAACTAGGGG 59.291 40.000 0.00 0.00 0.00 4.79
587 983 4.376225 AAACCGAAATGAAACTAGGGGA 57.624 40.909 0.00 0.00 0.00 4.81
588 984 4.376225 AACCGAAATGAAACTAGGGGAA 57.624 40.909 0.00 0.00 0.00 3.97
589 985 4.376225 ACCGAAATGAAACTAGGGGAAA 57.624 40.909 0.00 0.00 0.00 3.13
590 986 4.732065 ACCGAAATGAAACTAGGGGAAAA 58.268 39.130 0.00 0.00 0.00 2.29
591 987 4.765339 ACCGAAATGAAACTAGGGGAAAAG 59.235 41.667 0.00 0.00 0.00 2.27
592 988 5.007682 CCGAAATGAAACTAGGGGAAAAGA 58.992 41.667 0.00 0.00 0.00 2.52
593 989 5.475564 CCGAAATGAAACTAGGGGAAAAGAA 59.524 40.000 0.00 0.00 0.00 2.52
594 990 6.379386 CGAAATGAAACTAGGGGAAAAGAAC 58.621 40.000 0.00 0.00 0.00 3.01
595 991 6.206829 CGAAATGAAACTAGGGGAAAAGAACT 59.793 38.462 0.00 0.00 0.00 3.01
596 992 7.389607 CGAAATGAAACTAGGGGAAAAGAACTA 59.610 37.037 0.00 0.00 0.00 2.24
597 993 9.244292 GAAATGAAACTAGGGGAAAAGAACTAT 57.756 33.333 0.00 0.00 0.00 2.12
598 994 8.809468 AATGAAACTAGGGGAAAAGAACTATC 57.191 34.615 0.00 0.00 0.00 2.08
599 995 6.718294 TGAAACTAGGGGAAAAGAACTATCC 58.282 40.000 0.00 0.00 0.00 2.59
600 996 5.354842 AACTAGGGGAAAAGAACTATCCG 57.645 43.478 0.00 0.00 33.90 4.18
601 997 3.710165 ACTAGGGGAAAAGAACTATCCGG 59.290 47.826 0.00 0.00 33.90 5.14
602 998 2.558974 AGGGGAAAAGAACTATCCGGT 58.441 47.619 0.00 0.00 33.90 5.28
603 999 2.917600 AGGGGAAAAGAACTATCCGGTT 59.082 45.455 0.00 0.00 33.90 4.44
604 1000 4.106324 AGGGGAAAAGAACTATCCGGTTA 58.894 43.478 0.00 0.00 33.90 2.85
605 1001 4.537288 AGGGGAAAAGAACTATCCGGTTAA 59.463 41.667 0.00 0.00 33.90 2.01
606 1002 5.193124 AGGGGAAAAGAACTATCCGGTTAAT 59.807 40.000 0.00 0.00 33.90 1.40
607 1003 6.387807 AGGGGAAAAGAACTATCCGGTTAATA 59.612 38.462 0.00 0.00 33.90 0.98
608 1004 7.073343 AGGGGAAAAGAACTATCCGGTTAATAT 59.927 37.037 0.00 0.00 33.90 1.28
609 1005 7.722728 GGGGAAAAGAACTATCCGGTTAATATT 59.277 37.037 0.00 0.00 33.90 1.28
610 1006 9.128404 GGGAAAAGAACTATCCGGTTAATATTT 57.872 33.333 0.00 0.00 33.90 1.40
630 1026 8.894768 ATATTTCTGAGGAAAAGAACTATCCG 57.105 34.615 0.00 0.00 43.51 4.18
648 1044 1.679944 CCGGTCAAATGCCAGATGTCT 60.680 52.381 0.00 0.00 0.00 3.41
725 1156 4.601794 TGGGTGTGCCAAGCCCAG 62.602 66.667 3.63 0.00 46.59 4.45
737 1168 3.998672 GCCCAGGAACGGACGACA 61.999 66.667 0.00 0.00 0.00 4.35
947 1390 2.803386 CGAGAGATCGAATCGGAGAAGA 59.197 50.000 1.76 0.00 35.76 2.87
948 1391 3.248841 CGAGAGATCGAATCGGAGAAGAA 59.751 47.826 1.76 0.00 35.76 2.52
949 1392 4.610456 CGAGAGATCGAATCGGAGAAGAAG 60.610 50.000 1.76 0.00 35.76 2.85
1072 1520 4.095400 GGCTCCCTCCCTCCCTCA 62.095 72.222 0.00 0.00 0.00 3.86
1074 1522 2.780693 CTCCCTCCCTCCCTCACA 59.219 66.667 0.00 0.00 0.00 3.58
1075 1523 1.687493 CTCCCTCCCTCCCTCACAC 60.687 68.421 0.00 0.00 0.00 3.82
1076 1524 2.122729 CCCTCCCTCCCTCACACA 59.877 66.667 0.00 0.00 0.00 3.72
1078 1526 2.294078 CCTCCCTCCCTCACACACC 61.294 68.421 0.00 0.00 0.00 4.16
1079 1527 2.203938 TCCCTCCCTCACACACCC 60.204 66.667 0.00 0.00 0.00 4.61
1080 1528 3.330720 CCCTCCCTCACACACCCC 61.331 72.222 0.00 0.00 0.00 4.95
1081 1529 3.330720 CCTCCCTCACACACCCCC 61.331 72.222 0.00 0.00 0.00 5.40
1188 1636 2.508439 TCGCGCCGGTGAGATTTC 60.508 61.111 21.76 0.00 0.00 2.17
1254 1702 4.352039 GAGTACGATGCTCTTCGATTTGA 58.648 43.478 11.31 0.00 41.62 2.69
1303 1751 3.119225 CTCTCGGTTAGGAGGGGAG 57.881 63.158 0.00 0.00 34.74 4.30
1423 1871 4.274978 TCCTTGATCCGTAGTCATGTGTA 58.725 43.478 0.00 0.00 0.00 2.90
1472 1920 1.341679 ACTGCCATGTTGCATCCTCAT 60.342 47.619 0.00 0.00 41.16 2.90
1473 1921 1.754803 CTGCCATGTTGCATCCTCATT 59.245 47.619 0.00 0.00 41.16 2.57
1509 1957 0.463295 ATCATGGCTGCGTCCTCTTG 60.463 55.000 0.00 0.00 0.00 3.02
1693 2144 4.885325 ACTGGTTTTGTTTAATCTGGACGT 59.115 37.500 0.00 0.00 0.00 4.34
1749 2207 4.052159 AGAGTGGAGCTATTTGATGTCG 57.948 45.455 0.00 0.00 0.00 4.35
1763 2221 4.398549 TGATGTCGGAACATTTCGTTTC 57.601 40.909 0.00 0.00 46.20 2.78
1770 2228 4.084066 TCGGAACATTTCGTTTCTGATGTG 60.084 41.667 0.00 0.00 38.19 3.21
1821 2279 8.143193 TGCTGATCAGTTTGTTGATTAATGTTT 58.857 29.630 23.38 0.00 37.90 2.83
1931 2389 4.084013 CGGAGATGGTACGCATTTTAATCC 60.084 45.833 0.00 0.00 0.00 3.01
2417 2875 1.755179 ACTGCTTCTGTTGTTGCTGT 58.245 45.000 0.00 0.00 33.85 4.40
2576 3034 1.066215 CACGATTGACCCAGATGACCA 60.066 52.381 0.00 0.00 0.00 4.02
2635 3093 9.415544 GGACTGTAAGAGAAAAGTACGAAAATA 57.584 33.333 0.00 0.00 37.43 1.40
2734 3192 2.434336 TGTTGCACACAGTTCTCTAGGT 59.566 45.455 0.00 0.00 0.00 3.08
2760 3218 5.923684 CGGTGTTTTGGTACATTATTTGCTT 59.076 36.000 0.00 0.00 39.30 3.91
2783 3241 1.362224 TGCCCCCTCTATAATCTGGC 58.638 55.000 0.00 0.00 37.90 4.85
2789 3247 2.240667 CCCTCTATAATCTGGCCCATGG 59.759 54.545 4.14 4.14 0.00 3.66
2807 3265 3.838244 TGGTCTGCAACTAGAACTTGT 57.162 42.857 0.00 0.00 35.41 3.16
2836 3300 7.645058 ACTGAACCCTATTGTCCAATATTTG 57.355 36.000 0.48 0.00 33.29 2.32
2940 3404 9.573133 CAATTTTTCTGGGTGTAAGATGTATTC 57.427 33.333 0.00 0.00 0.00 1.75
3084 3548 2.233271 CATCTCAAACAAGCACCCACT 58.767 47.619 0.00 0.00 0.00 4.00
3089 3553 3.096092 TCAAACAAGCACCCACTTTCTT 58.904 40.909 0.00 0.00 0.00 2.52
3090 3554 4.274147 TCAAACAAGCACCCACTTTCTTA 58.726 39.130 0.00 0.00 0.00 2.10
3178 3657 1.632409 TGCAGGGCAGATCTTCTTTCT 59.368 47.619 0.00 0.00 33.32 2.52
3333 3812 7.002250 TCCTATGCTCTCAGAAATCCTTATG 57.998 40.000 0.00 0.00 0.00 1.90
3334 3813 5.642919 CCTATGCTCTCAGAAATCCTTATGC 59.357 44.000 0.00 0.00 0.00 3.14
3335 3814 4.767578 TGCTCTCAGAAATCCTTATGCT 57.232 40.909 0.00 0.00 0.00 3.79
3336 3815 5.108187 TGCTCTCAGAAATCCTTATGCTT 57.892 39.130 0.00 0.00 0.00 3.91
3337 3816 4.880120 TGCTCTCAGAAATCCTTATGCTTG 59.120 41.667 0.00 0.00 0.00 4.01
3338 3817 5.121811 GCTCTCAGAAATCCTTATGCTTGA 58.878 41.667 0.00 0.00 0.00 3.02
3366 3845 9.529325 CTTGACATGAATATTTGCTCAATGAAT 57.471 29.630 0.00 0.00 0.00 2.57
3373 3852 9.153721 TGAATATTTGCTCAATGAATGTTTTCC 57.846 29.630 0.00 0.00 0.00 3.13
3466 3945 8.980481 AGAAAGTTGAGAAGGACATTAAGAAA 57.020 30.769 0.00 0.00 0.00 2.52
3621 4100 9.299963 GATAGTCATCGATAATTTCATGGAGAG 57.700 37.037 0.00 0.00 0.00 3.20
3648 4127 2.290260 TGCTGATGACCGGAAAATCTGT 60.290 45.455 9.46 0.00 0.00 3.41
3843 4326 6.145535 CCTTTTAGCAGCACTTCTTTAACAG 58.854 40.000 0.00 0.00 0.00 3.16
3864 4347 4.631813 CAGCTTTTAACCTAGACGCTGAAT 59.368 41.667 0.00 0.00 44.37 2.57
3868 4351 5.654603 TTTAACCTAGACGCTGAATGAGA 57.345 39.130 0.00 0.00 0.00 3.27
3925 4408 5.689383 TTGTTGATTTGCTACAGGAGTTC 57.311 39.130 0.00 0.00 33.89 3.01
3967 4450 2.435437 AGTTAAAATGATGCCATGGCCC 59.565 45.455 33.44 24.26 41.09 5.80
3983 4467 0.389025 GCCCCTGTTGTTTGTTCCTG 59.611 55.000 0.00 0.00 0.00 3.86
3993 4477 2.291282 TGTTTGTTCCTGAGTGTTGGGT 60.291 45.455 0.00 0.00 0.00 4.51
4033 4517 5.482908 ACATCTGCTGTTTAGTCCTGTTAG 58.517 41.667 0.00 0.00 32.90 2.34
4041 4525 2.691409 TAGTCCTGTTAGGTGCATGC 57.309 50.000 11.82 11.82 36.53 4.06
4221 4706 0.968405 TTGTTGAAGCAATGGAGGGC 59.032 50.000 0.00 0.00 0.00 5.19
4294 4781 4.861102 ACCTCAAATCTTTCAAGGCTTG 57.139 40.909 21.17 21.17 0.00 4.01
4364 4883 4.555360 CACTCAAGTCGTCATAGAGTTTCG 59.445 45.833 0.00 0.00 37.45 3.46
4565 5086 3.430333 TTTTCTTTTCAAGTGACGGCC 57.570 42.857 0.00 0.00 0.00 6.13
4858 5389 6.144402 GCAGTTTCGATTTTCATTGACATGTT 59.856 34.615 0.00 0.00 0.00 2.71
4874 5405 6.406370 TGACATGTTATACCTGGACTTCAAG 58.594 40.000 0.00 0.00 0.00 3.02
4879 5410 6.021030 TGTTATACCTGGACTTCAAGTACCT 58.979 40.000 0.00 0.00 0.00 3.08
4884 5415 4.887655 ACCTGGACTTCAAGTACCTTTTTG 59.112 41.667 0.00 0.00 0.00 2.44
4885 5416 4.278419 CCTGGACTTCAAGTACCTTTTTGG 59.722 45.833 0.00 0.00 42.93 3.28
4939 5482 5.575957 CATCAACCATCGATCCAAAAGAAG 58.424 41.667 0.00 0.00 0.00 2.85
5069 5614 4.673441 ACTAGTCAAGCTAACATGTAGCG 58.327 43.478 16.48 8.02 44.73 4.26
5075 5620 2.422597 AGCTAACATGTAGCGTTGCAA 58.577 42.857 16.48 0.00 44.73 4.08
5076 5621 2.159627 AGCTAACATGTAGCGTTGCAAC 59.840 45.455 19.89 19.89 44.73 4.17
5077 5622 2.727916 GCTAACATGTAGCGTTGCAACC 60.728 50.000 23.42 15.73 0.00 3.77
5078 5623 1.604604 AACATGTAGCGTTGCAACCT 58.395 45.000 23.42 21.35 0.00 3.50
5079 5624 0.874390 ACATGTAGCGTTGCAACCTG 59.126 50.000 23.42 11.78 0.00 4.00
5089 5634 4.868195 GCAACCTGCGGTTTGATC 57.132 55.556 7.05 0.00 44.33 2.92
5090 5635 1.956043 GCAACCTGCGGTTTGATCA 59.044 52.632 7.05 0.00 44.33 2.92
5091 5636 0.527565 GCAACCTGCGGTTTGATCAT 59.472 50.000 7.05 0.00 44.33 2.45
5093 5638 2.223340 GCAACCTGCGGTTTGATCATAG 60.223 50.000 7.05 0.00 44.33 2.23
5095 5640 3.350219 ACCTGCGGTTTGATCATAGTT 57.650 42.857 0.00 0.00 27.29 2.24
5098 5643 3.879295 CCTGCGGTTTGATCATAGTTGAT 59.121 43.478 0.00 0.00 45.39 2.57
5099 5644 5.056480 CCTGCGGTTTGATCATAGTTGATA 58.944 41.667 0.00 0.00 42.73 2.15
5102 5647 7.387673 CCTGCGGTTTGATCATAGTTGATAATA 59.612 37.037 0.00 0.00 42.73 0.98
5103 5648 8.846943 TGCGGTTTGATCATAGTTGATAATAT 57.153 30.769 0.00 0.00 42.73 1.28
5104 5649 9.283768 TGCGGTTTGATCATAGTTGATAATATT 57.716 29.630 0.00 0.00 42.73 1.28
5147 5692 9.911788 ATATAGCTTGGCATGTAATTTATAGCT 57.088 29.630 7.95 7.95 39.52 3.32
5150 5695 8.641498 AGCTTGGCATGTAATTTATAGCTAAT 57.359 30.769 0.00 0.00 34.92 1.73
5185 5730 6.946229 TTTTAACAGAATAGAGACGCAGAC 57.054 37.500 0.00 0.00 0.00 3.51
5187 5732 2.357075 ACAGAATAGAGACGCAGACGA 58.643 47.619 0.00 0.00 43.93 4.20
5188 5733 2.747989 ACAGAATAGAGACGCAGACGAA 59.252 45.455 0.00 0.00 43.93 3.85
5189 5734 3.378742 ACAGAATAGAGACGCAGACGAAT 59.621 43.478 0.00 0.00 43.93 3.34
5190 5735 3.728221 CAGAATAGAGACGCAGACGAATG 59.272 47.826 0.00 0.00 43.93 2.67
5191 5736 3.378742 AGAATAGAGACGCAGACGAATGT 59.621 43.478 0.00 0.00 43.93 2.71
5192 5737 4.575236 AGAATAGAGACGCAGACGAATGTA 59.425 41.667 0.00 0.00 43.93 2.29
5193 5738 2.546195 AGAGACGCAGACGAATGTAC 57.454 50.000 0.00 0.00 43.93 2.90
5194 5739 1.810755 AGAGACGCAGACGAATGTACA 59.189 47.619 0.00 0.00 43.93 2.90
5195 5740 1.912110 GAGACGCAGACGAATGTACAC 59.088 52.381 0.00 0.00 43.93 2.90
5196 5741 1.540267 AGACGCAGACGAATGTACACT 59.460 47.619 0.00 0.00 43.93 3.55
5197 5742 2.030185 AGACGCAGACGAATGTACACTT 60.030 45.455 0.00 0.00 43.93 3.16
5198 5743 3.189910 AGACGCAGACGAATGTACACTTA 59.810 43.478 0.00 0.00 43.93 2.24
5199 5744 4.103357 GACGCAGACGAATGTACACTTAT 58.897 43.478 0.00 0.00 43.93 1.73
5200 5745 4.103357 ACGCAGACGAATGTACACTTATC 58.897 43.478 0.00 0.00 43.93 1.75
5201 5746 3.486108 CGCAGACGAATGTACACTTATCC 59.514 47.826 0.00 0.00 43.93 2.59
5202 5747 4.683832 GCAGACGAATGTACACTTATCCT 58.316 43.478 0.00 0.00 0.00 3.24
5203 5748 5.109903 GCAGACGAATGTACACTTATCCTT 58.890 41.667 0.00 0.00 0.00 3.36
5204 5749 6.270815 GCAGACGAATGTACACTTATCCTTA 58.729 40.000 0.00 0.00 0.00 2.69
5205 5750 6.924060 GCAGACGAATGTACACTTATCCTTAT 59.076 38.462 0.00 0.00 0.00 1.73
5206 5751 8.080417 GCAGACGAATGTACACTTATCCTTATA 58.920 37.037 0.00 0.00 0.00 0.98
5207 5752 9.961265 CAGACGAATGTACACTTATCCTTATAA 57.039 33.333 0.00 0.00 0.00 0.98
5210 5755 9.241317 ACGAATGTACACTTATCCTTATAAACG 57.759 33.333 0.00 0.00 0.00 3.60
5211 5756 8.212495 CGAATGTACACTTATCCTTATAAACGC 58.788 37.037 0.00 0.00 0.00 4.84
5212 5757 8.951787 AATGTACACTTATCCTTATAAACGCA 57.048 30.769 0.00 0.00 0.00 5.24
5213 5758 9.555727 AATGTACACTTATCCTTATAAACGCAT 57.444 29.630 0.00 0.00 0.00 4.73
5214 5759 8.360325 TGTACACTTATCCTTATAAACGCATG 57.640 34.615 0.00 0.00 0.00 4.06
5217 5762 8.361592 ACACTTATCCTTATAAACGCATGTAC 57.638 34.615 0.00 0.00 0.00 2.90
5224 5769 0.791422 TAAACGCATGTACGCACACC 59.209 50.000 0.00 0.00 37.54 4.16
5225 5770 0.882927 AAACGCATGTACGCACACCT 60.883 50.000 0.00 0.00 37.54 4.00
5238 5783 5.086104 ACGCACACCTTATCTTTATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
5240 5785 6.817184 ACGCACACCTTATCTTTATGAGTAT 58.183 36.000 0.00 0.00 0.00 2.12
5257 5802 9.862371 TTATGAGTATCTTCAAAAGACTGAGTC 57.138 33.333 3.98 3.98 41.01 3.36
5260 5805 6.383415 AGTATCTTCAAAAGACTGAGTCGAC 58.617 40.000 7.70 7.70 41.01 4.20
5264 5809 6.925211 TCTTCAAAAGACTGAGTCGACATAT 58.075 36.000 19.50 0.00 37.67 1.78
5265 5810 7.030165 TCTTCAAAAGACTGAGTCGACATATC 58.970 38.462 19.50 7.36 37.67 1.63
5266 5811 6.267496 TCAAAAGACTGAGTCGACATATCA 57.733 37.500 19.50 11.89 37.67 2.15
5267 5812 6.867550 TCAAAAGACTGAGTCGACATATCAT 58.132 36.000 19.50 3.53 37.67 2.45
5269 5814 7.819415 TCAAAAGACTGAGTCGACATATCATTT 59.181 33.333 19.50 11.44 37.67 2.32
5270 5815 8.446273 CAAAAGACTGAGTCGACATATCATTTT 58.554 33.333 19.50 14.01 37.67 1.82
5273 5818 6.977502 AGACTGAGTCGACATATCATTTTGAG 59.022 38.462 19.50 0.00 37.67 3.02
5274 5819 6.867550 ACTGAGTCGACATATCATTTTGAGA 58.132 36.000 19.50 0.00 0.00 3.27
5275 5820 7.495901 ACTGAGTCGACATATCATTTTGAGAT 58.504 34.615 19.50 0.00 0.00 2.75
5278 5823 6.952743 AGTCGACATATCATTTTGAGATTGC 58.047 36.000 19.50 0.00 0.00 3.56
5279 5824 6.539826 AGTCGACATATCATTTTGAGATTGCA 59.460 34.615 19.50 0.00 0.00 4.08
5280 5825 6.630443 GTCGACATATCATTTTGAGATTGCAC 59.370 38.462 11.55 0.00 0.00 4.57
5282 5827 6.458615 CGACATATCATTTTGAGATTGCACCA 60.459 38.462 0.00 0.00 0.00 4.17
5283 5828 6.567050 ACATATCATTTTGAGATTGCACCAC 58.433 36.000 0.00 0.00 0.00 4.16
5284 5829 6.153170 ACATATCATTTTGAGATTGCACCACA 59.847 34.615 0.00 0.00 0.00 4.17
5285 5830 4.933505 TCATTTTGAGATTGCACCACAA 57.066 36.364 0.00 0.00 44.01 3.33
5287 5832 5.291178 TCATTTTGAGATTGCACCACAAAG 58.709 37.500 9.56 2.93 42.86 2.77
5291 5877 2.290367 TGAGATTGCACCACAAAGAACG 59.710 45.455 0.00 0.00 42.86 3.95
5300 5886 3.813166 CACCACAAAGAACGTAACCATCT 59.187 43.478 0.00 0.00 0.00 2.90
5301 5887 3.813166 ACCACAAAGAACGTAACCATCTG 59.187 43.478 0.00 0.00 0.00 2.90
5308 5894 6.710597 AAGAACGTAACCATCTGAGCTATA 57.289 37.500 0.00 0.00 0.00 1.31
5327 5913 7.151308 AGCTATACTCAGTTTGCTAGCTAATG 58.849 38.462 17.23 13.15 39.93 1.90
5353 6206 9.790389 GTAATAGCTAGCATGTATAGTAGTTGG 57.210 37.037 18.83 0.00 0.00 3.77
5357 6210 6.071840 AGCTAGCATGTATAGTAGTTGGCTAC 60.072 42.308 18.83 0.00 45.96 3.58
5400 6254 9.699410 TTAACATATGACCCATCTTTCATTCTT 57.301 29.630 10.38 0.00 34.28 2.52
5402 6256 8.682936 ACATATGACCCATCTTTCATTCTTAC 57.317 34.615 10.38 0.00 34.28 2.34
5404 6258 9.123902 CATATGACCCATCTTTCATTCTTACAA 57.876 33.333 0.00 0.00 34.28 2.41
5406 6260 7.214467 TGACCCATCTTTCATTCTTACAAAC 57.786 36.000 0.00 0.00 0.00 2.93
5412 6266 9.793252 CCATCTTTCATTCTTACAAACCTTATG 57.207 33.333 0.00 0.00 0.00 1.90
5417 6271 5.885912 TCATTCTTACAAACCTTATGGGAGC 59.114 40.000 0.00 0.00 38.76 4.70
5419 6273 3.053917 TCTTACAAACCTTATGGGAGCCC 60.054 47.826 0.00 0.00 38.76 5.19
5420 6274 0.034477 ACAAACCTTATGGGAGCCCG 60.034 55.000 0.29 0.00 39.42 6.13
5421 6275 0.034477 CAAACCTTATGGGAGCCCGT 60.034 55.000 5.46 5.46 39.42 5.28
5422 6276 0.034477 AAACCTTATGGGAGCCCGTG 60.034 55.000 10.58 0.00 39.42 4.94
5423 6277 2.203209 CCTTATGGGAGCCCGTGC 60.203 66.667 10.58 0.00 39.42 5.34
5433 6287 2.566529 GCCCGTGCTAAAGTTGGC 59.433 61.111 0.00 0.00 34.98 4.52
5434 6288 2.989881 GCCCGTGCTAAAGTTGGCC 61.990 63.158 0.00 0.00 33.25 5.36
5435 6289 2.686816 CCCGTGCTAAAGTTGGCCG 61.687 63.158 0.00 1.02 33.25 6.13
5436 6290 1.964373 CCGTGCTAAAGTTGGCCGT 60.964 57.895 0.00 0.00 33.25 5.68
5438 6292 0.949105 CGTGCTAAAGTTGGCCGTCT 60.949 55.000 0.00 0.00 33.25 4.18
5439 6293 0.517316 GTGCTAAAGTTGGCCGTCTG 59.483 55.000 0.00 0.00 33.25 3.51
5442 6296 1.523758 CTAAAGTTGGCCGTCTGCTT 58.476 50.000 0.00 0.00 40.92 3.91
5444 6298 0.179018 AAAGTTGGCCGTCTGCTTCT 60.179 50.000 0.00 0.00 40.92 2.85
5445 6299 0.603975 AAGTTGGCCGTCTGCTTCTC 60.604 55.000 0.00 0.00 40.92 2.87
5447 6301 0.603975 GTTGGCCGTCTGCTTCTCTT 60.604 55.000 0.00 0.00 40.92 2.85
5448 6302 0.108585 TTGGCCGTCTGCTTCTCTTT 59.891 50.000 0.00 0.00 40.92 2.52
5449 6303 0.108585 TGGCCGTCTGCTTCTCTTTT 59.891 50.000 0.00 0.00 40.92 2.27
5453 6307 2.550180 GCCGTCTGCTTCTCTTTTCTTT 59.450 45.455 0.00 0.00 36.87 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.321298 TTCTACACGGCTTTCCAGGC 60.321 55.000 0.00 0.00 42.39 4.85
1 2 1.676014 CCTTCTACACGGCTTTCCAGG 60.676 57.143 0.00 0.00 0.00 4.45
2 3 1.676014 CCCTTCTACACGGCTTTCCAG 60.676 57.143 0.00 0.00 0.00 3.86
3 4 0.323629 CCCTTCTACACGGCTTTCCA 59.676 55.000 0.00 0.00 0.00 3.53
4 5 0.611714 TCCCTTCTACACGGCTTTCC 59.388 55.000 0.00 0.00 0.00 3.13
5 6 2.028385 TCTTCCCTTCTACACGGCTTTC 60.028 50.000 0.00 0.00 0.00 2.62
6 7 1.975680 TCTTCCCTTCTACACGGCTTT 59.024 47.619 0.00 0.00 0.00 3.51
7 8 1.275573 GTCTTCCCTTCTACACGGCTT 59.724 52.381 0.00 0.00 0.00 4.35
8 9 0.896226 GTCTTCCCTTCTACACGGCT 59.104 55.000 0.00 0.00 0.00 5.52
9 10 0.896226 AGTCTTCCCTTCTACACGGC 59.104 55.000 0.00 0.00 0.00 5.68
10 11 1.404315 GCAGTCTTCCCTTCTACACGG 60.404 57.143 0.00 0.00 0.00 4.94
11 12 1.546476 AGCAGTCTTCCCTTCTACACG 59.454 52.381 0.00 0.00 0.00 4.49
12 13 3.591023 GAAGCAGTCTTCCCTTCTACAC 58.409 50.000 0.00 0.00 42.18 2.90
30 31 2.135933 ACTTCAAGAAAGCGTCGGAAG 58.864 47.619 17.72 17.72 43.01 3.46
56 57 6.616947 TGGGTATTCGAATTTTGAATGTCAC 58.383 36.000 17.19 13.50 36.74 3.67
57 58 6.825944 TGGGTATTCGAATTTTGAATGTCA 57.174 33.333 17.19 11.94 36.74 3.58
91 92 2.176148 TCCATGCCCATCACTCATTGAT 59.824 45.455 0.00 0.00 46.75 2.57
102 103 1.003182 TTGCCCATTCCATGCCCAT 59.997 52.632 0.00 0.00 0.00 4.00
148 149 5.881443 TCATCACACATGCATGAAACATAGA 59.119 36.000 32.75 18.26 0.00 1.98
319 320 1.351076 CCCCAAAACATTGGCCTTCT 58.649 50.000 3.32 0.00 40.74 2.85
320 321 0.321564 GCCCCAAAACATTGGCCTTC 60.322 55.000 3.32 0.00 40.74 3.46
321 322 1.059006 TGCCCCAAAACATTGGCCTT 61.059 50.000 3.32 0.00 43.35 4.35
322 323 1.461075 TGCCCCAAAACATTGGCCT 60.461 52.632 3.32 0.00 43.35 5.19
323 324 1.302431 GTGCCCCAAAACATTGGCC 60.302 57.895 0.00 0.00 43.35 5.36
324 325 1.302431 GGTGCCCCAAAACATTGGC 60.302 57.895 2.01 0.00 44.27 4.52
335 341 1.917872 TGATGTAAAACTGGTGCCCC 58.082 50.000 0.00 0.00 0.00 5.80
363 369 8.682895 GTTTTAGAGCAGAAGAAATTTTTCGTC 58.317 33.333 9.93 9.93 43.14 4.20
365 371 7.862873 AGGTTTTAGAGCAGAAGAAATTTTTCG 59.137 33.333 0.00 0.00 41.92 3.46
377 384 4.464597 GGAGAGAGAAGGTTTTAGAGCAGA 59.535 45.833 0.00 0.00 0.00 4.26
378 385 4.466015 AGGAGAGAGAAGGTTTTAGAGCAG 59.534 45.833 0.00 0.00 0.00 4.24
382 389 5.646215 AGACAGGAGAGAGAAGGTTTTAGA 58.354 41.667 0.00 0.00 0.00 2.10
385 392 6.749036 TTTAGACAGGAGAGAGAAGGTTTT 57.251 37.500 0.00 0.00 0.00 2.43
474 870 9.187996 GATAGTTCCCACTACTTACTTCTTACT 57.812 37.037 0.00 0.00 38.38 2.24
477 873 6.096564 CGGATAGTTCCCACTACTTACTTCTT 59.903 42.308 0.00 0.00 38.38 2.52
509 905 2.816337 CGTAAGGCCTTCCCCTCAAAAA 60.816 50.000 24.49 0.00 32.93 1.94
525 921 7.766219 TGAAGTTAATAAAGCTAGCCGTAAG 57.234 36.000 12.13 0.00 0.00 2.34
526 922 7.201582 GCTTGAAGTTAATAAAGCTAGCCGTAA 60.202 37.037 12.13 0.23 41.41 3.18
527 923 6.257193 GCTTGAAGTTAATAAAGCTAGCCGTA 59.743 38.462 12.13 4.10 41.41 4.02
528 924 5.064834 GCTTGAAGTTAATAAAGCTAGCCGT 59.935 40.000 12.13 1.49 41.41 5.68
529 925 5.064707 TGCTTGAAGTTAATAAAGCTAGCCG 59.935 40.000 12.13 0.00 44.23 5.52
530 926 6.436843 TGCTTGAAGTTAATAAAGCTAGCC 57.563 37.500 12.13 0.00 44.23 3.93
531 927 8.917415 ATTTGCTTGAAGTTAATAAAGCTAGC 57.083 30.769 6.62 6.62 44.23 3.42
532 928 9.508567 GGATTTGCTTGAAGTTAATAAAGCTAG 57.491 33.333 7.65 0.00 44.23 3.42
533 929 8.181573 CGGATTTGCTTGAAGTTAATAAAGCTA 58.818 33.333 7.65 0.00 44.23 3.32
534 930 7.029563 CGGATTTGCTTGAAGTTAATAAAGCT 58.970 34.615 7.65 0.00 44.23 3.74
535 931 6.237569 GCGGATTTGCTTGAAGTTAATAAAGC 60.238 38.462 0.00 0.00 44.18 3.51
536 932 6.806249 TGCGGATTTGCTTGAAGTTAATAAAG 59.194 34.615 0.00 0.00 35.36 1.85
537 933 6.682746 TGCGGATTTGCTTGAAGTTAATAAA 58.317 32.000 0.00 0.00 35.36 1.40
538 934 6.260870 TGCGGATTTGCTTGAAGTTAATAA 57.739 33.333 0.00 0.00 35.36 1.40
539 935 5.888691 TGCGGATTTGCTTGAAGTTAATA 57.111 34.783 0.00 0.00 35.36 0.98
540 936 4.782019 TGCGGATTTGCTTGAAGTTAAT 57.218 36.364 0.00 0.00 35.36 1.40
541 937 4.037446 ACTTGCGGATTTGCTTGAAGTTAA 59.963 37.500 0.00 0.00 35.36 2.01
542 938 3.568007 ACTTGCGGATTTGCTTGAAGTTA 59.432 39.130 0.00 0.00 35.36 2.24
543 939 2.362077 ACTTGCGGATTTGCTTGAAGTT 59.638 40.909 0.00 0.00 35.36 2.66
544 940 1.956477 ACTTGCGGATTTGCTTGAAGT 59.044 42.857 0.00 0.00 35.36 3.01
545 941 2.712057 ACTTGCGGATTTGCTTGAAG 57.288 45.000 0.00 0.00 35.36 3.02
546 942 4.576216 TTTACTTGCGGATTTGCTTGAA 57.424 36.364 0.00 0.00 35.36 2.69
547 943 4.295051 GTTTTACTTGCGGATTTGCTTGA 58.705 39.130 0.00 0.00 35.36 3.02
548 944 3.428534 GGTTTTACTTGCGGATTTGCTTG 59.571 43.478 0.00 0.00 35.36 4.01
549 945 3.649073 GGTTTTACTTGCGGATTTGCTT 58.351 40.909 0.00 0.00 35.36 3.91
550 946 2.351350 CGGTTTTACTTGCGGATTTGCT 60.351 45.455 0.00 0.00 35.36 3.91
551 947 1.982913 CGGTTTTACTTGCGGATTTGC 59.017 47.619 0.00 0.00 0.00 3.68
552 948 3.546002 TCGGTTTTACTTGCGGATTTG 57.454 42.857 0.00 0.00 0.00 2.32
553 949 4.571372 TTTCGGTTTTACTTGCGGATTT 57.429 36.364 0.00 0.00 0.00 2.17
554 950 4.216687 TCATTTCGGTTTTACTTGCGGATT 59.783 37.500 0.00 0.00 0.00 3.01
555 951 3.754323 TCATTTCGGTTTTACTTGCGGAT 59.246 39.130 0.00 0.00 0.00 4.18
556 952 3.139850 TCATTTCGGTTTTACTTGCGGA 58.860 40.909 0.00 0.00 0.00 5.54
557 953 3.546002 TCATTTCGGTTTTACTTGCGG 57.454 42.857 0.00 0.00 0.00 5.69
558 954 4.973663 AGTTTCATTTCGGTTTTACTTGCG 59.026 37.500 0.00 0.00 0.00 4.85
559 955 6.581166 CCTAGTTTCATTTCGGTTTTACTTGC 59.419 38.462 0.00 0.00 0.00 4.01
560 956 7.081976 CCCTAGTTTCATTTCGGTTTTACTTG 58.918 38.462 0.00 0.00 0.00 3.16
561 957 6.208007 CCCCTAGTTTCATTTCGGTTTTACTT 59.792 38.462 0.00 0.00 0.00 2.24
562 958 5.708697 CCCCTAGTTTCATTTCGGTTTTACT 59.291 40.000 0.00 0.00 0.00 2.24
563 959 5.706833 TCCCCTAGTTTCATTTCGGTTTTAC 59.293 40.000 0.00 0.00 0.00 2.01
564 960 5.878627 TCCCCTAGTTTCATTTCGGTTTTA 58.121 37.500 0.00 0.00 0.00 1.52
565 961 4.732065 TCCCCTAGTTTCATTTCGGTTTT 58.268 39.130 0.00 0.00 0.00 2.43
566 962 4.376225 TCCCCTAGTTTCATTTCGGTTT 57.624 40.909 0.00 0.00 0.00 3.27
567 963 4.376225 TTCCCCTAGTTTCATTTCGGTT 57.624 40.909 0.00 0.00 0.00 4.44
568 964 4.376225 TTTCCCCTAGTTTCATTTCGGT 57.624 40.909 0.00 0.00 0.00 4.69
569 965 5.007682 TCTTTTCCCCTAGTTTCATTTCGG 58.992 41.667 0.00 0.00 0.00 4.30
570 966 6.206829 AGTTCTTTTCCCCTAGTTTCATTTCG 59.793 38.462 0.00 0.00 0.00 3.46
571 967 7.526142 AGTTCTTTTCCCCTAGTTTCATTTC 57.474 36.000 0.00 0.00 0.00 2.17
572 968 9.244292 GATAGTTCTTTTCCCCTAGTTTCATTT 57.756 33.333 0.00 0.00 0.00 2.32
573 969 7.834681 GGATAGTTCTTTTCCCCTAGTTTCATT 59.165 37.037 0.00 0.00 0.00 2.57
574 970 7.347252 GGATAGTTCTTTTCCCCTAGTTTCAT 58.653 38.462 0.00 0.00 0.00 2.57
575 971 6.575649 CGGATAGTTCTTTTCCCCTAGTTTCA 60.576 42.308 0.00 0.00 0.00 2.69
576 972 5.816258 CGGATAGTTCTTTTCCCCTAGTTTC 59.184 44.000 0.00 0.00 0.00 2.78
577 973 5.338953 CCGGATAGTTCTTTTCCCCTAGTTT 60.339 44.000 0.00 0.00 0.00 2.66
578 974 4.163649 CCGGATAGTTCTTTTCCCCTAGTT 59.836 45.833 0.00 0.00 0.00 2.24
579 975 3.710165 CCGGATAGTTCTTTTCCCCTAGT 59.290 47.826 0.00 0.00 0.00 2.57
580 976 3.710165 ACCGGATAGTTCTTTTCCCCTAG 59.290 47.826 9.46 0.00 0.00 3.02
581 977 3.727948 ACCGGATAGTTCTTTTCCCCTA 58.272 45.455 9.46 0.00 0.00 3.53
582 978 2.558974 ACCGGATAGTTCTTTTCCCCT 58.441 47.619 9.46 0.00 0.00 4.79
583 979 3.361281 AACCGGATAGTTCTTTTCCCC 57.639 47.619 9.46 0.00 0.00 4.81
584 980 8.687292 AATATTAACCGGATAGTTCTTTTCCC 57.313 34.615 9.46 0.00 0.00 3.97
589 985 9.765795 CTCAGAAATATTAACCGGATAGTTCTT 57.234 33.333 17.07 0.00 40.43 2.52
590 986 8.368668 CCTCAGAAATATTAACCGGATAGTTCT 58.631 37.037 9.46 13.26 42.06 3.01
591 987 8.365647 TCCTCAGAAATATTAACCGGATAGTTC 58.634 37.037 9.46 11.02 35.45 3.01
592 988 8.258850 TCCTCAGAAATATTAACCGGATAGTT 57.741 34.615 9.46 0.33 0.00 2.24
593 989 7.850935 TCCTCAGAAATATTAACCGGATAGT 57.149 36.000 9.46 0.00 0.00 2.12
594 990 9.555727 TTTTCCTCAGAAATATTAACCGGATAG 57.444 33.333 9.46 0.00 41.55 2.08
595 991 9.555727 CTTTTCCTCAGAAATATTAACCGGATA 57.444 33.333 9.46 0.00 41.55 2.59
596 992 8.272173 TCTTTTCCTCAGAAATATTAACCGGAT 58.728 33.333 9.46 0.00 41.55 4.18
597 993 7.626390 TCTTTTCCTCAGAAATATTAACCGGA 58.374 34.615 9.46 0.00 41.55 5.14
598 994 7.859325 TCTTTTCCTCAGAAATATTAACCGG 57.141 36.000 0.00 0.00 41.55 5.28
599 995 8.947115 AGTTCTTTTCCTCAGAAATATTAACCG 58.053 33.333 0.00 0.00 41.55 4.44
604 1000 9.331282 CGGATAGTTCTTTTCCTCAGAAATATT 57.669 33.333 4.62 0.00 40.11 1.28
605 1001 7.934120 CCGGATAGTTCTTTTCCTCAGAAATAT 59.066 37.037 0.00 3.05 41.79 1.28
606 1002 7.093024 ACCGGATAGTTCTTTTCCTCAGAAATA 60.093 37.037 9.46 0.00 41.55 1.40
607 1003 6.116126 CCGGATAGTTCTTTTCCTCAGAAAT 58.884 40.000 0.00 0.00 41.55 2.17
608 1004 5.012768 ACCGGATAGTTCTTTTCCTCAGAAA 59.987 40.000 9.46 0.00 40.26 2.52
609 1005 4.530946 ACCGGATAGTTCTTTTCCTCAGAA 59.469 41.667 9.46 0.00 0.00 3.02
610 1006 4.094476 ACCGGATAGTTCTTTTCCTCAGA 58.906 43.478 9.46 0.00 0.00 3.27
611 1007 4.081642 TGACCGGATAGTTCTTTTCCTCAG 60.082 45.833 9.46 0.00 0.00 3.35
612 1008 3.835978 TGACCGGATAGTTCTTTTCCTCA 59.164 43.478 9.46 0.00 0.00 3.86
630 1026 1.667724 CGAGACATCTGGCATTTGACC 59.332 52.381 4.07 0.00 0.00 4.02
693 1098 0.764369 ACCCACTGACTGCTCCTTGA 60.764 55.000 0.00 0.00 0.00 3.02
694 1099 0.604780 CACCCACTGACTGCTCCTTG 60.605 60.000 0.00 0.00 0.00 3.61
725 1156 1.154263 CGAGTCTGTCGTCCGTTCC 60.154 63.158 0.00 0.00 44.20 3.62
947 1390 2.363172 GGCCTCTCCGCTCCTTCTT 61.363 63.158 0.00 0.00 0.00 2.52
948 1391 2.762043 GGCCTCTCCGCTCCTTCT 60.762 66.667 0.00 0.00 0.00 2.85
949 1392 2.762043 AGGCCTCTCCGCTCCTTC 60.762 66.667 0.00 0.00 40.77 3.46
1054 1498 3.773154 GAGGGAGGGAGGGAGCCT 61.773 72.222 0.00 0.00 36.03 4.58
1083 1531 1.746322 GCTACTAGGGTTCGAGGCCC 61.746 65.000 16.68 16.68 46.43 5.80
1084 1532 0.756070 AGCTACTAGGGTTCGAGGCC 60.756 60.000 0.00 0.00 0.00 5.19
1085 1533 1.112950 AAGCTACTAGGGTTCGAGGC 58.887 55.000 0.00 0.00 0.00 4.70
1086 1534 3.734293 CGAAAAGCTACTAGGGTTCGAGG 60.734 52.174 0.00 0.00 40.06 4.63
1087 1535 3.436496 CGAAAAGCTACTAGGGTTCGAG 58.564 50.000 0.00 0.00 40.06 4.04
1088 1536 2.165030 CCGAAAAGCTACTAGGGTTCGA 59.835 50.000 5.27 0.00 40.06 3.71
1089 1537 2.094338 ACCGAAAAGCTACTAGGGTTCG 60.094 50.000 0.00 0.00 38.02 3.95
1090 1538 3.606595 ACCGAAAAGCTACTAGGGTTC 57.393 47.619 0.00 0.00 0.00 3.62
1133 1581 3.792053 GAATCAGACGGGCGGCGAT 62.792 63.158 12.98 0.00 0.00 4.58
1423 1871 2.483188 GCTTCCTTCGGTCGGTATGAAT 60.483 50.000 0.00 0.00 0.00 2.57
1509 1957 1.079057 GCTCGGGAAACAGGAGACC 60.079 63.158 0.00 0.00 35.21 3.85
1749 2207 5.049405 AGACACATCAGAAACGAAATGTTCC 60.049 40.000 0.00 0.00 40.84 3.62
1763 2221 5.237996 AGTGTGAATTTGACAGACACATCAG 59.762 40.000 0.00 0.00 42.06 2.90
1821 2279 4.635765 GCTTGGACAGAATATAACTGCACA 59.364 41.667 8.98 6.43 38.74 4.57
1919 2377 3.252400 TGCAGCAAAGGATTAAAATGCG 58.748 40.909 0.00 0.00 41.72 4.73
1931 2389 5.412526 AATTTCACACAAATGCAGCAAAG 57.587 34.783 0.00 0.00 0.00 2.77
2042 2500 6.214191 TGTGAATTCTTGCACCAAAACTAA 57.786 33.333 7.05 0.00 34.19 2.24
2051 2509 6.864685 TCAAATCTTGATGTGAATTCTTGCAC 59.135 34.615 7.05 0.00 34.08 4.57
2169 2627 4.413087 CTGCATGCTTCATTTCAGTCTTC 58.587 43.478 20.33 0.00 0.00 2.87
2734 3192 5.565045 GCAAATAATGTACCAAAACACCGGA 60.565 40.000 9.46 0.00 30.75 5.14
2760 3218 3.588842 CCAGATTATAGAGGGGGCAATCA 59.411 47.826 0.00 0.00 0.00 2.57
2783 3241 2.026822 AGTTCTAGTTGCAGACCATGGG 60.027 50.000 18.09 0.00 0.00 4.00
2789 3247 8.436200 CAGTAAATACAAGTTCTAGTTGCAGAC 58.564 37.037 0.00 0.00 31.85 3.51
2836 3300 9.455847 GAAATGCTTGTTTCCATATTGATACTC 57.544 33.333 0.37 0.00 33.10 2.59
2909 3373 6.133356 TCTTACACCCAGAAAAATTGAACCT 58.867 36.000 0.00 0.00 0.00 3.50
2940 3404 9.846248 CATGTAAAACTTCCTTAATTTCAGAGG 57.154 33.333 0.00 0.00 0.00 3.69
3333 3812 5.231568 GCAAATATTCATGTCAAGCTCAAGC 59.768 40.000 0.00 0.00 42.49 4.01
3334 3813 6.561614 AGCAAATATTCATGTCAAGCTCAAG 58.438 36.000 0.00 0.00 0.00 3.02
3335 3814 6.519679 AGCAAATATTCATGTCAAGCTCAA 57.480 33.333 0.00 0.00 0.00 3.02
3336 3815 6.127810 GAGCAAATATTCATGTCAAGCTCA 57.872 37.500 0.00 0.00 43.84 4.26
3337 3816 6.127810 TGAGCAAATATTCATGTCAAGCTC 57.872 37.500 0.00 0.00 44.45 4.09
3338 3817 6.519679 TTGAGCAAATATTCATGTCAAGCT 57.480 33.333 0.00 0.00 0.00 3.74
3366 3845 8.410141 CACTCCTGTGTAAAATAAAGGAAAACA 58.590 33.333 0.00 0.00 36.62 2.83
3371 3850 6.043938 AGACCACTCCTGTGTAAAATAAAGGA 59.956 38.462 0.00 0.00 42.34 3.36
3372 3851 6.238648 AGACCACTCCTGTGTAAAATAAAGG 58.761 40.000 0.00 0.00 42.34 3.11
3373 3852 6.934645 TGAGACCACTCCTGTGTAAAATAAAG 59.065 38.462 0.00 0.00 42.34 1.85
3621 4100 0.108186 TCCGGTCATCAGCACATGTC 60.108 55.000 0.00 0.00 0.00 3.06
3626 4105 2.096496 CAGATTTTCCGGTCATCAGCAC 59.904 50.000 0.00 0.00 0.00 4.40
3648 4127 6.425210 AGGTAATAGCAACTGCAGATGATA 57.575 37.500 26.40 24.08 45.16 2.15
3843 4326 4.630069 TCATTCAGCGTCTAGGTTAAAAGC 59.370 41.667 0.00 0.00 0.00 3.51
3864 4347 6.364568 TTCTCAGGAGAAATGTCAATCTCA 57.635 37.500 9.20 1.46 43.79 3.27
3952 4435 1.458777 CAGGGGCCATGGCATCATT 60.459 57.895 36.56 17.05 44.11 2.57
3967 4450 3.016736 ACACTCAGGAACAAACAACAGG 58.983 45.455 0.00 0.00 0.00 4.00
3983 4467 3.452627 ACAGATCCAGATACCCAACACTC 59.547 47.826 0.00 0.00 0.00 3.51
3993 4477 5.121105 CAGATGTTGCAACAGATCCAGATA 58.879 41.667 33.44 9.70 43.04 1.98
4078 4562 4.811557 AGTTCCAAAGACAAGAGAAGAACG 59.188 41.667 0.00 0.00 37.89 3.95
4294 4781 9.167311 TCAAGAGATTTCTAGCTTTCCAATTAC 57.833 33.333 0.00 0.00 31.96 1.89
4565 5086 3.253955 GTGTGGCTTACAGCACCG 58.746 61.111 0.00 0.00 44.75 4.94
4825 5355 7.858052 ATGAAAATCGAAACTGCAGTTAAAG 57.142 32.000 31.31 23.32 37.25 1.85
4879 5410 4.700213 GCTATGAGGAAGTGCTACCAAAAA 59.300 41.667 0.00 0.00 0.00 1.94
4884 5415 3.892588 ACTAGCTATGAGGAAGTGCTACC 59.107 47.826 0.00 0.00 35.47 3.18
4885 5416 4.865776 CACTAGCTATGAGGAAGTGCTAC 58.134 47.826 0.00 0.00 35.47 3.58
4911 5447 1.528586 GGATCGATGGTTGATGCTTCG 59.471 52.381 0.54 0.00 32.14 3.79
4916 5452 5.565592 TTCTTTTGGATCGATGGTTGATG 57.434 39.130 0.54 0.00 0.00 3.07
4939 5482 5.493133 TGACAACCATAATTAATCGTGGC 57.507 39.130 15.42 4.25 35.11 5.01
5036 5581 8.967918 TGTTAGCTTGACTAGTATGTGTCTTAT 58.032 33.333 0.00 0.00 34.57 1.73
5037 5582 8.344446 TGTTAGCTTGACTAGTATGTGTCTTA 57.656 34.615 0.00 0.00 34.57 2.10
5047 5592 4.158025 ACGCTACATGTTAGCTTGACTAGT 59.842 41.667 18.72 0.00 38.35 2.57
5054 5599 2.422597 TGCAACGCTACATGTTAGCTT 58.577 42.857 18.72 11.05 38.35 3.74
5077 5622 6.603237 TTATCAACTATGATCAAACCGCAG 57.397 37.500 0.00 0.00 42.75 5.18
5078 5623 8.846943 ATATTATCAACTATGATCAAACCGCA 57.153 30.769 0.00 0.00 42.75 5.69
5106 5651 9.383519 GCCAAGCTATATTATTAACTATGCTCA 57.616 33.333 0.00 0.00 0.00 4.26
5107 5652 9.383519 TGCCAAGCTATATTATTAACTATGCTC 57.616 33.333 0.00 0.00 0.00 4.26
5108 5653 9.911788 ATGCCAAGCTATATTATTAACTATGCT 57.088 29.630 0.00 0.00 0.00 3.79
5109 5654 9.941664 CATGCCAAGCTATATTATTAACTATGC 57.058 33.333 0.00 0.00 0.00 3.14
5121 5666 9.911788 AGCTATAAATTACATGCCAAGCTATAT 57.088 29.630 0.00 0.00 36.10 0.86
5123 5668 9.739276 TTAGCTATAAATTACATGCCAAGCTAT 57.261 29.630 0.00 0.00 39.15 2.97
5124 5669 9.739276 ATTAGCTATAAATTACATGCCAAGCTA 57.261 29.630 0.00 0.00 38.61 3.32
5125 5670 8.517878 CATTAGCTATAAATTACATGCCAAGCT 58.482 33.333 0.00 0.00 40.61 3.74
5126 5671 8.299570 ACATTAGCTATAAATTACATGCCAAGC 58.700 33.333 0.00 0.00 0.00 4.01
5161 5706 6.089016 CGTCTGCGTCTCTATTCTGTTAAAAA 59.911 38.462 0.00 0.00 0.00 1.94
5162 5707 5.571741 CGTCTGCGTCTCTATTCTGTTAAAA 59.428 40.000 0.00 0.00 0.00 1.52
5163 5708 5.093457 CGTCTGCGTCTCTATTCTGTTAAA 58.907 41.667 0.00 0.00 0.00 1.52
5165 5710 3.937079 TCGTCTGCGTCTCTATTCTGTTA 59.063 43.478 0.00 0.00 39.49 2.41
5166 5711 2.747989 TCGTCTGCGTCTCTATTCTGTT 59.252 45.455 0.00 0.00 39.49 3.16
5170 5715 3.696898 ACATTCGTCTGCGTCTCTATTC 58.303 45.455 0.00 0.00 39.49 1.75
5171 5716 3.784701 ACATTCGTCTGCGTCTCTATT 57.215 42.857 0.00 0.00 39.49 1.73
5172 5717 3.626217 TGTACATTCGTCTGCGTCTCTAT 59.374 43.478 0.00 0.00 39.49 1.98
5173 5718 3.004862 TGTACATTCGTCTGCGTCTCTA 58.995 45.455 0.00 0.00 39.49 2.43
5174 5719 1.810755 TGTACATTCGTCTGCGTCTCT 59.189 47.619 0.00 0.00 39.49 3.10
5175 5720 1.912110 GTGTACATTCGTCTGCGTCTC 59.088 52.381 0.00 0.00 39.49 3.36
5176 5721 1.540267 AGTGTACATTCGTCTGCGTCT 59.460 47.619 0.00 0.00 39.49 4.18
5177 5722 1.978542 AGTGTACATTCGTCTGCGTC 58.021 50.000 0.00 0.00 39.49 5.19
5178 5723 2.433868 AAGTGTACATTCGTCTGCGT 57.566 45.000 0.00 0.00 39.49 5.24
5179 5724 3.486108 GGATAAGTGTACATTCGTCTGCG 59.514 47.826 0.00 0.00 39.92 5.18
5180 5725 4.683832 AGGATAAGTGTACATTCGTCTGC 58.316 43.478 0.00 0.00 0.00 4.26
5181 5726 9.961265 TTATAAGGATAAGTGTACATTCGTCTG 57.039 33.333 0.00 0.00 0.00 3.51
5184 5729 9.241317 CGTTTATAAGGATAAGTGTACATTCGT 57.759 33.333 0.00 0.00 0.00 3.85
5185 5730 8.212495 GCGTTTATAAGGATAAGTGTACATTCG 58.788 37.037 0.00 0.00 0.00 3.34
5186 5731 9.037737 TGCGTTTATAAGGATAAGTGTACATTC 57.962 33.333 0.00 0.00 0.00 2.67
5187 5732 8.951787 TGCGTTTATAAGGATAAGTGTACATT 57.048 30.769 0.00 0.00 0.00 2.71
5188 5733 8.988934 CATGCGTTTATAAGGATAAGTGTACAT 58.011 33.333 0.00 0.00 0.00 2.29
5189 5734 7.982919 ACATGCGTTTATAAGGATAAGTGTACA 59.017 33.333 0.00 0.00 0.00 2.90
5190 5735 8.361592 ACATGCGTTTATAAGGATAAGTGTAC 57.638 34.615 0.00 0.00 0.00 2.90
5191 5736 9.467258 GTACATGCGTTTATAAGGATAAGTGTA 57.533 33.333 0.00 0.00 0.00 2.90
5192 5737 7.168637 CGTACATGCGTTTATAAGGATAAGTGT 59.831 37.037 0.00 0.00 0.00 3.55
5193 5738 7.499046 CGTACATGCGTTTATAAGGATAAGTG 58.501 38.462 0.00 0.00 0.00 3.16
5194 5739 6.145048 GCGTACATGCGTTTATAAGGATAAGT 59.855 38.462 0.00 0.00 0.00 2.24
5195 5740 6.144886 TGCGTACATGCGTTTATAAGGATAAG 59.855 38.462 0.00 0.00 37.81 1.73
5196 5741 5.984323 TGCGTACATGCGTTTATAAGGATAA 59.016 36.000 0.00 0.00 37.81 1.75
5197 5742 5.403166 GTGCGTACATGCGTTTATAAGGATA 59.597 40.000 0.00 0.00 37.81 2.59
5198 5743 4.210537 GTGCGTACATGCGTTTATAAGGAT 59.789 41.667 0.00 0.00 37.81 3.24
5199 5744 3.552699 GTGCGTACATGCGTTTATAAGGA 59.447 43.478 0.00 0.00 37.81 3.36
5200 5745 3.307512 TGTGCGTACATGCGTTTATAAGG 59.692 43.478 0.82 0.00 37.81 2.69
5201 5746 4.260670 GTGTGCGTACATGCGTTTATAAG 58.739 43.478 10.21 0.00 39.39 1.73
5202 5747 3.062369 GGTGTGCGTACATGCGTTTATAA 59.938 43.478 10.21 0.00 39.39 0.98
5203 5748 2.604011 GGTGTGCGTACATGCGTTTATA 59.396 45.455 10.21 0.00 39.39 0.98
5204 5749 1.395608 GGTGTGCGTACATGCGTTTAT 59.604 47.619 10.21 0.00 39.39 1.40
5205 5750 0.791422 GGTGTGCGTACATGCGTTTA 59.209 50.000 10.21 0.00 39.39 2.01
5206 5751 0.882927 AGGTGTGCGTACATGCGTTT 60.883 50.000 10.21 0.00 39.39 3.60
5207 5752 0.882927 AAGGTGTGCGTACATGCGTT 60.883 50.000 10.21 3.04 39.39 4.84
5208 5753 0.038067 TAAGGTGTGCGTACATGCGT 60.038 50.000 10.21 0.00 39.39 5.24
5209 5754 1.257936 GATAAGGTGTGCGTACATGCG 59.742 52.381 10.21 0.00 39.39 4.73
5210 5755 2.550978 AGATAAGGTGTGCGTACATGC 58.449 47.619 10.21 0.00 39.39 4.06
5211 5756 6.478673 TCATAAAGATAAGGTGTGCGTACATG 59.521 38.462 10.21 0.00 39.39 3.21
5212 5757 6.578944 TCATAAAGATAAGGTGTGCGTACAT 58.421 36.000 10.21 0.00 39.39 2.29
5213 5758 5.968254 TCATAAAGATAAGGTGTGCGTACA 58.032 37.500 0.82 0.82 0.00 2.90
5214 5759 6.040878 ACTCATAAAGATAAGGTGTGCGTAC 58.959 40.000 0.00 0.00 0.00 3.67
5217 5762 7.148641 AGATACTCATAAAGATAAGGTGTGCG 58.851 38.462 0.00 0.00 0.00 5.34
5238 5783 6.327279 TGTCGACTCAGTCTTTTGAAGATA 57.673 37.500 17.92 0.00 40.18 1.98
5240 5785 4.649088 TGTCGACTCAGTCTTTTGAAGA 57.351 40.909 17.92 0.00 34.51 2.87
5247 5792 7.323420 TCAAAATGATATGTCGACTCAGTCTT 58.677 34.615 17.92 6.31 0.00 3.01
5248 5793 6.867550 TCAAAATGATATGTCGACTCAGTCT 58.132 36.000 17.92 0.00 0.00 3.24
5250 5795 6.867550 TCTCAAAATGATATGTCGACTCAGT 58.132 36.000 17.92 8.74 0.00 3.41
5251 5796 7.943413 ATCTCAAAATGATATGTCGACTCAG 57.057 36.000 17.92 0.98 0.00 3.35
5252 5797 7.254556 GCAATCTCAAAATGATATGTCGACTCA 60.255 37.037 17.92 12.65 0.00 3.41
5254 5799 6.539826 TGCAATCTCAAAATGATATGTCGACT 59.460 34.615 17.92 4.95 0.00 4.18
5255 5800 6.630443 GTGCAATCTCAAAATGATATGTCGAC 59.370 38.462 9.11 9.11 0.00 4.20
5256 5801 6.238456 GGTGCAATCTCAAAATGATATGTCGA 60.238 38.462 0.00 0.00 0.00 4.20
5257 5802 5.911280 GGTGCAATCTCAAAATGATATGTCG 59.089 40.000 0.00 0.00 0.00 4.35
5260 5805 6.566141 TGTGGTGCAATCTCAAAATGATATG 58.434 36.000 0.00 0.00 0.00 1.78
5264 5809 4.933505 TTGTGGTGCAATCTCAAAATGA 57.066 36.364 0.00 0.00 31.07 2.57
5265 5810 5.291178 TCTTTGTGGTGCAATCTCAAAATG 58.709 37.500 14.91 8.30 36.89 2.32
5266 5811 5.534207 TCTTTGTGGTGCAATCTCAAAAT 57.466 34.783 14.91 0.00 36.89 1.82
5267 5812 4.998671 TCTTTGTGGTGCAATCTCAAAA 57.001 36.364 14.91 1.39 36.89 2.44
5269 5814 3.243035 CGTTCTTTGTGGTGCAATCTCAA 60.243 43.478 0.00 0.00 36.89 3.02
5270 5815 2.290367 CGTTCTTTGTGGTGCAATCTCA 59.710 45.455 0.00 0.00 36.89 3.27
5273 5818 2.774439 ACGTTCTTTGTGGTGCAATC 57.226 45.000 0.00 0.00 36.89 2.67
5274 5819 3.243267 GGTTACGTTCTTTGTGGTGCAAT 60.243 43.478 0.00 0.00 36.89 3.56
5275 5820 2.097791 GGTTACGTTCTTTGTGGTGCAA 59.902 45.455 0.00 0.00 34.87 4.08
5278 5823 3.813166 AGATGGTTACGTTCTTTGTGGTG 59.187 43.478 0.00 0.00 0.00 4.17
5279 5824 3.813166 CAGATGGTTACGTTCTTTGTGGT 59.187 43.478 0.00 0.00 0.00 4.16
5280 5825 4.062293 TCAGATGGTTACGTTCTTTGTGG 58.938 43.478 0.00 0.00 0.00 4.17
5282 5827 3.746492 GCTCAGATGGTTACGTTCTTTGT 59.254 43.478 0.00 0.00 0.00 2.83
5283 5828 3.997021 AGCTCAGATGGTTACGTTCTTTG 59.003 43.478 0.00 0.00 0.00 2.77
5284 5829 4.273148 AGCTCAGATGGTTACGTTCTTT 57.727 40.909 0.00 0.00 0.00 2.52
5285 5830 3.963428 AGCTCAGATGGTTACGTTCTT 57.037 42.857 0.00 0.00 0.00 2.52
5287 5832 6.074544 AGTATAGCTCAGATGGTTACGTTC 57.925 41.667 0.00 0.00 0.00 3.95
5301 5887 5.195001 AGCTAGCAAACTGAGTATAGCTC 57.805 43.478 18.83 1.92 41.48 4.09
5308 5894 7.439655 GCTATTACATTAGCTAGCAAACTGAGT 59.560 37.037 18.83 8.26 41.15 3.41
5327 5913 9.790389 CCAACTACTATACATGCTAGCTATTAC 57.210 37.037 17.23 0.00 0.00 1.89
5387 6241 9.793252 CCATAAGGTTTGTAAGAATGAAAGATG 57.207 33.333 0.00 0.00 0.00 2.90
5396 6250 4.569015 GGGCTCCCATAAGGTTTGTAAGAA 60.569 45.833 0.00 0.00 36.75 2.52
5400 6254 1.210967 CGGGCTCCCATAAGGTTTGTA 59.789 52.381 5.70 0.00 36.75 2.41
5402 6256 0.034477 ACGGGCTCCCATAAGGTTTG 60.034 55.000 5.70 0.00 36.75 2.93
5404 6258 1.607612 CACGGGCTCCCATAAGGTT 59.392 57.895 5.70 0.00 36.75 3.50
5406 6260 2.203209 GCACGGGCTCCCATAAGG 60.203 66.667 0.00 0.00 36.96 2.69
5417 6271 2.686816 CGGCCAACTTTAGCACGGG 61.687 63.158 2.24 0.00 0.00 5.28
5419 6273 0.949105 AGACGGCCAACTTTAGCACG 60.949 55.000 2.24 0.00 0.00 5.34
5420 6274 0.517316 CAGACGGCCAACTTTAGCAC 59.483 55.000 2.24 0.00 0.00 4.40
5421 6275 1.234615 GCAGACGGCCAACTTTAGCA 61.235 55.000 2.24 0.00 36.11 3.49
5422 6276 0.955919 AGCAGACGGCCAACTTTAGC 60.956 55.000 2.24 1.25 46.50 3.09
5423 6277 1.464997 GAAGCAGACGGCCAACTTTAG 59.535 52.381 2.24 0.00 46.50 1.85
5424 6278 1.071699 AGAAGCAGACGGCCAACTTTA 59.928 47.619 2.24 0.00 46.50 1.85
5427 6281 1.004440 GAGAAGCAGACGGCCAACT 60.004 57.895 2.24 0.00 46.50 3.16
5428 6282 0.603975 AAGAGAAGCAGACGGCCAAC 60.604 55.000 2.24 0.00 46.50 3.77
5429 6283 0.108585 AAAGAGAAGCAGACGGCCAA 59.891 50.000 2.24 0.00 46.50 4.52
5430 6284 0.108585 AAAAGAGAAGCAGACGGCCA 59.891 50.000 2.24 0.00 46.50 5.36
5432 6286 1.802069 AGAAAAGAGAAGCAGACGGC 58.198 50.000 0.00 0.00 45.30 5.68
5433 6287 4.820284 AAAAGAAAAGAGAAGCAGACGG 57.180 40.909 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.