Multiple sequence alignment - TraesCS6D01G081100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G081100 chr6D 100.000 6694 0 0 1 6694 46852342 46845649 0.000000e+00 12362.0
1 TraesCS6D01G081100 chr6D 94.126 715 26 4 4998 5705 46627787 46627082 0.000000e+00 1074.0
2 TraesCS6D01G081100 chr6D 88.336 583 43 15 2203 2784 46708957 46708399 0.000000e+00 676.0
3 TraesCS6D01G081100 chr6D 91.436 397 30 2 4578 4971 46681340 46680945 5.900000e-150 542.0
4 TraesCS6D01G081100 chr6D 89.870 385 27 3 4185 4568 46708386 46708013 1.010000e-132 484.0
5 TraesCS6D01G081100 chr6D 85.169 472 25 13 6223 6694 46626680 46626254 6.160000e-120 442.0
6 TraesCS6D01G081100 chr6D 86.761 355 22 7 5356 5704 46839745 46839410 8.200000e-99 372.0
7 TraesCS6D01G081100 chr6D 84.615 325 31 10 6381 6694 46813882 46813566 8.430000e-79 305.0
8 TraesCS6D01G081100 chr6A 93.214 2284 91 34 3590 5849 60432903 60430660 0.000000e+00 3301.0
9 TraesCS6D01G081100 chr6A 96.114 1364 51 2 2237 3599 60436160 60434798 0.000000e+00 2224.0
10 TraesCS6D01G081100 chr6A 93.047 1280 56 18 884 2145 60437766 60436502 0.000000e+00 1840.0
11 TraesCS6D01G081100 chr6A 85.194 412 29 15 5897 6280 60430660 60430253 1.750000e-105 394.0
12 TraesCS6D01G081100 chr6A 90.000 280 27 1 5425 5704 60380772 60380494 1.770000e-95 361.0
13 TraesCS6D01G081100 chr6A 93.976 83 5 0 6597 6679 60429526 60429444 7.050000e-25 126.0
14 TraesCS6D01G081100 chr6A 95.238 42 2 0 2159 2200 60436201 60436160 4.330000e-07 67.6
15 TraesCS6D01G081100 chr6B 92.728 2049 101 19 3762 5787 115701714 115699691 0.000000e+00 2915.0
16 TraesCS6D01G081100 chr6B 93.292 1759 82 17 1982 3718 115703461 115701717 0.000000e+00 2562.0
17 TraesCS6D01G081100 chr6B 90.698 903 61 18 894 1788 115704350 115703463 0.000000e+00 1181.0
18 TraesCS6D01G081100 chr6B 84.192 873 94 24 1052 1918 170439234 170438400 0.000000e+00 808.0
19 TraesCS6D01G081100 chr6B 84.023 870 90 30 1052 1918 702082861 702082038 0.000000e+00 791.0
20 TraesCS6D01G081100 chr6B 87.805 656 45 17 5169 5795 115575033 115574384 0.000000e+00 736.0
21 TraesCS6D01G081100 chr6B 87.151 537 61 7 1383 1918 269890246 269889717 2.670000e-168 603.0
22 TraesCS6D01G081100 chr6B 84.087 553 65 8 1363 1915 81446781 81446252 4.630000e-141 512.0
23 TraesCS6D01G081100 chr6B 88.435 441 17 18 6261 6694 115573812 115573399 1.000000e-137 501.0
24 TraesCS6D01G081100 chr6B 89.717 389 25 6 6308 6694 115699053 115698678 3.630000e-132 483.0
25 TraesCS6D01G081100 chr6B 79.386 684 121 16 14 684 581915377 581914701 1.310000e-126 464.0
26 TraesCS6D01G081100 chr6B 87.385 325 28 10 5960 6274 115574239 115573918 1.770000e-95 361.0
27 TraesCS6D01G081100 chr6B 93.023 215 11 4 6054 6267 115337746 115337535 1.810000e-80 311.0
28 TraesCS6D01G081100 chr6B 92.558 215 12 4 6054 6267 115338571 115338360 8.430000e-79 305.0
29 TraesCS6D01G081100 chr6B 92.925 212 10 5 6054 6265 115086315 115086109 3.030000e-78 303.0
30 TraesCS6D01G081100 chr6B 92.093 215 13 4 6054 6267 115297935 115297724 3.920000e-77 300.0
31 TraesCS6D01G081100 chr6B 91.628 215 14 4 6054 6267 115095012 115094801 1.830000e-75 294.0
32 TraesCS6D01G081100 chr6B 91.628 215 14 4 6054 6267 115104084 115103873 1.830000e-75 294.0
33 TraesCS6D01G081100 chr6B 91.628 215 14 4 6054 6267 115295479 115295268 1.830000e-75 294.0
34 TraesCS6D01G081100 chr6B 90.426 188 16 2 5429 5615 115297499 115297313 5.180000e-61 246.0
35 TraesCS6D01G081100 chr6B 88.021 192 21 2 5425 5615 115295870 115295680 6.750000e-55 226.0
36 TraesCS6D01G081100 chr6B 86.458 192 24 2 5425 5615 115110246 115110056 6.800000e-50 209.0
37 TraesCS6D01G081100 chr6B 85.938 192 24 3 5425 5615 115105299 115105110 1.140000e-47 202.0
38 TraesCS6D01G081100 chr5B 85.731 869 81 23 1052 1918 671492799 671491972 0.000000e+00 878.0
39 TraesCS6D01G081100 chr2B 85.155 869 90 21 1052 1915 331894668 331895502 0.000000e+00 854.0
40 TraesCS6D01G081100 chr2B 84.695 869 93 21 1052 1915 325390369 325391202 0.000000e+00 832.0
41 TraesCS6D01G081100 chr2B 86.895 351 26 14 1052 1394 523683772 523684110 6.340000e-100 375.0
42 TraesCS6D01G081100 chr3B 84.977 872 88 21 1052 1918 688030284 688029451 0.000000e+00 845.0
43 TraesCS6D01G081100 chr3B 78.417 695 125 18 1 678 731534062 731533376 4.800000e-116 429.0
44 TraesCS6D01G081100 chr4A 85.299 653 58 20 1052 1699 649062343 649062962 2.040000e-179 640.0
45 TraesCS6D01G081100 chr3D 81.250 688 116 8 1 676 466732581 466733267 1.640000e-150 544.0
46 TraesCS6D01G081100 chr3D 79.565 690 125 14 14 691 174884893 174884208 4.700000e-131 479.0
47 TraesCS6D01G081100 chr3D 85.915 71 10 0 686 756 511718305 511718375 7.200000e-10 76.8
48 TraesCS6D01G081100 chr1D 79.429 700 127 16 1 688 389099550 389098856 4.700000e-131 479.0
49 TraesCS6D01G081100 chr1D 79.786 653 110 16 22 657 95444829 95445476 7.910000e-124 455.0
50 TraesCS6D01G081100 chr7A 79.433 705 120 16 1 685 217502311 217503010 6.070000e-130 475.0
51 TraesCS6D01G081100 chr7A 79.286 700 130 12 2 688 532948850 532948153 6.070000e-130 475.0
52 TraesCS6D01G081100 chr3A 78.351 679 134 9 22 688 67946919 67946242 1.730000e-115 427.0
53 TraesCS6D01G081100 chr7B 88.166 169 13 5 6316 6482 744185844 744185681 1.900000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G081100 chr6D 46845649 46852342 6693 True 12362.000000 12362 100.000000 1 6694 1 chr6D.!!$R4 6693
1 TraesCS6D01G081100 chr6D 46626254 46627787 1533 True 758.000000 1074 89.647500 4998 6694 2 chr6D.!!$R5 1696
2 TraesCS6D01G081100 chr6D 46708013 46708957 944 True 580.000000 676 89.103000 2203 4568 2 chr6D.!!$R6 2365
3 TraesCS6D01G081100 chr6A 60429444 60437766 8322 True 1325.433333 3301 92.797167 884 6679 6 chr6A.!!$R2 5795
4 TraesCS6D01G081100 chr6B 115698678 115704350 5672 True 1785.250000 2915 91.608750 894 6694 4 chr6B.!!$R13 5800
5 TraesCS6D01G081100 chr6B 170438400 170439234 834 True 808.000000 808 84.192000 1052 1918 1 chr6B.!!$R5 866
6 TraesCS6D01G081100 chr6B 702082038 702082861 823 True 791.000000 791 84.023000 1052 1918 1 chr6B.!!$R8 866
7 TraesCS6D01G081100 chr6B 269889717 269890246 529 True 603.000000 603 87.151000 1383 1918 1 chr6B.!!$R6 535
8 TraesCS6D01G081100 chr6B 115573399 115575033 1634 True 532.666667 736 87.875000 5169 6694 3 chr6B.!!$R12 1525
9 TraesCS6D01G081100 chr6B 81446252 81446781 529 True 512.000000 512 84.087000 1363 1915 1 chr6B.!!$R1 552
10 TraesCS6D01G081100 chr6B 581914701 581915377 676 True 464.000000 464 79.386000 14 684 1 chr6B.!!$R7 670
11 TraesCS6D01G081100 chr6B 115337535 115338571 1036 True 308.000000 311 92.790500 6054 6267 2 chr6B.!!$R11 213
12 TraesCS6D01G081100 chr6B 115295268 115297935 2667 True 266.500000 300 90.542000 5425 6267 4 chr6B.!!$R10 842
13 TraesCS6D01G081100 chr6B 115103873 115105299 1426 True 248.000000 294 88.783000 5425 6267 2 chr6B.!!$R9 842
14 TraesCS6D01G081100 chr5B 671491972 671492799 827 True 878.000000 878 85.731000 1052 1918 1 chr5B.!!$R1 866
15 TraesCS6D01G081100 chr2B 331894668 331895502 834 False 854.000000 854 85.155000 1052 1915 1 chr2B.!!$F2 863
16 TraesCS6D01G081100 chr2B 325390369 325391202 833 False 832.000000 832 84.695000 1052 1915 1 chr2B.!!$F1 863
17 TraesCS6D01G081100 chr3B 688029451 688030284 833 True 845.000000 845 84.977000 1052 1918 1 chr3B.!!$R1 866
18 TraesCS6D01G081100 chr3B 731533376 731534062 686 True 429.000000 429 78.417000 1 678 1 chr3B.!!$R2 677
19 TraesCS6D01G081100 chr4A 649062343 649062962 619 False 640.000000 640 85.299000 1052 1699 1 chr4A.!!$F1 647
20 TraesCS6D01G081100 chr3D 466732581 466733267 686 False 544.000000 544 81.250000 1 676 1 chr3D.!!$F1 675
21 TraesCS6D01G081100 chr3D 174884208 174884893 685 True 479.000000 479 79.565000 14 691 1 chr3D.!!$R1 677
22 TraesCS6D01G081100 chr1D 389098856 389099550 694 True 479.000000 479 79.429000 1 688 1 chr1D.!!$R1 687
23 TraesCS6D01G081100 chr1D 95444829 95445476 647 False 455.000000 455 79.786000 22 657 1 chr1D.!!$F1 635
24 TraesCS6D01G081100 chr7A 217502311 217503010 699 False 475.000000 475 79.433000 1 685 1 chr7A.!!$F1 684
25 TraesCS6D01G081100 chr7A 532948153 532948850 697 True 475.000000 475 79.286000 2 688 1 chr7A.!!$R1 686
26 TraesCS6D01G081100 chr3A 67946242 67946919 677 True 427.000000 427 78.351000 22 688 1 chr3A.!!$R1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 875 0.031857 CCGGCTGTAGATGCTCTGAG 59.968 60.000 0.00 0.00 0.00 3.35 F
1729 1803 0.110056 CACGCCTTTGTCTGACATGC 60.110 55.000 11.86 13.19 0.00 4.06 F
1921 1997 0.788995 CAGCGAACTTCAGAGTGCAG 59.211 55.000 0.00 0.00 35.91 4.41 F
2223 2588 0.897863 TGGGTTATTGCACCTGCCAC 60.898 55.000 0.00 0.00 41.18 5.01 F
2295 2663 2.028112 TGCTGCCTAACACTTAGTCAGG 60.028 50.000 0.00 1.09 39.10 3.86 F
2434 2802 2.429971 TGCTGTTGCAGGTTTGAATTGA 59.570 40.909 0.00 0.00 45.31 2.57 F
2658 3029 2.517959 ACCTTTGCTTTGCTGCAGATA 58.482 42.857 20.43 1.74 44.27 1.98 F
4478 6774 2.645838 AGTCAGAAAGCAAGAAGGCA 57.354 45.000 0.00 0.00 35.83 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 2018 1.002792 GTGCAGGAACAAAACTCGTCC 60.003 52.381 0.00 0.00 0.00 4.79 R
2845 3216 1.230324 GGCACTTGAGACTTGACCAC 58.770 55.000 0.00 0.00 0.00 4.16 R
3824 6112 3.569701 GGGTTGGATATCATTCATGCGTT 59.430 43.478 4.83 0.00 0.00 4.84 R
4161 6455 2.286365 TGATCAAACCACAAGGACCC 57.714 50.000 0.00 0.00 38.69 4.46 R
4318 6614 8.729805 AAAACTTGATCAGCAAAATAAAACCA 57.270 26.923 0.00 0.00 35.74 3.67 R
4329 6625 4.458989 AGGCGATTTAAAACTTGATCAGCA 59.541 37.500 0.00 0.00 0.00 4.41 R
4506 6802 1.109323 AGCACCTCCACCTTTTGCAC 61.109 55.000 0.00 0.00 35.57 4.57 R
5977 8448 0.395173 AACAGGCGACCAGGTTTGTT 60.395 50.000 0.00 0.29 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 115 2.561569 CATTGGTAAGATGGTCCGGAC 58.438 52.381 27.04 27.04 0.00 4.79
126 135 1.537776 CGAGGAAGAGCACATGCCTAG 60.538 57.143 0.00 0.00 43.38 3.02
131 140 1.118838 AGAGCACATGCCTAGAGACC 58.881 55.000 0.00 0.00 43.38 3.85
134 143 0.807667 GCACATGCCTAGAGACCACG 60.808 60.000 0.00 0.00 34.31 4.94
150 159 4.364817 CGGTCAAGTTTGCCCGTA 57.635 55.556 6.20 0.00 43.99 4.02
185 194 4.509600 GTGTTTGGAGCAGAGTATATGAGC 59.490 45.833 0.00 0.00 0.00 4.26
225 234 7.359598 CGGATACAGAAATGTTGCTAGCTATTC 60.360 40.741 17.23 9.34 0.00 1.75
341 357 2.439507 ACCAAAGAGACCGCCATCATAT 59.560 45.455 0.00 0.00 0.00 1.78
399 415 4.828939 ACATGCTTTCTTTGGAATGTCTGA 59.171 37.500 0.00 0.00 0.00 3.27
434 450 6.183360 CGACATTAATGTGCTTCAGTGATCTT 60.183 38.462 25.42 0.00 41.95 2.40
461 477 3.323751 TTAGGAGACTTTGTAACGGGC 57.676 47.619 0.00 0.00 43.67 6.13
480 496 3.808218 AACCACCGCCATGCAACCT 62.808 57.895 0.00 0.00 0.00 3.50
481 497 2.045438 CCACCGCCATGCAACCTA 60.045 61.111 0.00 0.00 0.00 3.08
527 544 2.849943 TGGGGTACTATCTTGCCAATGT 59.150 45.455 0.00 0.00 0.00 2.71
552 572 2.172483 ATCCTCACTGAGCGGCGTTT 62.172 55.000 9.37 0.00 0.00 3.60
657 678 2.099431 CAGAGTGCTCCAAGCTCGC 61.099 63.158 0.11 0.00 42.97 5.03
660 681 2.047844 GTGCTCCAAGCTCGCTGA 60.048 61.111 0.11 0.00 42.97 4.26
665 686 1.074752 CTCCAAGCTCGCTGAAGAAC 58.925 55.000 0.00 0.00 0.00 3.01
685 706 0.675083 TGTTTGTGGAGCTGCAATGG 59.325 50.000 10.44 0.00 0.00 3.16
697 718 3.020102 GCAATGGTGCGTCATTCAC 57.980 52.632 1.93 0.00 41.93 3.18
710 731 5.311016 CGTCATTCACGTGTATAATGGAC 57.689 43.478 21.49 16.30 44.07 4.02
712 733 5.462068 CGTCATTCACGTGTATAATGGACAT 59.538 40.000 21.49 0.00 44.07 3.06
713 734 6.562086 CGTCATTCACGTGTATAATGGACATG 60.562 42.308 21.49 9.58 44.07 3.21
714 735 5.236263 TCATTCACGTGTATAATGGACATGC 59.764 40.000 21.49 0.00 37.33 4.06
715 736 4.130286 TCACGTGTATAATGGACATGCA 57.870 40.909 16.51 0.00 37.33 3.96
717 738 5.848406 TCACGTGTATAATGGACATGCATA 58.152 37.500 16.51 0.00 37.33 3.14
719 740 5.120674 CACGTGTATAATGGACATGCATAGG 59.879 44.000 7.58 0.00 37.33 2.57
721 742 5.700832 CGTGTATAATGGACATGCATAGGTT 59.299 40.000 0.00 0.00 0.00 3.50
736 757 5.653507 GCATAGGTTTGCATGAATTTGAGA 58.346 37.500 0.00 0.00 42.31 3.27
737 758 5.747197 GCATAGGTTTGCATGAATTTGAGAG 59.253 40.000 0.00 0.00 42.31 3.20
738 759 6.626623 GCATAGGTTTGCATGAATTTGAGAGT 60.627 38.462 0.00 0.00 42.31 3.24
739 760 5.796424 AGGTTTGCATGAATTTGAGAGTT 57.204 34.783 0.00 0.00 0.00 3.01
742 763 5.178067 GGTTTGCATGAATTTGAGAGTTTGG 59.822 40.000 0.00 0.00 0.00 3.28
743 764 5.787953 TTGCATGAATTTGAGAGTTTGGA 57.212 34.783 0.00 0.00 0.00 3.53
745 766 6.349243 TGCATGAATTTGAGAGTTTGGATT 57.651 33.333 0.00 0.00 0.00 3.01
746 767 6.761312 TGCATGAATTTGAGAGTTTGGATTT 58.239 32.000 0.00 0.00 0.00 2.17
747 768 6.647481 TGCATGAATTTGAGAGTTTGGATTTG 59.353 34.615 0.00 0.00 0.00 2.32
748 769 6.869913 GCATGAATTTGAGAGTTTGGATTTGA 59.130 34.615 0.00 0.00 0.00 2.69
749 770 7.063074 GCATGAATTTGAGAGTTTGGATTTGAG 59.937 37.037 0.00 0.00 0.00 3.02
750 771 7.822161 TGAATTTGAGAGTTTGGATTTGAGA 57.178 32.000 0.00 0.00 0.00 3.27
751 772 8.413309 TGAATTTGAGAGTTTGGATTTGAGAT 57.587 30.769 0.00 0.00 0.00 2.75
752 773 8.301720 TGAATTTGAGAGTTTGGATTTGAGATG 58.698 33.333 0.00 0.00 0.00 2.90
754 775 6.564709 TTGAGAGTTTGGATTTGAGATGTG 57.435 37.500 0.00 0.00 0.00 3.21
755 776 5.624159 TGAGAGTTTGGATTTGAGATGTGT 58.376 37.500 0.00 0.00 0.00 3.72
757 778 5.624159 AGAGTTTGGATTTGAGATGTGTGA 58.376 37.500 0.00 0.00 0.00 3.58
758 779 5.471456 AGAGTTTGGATTTGAGATGTGTGAC 59.529 40.000 0.00 0.00 0.00 3.67
759 780 5.380043 AGTTTGGATTTGAGATGTGTGACT 58.620 37.500 0.00 0.00 0.00 3.41
761 782 4.356405 TGGATTTGAGATGTGTGACTGT 57.644 40.909 0.00 0.00 0.00 3.55
762 783 4.318332 TGGATTTGAGATGTGTGACTGTC 58.682 43.478 0.00 0.00 0.00 3.51
764 785 4.756642 GGATTTGAGATGTGTGACTGTCAA 59.243 41.667 12.81 0.00 0.00 3.18
765 786 5.239306 GGATTTGAGATGTGTGACTGTCAAA 59.761 40.000 12.81 3.89 38.05 2.69
766 787 5.484173 TTTGAGATGTGTGACTGTCAAAC 57.516 39.130 21.54 21.54 35.19 2.93
773 794 5.833406 TGTGTGACTGTCAAACATGATTT 57.167 34.783 25.88 0.00 39.54 2.17
774 795 6.934048 TGTGTGACTGTCAAACATGATTTA 57.066 33.333 25.88 5.47 39.54 1.40
776 797 7.361894 TGTGTGACTGTCAAACATGATTTATG 58.638 34.615 25.88 0.00 39.54 1.90
777 798 7.228308 TGTGTGACTGTCAAACATGATTTATGA 59.772 33.333 25.88 3.45 39.54 2.15
778 799 7.747799 GTGTGACTGTCAAACATGATTTATGAG 59.252 37.037 22.98 0.00 39.21 2.90
779 800 7.094677 TGTGACTGTCAAACATGATTTATGAGG 60.095 37.037 12.81 0.00 39.21 3.86
780 801 6.375174 TGACTGTCAAACATGATTTATGAGGG 59.625 38.462 8.27 0.00 39.21 4.30
781 802 5.653769 ACTGTCAAACATGATTTATGAGGGG 59.346 40.000 0.00 0.00 39.21 4.79
782 803 4.402155 TGTCAAACATGATTTATGAGGGGC 59.598 41.667 0.00 0.00 39.21 5.80
784 805 4.646040 TCAAACATGATTTATGAGGGGCTG 59.354 41.667 0.00 0.00 39.21 4.85
785 806 3.959495 ACATGATTTATGAGGGGCTGT 57.041 42.857 0.00 0.00 39.21 4.40
786 807 4.255510 ACATGATTTATGAGGGGCTGTT 57.744 40.909 0.00 0.00 39.21 3.16
787 808 4.210331 ACATGATTTATGAGGGGCTGTTC 58.790 43.478 0.00 0.00 39.21 3.18
788 809 2.917933 TGATTTATGAGGGGCTGTTCG 58.082 47.619 0.00 0.00 0.00 3.95
791 812 1.568504 TTATGAGGGGCTGTTCGAGT 58.431 50.000 0.00 0.00 0.00 4.18
792 813 1.112113 TATGAGGGGCTGTTCGAGTC 58.888 55.000 0.00 0.00 0.00 3.36
798 819 1.733399 GGCTGTTCGAGTCCGACAC 60.733 63.158 0.40 0.00 45.50 3.67
799 820 1.007734 GCTGTTCGAGTCCGACACA 60.008 57.895 0.40 0.00 45.50 3.72
801 822 0.311165 CTGTTCGAGTCCGACACAGT 59.689 55.000 0.40 0.00 45.50 3.55
802 823 0.309922 TGTTCGAGTCCGACACAGTC 59.690 55.000 0.40 0.00 45.50 3.51
805 826 2.398252 TCGAGTCCGACACAGTCTAT 57.602 50.000 0.40 0.00 40.30 1.98
806 827 3.531934 TCGAGTCCGACACAGTCTATA 57.468 47.619 0.40 0.00 40.30 1.31
807 828 3.455327 TCGAGTCCGACACAGTCTATAG 58.545 50.000 0.40 0.00 40.30 1.31
808 829 3.131755 TCGAGTCCGACACAGTCTATAGA 59.868 47.826 0.00 0.00 40.30 1.98
809 830 3.245754 CGAGTCCGACACAGTCTATAGAC 59.754 52.174 22.97 22.97 40.78 2.59
810 831 6.059954 CGAGTCCGACACAGTCTATAGACG 62.060 54.167 23.82 20.32 43.27 4.18
822 843 5.564048 GTCTATAGACGTATAAGGGGCTG 57.436 47.826 16.87 0.00 35.12 4.85
823 844 4.398673 GTCTATAGACGTATAAGGGGCTGG 59.601 50.000 16.87 0.00 35.12 4.85
824 845 3.537795 ATAGACGTATAAGGGGCTGGA 57.462 47.619 0.00 0.00 0.00 3.86
825 846 2.400467 AGACGTATAAGGGGCTGGAT 57.600 50.000 0.00 0.00 0.00 3.41
826 847 2.690840 AGACGTATAAGGGGCTGGATT 58.309 47.619 0.00 0.00 0.00 3.01
827 848 3.046374 AGACGTATAAGGGGCTGGATTT 58.954 45.455 0.00 0.00 0.00 2.17
828 849 3.139077 GACGTATAAGGGGCTGGATTTG 58.861 50.000 0.00 0.00 0.00 2.32
829 850 2.775384 ACGTATAAGGGGCTGGATTTGA 59.225 45.455 0.00 0.00 0.00 2.69
830 851 3.139077 CGTATAAGGGGCTGGATTTGAC 58.861 50.000 0.00 0.00 0.00 3.18
831 852 2.348411 ATAAGGGGCTGGATTTGACG 57.652 50.000 0.00 0.00 0.00 4.35
832 853 0.254747 TAAGGGGCTGGATTTGACGG 59.745 55.000 0.00 0.00 0.00 4.79
833 854 1.497309 AAGGGGCTGGATTTGACGGA 61.497 55.000 0.00 0.00 0.00 4.69
834 855 1.001393 GGGGCTGGATTTGACGGAA 60.001 57.895 0.00 0.00 0.00 4.30
835 856 1.313091 GGGGCTGGATTTGACGGAAC 61.313 60.000 0.00 0.00 0.00 3.62
836 857 1.313091 GGGCTGGATTTGACGGAACC 61.313 60.000 0.00 0.00 0.00 3.62
837 858 1.644786 GGCTGGATTTGACGGAACCG 61.645 60.000 11.83 11.83 46.03 4.44
838 859 1.644786 GCTGGATTTGACGGAACCGG 61.645 60.000 17.44 0.00 44.69 5.28
845 866 3.281240 GACGGAACCGGCTGTAGA 58.719 61.111 17.44 0.00 45.30 2.59
846 867 1.814527 GACGGAACCGGCTGTAGAT 59.185 57.895 17.44 0.00 45.30 1.98
847 868 0.527817 GACGGAACCGGCTGTAGATG 60.528 60.000 17.44 0.00 45.30 2.90
848 869 1.883084 CGGAACCGGCTGTAGATGC 60.883 63.158 0.00 0.00 35.56 3.91
849 870 1.522569 GGAACCGGCTGTAGATGCT 59.477 57.895 0.00 0.00 0.00 3.79
850 871 0.530870 GGAACCGGCTGTAGATGCTC 60.531 60.000 0.00 0.00 0.00 4.26
851 872 0.461961 GAACCGGCTGTAGATGCTCT 59.538 55.000 0.00 0.00 0.00 4.09
852 873 0.176680 AACCGGCTGTAGATGCTCTG 59.823 55.000 0.00 0.00 0.00 3.35
853 874 0.684479 ACCGGCTGTAGATGCTCTGA 60.684 55.000 0.00 0.00 0.00 3.27
854 875 0.031857 CCGGCTGTAGATGCTCTGAG 59.968 60.000 0.00 0.00 0.00 3.35
855 876 1.028130 CGGCTGTAGATGCTCTGAGA 58.972 55.000 9.28 0.00 0.00 3.27
856 877 1.612950 CGGCTGTAGATGCTCTGAGAT 59.387 52.381 9.28 0.00 0.00 2.75
857 878 2.035704 CGGCTGTAGATGCTCTGAGATT 59.964 50.000 9.28 0.00 0.00 2.40
858 879 3.254411 CGGCTGTAGATGCTCTGAGATTA 59.746 47.826 9.28 0.00 0.00 1.75
859 880 4.615682 CGGCTGTAGATGCTCTGAGATTAG 60.616 50.000 9.28 0.00 0.00 1.73
860 881 4.522405 GGCTGTAGATGCTCTGAGATTAGA 59.478 45.833 9.28 0.00 0.00 2.10
861 882 5.185635 GGCTGTAGATGCTCTGAGATTAGAT 59.814 44.000 9.28 0.00 0.00 1.98
862 883 6.295236 GGCTGTAGATGCTCTGAGATTAGATT 60.295 42.308 9.28 0.00 0.00 2.40
863 884 6.587226 GCTGTAGATGCTCTGAGATTAGATTG 59.413 42.308 9.28 0.00 0.00 2.67
864 885 6.453943 TGTAGATGCTCTGAGATTAGATTGC 58.546 40.000 9.28 0.00 0.00 3.56
865 886 5.548181 AGATGCTCTGAGATTAGATTGCA 57.452 39.130 9.28 0.00 33.96 4.08
866 887 5.299148 AGATGCTCTGAGATTAGATTGCAC 58.701 41.667 9.28 0.00 32.78 4.57
867 888 4.476628 TGCTCTGAGATTAGATTGCACA 57.523 40.909 9.28 0.00 0.00 4.57
868 889 4.439968 TGCTCTGAGATTAGATTGCACAG 58.560 43.478 9.28 0.00 0.00 3.66
869 890 3.248125 GCTCTGAGATTAGATTGCACAGC 59.752 47.826 9.28 0.00 0.00 4.40
870 891 4.439968 CTCTGAGATTAGATTGCACAGCA 58.560 43.478 0.00 0.00 36.47 4.41
871 892 4.439968 TCTGAGATTAGATTGCACAGCAG 58.560 43.478 0.00 0.00 40.61 4.24
872 893 3.538591 TGAGATTAGATTGCACAGCAGG 58.461 45.455 0.00 0.00 40.61 4.85
873 894 3.054875 TGAGATTAGATTGCACAGCAGGT 60.055 43.478 0.00 0.00 40.61 4.00
882 903 3.241530 ACAGCAGGTGAAGCCCGA 61.242 61.111 6.61 0.00 38.26 5.14
886 907 0.839946 AGCAGGTGAAGCCCGATTAT 59.160 50.000 0.00 0.00 38.26 1.28
890 911 0.586802 GGTGAAGCCCGATTATTCGC 59.413 55.000 1.48 0.00 44.12 4.70
892 913 0.179234 TGAAGCCCGATTATTCGCCA 59.821 50.000 1.48 0.00 44.12 5.69
906 927 9.107367 CGATTATTCGCCAAGAAGAAATAATTC 57.893 33.333 0.00 0.00 42.47 2.17
1224 1259 3.009714 ACCCGCTCCCCCTCTTTC 61.010 66.667 0.00 0.00 0.00 2.62
1231 1266 3.721706 CCCCCTCTTTCCGCTGCT 61.722 66.667 0.00 0.00 0.00 4.24
1357 1405 1.065418 CAGATCGTAGGTTTTGGCCCT 60.065 52.381 0.00 0.00 36.04 5.19
1483 1532 8.956426 ACATTATGTGTGGACTAATCGAATTTT 58.044 29.630 0.00 0.00 40.28 1.82
1607 1679 1.179174 ACGGAAAGAAGGGCCAAAGC 61.179 55.000 6.18 0.00 38.76 3.51
1670 1744 4.467198 TTCTCGAGTGAAGGGGTTAATC 57.533 45.455 13.13 0.00 0.00 1.75
1701 1775 6.072728 TGTTATGTGAAGAACGAGGAATTTGG 60.073 38.462 0.00 0.00 0.00 3.28
1709 1783 2.306847 ACGAGGAATTTGGCAAAGTGT 58.693 42.857 18.48 6.48 0.00 3.55
1729 1803 0.110056 CACGCCTTTGTCTGACATGC 60.110 55.000 11.86 13.19 0.00 4.06
1826 1902 3.818773 CGTTAAAACACATCCCTCAAGGT 59.181 43.478 0.00 0.00 36.75 3.50
1848 1924 6.660521 AGGTAAATCATGAGAAGCACATTCAA 59.339 34.615 0.09 0.00 40.67 2.69
1854 1930 3.819368 TGAGAAGCACATTCAACTTCCA 58.181 40.909 0.00 0.00 40.54 3.53
1921 1997 0.788995 CAGCGAACTTCAGAGTGCAG 59.211 55.000 0.00 0.00 35.91 4.41
1942 2018 5.877031 CAGAAGTCTGCACCTGATTTATTG 58.123 41.667 0.00 0.00 37.15 1.90
2053 2129 2.096819 GTGAGAGACTGAGAGTAAGGCG 59.903 54.545 0.00 0.00 0.00 5.52
2055 2131 3.211045 GAGAGACTGAGAGTAAGGCGAT 58.789 50.000 0.00 0.00 0.00 4.58
2098 2176 2.419713 GCCAGTCTGATGCTCTGATTCA 60.420 50.000 0.00 0.00 0.00 2.57
2114 2192 7.572523 TCTGATTCACTAATTGCCTAATTGG 57.427 36.000 0.00 0.00 39.74 3.16
2128 2206 4.525996 CCTAATTGGACATGTCACATGGA 58.474 43.478 26.47 8.53 38.35 3.41
2141 2219 2.106338 TCACATGGAAGTGATGGTGTGT 59.894 45.455 0.00 0.00 43.18 3.72
2154 2512 4.224818 TGATGGTGTGTATCTGATGTTGGA 59.775 41.667 0.00 0.00 0.00 3.53
2157 2515 4.943093 TGGTGTGTATCTGATGTTGGAATG 59.057 41.667 0.00 0.00 0.00 2.67
2162 2527 6.372381 TGTGTATCTGATGTTGGAATGTTCAG 59.628 38.462 0.00 0.00 36.09 3.02
2171 2536 3.668141 TGGAATGTTCAGCCATACCAT 57.332 42.857 0.00 0.00 0.00 3.55
2223 2588 0.897863 TGGGTTATTGCACCTGCCAC 60.898 55.000 0.00 0.00 41.18 5.01
2276 2641 4.347453 CAGGCAGGCGGTTGTTGC 62.347 66.667 0.00 0.00 37.11 4.17
2289 2657 2.882137 GGTTGTTGCTGCCTAACACTTA 59.118 45.455 5.18 0.00 37.73 2.24
2290 2658 3.058224 GGTTGTTGCTGCCTAACACTTAG 60.058 47.826 5.18 0.00 37.73 2.18
2291 2659 3.485463 TGTTGCTGCCTAACACTTAGT 57.515 42.857 0.00 0.00 33.43 2.24
2292 2660 3.399330 TGTTGCTGCCTAACACTTAGTC 58.601 45.455 0.00 0.00 33.43 2.59
2293 2661 3.181459 TGTTGCTGCCTAACACTTAGTCA 60.181 43.478 0.00 0.00 33.43 3.41
2294 2662 3.319137 TGCTGCCTAACACTTAGTCAG 57.681 47.619 0.00 0.00 41.02 3.51
2295 2663 2.028112 TGCTGCCTAACACTTAGTCAGG 60.028 50.000 0.00 1.09 39.10 3.86
2298 2666 3.336138 GCCTAACACTTAGTCAGGCTT 57.664 47.619 17.17 0.00 46.70 4.35
2299 2667 4.467198 GCCTAACACTTAGTCAGGCTTA 57.533 45.455 17.17 0.00 46.70 3.09
2300 2668 5.024785 GCCTAACACTTAGTCAGGCTTAT 57.975 43.478 17.17 0.00 46.70 1.73
2434 2802 2.429971 TGCTGTTGCAGGTTTGAATTGA 59.570 40.909 0.00 0.00 45.31 2.57
2652 3023 5.064441 AGCTAAATACCTTTGCTTTGCTG 57.936 39.130 0.00 0.00 29.95 4.41
2654 3025 3.749665 AAATACCTTTGCTTTGCTGCA 57.250 38.095 0.00 0.00 41.65 4.41
2658 3029 2.517959 ACCTTTGCTTTGCTGCAGATA 58.482 42.857 20.43 1.74 44.27 1.98
2974 3345 6.992123 CCATGCACATATTTAGACCACTTCTA 59.008 38.462 0.00 0.00 35.55 2.10
3246 3617 4.406972 TGCACATCTTCTATCCTACAGCTT 59.593 41.667 0.00 0.00 0.00 3.74
3268 3639 7.037730 AGCTTATGAGGATGCTAATATGGAGTT 60.038 37.037 6.62 0.00 33.64 3.01
3274 3645 5.103940 AGGATGCTAATATGGAGTTGTGGTT 60.104 40.000 0.00 0.00 0.00 3.67
3375 3755 9.826574 AATTTGGTTTCCTTAGGTTTTTAACTC 57.173 29.630 0.00 0.00 0.00 3.01
3981 6271 4.084223 GCAATCACCTTTGCTTTGAACATG 60.084 41.667 2.08 0.00 46.66 3.21
4083 6373 2.770802 CCAGTGATGATGAGGAGGAAGT 59.229 50.000 0.00 0.00 0.00 3.01
4161 6455 5.657470 CACGTTCTGTGTATTGATATGGG 57.343 43.478 0.00 0.00 43.88 4.00
4240 6536 6.170506 ACAGTGATATGTTACCGTTTGTGAT 58.829 36.000 0.00 0.00 0.00 3.06
4297 6593 4.134379 AGGAGCAGTATCAGTGTCATTG 57.866 45.455 0.00 0.00 0.00 2.82
4301 6597 4.005650 AGCAGTATCAGTGTCATTGTTGG 58.994 43.478 0.00 0.00 0.00 3.77
4318 6614 7.450014 TCATTGTTGGTAAATTATCACCTGTGT 59.550 33.333 0.00 0.00 35.73 3.72
4478 6774 2.645838 AGTCAGAAAGCAAGAAGGCA 57.354 45.000 0.00 0.00 35.83 4.75
4506 6802 1.433534 GACCAAGAAGTTCGGAGCAG 58.566 55.000 4.03 0.00 0.00 4.24
4537 6833 1.528129 GAGGTGCTGTTCAGAAAGGG 58.472 55.000 3.84 0.00 0.00 3.95
4549 6845 5.163519 TGTTCAGAAAGGGAAAAAGCAGAAG 60.164 40.000 0.00 0.00 0.00 2.85
4609 6905 7.044181 TGAGTATAGATTCTGCTGAAGGTTTG 58.956 38.462 11.86 0.00 35.44 2.93
4624 6920 5.306937 TGAAGGTTTGAGAGATAAGACACCA 59.693 40.000 0.00 0.00 0.00 4.17
4638 6934 1.678101 GACACCAAAGCAAGCTTCTGT 59.322 47.619 7.88 9.58 34.84 3.41
4817 7119 0.252479 AGCTGAAGCAGGAGACATGG 59.748 55.000 4.90 0.00 45.16 3.66
5026 7346 0.894141 CTGAGACAGAGGGTGGACTG 59.106 60.000 0.00 0.00 39.65 3.51
5105 7425 2.604118 CCTAGAAAGGGGAAGGCGA 58.396 57.895 0.00 0.00 39.48 5.54
5147 7467 3.833070 TCCCAACTCTTCTCCTGTAAGTC 59.167 47.826 0.00 0.00 0.00 3.01
5727 8175 3.007290 CAGTGGAAGTTCTCTCCATGTCA 59.993 47.826 2.25 0.00 35.82 3.58
5784 8232 7.104290 GCTATTTTTACACAAGTACTCCCTCT 58.896 38.462 0.00 0.00 0.00 3.69
5802 8250 6.889198 TCCCTCTGTATCAAAATACAAGAGG 58.111 40.000 21.74 21.74 46.92 3.69
5851 8300 6.509523 AAAGGTCCGATATTTTGATAGGGA 57.490 37.500 0.00 0.00 0.00 4.20
5852 8301 5.746990 AGGTCCGATATTTTGATAGGGAG 57.253 43.478 0.00 0.00 0.00 4.30
5853 8302 4.020128 AGGTCCGATATTTTGATAGGGAGC 60.020 45.833 0.00 0.00 40.03 4.70
5854 8303 3.927142 GTCCGATATTTTGATAGGGAGCG 59.073 47.826 0.00 0.00 0.00 5.03
5855 8304 3.830178 TCCGATATTTTGATAGGGAGCGA 59.170 43.478 0.00 0.00 0.00 4.93
5856 8305 4.082190 TCCGATATTTTGATAGGGAGCGAG 60.082 45.833 0.00 0.00 0.00 5.03
5857 8306 4.322049 CCGATATTTTGATAGGGAGCGAGT 60.322 45.833 0.00 0.00 0.00 4.18
5858 8307 5.105877 CCGATATTTTGATAGGGAGCGAGTA 60.106 44.000 0.00 0.00 0.00 2.59
5859 8308 6.030849 CGATATTTTGATAGGGAGCGAGTAG 58.969 44.000 0.00 0.00 0.00 2.57
5860 8309 6.349445 CGATATTTTGATAGGGAGCGAGTAGT 60.349 42.308 0.00 0.00 0.00 2.73
5861 8310 7.148289 CGATATTTTGATAGGGAGCGAGTAGTA 60.148 40.741 0.00 0.00 0.00 1.82
5862 8311 6.726490 ATTTTGATAGGGAGCGAGTAGTAA 57.274 37.500 0.00 0.00 0.00 2.24
5863 8312 6.534475 TTTTGATAGGGAGCGAGTAGTAAA 57.466 37.500 0.00 0.00 0.00 2.01
5864 8313 5.511234 TTGATAGGGAGCGAGTAGTAAAC 57.489 43.478 0.00 0.00 0.00 2.01
5865 8314 4.529897 TGATAGGGAGCGAGTAGTAAACA 58.470 43.478 0.00 0.00 0.00 2.83
5866 8315 5.138276 TGATAGGGAGCGAGTAGTAAACAT 58.862 41.667 0.00 0.00 0.00 2.71
5867 8316 3.802948 AGGGAGCGAGTAGTAAACATG 57.197 47.619 0.00 0.00 0.00 3.21
5868 8317 3.362706 AGGGAGCGAGTAGTAAACATGA 58.637 45.455 0.00 0.00 0.00 3.07
5869 8318 3.767673 AGGGAGCGAGTAGTAAACATGAA 59.232 43.478 0.00 0.00 0.00 2.57
5870 8319 3.864003 GGGAGCGAGTAGTAAACATGAAC 59.136 47.826 0.00 0.00 0.00 3.18
5871 8320 4.381718 GGGAGCGAGTAGTAAACATGAACT 60.382 45.833 0.00 2.46 0.00 3.01
5873 8322 5.288952 GGAGCGAGTAGTAAACATGAACTTC 59.711 44.000 0.00 0.00 0.00 3.01
5878 8327 8.706035 GCGAGTAGTAAACATGAACTTCTTTTA 58.294 33.333 0.00 0.00 0.00 1.52
5977 8448 0.107897 ACGATTTGGGCAGCGTATGA 60.108 50.000 0.00 0.00 34.93 2.15
6000 8472 0.605589 AACCTGGTCGCCTGTTTAGC 60.606 55.000 0.00 0.00 0.00 3.09
6004 8476 2.388232 GGTCGCCTGTTTAGCCGTG 61.388 63.158 0.00 0.00 0.00 4.94
6034 8517 7.716998 TGCTTTATCTGAACCAAGATAGAATCC 59.283 37.037 0.00 0.00 39.66 3.01
6046 8531 5.041191 AGATAGAATCCGATGTTTGGCTT 57.959 39.130 0.00 0.00 0.00 4.35
6049 8534 6.876257 AGATAGAATCCGATGTTTGGCTTATC 59.124 38.462 0.00 0.00 0.00 1.75
6103 8590 2.095161 GCGCGTAGGTCTCATAGCTAAT 60.095 50.000 8.43 0.00 39.81 1.73
6165 8652 2.225267 ACCCCACCTAAAAATGGACCTG 60.225 50.000 0.00 0.00 38.34 4.00
6194 8682 3.006940 TGAAACGCTCTGTGACAACTTT 58.993 40.909 0.00 0.00 0.00 2.66
6197 8685 0.588252 CGCTCTGTGACAACTTTGGG 59.412 55.000 0.00 0.00 0.00 4.12
6198 8686 1.680338 GCTCTGTGACAACTTTGGGT 58.320 50.000 0.00 0.00 0.00 4.51
6199 8687 1.604278 GCTCTGTGACAACTTTGGGTC 59.396 52.381 0.00 0.00 34.63 4.46
6200 8688 1.867233 CTCTGTGACAACTTTGGGTCG 59.133 52.381 0.00 0.00 36.83 4.79
6201 8689 1.208535 TCTGTGACAACTTTGGGTCGT 59.791 47.619 0.00 0.00 36.83 4.34
6206 8695 2.011222 GACAACTTTGGGTCGTCACAA 58.989 47.619 0.00 0.00 34.92 3.33
6257 9551 3.055819 GCAACTCTGAACCTGGTCATCTA 60.056 47.826 0.00 0.00 0.00 1.98
6292 10309 6.989169 GCTGGTTCTCACATATCTCAAACTAT 59.011 38.462 0.00 0.00 0.00 2.12
6294 10311 8.078060 TGGTTCTCACATATCTCAAACTATCA 57.922 34.615 0.00 0.00 0.00 2.15
6296 10313 8.200792 GGTTCTCACATATCTCAAACTATCACT 58.799 37.037 0.00 0.00 0.00 3.41
6383 10417 6.016276 AGTGACAACCAACCAAATTCTCATAC 60.016 38.462 0.00 0.00 0.00 2.39
6384 10418 5.049060 TGACAACCAACCAAATTCTCATACG 60.049 40.000 0.00 0.00 0.00 3.06
6385 10419 4.825085 ACAACCAACCAAATTCTCATACGT 59.175 37.500 0.00 0.00 0.00 3.57
6386 10420 5.998981 ACAACCAACCAAATTCTCATACGTA 59.001 36.000 0.00 0.00 0.00 3.57
6470 10789 4.074259 TCCACCACAAAAGACATCATCAG 58.926 43.478 0.00 0.00 0.00 2.90
6476 10795 3.256631 ACAAAAGACATCATCAGCAACCC 59.743 43.478 0.00 0.00 0.00 4.11
6477 10796 2.134789 AAGACATCATCAGCAACCCC 57.865 50.000 0.00 0.00 0.00 4.95
6478 10797 0.994247 AGACATCATCAGCAACCCCA 59.006 50.000 0.00 0.00 0.00 4.96
6479 10798 1.355381 AGACATCATCAGCAACCCCAA 59.645 47.619 0.00 0.00 0.00 4.12
6480 10799 2.170166 GACATCATCAGCAACCCCAAA 58.830 47.619 0.00 0.00 0.00 3.28
6481 10800 2.165030 GACATCATCAGCAACCCCAAAG 59.835 50.000 0.00 0.00 0.00 2.77
6482 10801 1.479323 CATCATCAGCAACCCCAAAGG 59.521 52.381 0.00 0.00 43.78 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 115 0.461548 TAGGCATGTGCTCTTCCTCG 59.538 55.000 4.84 0.00 41.70 4.63
126 135 0.586802 GCAAACTTGACCGTGGTCTC 59.413 55.000 19.17 0.00 44.80 3.36
150 159 1.732917 CAAACACATGCACCACGGT 59.267 52.632 0.00 0.00 0.00 4.83
185 194 1.063469 GTATCCGGCACATTTGGTTCG 59.937 52.381 0.00 0.00 0.00 3.95
225 234 0.674895 CCTGGAAACCTTGCCTCTCG 60.675 60.000 0.00 0.00 0.00 4.04
341 357 5.711506 AGTCATGTGATGTTATTGCTTCCAA 59.288 36.000 0.00 0.00 35.01 3.53
399 415 5.412594 AGCACATTAATGTCGTTGTGAGAAT 59.587 36.000 18.25 0.00 41.50 2.40
434 450 5.459762 CGTTACAAAGTCTCCTAAACACGAA 59.540 40.000 0.00 0.00 0.00 3.85
461 477 2.049248 GTTGCATGGCGGTGGTTG 60.049 61.111 0.00 0.00 0.00 3.77
527 544 3.128764 CGCCGCTCAGTGAGGATATATAA 59.871 47.826 21.54 0.00 37.90 0.98
552 572 3.049108 TGGGGTTCGGATATGGTCTTA 57.951 47.619 0.00 0.00 0.00 2.10
657 678 3.003068 CAGCTCCACAAACAGTTCTTCAG 59.997 47.826 0.00 0.00 0.00 3.02
660 681 1.678101 GCAGCTCCACAAACAGTTCTT 59.322 47.619 0.00 0.00 0.00 2.52
665 686 1.336517 CCATTGCAGCTCCACAAACAG 60.337 52.381 0.00 0.00 0.00 3.16
691 712 5.007528 TGCATGTCCATTATACACGTGAATG 59.992 40.000 25.01 20.22 0.00 2.67
692 713 5.122519 TGCATGTCCATTATACACGTGAAT 58.877 37.500 25.01 8.96 0.00 2.57
693 714 4.508662 TGCATGTCCATTATACACGTGAA 58.491 39.130 25.01 6.59 0.00 3.18
695 716 5.120674 CCTATGCATGTCCATTATACACGTG 59.879 44.000 15.48 15.48 0.00 4.49
696 717 5.221641 ACCTATGCATGTCCATTATACACGT 60.222 40.000 10.16 0.00 0.00 4.49
697 718 5.237815 ACCTATGCATGTCCATTATACACG 58.762 41.667 10.16 0.00 0.00 4.49
699 720 6.016360 GCAAACCTATGCATGTCCATTATACA 60.016 38.462 10.16 0.00 45.70 2.29
701 722 6.573664 GCAAACCTATGCATGTCCATTATA 57.426 37.500 10.16 0.00 45.70 0.98
703 724 4.916983 GCAAACCTATGCATGTCCATTA 57.083 40.909 10.16 0.00 45.70 1.90
704 725 3.806625 GCAAACCTATGCATGTCCATT 57.193 42.857 10.16 0.00 45.70 3.16
713 734 5.653507 TCTCAAATTCATGCAAACCTATGC 58.346 37.500 0.00 0.00 46.58 3.14
714 735 6.860080 ACTCTCAAATTCATGCAAACCTATG 58.140 36.000 0.00 0.00 0.00 2.23
715 736 7.472334 AACTCTCAAATTCATGCAAACCTAT 57.528 32.000 0.00 0.00 0.00 2.57
717 738 5.796424 AACTCTCAAATTCATGCAAACCT 57.204 34.783 0.00 0.00 0.00 3.50
719 740 5.984926 TCCAAACTCTCAAATTCATGCAAAC 59.015 36.000 0.00 0.00 0.00 2.93
721 742 5.787953 TCCAAACTCTCAAATTCATGCAA 57.212 34.783 0.00 0.00 0.00 4.08
725 746 8.413309 TCTCAAATCCAAACTCTCAAATTCAT 57.587 30.769 0.00 0.00 0.00 2.57
726 747 7.822161 TCTCAAATCCAAACTCTCAAATTCA 57.178 32.000 0.00 0.00 0.00 2.57
727 748 8.302438 ACATCTCAAATCCAAACTCTCAAATTC 58.698 33.333 0.00 0.00 0.00 2.17
729 750 7.232127 ACACATCTCAAATCCAAACTCTCAAAT 59.768 33.333 0.00 0.00 0.00 2.32
730 751 6.547141 ACACATCTCAAATCCAAACTCTCAAA 59.453 34.615 0.00 0.00 0.00 2.69
731 752 6.016860 CACACATCTCAAATCCAAACTCTCAA 60.017 38.462 0.00 0.00 0.00 3.02
732 753 5.471116 CACACATCTCAAATCCAAACTCTCA 59.529 40.000 0.00 0.00 0.00 3.27
733 754 5.702670 TCACACATCTCAAATCCAAACTCTC 59.297 40.000 0.00 0.00 0.00 3.20
734 755 5.471456 GTCACACATCTCAAATCCAAACTCT 59.529 40.000 0.00 0.00 0.00 3.24
736 757 5.240183 CAGTCACACATCTCAAATCCAAACT 59.760 40.000 0.00 0.00 0.00 2.66
737 758 5.009010 ACAGTCACACATCTCAAATCCAAAC 59.991 40.000 0.00 0.00 0.00 2.93
738 759 5.132502 ACAGTCACACATCTCAAATCCAAA 58.867 37.500 0.00 0.00 0.00 3.28
739 760 4.717877 ACAGTCACACATCTCAAATCCAA 58.282 39.130 0.00 0.00 0.00 3.53
742 763 5.929697 TTGACAGTCACACATCTCAAATC 57.070 39.130 1.52 0.00 0.00 2.17
743 764 5.589855 TGTTTGACAGTCACACATCTCAAAT 59.410 36.000 17.02 0.00 32.72 2.32
745 766 4.512484 TGTTTGACAGTCACACATCTCAA 58.488 39.130 17.02 0.00 32.72 3.02
746 767 4.135747 TGTTTGACAGTCACACATCTCA 57.864 40.909 17.02 0.00 32.72 3.27
747 768 4.751600 TCATGTTTGACAGTCACACATCTC 59.248 41.667 26.04 0.67 42.23 2.75
748 769 4.707105 TCATGTTTGACAGTCACACATCT 58.293 39.130 26.04 10.42 42.23 2.90
749 770 5.618056 ATCATGTTTGACAGTCACACATC 57.382 39.130 26.04 4.09 42.23 3.06
750 771 6.395426 AAATCATGTTTGACAGTCACACAT 57.605 33.333 24.03 24.03 45.52 3.21
751 772 5.833406 AAATCATGTTTGACAGTCACACA 57.167 34.783 21.93 21.93 40.76 3.72
752 773 7.584108 TCATAAATCATGTTTGACAGTCACAC 58.416 34.615 12.26 12.26 35.96 3.82
754 775 7.246311 CCTCATAAATCATGTTTGACAGTCAC 58.754 38.462 1.52 0.00 35.96 3.67
755 776 6.375174 CCCTCATAAATCATGTTTGACAGTCA 59.625 38.462 0.00 0.00 35.96 3.41
757 778 5.653769 CCCCTCATAAATCATGTTTGACAGT 59.346 40.000 0.00 0.00 35.96 3.55
758 779 5.450965 GCCCCTCATAAATCATGTTTGACAG 60.451 44.000 0.00 0.00 35.96 3.51
759 780 4.402155 GCCCCTCATAAATCATGTTTGACA 59.598 41.667 0.00 0.00 35.96 3.58
761 782 4.646040 CAGCCCCTCATAAATCATGTTTGA 59.354 41.667 0.00 0.00 35.96 2.69
762 783 4.403432 ACAGCCCCTCATAAATCATGTTTG 59.597 41.667 0.00 0.00 35.96 2.93
764 785 4.255510 ACAGCCCCTCATAAATCATGTT 57.744 40.909 0.00 0.00 35.96 2.71
765 786 3.959495 ACAGCCCCTCATAAATCATGT 57.041 42.857 0.00 0.00 35.96 3.21
766 787 3.251729 CGAACAGCCCCTCATAAATCATG 59.748 47.826 0.00 0.00 35.81 3.07
767 788 3.136443 TCGAACAGCCCCTCATAAATCAT 59.864 43.478 0.00 0.00 0.00 2.45
768 789 2.503765 TCGAACAGCCCCTCATAAATCA 59.496 45.455 0.00 0.00 0.00 2.57
770 791 2.505819 ACTCGAACAGCCCCTCATAAAT 59.494 45.455 0.00 0.00 0.00 1.40
771 792 1.906574 ACTCGAACAGCCCCTCATAAA 59.093 47.619 0.00 0.00 0.00 1.40
773 794 1.112113 GACTCGAACAGCCCCTCATA 58.888 55.000 0.00 0.00 0.00 2.15
774 795 1.617947 GGACTCGAACAGCCCCTCAT 61.618 60.000 0.00 0.00 0.00 2.90
776 797 2.579738 GGACTCGAACAGCCCCTC 59.420 66.667 0.00 0.00 0.00 4.30
777 798 3.382832 CGGACTCGAACAGCCCCT 61.383 66.667 0.00 0.00 39.00 4.79
778 799 3.379445 TCGGACTCGAACAGCCCC 61.379 66.667 0.00 0.00 43.03 5.80
784 805 8.351734 GTCTATAGACTGTGTCGGACTCGAAC 62.352 50.000 23.12 0.00 43.17 3.95
785 806 6.417492 GTCTATAGACTGTGTCGGACTCGAA 61.417 48.000 23.12 0.00 43.17 3.71
786 807 2.398252 ATAGACTGTGTCGGACTCGA 57.602 50.000 9.88 0.00 43.86 4.04
787 808 3.245754 GTCTATAGACTGTGTCGGACTCG 59.754 52.174 23.12 5.32 41.65 4.18
788 809 3.245754 CGTCTATAGACTGTGTCGGACTC 59.754 52.174 26.32 6.47 42.66 3.36
791 812 3.257469 ACGTCTATAGACTGTGTCGGA 57.743 47.619 26.32 0.00 42.66 4.55
792 813 6.128607 CCTTATACGTCTATAGACTGTGTCGG 60.129 46.154 26.32 20.60 42.66 4.79
794 815 6.149142 CCCCTTATACGTCTATAGACTGTGTC 59.851 46.154 26.32 3.83 42.66 3.67
795 816 6.002704 CCCCTTATACGTCTATAGACTGTGT 58.997 44.000 26.32 23.31 42.66 3.72
798 819 5.124138 CAGCCCCTTATACGTCTATAGACTG 59.876 48.000 26.32 21.52 42.66 3.51
799 820 5.254901 CAGCCCCTTATACGTCTATAGACT 58.745 45.833 26.32 17.11 42.66 3.24
801 822 4.290459 TCCAGCCCCTTATACGTCTATAGA 59.710 45.833 0.00 0.00 0.00 1.98
802 823 4.597004 TCCAGCCCCTTATACGTCTATAG 58.403 47.826 0.00 0.00 0.00 1.31
805 826 3.537795 ATCCAGCCCCTTATACGTCTA 57.462 47.619 0.00 0.00 0.00 2.59
806 827 2.400467 ATCCAGCCCCTTATACGTCT 57.600 50.000 0.00 0.00 0.00 4.18
807 828 3.139077 CAAATCCAGCCCCTTATACGTC 58.861 50.000 0.00 0.00 0.00 4.34
808 829 2.775384 TCAAATCCAGCCCCTTATACGT 59.225 45.455 0.00 0.00 0.00 3.57
809 830 3.139077 GTCAAATCCAGCCCCTTATACG 58.861 50.000 0.00 0.00 0.00 3.06
810 831 3.139077 CGTCAAATCCAGCCCCTTATAC 58.861 50.000 0.00 0.00 0.00 1.47
811 832 2.105821 CCGTCAAATCCAGCCCCTTATA 59.894 50.000 0.00 0.00 0.00 0.98
812 833 1.133792 CCGTCAAATCCAGCCCCTTAT 60.134 52.381 0.00 0.00 0.00 1.73
813 834 0.254747 CCGTCAAATCCAGCCCCTTA 59.745 55.000 0.00 0.00 0.00 2.69
814 835 1.000896 CCGTCAAATCCAGCCCCTT 60.001 57.895 0.00 0.00 0.00 3.95
815 836 1.497309 TTCCGTCAAATCCAGCCCCT 61.497 55.000 0.00 0.00 0.00 4.79
816 837 1.001393 TTCCGTCAAATCCAGCCCC 60.001 57.895 0.00 0.00 0.00 5.80
817 838 1.313091 GGTTCCGTCAAATCCAGCCC 61.313 60.000 0.00 0.00 0.00 5.19
818 839 1.644786 CGGTTCCGTCAAATCCAGCC 61.645 60.000 2.82 0.00 0.00 4.85
819 840 1.644786 CCGGTTCCGTCAAATCCAGC 61.645 60.000 10.36 0.00 0.00 4.85
820 841 1.644786 GCCGGTTCCGTCAAATCCAG 61.645 60.000 1.90 0.00 0.00 3.86
821 842 1.673009 GCCGGTTCCGTCAAATCCA 60.673 57.895 1.90 0.00 0.00 3.41
822 843 1.376812 AGCCGGTTCCGTCAAATCC 60.377 57.895 1.90 0.00 0.00 3.01
823 844 0.953960 ACAGCCGGTTCCGTCAAATC 60.954 55.000 1.90 0.00 0.00 2.17
824 845 0.322322 TACAGCCGGTTCCGTCAAAT 59.678 50.000 1.90 0.00 0.00 2.32
825 846 0.320073 CTACAGCCGGTTCCGTCAAA 60.320 55.000 1.90 0.00 0.00 2.69
826 847 1.180456 TCTACAGCCGGTTCCGTCAA 61.180 55.000 1.90 0.00 0.00 3.18
827 848 0.968901 ATCTACAGCCGGTTCCGTCA 60.969 55.000 1.90 0.00 0.00 4.35
828 849 0.527817 CATCTACAGCCGGTTCCGTC 60.528 60.000 1.90 0.00 0.00 4.79
829 850 1.515954 CATCTACAGCCGGTTCCGT 59.484 57.895 1.90 0.00 0.00 4.69
830 851 1.883084 GCATCTACAGCCGGTTCCG 60.883 63.158 1.90 4.08 0.00 4.30
831 852 0.530870 GAGCATCTACAGCCGGTTCC 60.531 60.000 1.90 0.00 0.00 3.62
832 853 2.979130 GAGCATCTACAGCCGGTTC 58.021 57.895 1.90 0.00 0.00 3.62
844 865 5.055144 TGTGCAATCTAATCTCAGAGCATC 58.945 41.667 0.00 0.00 31.02 3.91
845 866 5.032327 TGTGCAATCTAATCTCAGAGCAT 57.968 39.130 0.00 0.00 31.02 3.79
846 867 4.439968 CTGTGCAATCTAATCTCAGAGCA 58.560 43.478 0.00 0.00 0.00 4.26
847 868 3.248125 GCTGTGCAATCTAATCTCAGAGC 59.752 47.826 0.00 0.00 37.00 4.09
848 869 4.439968 TGCTGTGCAATCTAATCTCAGAG 58.560 43.478 0.00 0.00 34.76 3.35
849 870 4.439968 CTGCTGTGCAATCTAATCTCAGA 58.560 43.478 0.00 0.00 38.41 3.27
850 871 3.560481 CCTGCTGTGCAATCTAATCTCAG 59.440 47.826 0.00 0.00 38.41 3.35
851 872 3.054875 ACCTGCTGTGCAATCTAATCTCA 60.055 43.478 0.00 0.00 38.41 3.27
852 873 3.311871 CACCTGCTGTGCAATCTAATCTC 59.688 47.826 0.00 0.00 38.41 2.75
853 874 3.054875 TCACCTGCTGTGCAATCTAATCT 60.055 43.478 0.00 0.00 45.03 2.40
854 875 3.273434 TCACCTGCTGTGCAATCTAATC 58.727 45.455 0.00 0.00 45.03 1.75
855 876 3.354948 TCACCTGCTGTGCAATCTAAT 57.645 42.857 0.00 0.00 45.03 1.73
856 877 2.857186 TCACCTGCTGTGCAATCTAA 57.143 45.000 0.00 0.00 45.03 2.10
857 878 2.703416 CTTCACCTGCTGTGCAATCTA 58.297 47.619 0.00 0.00 45.03 1.98
858 879 1.531423 CTTCACCTGCTGTGCAATCT 58.469 50.000 0.00 0.00 45.03 2.40
859 880 0.109412 GCTTCACCTGCTGTGCAATC 60.109 55.000 0.00 0.00 45.03 2.67
860 881 1.530013 GGCTTCACCTGCTGTGCAAT 61.530 55.000 0.00 0.00 45.03 3.56
861 882 2.195567 GGCTTCACCTGCTGTGCAA 61.196 57.895 0.00 0.00 45.03 4.08
862 883 2.595463 GGCTTCACCTGCTGTGCA 60.595 61.111 2.50 0.00 45.03 4.57
863 884 3.368571 GGGCTTCACCTGCTGTGC 61.369 66.667 2.50 0.00 45.03 4.57
864 885 2.809861 ATCGGGCTTCACCTGCTGTG 62.810 60.000 1.06 1.06 45.54 3.66
865 886 2.129555 AATCGGGCTTCACCTGCTGT 62.130 55.000 0.00 0.00 45.54 4.40
866 887 0.107703 TAATCGGGCTTCACCTGCTG 60.108 55.000 0.00 0.00 45.54 4.41
867 888 0.839946 ATAATCGGGCTTCACCTGCT 59.160 50.000 0.00 0.00 45.54 4.24
868 889 1.604278 GAATAATCGGGCTTCACCTGC 59.396 52.381 0.00 0.00 45.54 4.85
870 891 2.240493 CGAATAATCGGGCTTCACCT 57.760 50.000 0.00 0.00 45.32 4.00
881 902 9.950680 TGAATTATTTCTTCTTGGCGAATAATC 57.049 29.630 0.00 0.00 32.78 1.75
882 903 9.956720 CTGAATTATTTCTTCTTGGCGAATAAT 57.043 29.630 0.00 0.00 32.78 1.28
886 907 5.415701 AGCTGAATTATTTCTTCTTGGCGAA 59.584 36.000 0.00 0.00 32.78 4.70
890 911 7.256286 CAAGGAGCTGAATTATTTCTTCTTGG 58.744 38.462 0.00 1.22 32.78 3.61
892 913 6.127507 GGCAAGGAGCTGAATTATTTCTTCTT 60.128 38.462 0.00 0.00 44.79 2.52
906 927 2.361992 TGGCATGGCAAGGAGCTG 60.362 61.111 21.13 0.00 44.79 4.24
940 962 2.413453 GGTTTCATTCACACTCTCGAGC 59.587 50.000 7.81 0.00 0.00 5.03
1138 1173 2.436824 GAAGGGAAGCACCTCGCC 60.437 66.667 0.00 0.00 44.04 5.54
1166 1201 0.674895 AGCGGGAGAAGAATGCACAC 60.675 55.000 0.00 0.00 0.00 3.82
1168 1203 1.092345 GGAGCGGGAGAAGAATGCAC 61.092 60.000 0.00 0.00 0.00 4.57
1357 1405 1.383080 GTTCGTACGACGCAAAATCGA 59.617 47.619 19.36 0.00 42.21 3.59
1409 1457 4.033776 CCCCCTCGAAAGCAGCCA 62.034 66.667 0.00 0.00 0.00 4.75
1429 1478 2.592308 GCCTCTCCCCTCGCAAAT 59.408 61.111 0.00 0.00 0.00 2.32
1479 1528 1.255882 TGACCGATGCCAGCAAAAAT 58.744 45.000 0.00 0.00 0.00 1.82
1483 1532 2.334946 GCTTGACCGATGCCAGCAA 61.335 57.895 0.00 0.00 0.00 3.91
1651 1724 2.426024 TCGATTAACCCCTTCACTCGAG 59.574 50.000 11.84 11.84 0.00 4.04
1653 1726 2.953466 TCGATTAACCCCTTCACTCG 57.047 50.000 0.00 0.00 0.00 4.18
1670 1744 6.015504 CCTCGTTCTTCACATAACAAAATCG 58.984 40.000 0.00 0.00 0.00 3.34
1701 1775 2.872028 CAAAGGCGTGACACTTTGC 58.128 52.632 14.10 0.00 44.62 3.68
1709 1783 1.511850 CATGTCAGACAAAGGCGTGA 58.488 50.000 7.50 0.00 0.00 4.35
1826 1902 7.692460 AGTTGAATGTGCTTCTCATGATTTA 57.308 32.000 0.00 0.00 34.75 1.40
1848 1924 7.395489 AGTCTCTTGATAAAATGCATTGGAAGT 59.605 33.333 13.82 0.00 0.00 3.01
1854 1930 6.405508 CCAGCAGTCTCTTGATAAAATGCATT 60.406 38.462 5.99 5.99 34.93 3.56
1921 1997 4.943705 TCCAATAAATCAGGTGCAGACTTC 59.056 41.667 0.00 0.00 0.00 3.01
1942 2018 1.002792 GTGCAGGAACAAAACTCGTCC 60.003 52.381 0.00 0.00 0.00 4.79
1968 2044 3.492313 GCACTTGCTCGGTGAATTAAAG 58.508 45.455 8.09 0.00 36.89 1.85
2053 2129 6.617782 TCTGGAGATCTCAAATGGGATATC 57.382 41.667 23.85 8.99 31.70 1.63
2055 2131 4.285517 GCTCTGGAGATCTCAAATGGGATA 59.714 45.833 23.85 0.00 0.00 2.59
2098 2176 6.095440 GTGACATGTCCAATTAGGCAATTAGT 59.905 38.462 22.85 0.00 37.29 2.24
2128 2206 5.426689 ACATCAGATACACACCATCACTT 57.573 39.130 0.00 0.00 0.00 3.16
2141 2219 4.883585 GGCTGAACATTCCAACATCAGATA 59.116 41.667 5.34 0.00 39.85 1.98
2171 2536 1.630369 ACAAGGCTACAGCTCATTCCA 59.370 47.619 0.54 0.00 41.70 3.53
2223 2588 5.181009 TGAAATCATCTGCAAGGAGTAGTG 58.819 41.667 0.00 0.00 0.00 2.74
2289 2657 1.905215 AGCAGTCACATAAGCCTGACT 59.095 47.619 0.00 0.00 46.57 3.41
2290 2658 2.393271 AGCAGTCACATAAGCCTGAC 57.607 50.000 0.00 0.00 37.63 3.51
2291 2659 3.423539 AAAGCAGTCACATAAGCCTGA 57.576 42.857 0.00 0.00 0.00 3.86
2292 2660 4.510038 AAAAAGCAGTCACATAAGCCTG 57.490 40.909 0.00 0.00 0.00 4.85
2293 2661 7.393234 TGTTATAAAAAGCAGTCACATAAGCCT 59.607 33.333 0.00 0.00 0.00 4.58
2294 2662 7.535139 TGTTATAAAAAGCAGTCACATAAGCC 58.465 34.615 0.00 0.00 0.00 4.35
2295 2663 8.237267 ACTGTTATAAAAAGCAGTCACATAAGC 58.763 33.333 1.63 0.00 37.62 3.09
2297 2665 9.278978 TCACTGTTATAAAAAGCAGTCACATAA 57.721 29.630 4.03 0.00 39.82 1.90
2298 2666 8.840833 TCACTGTTATAAAAAGCAGTCACATA 57.159 30.769 4.03 0.00 39.82 2.29
2299 2667 7.744087 TCACTGTTATAAAAAGCAGTCACAT 57.256 32.000 4.03 0.00 39.82 3.21
2300 2668 7.561021 TTCACTGTTATAAAAAGCAGTCACA 57.439 32.000 4.03 0.00 39.82 3.58
2426 2794 9.465199 TTCTCTTCACCATAATGATCAATTCAA 57.535 29.630 0.00 0.00 38.03 2.69
2434 2802 5.748402 TGCACTTCTCTTCACCATAATGAT 58.252 37.500 0.00 0.00 0.00 2.45
2652 3023 6.490040 TGGGGTAATCTAAATTGCTTATCTGC 59.510 38.462 0.00 0.00 0.00 4.26
2654 3025 8.058847 TGTTGGGGTAATCTAAATTGCTTATCT 58.941 33.333 0.00 0.00 0.00 1.98
2658 3029 6.440328 ACATGTTGGGGTAATCTAAATTGCTT 59.560 34.615 0.00 0.00 0.00 3.91
2845 3216 1.230324 GGCACTTGAGACTTGACCAC 58.770 55.000 0.00 0.00 0.00 4.16
2974 3345 8.357290 TCATCAATGACCTTGAATTCAGAAAT 57.643 30.769 8.41 0.00 46.62 2.17
3246 3617 7.389232 CACAACTCCATATTAGCATCCTCATA 58.611 38.462 0.00 0.00 0.00 2.15
3268 3639 5.801531 ATACAGTTCAGTCAGTAACCACA 57.198 39.130 0.00 0.00 0.00 4.17
3274 3645 8.585881 AGCTTCTTTAATACAGTTCAGTCAGTA 58.414 33.333 0.00 0.00 0.00 2.74
3375 3755 6.405842 GCCTTTTGGTTATATCAGTTTCCTGG 60.406 42.308 0.00 0.00 42.99 4.45
3805 6092 6.480285 TGCGTTAGAAGACAAAACAACTAAC 58.520 36.000 0.00 0.00 37.43 2.34
3824 6112 3.569701 GGGTTGGATATCATTCATGCGTT 59.430 43.478 4.83 0.00 0.00 4.84
3875 6163 6.482641 AGAAACTGCATACAATGAGCTCATAG 59.517 38.462 28.92 21.38 35.10 2.23
3981 6271 6.879458 ACCTCTACCAAACTGTGATTCATAAC 59.121 38.462 0.00 0.00 0.00 1.89
4083 6373 5.872070 GGAAATTCACCTTTTGTGTTGACAA 59.128 36.000 0.00 0.00 45.61 3.18
4161 6455 2.286365 TGATCAAACCACAAGGACCC 57.714 50.000 0.00 0.00 38.69 4.46
4318 6614 8.729805 AAAACTTGATCAGCAAAATAAAACCA 57.270 26.923 0.00 0.00 35.74 3.67
4329 6625 4.458989 AGGCGATTTAAAACTTGATCAGCA 59.541 37.500 0.00 0.00 0.00 4.41
4330 6626 4.986622 AGGCGATTTAAAACTTGATCAGC 58.013 39.130 0.00 0.00 0.00 4.26
4478 6774 3.118956 CGAACTTCTTGGTCCTGCTCTAT 60.119 47.826 0.00 0.00 0.00 1.98
4506 6802 1.109323 AGCACCTCCACCTTTTGCAC 61.109 55.000 0.00 0.00 35.57 4.57
4537 6833 2.294512 CCTCACACCCTTCTGCTTTTTC 59.705 50.000 0.00 0.00 0.00 2.29
4549 6845 1.529244 ACTTGCTTGCCTCACACCC 60.529 57.895 0.00 0.00 0.00 4.61
4573 6869 7.616673 CAGAATCTATACTCAAAGCTTTGTCG 58.383 38.462 32.46 26.28 39.18 4.35
4609 6905 4.094146 GCTTGCTTTGGTGTCTTATCTCTC 59.906 45.833 0.00 0.00 0.00 3.20
4624 6920 1.534595 CGCACAACAGAAGCTTGCTTT 60.535 47.619 2.10 0.00 0.00 3.51
4638 6934 4.385825 ACCACTCTTTTTATCTCGCACAA 58.614 39.130 0.00 0.00 0.00 3.33
4817 7119 1.329906 CTGGCTTCGATTCACTGATGC 59.670 52.381 0.00 0.00 35.28 3.91
5105 7425 1.073199 CCTTGGTCTCGGGCTTTGT 59.927 57.895 0.00 0.00 0.00 2.83
5113 7433 0.905357 AGTTGGGATCCTTGGTCTCG 59.095 55.000 12.58 0.00 0.00 4.04
5147 7467 4.500837 CGTATTCAGAAGAATGGAGTGTCG 59.499 45.833 1.21 0.00 44.03 4.35
5344 7683 8.181573 GGTGTGATTACAAAATATCATCAACGT 58.818 33.333 0.00 0.00 38.82 3.99
5727 8175 6.644347 AGTCCACGAATCAGATGTAAAATCT 58.356 36.000 0.00 0.00 0.00 2.40
5848 8297 3.795623 TCATGTTTACTACTCGCTCCC 57.204 47.619 0.00 0.00 0.00 4.30
5851 8300 6.026947 AGAAGTTCATGTTTACTACTCGCT 57.973 37.500 5.50 0.00 0.00 4.93
5852 8301 6.707599 AAGAAGTTCATGTTTACTACTCGC 57.292 37.500 5.50 0.00 0.00 5.03
5871 8320 7.209475 CCCTGCAACTTCTGAAAATAAAAGAA 58.791 34.615 0.00 0.00 0.00 2.52
5873 8322 5.406477 GCCCTGCAACTTCTGAAAATAAAAG 59.594 40.000 0.00 0.00 0.00 2.27
5878 8327 2.560105 GAGCCCTGCAACTTCTGAAAAT 59.440 45.455 0.00 0.00 0.00 1.82
5977 8448 0.395173 AACAGGCGACCAGGTTTGTT 60.395 50.000 0.00 0.29 0.00 2.83
6000 8472 3.492313 GTTCAGATAAAGCAAAGCACGG 58.508 45.455 0.00 0.00 0.00 4.94
6004 8476 5.376854 TCTTGGTTCAGATAAAGCAAAGC 57.623 39.130 3.29 0.00 43.67 3.51
6034 8517 6.117911 TGTTGTATGATAAGCCAAACATCG 57.882 37.500 0.00 0.00 0.00 3.84
6046 8531 4.568804 CCACCACCCCTTTGTTGTATGATA 60.569 45.833 0.00 0.00 0.00 2.15
6049 8534 1.892474 CCACCACCCCTTTGTTGTATG 59.108 52.381 0.00 0.00 0.00 2.39
6103 8590 2.753452 GACCTCAGGATCACTCACGTTA 59.247 50.000 0.00 0.00 0.00 3.18
6165 8652 2.094894 CACAGAGCGTTTCATCATCACC 59.905 50.000 0.00 0.00 0.00 4.02
6194 8682 2.029380 CAGATGTAGTTGTGACGACCCA 60.029 50.000 0.00 0.00 31.23 4.51
6197 8685 5.161358 TGATTCAGATGTAGTTGTGACGAC 58.839 41.667 0.00 0.00 32.70 4.34
6198 8686 5.385509 TGATTCAGATGTAGTTGTGACGA 57.614 39.130 0.00 0.00 0.00 4.20
6199 8687 5.807011 TGATGATTCAGATGTAGTTGTGACG 59.193 40.000 0.00 0.00 0.00 4.35
6232 9525 1.346068 GACCAGGTTCAGAGTTGCTCT 59.654 52.381 0.00 0.00 42.11 4.09
6263 10280 5.559770 TGAGATATGTGAGAACCAGCAAAA 58.440 37.500 0.00 0.00 0.00 2.44
6292 10309 6.715718 AGTACTACACTGAAGAAAGCTAGTGA 59.284 38.462 16.93 2.70 42.28 3.41
6294 10311 7.664731 TGTAGTACTACACTGAAGAAAGCTAGT 59.335 37.037 27.99 0.00 40.77 2.57
6296 10313 7.991084 TGTAGTACTACACTGAAGAAAGCTA 57.009 36.000 27.99 4.02 40.77 3.32
6383 10417 6.554419 CAATGGGTATGGCAAATCATATACG 58.446 40.000 0.00 0.00 32.93 3.06
6384 10418 6.332630 GCAATGGGTATGGCAAATCATATAC 58.667 40.000 0.00 0.00 33.19 1.47
6385 10419 5.421693 GGCAATGGGTATGGCAAATCATATA 59.578 40.000 0.00 0.00 42.45 0.86
6386 10420 4.223477 GGCAATGGGTATGGCAAATCATAT 59.777 41.667 0.00 0.00 42.45 1.78
6400 10434 3.252554 TGGAAGTAAAAGGCAATGGGT 57.747 42.857 0.00 0.00 0.00 4.51
6446 10761 5.078949 TGATGATGTCTTTTGTGGTGGAAT 58.921 37.500 0.00 0.00 0.00 3.01
6447 10762 4.468713 TGATGATGTCTTTTGTGGTGGAA 58.531 39.130 0.00 0.00 0.00 3.53
6457 10772 2.225091 TGGGGTTGCTGATGATGTCTTT 60.225 45.455 0.00 0.00 0.00 2.52
6470 10789 1.071299 CTTTGGCCTTTGGGGTTGC 59.929 57.895 3.32 0.00 37.43 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.