Multiple sequence alignment - TraesCS6D01G080900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G080900 chr6D 100.000 2800 0 0 1 2800 46777835 46780634 0.000000e+00 5171.0
1 TraesCS6D01G080900 chr6D 100.000 2525 0 0 3117 5641 46780951 46783475 0.000000e+00 4663.0
2 TraesCS6D01G080900 chr6D 91.667 2472 168 23 3177 5640 348716553 348718994 0.000000e+00 3389.0
3 TraesCS6D01G080900 chr6D 100.000 1809 0 0 5688 7496 46783522 46785330 0.000000e+00 3341.0
4 TraesCS6D01G080900 chr6D 81.397 1317 224 16 496 1795 46443414 46444726 0.000000e+00 1055.0
5 TraesCS6D01G080900 chr6D 92.388 670 41 7 2081 2742 122076997 122077664 0.000000e+00 946.0
6 TraesCS6D01G080900 chr6D 92.109 659 46 4 2081 2734 136146585 136145928 0.000000e+00 924.0
7 TraesCS6D01G080900 chr6D 90.541 666 56 5 2081 2741 238814362 238815025 0.000000e+00 874.0
8 TraesCS6D01G080900 chr6D 88.531 715 50 13 2081 2788 351731386 351732075 0.000000e+00 837.0
9 TraesCS6D01G080900 chr6D 87.977 707 68 13 2080 2782 426811257 426811950 0.000000e+00 819.0
10 TraesCS6D01G080900 chr6D 90.630 619 51 6 2081 2695 426803720 426804335 0.000000e+00 815.0
11 TraesCS6D01G080900 chr6D 86.639 726 79 15 2081 2794 430834011 430834730 0.000000e+00 787.0
12 TraesCS6D01G080900 chr6D 91.873 566 40 5 2080 2641 461742114 461741551 0.000000e+00 785.0
13 TraesCS6D01G080900 chr6D 91.873 566 40 5 2080 2641 461757008 461756445 0.000000e+00 785.0
14 TraesCS6D01G080900 chr6D 89.258 633 59 9 2081 2708 147493696 147494324 0.000000e+00 784.0
15 TraesCS6D01G080900 chr6D 89.338 619 56 8 2081 2695 415732600 415733212 0.000000e+00 769.0
16 TraesCS6D01G080900 chr6D 87.294 669 66 17 2080 2741 395123677 395123021 0.000000e+00 747.0
17 TraesCS6D01G080900 chr6D 85.953 719 75 23 2081 2789 395181367 395180665 0.000000e+00 745.0
18 TraesCS6D01G080900 chr6D 85.385 650 71 6 6730 7377 46445097 46445724 0.000000e+00 652.0
19 TraesCS6D01G080900 chr6D 90.909 110 10 0 7367 7476 46445750 46445859 1.690000e-31 148.0
20 TraesCS6D01G080900 chr2D 91.779 2530 176 17 3117 5641 521390939 521388437 0.000000e+00 3491.0
21 TraesCS6D01G080900 chr2D 90.134 2534 212 22 3117 5640 478445581 478443076 0.000000e+00 3260.0
22 TraesCS6D01G080900 chr2D 89.913 2419 205 23 3117 5525 478438102 478435713 0.000000e+00 3079.0
23 TraesCS6D01G080900 chr2D 96.360 1044 35 3 5688 6730 316933904 316932863 0.000000e+00 1714.0
24 TraesCS6D01G080900 chr2D 96.257 1042 35 4 5688 6729 486155578 486154541 0.000000e+00 1705.0
25 TraesCS6D01G080900 chr2D 96.000 1050 38 4 5688 6735 316926357 316925310 0.000000e+00 1703.0
26 TraesCS6D01G080900 chr2D 92.342 679 43 7 2081 2754 103958966 103959640 0.000000e+00 957.0
27 TraesCS6D01G080900 chr4D 92.149 2471 159 17 3177 5641 173144842 173147283 0.000000e+00 3456.0
28 TraesCS6D01G080900 chr4D 92.842 2333 152 8 3312 5641 293121239 293118919 0.000000e+00 3369.0
29 TraesCS6D01G080900 chr4D 96.077 1045 36 5 5688 6730 494417646 494418687 0.000000e+00 1698.0
30 TraesCS6D01G080900 chr4D 86.849 730 69 25 2080 2800 108068207 108067496 0.000000e+00 791.0
31 TraesCS6D01G080900 chr4D 87.988 666 67 10 2080 2741 203013998 203014654 0.000000e+00 774.0
32 TraesCS6D01G080900 chr7D 90.820 2538 178 31 3117 5640 323092004 323094500 0.000000e+00 3345.0
33 TraesCS6D01G080900 chr7D 92.506 2322 155 10 3319 5637 217156612 217154307 0.000000e+00 3306.0
34 TraesCS6D01G080900 chr7D 91.369 2410 184 19 3237 5638 481528859 481526466 0.000000e+00 3277.0
35 TraesCS6D01G080900 chr7D 96.169 1044 35 5 5688 6729 412190378 412189338 0.000000e+00 1701.0
36 TraesCS6D01G080900 chr7D 87.783 1367 118 27 3117 4473 323084914 323086241 0.000000e+00 1554.0
37 TraesCS6D01G080900 chr7D 92.286 713 46 6 2080 2787 474827540 474828248 0.000000e+00 1003.0
38 TraesCS6D01G080900 chr7D 92.687 670 41 5 2081 2743 459208347 459209015 0.000000e+00 959.0
39 TraesCS6D01G080900 chr5D 91.232 2475 177 23 3174 5640 126814447 126816889 0.000000e+00 3332.0
40 TraesCS6D01G080900 chr5D 90.382 2537 197 30 3117 5641 131498114 131500615 0.000000e+00 3290.0
41 TraesCS6D01G080900 chr5D 95.924 1055 34 8 5688 6738 203840497 203839448 0.000000e+00 1701.0
42 TraesCS6D01G080900 chr5D 96.069 1043 35 4 5688 6729 126150854 126149817 0.000000e+00 1694.0
43 TraesCS6D01G080900 chr5D 92.529 696 42 7 2080 2769 114505722 114506413 0.000000e+00 989.0
44 TraesCS6D01G080900 chr5D 91.132 733 51 12 2077 2800 349022499 349023226 0.000000e+00 981.0
45 TraesCS6D01G080900 chr5D 91.218 706 51 8 2080 2780 48909573 48910272 0.000000e+00 950.0
46 TraesCS6D01G080900 chr5D 91.198 693 50 8 2081 2767 297748094 297747407 0.000000e+00 931.0
47 TraesCS6D01G080900 chr5D 92.610 636 37 7 2080 2712 114513125 114513753 0.000000e+00 905.0
48 TraesCS6D01G080900 chr5D 89.533 707 57 11 2080 2778 374107333 374108030 0.000000e+00 880.0
49 TraesCS6D01G080900 chr5D 89.511 696 62 7 2080 2769 374100011 374100701 0.000000e+00 870.0
50 TraesCS6D01G080900 chr1D 92.029 2346 169 9 3298 5638 387735441 387737773 0.000000e+00 3280.0
51 TraesCS6D01G080900 chr1D 92.182 2328 167 6 3298 5622 387699245 387701560 0.000000e+00 3277.0
52 TraesCS6D01G080900 chr1D 96.391 1053 36 2 5688 6739 440453373 440452322 0.000000e+00 1733.0
53 TraesCS6D01G080900 chr1D 89.715 632 56 9 2081 2708 457896573 457895947 0.000000e+00 798.0
54 TraesCS6D01G080900 chr1D 89.342 638 59 9 2080 2711 216338365 216337731 0.000000e+00 793.0
55 TraesCS6D01G080900 chr3D 89.547 2382 215 32 3271 5639 473030955 473033315 0.000000e+00 2988.0
56 TraesCS6D01G080900 chr3D 83.405 1169 138 25 3225 4382 521544701 521545824 0.000000e+00 1033.0
57 TraesCS6D01G080900 chr3D 77.207 1733 314 53 125 1789 569894699 569896418 0.000000e+00 937.0
58 TraesCS6D01G080900 chr3D 77.106 1769 300 68 97 1798 567412954 567411224 0.000000e+00 926.0
59 TraesCS6D01G080900 chr3D 77.660 282 40 16 128 402 570148139 570147874 4.690000e-32 150.0
60 TraesCS6D01G080900 chrUn 96.103 1052 36 3 5688 6738 295006018 295004971 0.000000e+00 1711.0
61 TraesCS6D01G080900 chrUn 91.386 534 46 0 2081 2614 11060698 11061231 0.000000e+00 732.0
62 TraesCS6D01G080900 chrUn 90.299 536 49 3 2081 2614 11068592 11068058 0.000000e+00 699.0
63 TraesCS6D01G080900 chrUn 90.909 517 46 1 2080 2595 271945840 271945324 0.000000e+00 693.0
64 TraesCS6D01G080900 chrUn 86.572 633 69 11 2077 2706 306801659 306802278 0.000000e+00 684.0
65 TraesCS6D01G080900 chrUn 86.572 633 69 11 2077 2706 450245288 450245907 0.000000e+00 684.0
66 TraesCS6D01G080900 chrUn 90.347 518 48 2 2079 2595 80483445 80483961 0.000000e+00 678.0
67 TraesCS6D01G080900 chrUn 90.329 517 49 1 2080 2595 399615566 399616082 0.000000e+00 676.0
68 TraesCS6D01G080900 chrUn 88.434 562 62 2 2081 2639 186096255 186096816 0.000000e+00 675.0
69 TraesCS6D01G080900 chrUn 88.455 563 60 4 2081 2639 356257509 356256948 0.000000e+00 675.0
70 TraesCS6D01G080900 chrUn 86.972 568 66 8 2080 2641 461898134 461897569 3.820000e-177 632.0
71 TraesCS6D01G080900 chrUn 78.000 300 44 21 2499 2790 139161007 139161292 1.290000e-37 169.0
72 TraesCS6D01G080900 chrUn 75.806 310 47 11 106 402 364553369 364553663 1.700000e-26 132.0
73 TraesCS6D01G080900 chrUn 95.522 67 3 0 1656 1722 62329584 62329518 2.860000e-19 108.0
74 TraesCS6D01G080900 chrUn 95.522 67 3 0 1656 1722 62515383 62515317 2.860000e-19 108.0
75 TraesCS6D01G080900 chrUn 95.522 67 3 0 1656 1722 62574926 62574860 2.860000e-19 108.0
76 TraesCS6D01G080900 chrUn 95.312 64 3 0 1659 1722 62390810 62390747 1.330000e-17 102.0
77 TraesCS6D01G080900 chrUn 91.045 67 6 0 1656 1722 62446328 62446262 2.880000e-14 91.6
78 TraesCS6D01G080900 chr6B 82.625 1318 207 15 496 1795 114880284 114881597 0.000000e+00 1146.0
79 TraesCS6D01G080900 chr6B 82.683 1282 203 11 496 1762 115525421 115526698 0.000000e+00 1120.0
80 TraesCS6D01G080900 chr6B 82.232 1317 213 15 496 1795 115060752 115062064 0.000000e+00 1116.0
81 TraesCS6D01G080900 chr6B 86.211 776 95 7 6730 7496 115535736 115536508 0.000000e+00 830.0
82 TraesCS6D01G080900 chr6B 86.096 748 73 9 6730 7447 115024102 115024848 0.000000e+00 776.0
83 TraesCS6D01G080900 chr6B 86.838 661 71 11 6730 7377 115062438 115063095 0.000000e+00 725.0
84 TraesCS6D01G080900 chr6B 78.780 377 59 18 1 372 114879875 114880235 4.520000e-57 233.0
85 TraesCS6D01G080900 chr6B 77.895 380 53 18 1 367 115060344 115060705 2.740000e-49 207.0
86 TraesCS6D01G080900 chr3B 76.316 304 44 11 112 402 756825613 756825325 3.650000e-28 137.0
87 TraesCS6D01G080900 chr3B 76.604 265 34 11 151 402 756711160 756710911 3.670000e-23 121.0
88 TraesCS6D01G080900 chr3B 76.604 265 34 11 151 402 756745132 756744883 3.670000e-23 121.0
89 TraesCS6D01G080900 chr6A 95.522 67 3 0 1656 1722 4252649 4252715 2.860000e-19 108.0
90 TraesCS6D01G080900 chr6A 95.522 67 3 0 1656 1722 4302403 4302469 2.860000e-19 108.0
91 TraesCS6D01G080900 chr6A 95.522 67 3 0 1656 1722 4373058 4373124 2.860000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G080900 chr6D 46777835 46785330 7495 False 4391.666667 5171 100.000000 1 7496 3 chr6D.!!$F11 7495
1 TraesCS6D01G080900 chr6D 348716553 348718994 2441 False 3389.000000 3389 91.667000 3177 5640 1 chr6D.!!$F4 2463
2 TraesCS6D01G080900 chr6D 122076997 122077664 667 False 946.000000 946 92.388000 2081 2742 1 chr6D.!!$F1 661
3 TraesCS6D01G080900 chr6D 136145928 136146585 657 True 924.000000 924 92.109000 2081 2734 1 chr6D.!!$R1 653
4 TraesCS6D01G080900 chr6D 238814362 238815025 663 False 874.000000 874 90.541000 2081 2741 1 chr6D.!!$F3 660
5 TraesCS6D01G080900 chr6D 351731386 351732075 689 False 837.000000 837 88.531000 2081 2788 1 chr6D.!!$F5 707
6 TraesCS6D01G080900 chr6D 426811257 426811950 693 False 819.000000 819 87.977000 2080 2782 1 chr6D.!!$F8 702
7 TraesCS6D01G080900 chr6D 426803720 426804335 615 False 815.000000 815 90.630000 2081 2695 1 chr6D.!!$F7 614
8 TraesCS6D01G080900 chr6D 430834011 430834730 719 False 787.000000 787 86.639000 2081 2794 1 chr6D.!!$F9 713
9 TraesCS6D01G080900 chr6D 461741551 461742114 563 True 785.000000 785 91.873000 2080 2641 1 chr6D.!!$R4 561
10 TraesCS6D01G080900 chr6D 461756445 461757008 563 True 785.000000 785 91.873000 2080 2641 1 chr6D.!!$R5 561
11 TraesCS6D01G080900 chr6D 147493696 147494324 628 False 784.000000 784 89.258000 2081 2708 1 chr6D.!!$F2 627
12 TraesCS6D01G080900 chr6D 415732600 415733212 612 False 769.000000 769 89.338000 2081 2695 1 chr6D.!!$F6 614
13 TraesCS6D01G080900 chr6D 395123021 395123677 656 True 747.000000 747 87.294000 2080 2741 1 chr6D.!!$R2 661
14 TraesCS6D01G080900 chr6D 395180665 395181367 702 True 745.000000 745 85.953000 2081 2789 1 chr6D.!!$R3 708
15 TraesCS6D01G080900 chr6D 46443414 46445859 2445 False 618.333333 1055 85.897000 496 7476 3 chr6D.!!$F10 6980
16 TraesCS6D01G080900 chr2D 521388437 521390939 2502 True 3491.000000 3491 91.779000 3117 5641 1 chr2D.!!$R6 2524
17 TraesCS6D01G080900 chr2D 478443076 478445581 2505 True 3260.000000 3260 90.134000 3117 5640 1 chr2D.!!$R4 2523
18 TraesCS6D01G080900 chr2D 478435713 478438102 2389 True 3079.000000 3079 89.913000 3117 5525 1 chr2D.!!$R3 2408
19 TraesCS6D01G080900 chr2D 316932863 316933904 1041 True 1714.000000 1714 96.360000 5688 6730 1 chr2D.!!$R2 1042
20 TraesCS6D01G080900 chr2D 486154541 486155578 1037 True 1705.000000 1705 96.257000 5688 6729 1 chr2D.!!$R5 1041
21 TraesCS6D01G080900 chr2D 316925310 316926357 1047 True 1703.000000 1703 96.000000 5688 6735 1 chr2D.!!$R1 1047
22 TraesCS6D01G080900 chr2D 103958966 103959640 674 False 957.000000 957 92.342000 2081 2754 1 chr2D.!!$F1 673
23 TraesCS6D01G080900 chr4D 173144842 173147283 2441 False 3456.000000 3456 92.149000 3177 5641 1 chr4D.!!$F1 2464
24 TraesCS6D01G080900 chr4D 293118919 293121239 2320 True 3369.000000 3369 92.842000 3312 5641 1 chr4D.!!$R2 2329
25 TraesCS6D01G080900 chr4D 494417646 494418687 1041 False 1698.000000 1698 96.077000 5688 6730 1 chr4D.!!$F3 1042
26 TraesCS6D01G080900 chr4D 108067496 108068207 711 True 791.000000 791 86.849000 2080 2800 1 chr4D.!!$R1 720
27 TraesCS6D01G080900 chr4D 203013998 203014654 656 False 774.000000 774 87.988000 2080 2741 1 chr4D.!!$F2 661
28 TraesCS6D01G080900 chr7D 323092004 323094500 2496 False 3345.000000 3345 90.820000 3117 5640 1 chr7D.!!$F2 2523
29 TraesCS6D01G080900 chr7D 217154307 217156612 2305 True 3306.000000 3306 92.506000 3319 5637 1 chr7D.!!$R1 2318
30 TraesCS6D01G080900 chr7D 481526466 481528859 2393 True 3277.000000 3277 91.369000 3237 5638 1 chr7D.!!$R3 2401
31 TraesCS6D01G080900 chr7D 412189338 412190378 1040 True 1701.000000 1701 96.169000 5688 6729 1 chr7D.!!$R2 1041
32 TraesCS6D01G080900 chr7D 323084914 323086241 1327 False 1554.000000 1554 87.783000 3117 4473 1 chr7D.!!$F1 1356
33 TraesCS6D01G080900 chr7D 474827540 474828248 708 False 1003.000000 1003 92.286000 2080 2787 1 chr7D.!!$F4 707
34 TraesCS6D01G080900 chr7D 459208347 459209015 668 False 959.000000 959 92.687000 2081 2743 1 chr7D.!!$F3 662
35 TraesCS6D01G080900 chr5D 126814447 126816889 2442 False 3332.000000 3332 91.232000 3174 5640 1 chr5D.!!$F4 2466
36 TraesCS6D01G080900 chr5D 131498114 131500615 2501 False 3290.000000 3290 90.382000 3117 5641 1 chr5D.!!$F5 2524
37 TraesCS6D01G080900 chr5D 203839448 203840497 1049 True 1701.000000 1701 95.924000 5688 6738 1 chr5D.!!$R2 1050
38 TraesCS6D01G080900 chr5D 126149817 126150854 1037 True 1694.000000 1694 96.069000 5688 6729 1 chr5D.!!$R1 1041
39 TraesCS6D01G080900 chr5D 114505722 114506413 691 False 989.000000 989 92.529000 2080 2769 1 chr5D.!!$F2 689
40 TraesCS6D01G080900 chr5D 349022499 349023226 727 False 981.000000 981 91.132000 2077 2800 1 chr5D.!!$F6 723
41 TraesCS6D01G080900 chr5D 48909573 48910272 699 False 950.000000 950 91.218000 2080 2780 1 chr5D.!!$F1 700
42 TraesCS6D01G080900 chr5D 297747407 297748094 687 True 931.000000 931 91.198000 2081 2767 1 chr5D.!!$R3 686
43 TraesCS6D01G080900 chr5D 114513125 114513753 628 False 905.000000 905 92.610000 2080 2712 1 chr5D.!!$F3 632
44 TraesCS6D01G080900 chr5D 374107333 374108030 697 False 880.000000 880 89.533000 2080 2778 1 chr5D.!!$F8 698
45 TraesCS6D01G080900 chr5D 374100011 374100701 690 False 870.000000 870 89.511000 2080 2769 1 chr5D.!!$F7 689
46 TraesCS6D01G080900 chr1D 387735441 387737773 2332 False 3280.000000 3280 92.029000 3298 5638 1 chr1D.!!$F2 2340
47 TraesCS6D01G080900 chr1D 387699245 387701560 2315 False 3277.000000 3277 92.182000 3298 5622 1 chr1D.!!$F1 2324
48 TraesCS6D01G080900 chr1D 440452322 440453373 1051 True 1733.000000 1733 96.391000 5688 6739 1 chr1D.!!$R2 1051
49 TraesCS6D01G080900 chr1D 457895947 457896573 626 True 798.000000 798 89.715000 2081 2708 1 chr1D.!!$R3 627
50 TraesCS6D01G080900 chr1D 216337731 216338365 634 True 793.000000 793 89.342000 2080 2711 1 chr1D.!!$R1 631
51 TraesCS6D01G080900 chr3D 473030955 473033315 2360 False 2988.000000 2988 89.547000 3271 5639 1 chr3D.!!$F1 2368
52 TraesCS6D01G080900 chr3D 521544701 521545824 1123 False 1033.000000 1033 83.405000 3225 4382 1 chr3D.!!$F2 1157
53 TraesCS6D01G080900 chr3D 569894699 569896418 1719 False 937.000000 937 77.207000 125 1789 1 chr3D.!!$F3 1664
54 TraesCS6D01G080900 chr3D 567411224 567412954 1730 True 926.000000 926 77.106000 97 1798 1 chr3D.!!$R1 1701
55 TraesCS6D01G080900 chrUn 295004971 295006018 1047 True 1711.000000 1711 96.103000 5688 6738 1 chrUn.!!$R8 1050
56 TraesCS6D01G080900 chrUn 11060698 11061231 533 False 732.000000 732 91.386000 2081 2614 1 chrUn.!!$F1 533
57 TraesCS6D01G080900 chrUn 11068058 11068592 534 True 699.000000 699 90.299000 2081 2614 1 chrUn.!!$R1 533
58 TraesCS6D01G080900 chrUn 271945324 271945840 516 True 693.000000 693 90.909000 2080 2595 1 chrUn.!!$R7 515
59 TraesCS6D01G080900 chrUn 306801659 306802278 619 False 684.000000 684 86.572000 2077 2706 1 chrUn.!!$F5 629
60 TraesCS6D01G080900 chrUn 450245288 450245907 619 False 684.000000 684 86.572000 2077 2706 1 chrUn.!!$F8 629
61 TraesCS6D01G080900 chrUn 80483445 80483961 516 False 678.000000 678 90.347000 2079 2595 1 chrUn.!!$F2 516
62 TraesCS6D01G080900 chrUn 399615566 399616082 516 False 676.000000 676 90.329000 2080 2595 1 chrUn.!!$F7 515
63 TraesCS6D01G080900 chrUn 186096255 186096816 561 False 675.000000 675 88.434000 2081 2639 1 chrUn.!!$F4 558
64 TraesCS6D01G080900 chrUn 356256948 356257509 561 True 675.000000 675 88.455000 2081 2639 1 chrUn.!!$R9 558
65 TraesCS6D01G080900 chrUn 461897569 461898134 565 True 632.000000 632 86.972000 2080 2641 1 chrUn.!!$R10 561
66 TraesCS6D01G080900 chr6B 115525421 115526698 1277 False 1120.000000 1120 82.683000 496 1762 1 chr6B.!!$F2 1266
67 TraesCS6D01G080900 chr6B 115535736 115536508 772 False 830.000000 830 86.211000 6730 7496 1 chr6B.!!$F3 766
68 TraesCS6D01G080900 chr6B 115024102 115024848 746 False 776.000000 776 86.096000 6730 7447 1 chr6B.!!$F1 717
69 TraesCS6D01G080900 chr6B 114879875 114881597 1722 False 689.500000 1146 80.702500 1 1795 2 chr6B.!!$F4 1794
70 TraesCS6D01G080900 chr6B 115060344 115063095 2751 False 682.666667 1116 82.321667 1 7377 3 chr6B.!!$F5 7376

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 840 0.116342 TGACCCTGCCTTCCTCTACA 59.884 55.000 0.00 0.0 0.00 2.74 F
1933 2146 0.312102 CATGCTATCTCTCGCACGGA 59.688 55.000 0.00 0.0 39.21 4.69 F
2173 2409 0.397187 TTGCACTTTGCCATGCCATT 59.603 45.000 0.00 0.0 44.23 3.16 F
2220 2457 0.591994 TGCATCGCATTTGCATACGC 60.592 50.000 3.13 0.0 44.73 4.42 F
3327 3607 0.928451 GTGTGTTGCTTCGTTTCGCC 60.928 55.000 0.00 0.0 0.00 5.54 F
4474 4778 1.661341 CTTGCTAGCTGCCTAGTTGG 58.339 55.000 17.23 0.0 42.51 3.77 F
5172 5480 1.721926 GCTTCGTTCTATCGCTATGCC 59.278 52.381 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 2368 0.250467 ACGCAAGCAGATGACAAGGT 60.250 50.000 0.00 0.0 45.62 3.50 R
3309 3589 1.353804 GGCGAAACGAAGCAACACA 59.646 52.632 0.00 0.0 34.54 3.72 R
3310 3590 1.370051 GGGCGAAACGAAGCAACAC 60.370 57.895 0.00 0.0 34.54 3.32 R
3340 3620 2.616960 CATCCCGAGACGAACATTTCA 58.383 47.619 0.00 0.0 0.00 2.69 R
5026 5331 1.531264 CGAACGAATCCTCACGATCGT 60.531 52.381 16.60 16.6 44.78 3.73 R
5486 5798 0.233848 CAACCGTGTAAGGAACGCAC 59.766 55.000 0.00 0.0 39.69 5.34 R
6813 7137 0.531974 TCAAATGACTATCGCGGGGC 60.532 55.000 6.13 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.470983 AAAGCTCAGCTCTCCACTTC 57.529 50.000 0.00 0.00 38.25 3.01
40 41 0.896923 AGCTCAGCTCTCCACTTCAG 59.103 55.000 0.00 0.00 30.62 3.02
42 43 1.404047 GCTCAGCTCTCCACTTCAGTC 60.404 57.143 0.00 0.00 0.00 3.51
46 47 0.172352 GCTCTCCACTTCAGTCTCCG 59.828 60.000 0.00 0.00 0.00 4.63
54 55 2.493675 CACTTCAGTCTCCGATCTCCAA 59.506 50.000 0.00 0.00 0.00 3.53
56 57 1.095600 TCAGTCTCCGATCTCCAACG 58.904 55.000 0.00 0.00 0.00 4.10
59 60 2.032302 CAGTCTCCGATCTCCAACGTAG 59.968 54.545 0.00 0.00 0.00 3.51
61 62 0.317103 CTCCGATCTCCAACGTAGCG 60.317 60.000 0.00 0.00 0.00 4.26
62 63 0.745486 TCCGATCTCCAACGTAGCGA 60.745 55.000 0.00 0.00 0.00 4.93
78 79 1.002792 AGCGACGGTCAAAAAGAAAGC 60.003 47.619 9.10 0.03 0.00 3.51
80 81 2.793237 GCGACGGTCAAAAAGAAAGCAA 60.793 45.455 9.10 0.00 0.00 3.91
83 84 4.668289 GACGGTCAAAAAGAAAGCAAGAA 58.332 39.130 2.62 0.00 0.00 2.52
84 85 4.421058 ACGGTCAAAAAGAAAGCAAGAAC 58.579 39.130 0.00 0.00 0.00 3.01
86 87 3.242944 GGTCAAAAAGAAAGCAAGAACGC 59.757 43.478 0.00 0.00 0.00 4.84
87 88 4.105486 GTCAAAAAGAAAGCAAGAACGCT 58.895 39.130 0.00 0.00 46.67 5.07
89 90 2.125461 AAAGAAAGCAAGAACGCTGC 57.875 45.000 0.00 0.00 42.89 5.25
90 91 0.312102 AAGAAAGCAAGAACGCTGCC 59.688 50.000 0.00 0.00 42.89 4.85
91 92 1.441016 GAAAGCAAGAACGCTGCCG 60.441 57.895 0.00 0.00 42.89 5.69
92 93 3.542629 AAAGCAAGAACGCTGCCGC 62.543 57.895 0.00 0.00 42.89 6.53
117 118 2.487428 CAGCGACCTCAGACCTCG 59.513 66.667 0.00 0.00 0.00 4.63
120 121 3.062466 CGACCTCAGACCTCGCCA 61.062 66.667 0.00 0.00 0.00 5.69
126 127 2.765807 CAGACCTCGCCATCCCCT 60.766 66.667 0.00 0.00 0.00 4.79
183 187 5.786121 TTCCATTCCTCTTCTTCTCCATT 57.214 39.130 0.00 0.00 0.00 3.16
184 188 5.365021 TCCATTCCTCTTCTTCTCCATTC 57.635 43.478 0.00 0.00 0.00 2.67
188 192 4.626942 TCCTCTTCTTCTCCATTCCCTA 57.373 45.455 0.00 0.00 0.00 3.53
189 193 4.551671 TCCTCTTCTTCTCCATTCCCTAG 58.448 47.826 0.00 0.00 0.00 3.02
190 194 4.016105 TCCTCTTCTTCTCCATTCCCTAGT 60.016 45.833 0.00 0.00 0.00 2.57
191 195 5.195960 TCCTCTTCTTCTCCATTCCCTAGTA 59.804 44.000 0.00 0.00 0.00 1.82
192 196 5.900123 CCTCTTCTTCTCCATTCCCTAGTAA 59.100 44.000 0.00 0.00 0.00 2.24
253 268 5.399038 CCCTAGCTTGATTTCCCCTCATAAA 60.399 44.000 0.00 0.00 0.00 1.40
254 269 6.129179 CCTAGCTTGATTTCCCCTCATAAAA 58.871 40.000 0.00 0.00 0.00 1.52
260 275 7.069950 GCTTGATTTCCCCTCATAAAACCTAAT 59.930 37.037 0.00 0.00 0.00 1.73
263 278 8.977412 TGATTTCCCCTCATAAAACCTAATTTC 58.023 33.333 0.00 0.00 0.00 2.17
272 287 9.475620 CTCATAAAACCTAATTTCCCCTTACTT 57.524 33.333 0.00 0.00 0.00 2.24
274 289 6.829229 AAAACCTAATTTCCCCTTACTTCG 57.171 37.500 0.00 0.00 0.00 3.79
286 301 2.168496 CTTACTTCGACAGTGGAGGGA 58.832 52.381 9.58 0.00 35.97 4.20
287 302 1.835494 TACTTCGACAGTGGAGGGAG 58.165 55.000 9.58 0.00 35.97 4.30
292 307 1.990614 GACAGTGGAGGGAGGGGAC 60.991 68.421 0.00 0.00 0.00 4.46
293 308 2.122729 CAGTGGAGGGAGGGGACA 59.877 66.667 0.00 0.00 0.00 4.02
302 325 4.416738 GAGGGGACAGGGTGCTGC 62.417 72.222 0.00 0.00 0.00 5.25
310 346 2.365635 AGGGTGCTGCGATAGGGT 60.366 61.111 0.00 0.00 0.00 4.34
349 385 1.225704 CCAGCTGAGATTCCCCACC 59.774 63.158 17.39 0.00 0.00 4.61
351 387 2.514824 GCTGAGATTCCCCACCGC 60.515 66.667 0.00 0.00 0.00 5.68
367 403 3.074412 CACCGCTAACATCCAGTTTCTT 58.926 45.455 0.00 0.00 41.64 2.52
388 451 8.810652 TTCTTTTTCCATAACTTTGTGTATGC 57.189 30.769 0.00 0.00 0.00 3.14
400 463 1.485895 TGTGTATGCTATGCTGGCTGA 59.514 47.619 0.00 0.00 0.00 4.26
411 476 1.776063 TGCTGGCTGAATGGATGGATA 59.224 47.619 0.00 0.00 0.00 2.59
412 477 2.377531 TGCTGGCTGAATGGATGGATAT 59.622 45.455 0.00 0.00 0.00 1.63
424 490 9.841295 TGAATGGATGGATATATCATGTATGTG 57.159 33.333 14.60 0.00 0.00 3.21
459 531 4.083324 CGATACTTTTGCAACCACACTGAT 60.083 41.667 0.00 0.00 0.00 2.90
462 534 3.446873 ACTTTTGCAACCACACTGATTGA 59.553 39.130 0.00 0.00 0.00 2.57
466 538 3.286353 TGCAACCACACTGATTGAAGAA 58.714 40.909 0.00 0.00 0.00 2.52
467 539 3.698539 TGCAACCACACTGATTGAAGAAA 59.301 39.130 0.00 0.00 0.00 2.52
469 541 4.202050 GCAACCACACTGATTGAAGAAACT 60.202 41.667 0.00 0.00 0.00 2.66
471 569 6.294176 GCAACCACACTGATTGAAGAAACTAT 60.294 38.462 0.00 0.00 0.00 2.12
474 572 6.431234 ACCACACTGATTGAAGAAACTATTCC 59.569 38.462 0.00 0.00 36.12 3.01
475 573 6.656693 CCACACTGATTGAAGAAACTATTCCT 59.343 38.462 0.00 0.00 36.12 3.36
494 592 6.662865 TTCCTTTAGTTTCATGCATTTCCA 57.337 33.333 0.00 0.00 0.00 3.53
500 598 9.158233 CTTTAGTTTCATGCATTTCCATTGATT 57.842 29.630 0.00 0.00 0.00 2.57
501 599 9.504708 TTTAGTTTCATGCATTTCCATTGATTT 57.495 25.926 0.00 0.00 0.00 2.17
511 609 8.076781 TGCATTTCCATTGATTTCATTTGTTTG 58.923 29.630 0.00 0.00 0.00 2.93
536 634 0.249447 GGCTGTTGTTGTTTCAGGGC 60.249 55.000 0.00 0.00 0.00 5.19
555 653 1.272147 GCCAATCCTGTTCCCAACTCT 60.272 52.381 0.00 0.00 0.00 3.24
559 657 0.687354 TCCTGTTCCCAACTCTCTGC 59.313 55.000 0.00 0.00 0.00 4.26
569 667 0.969149 AACTCTCTGCGTGTGGATGA 59.031 50.000 0.00 0.00 0.00 2.92
581 679 1.202915 TGTGGATGAAAAGAGGCTGCA 60.203 47.619 0.50 0.00 0.00 4.41
631 729 0.926155 CAAGGTGCTCGACGATGATG 59.074 55.000 0.00 0.00 0.00 3.07
636 734 0.382158 TGCTCGACGATGATGACCTC 59.618 55.000 0.00 0.00 0.00 3.85
655 753 2.557924 CTCCTCATTGAGATCCTCCTCG 59.442 54.545 15.36 0.00 35.99 4.63
662 760 1.880675 TGAGATCCTCCTCGTAATCGC 59.119 52.381 0.00 0.00 35.99 4.58
665 763 0.962489 ATCCTCCTCGTAATCGCCTG 59.038 55.000 0.00 0.00 36.96 4.85
683 781 2.928396 CCCCACCACCCTCGTCTT 60.928 66.667 0.00 0.00 0.00 3.01
684 782 2.526046 CCCCACCACCCTCGTCTTT 61.526 63.158 0.00 0.00 0.00 2.52
690 788 4.699522 ACCCTCGTCTTTGCCGCC 62.700 66.667 0.00 0.00 0.00 6.13
698 796 2.358737 CTTTGCCGCCCTCGTCTT 60.359 61.111 0.00 0.00 0.00 3.01
711 809 1.205064 CGTCTTCAAGCGCTGGTTG 59.795 57.895 12.58 5.82 41.65 3.77
740 838 0.710588 TCTGACCCTGCCTTCCTCTA 59.289 55.000 0.00 0.00 0.00 2.43
742 840 0.116342 TGACCCTGCCTTCCTCTACA 59.884 55.000 0.00 0.00 0.00 2.74
748 846 1.552337 CTGCCTTCCTCTACAGCTTCA 59.448 52.381 0.00 0.00 0.00 3.02
797 895 3.370953 GGCTTCTATGTCAACACCAGGAT 60.371 47.826 0.00 0.00 0.00 3.24
848 952 1.823250 GCAACCCCCAGAGTTTGATGT 60.823 52.381 0.00 0.00 0.00 3.06
855 959 3.338249 CCCAGAGTTTGATGTCGTCATT 58.662 45.455 0.00 0.00 36.54 2.57
859 963 1.732259 AGTTTGATGTCGTCATTCGCC 59.268 47.619 0.00 0.00 36.54 5.54
870 974 2.046892 ATTCGCCGTGCAAGCTCT 60.047 55.556 8.23 0.00 0.00 4.09
874 978 1.227089 CGCCGTGCAAGCTCTATCT 60.227 57.895 8.23 0.00 0.00 1.98
904 1020 5.882557 ACACATAAACTCATCTTGGATGACC 59.117 40.000 6.17 0.00 0.00 4.02
918 1034 3.117926 TGGATGACCGGAATGACATCATT 60.118 43.478 9.46 6.82 43.11 2.57
920 1036 4.023707 GGATGACCGGAATGACATCATTTC 60.024 45.833 9.46 5.75 45.72 2.17
929 1045 5.279406 GGAATGACATCATTTCCACCAACAA 60.279 40.000 8.47 0.00 45.72 2.83
956 1072 2.169769 AGAACTGTGACGAAGAACCCAA 59.830 45.455 0.00 0.00 0.00 4.12
959 1075 4.345859 ACTGTGACGAAGAACCCAAATA 57.654 40.909 0.00 0.00 0.00 1.40
974 1090 9.297037 AGAACCCAAATAAATACATATAGTGCC 57.703 33.333 0.00 0.00 0.00 5.01
998 1114 1.516892 CACTCTGCCCTGAGAGAGC 59.483 63.158 5.84 0.00 41.95 4.09
1007 1123 1.415659 CCCTGAGAGAGCCATGGTTAG 59.584 57.143 14.67 0.61 0.00 2.34
1016 1132 1.602237 CCATGGTTAGCGTCCCACT 59.398 57.895 2.57 0.00 32.49 4.00
1041 1157 3.958147 ATGCCACGAACGCCAGGAG 62.958 63.158 0.00 0.00 0.00 3.69
1058 1174 2.239907 AGGAGGGCTATTTCCACACTTC 59.760 50.000 0.00 0.00 35.88 3.01
1064 1180 4.192317 GGCTATTTCCACACTTCCAGTAG 58.808 47.826 0.00 0.00 0.00 2.57
1071 1187 2.494073 CCACACTTCCAGTAGACTCCTC 59.506 54.545 0.00 0.00 0.00 3.71
1102 1218 2.450345 GGCGACGGCTTTTCCTACG 61.450 63.158 15.00 0.00 39.81 3.51
1108 1224 3.433513 ACGGCTTTTCCTACGTCTATC 57.566 47.619 0.00 0.00 33.92 2.08
1110 1226 3.446516 ACGGCTTTTCCTACGTCTATCTT 59.553 43.478 0.00 0.00 33.92 2.40
1111 1227 3.797256 CGGCTTTTCCTACGTCTATCTTG 59.203 47.826 0.00 0.00 0.00 3.02
1113 1229 5.602628 GGCTTTTCCTACGTCTATCTTGAT 58.397 41.667 0.00 0.00 0.00 2.57
1122 1238 7.888546 TCCTACGTCTATCTTGATATGGAATCA 59.111 37.037 0.00 0.00 0.00 2.57
1149 1271 5.769662 TGGAACAAAATCTAGAGTGCACATT 59.230 36.000 21.04 9.03 31.92 2.71
1163 1285 8.213518 AGAGTGCACATTTATATGTTACAAGG 57.786 34.615 21.04 0.00 42.29 3.61
1179 1301 2.203153 GGTGGTGTCTGGTGCGTT 60.203 61.111 0.00 0.00 0.00 4.84
1211 1333 0.546122 ACAACACAGCTCCCTTGTCA 59.454 50.000 0.00 0.00 0.00 3.58
1217 1339 1.845205 AGCTCCCTTGTCAGCCACT 60.845 57.895 0.00 0.00 36.17 4.00
1218 1340 0.545309 AGCTCCCTTGTCAGCCACTA 60.545 55.000 0.00 0.00 36.17 2.74
1228 1350 5.705441 CCTTGTCAGCCACTAAAACTGAATA 59.295 40.000 0.00 0.00 41.80 1.75
1233 1355 7.039293 TGTCAGCCACTAAAACTGAATACTCTA 60.039 37.037 0.00 0.00 41.80 2.43
1238 1360 7.413109 GCCACTAAAACTGAATACTCTACTTGC 60.413 40.741 0.00 0.00 0.00 4.01
1259 1381 9.851686 ACTTGCTGACAATAAAATCTATATGGA 57.148 29.630 0.00 0.00 34.61 3.41
1268 1390 5.669798 AAAATCTATATGGAAGCCACCCT 57.330 39.130 0.00 0.00 35.80 4.34
1295 1417 7.729116 AGTGAAATTCTTGTGTTGGATTTGAT 58.271 30.769 0.00 0.00 0.00 2.57
1320 1442 6.012745 AGCCTTAAGTTTCTCCACATTTCAT 58.987 36.000 0.97 0.00 0.00 2.57
1326 1448 2.988010 TCTCCACATTTCATCTCCCG 57.012 50.000 0.00 0.00 0.00 5.14
1348 1470 2.755103 CAAGGGCTTCTTATTGGTGACC 59.245 50.000 0.00 0.00 33.68 4.02
1350 1472 2.582636 AGGGCTTCTTATTGGTGACCAT 59.417 45.455 4.56 0.00 31.53 3.55
1351 1473 2.689983 GGGCTTCTTATTGGTGACCATG 59.310 50.000 4.56 0.00 31.53 3.66
1381 1503 2.038659 TGTCACGGGCAGATGATGATA 58.961 47.619 0.00 0.00 0.00 2.15
1383 1505 1.344438 TCACGGGCAGATGATGATACC 59.656 52.381 0.00 0.00 0.00 2.73
1407 1529 5.007039 CGGTGTGTATCTCATTCATTTGGAG 59.993 44.000 0.00 0.00 0.00 3.86
1412 1534 6.481644 GTGTATCTCATTCATTTGGAGGAGTC 59.518 42.308 0.82 0.00 33.15 3.36
1415 1537 4.118410 CTCATTCATTTGGAGGAGTCTCG 58.882 47.826 0.00 0.00 40.85 4.04
1431 1553 1.712977 CTCGGCTTTGCATCTGGCTC 61.713 60.000 0.00 0.00 45.15 4.70
1489 1612 2.745821 TGCTTTCATGAGATGTGTGCTC 59.254 45.455 0.00 0.00 0.00 4.26
1495 1618 3.692593 TCATGAGATGTGTGCTCAATTGG 59.307 43.478 5.42 0.00 44.71 3.16
1497 1620 2.040145 TGAGATGTGTGCTCAATTGGGA 59.960 45.455 10.25 0.00 39.29 4.37
1501 1624 2.596346 TGTGTGCTCAATTGGGAATGT 58.404 42.857 10.25 0.00 0.00 2.71
1507 1630 4.883585 GTGCTCAATTGGGAATGTCTGATA 59.116 41.667 10.25 0.00 0.00 2.15
1519 1642 6.211515 GGAATGTCTGATATCACAAATTGGC 58.788 40.000 0.00 0.00 0.00 4.52
1523 1646 5.711506 TGTCTGATATCACAAATTGGCTGTT 59.288 36.000 0.00 0.00 0.00 3.16
1524 1647 6.209192 TGTCTGATATCACAAATTGGCTGTTT 59.791 34.615 0.00 0.00 0.00 2.83
1539 1662 3.068165 GGCTGTTTATAAATCAGGTGGGC 59.932 47.826 20.01 11.61 0.00 5.36
1564 1687 2.774439 TGCCGAGTTTCTTTTCTTGC 57.226 45.000 0.00 0.00 0.00 4.01
1574 1697 3.507162 TCTTTTCTTGCAGATGGGTCA 57.493 42.857 0.00 0.00 0.00 4.02
1575 1698 4.038271 TCTTTTCTTGCAGATGGGTCAT 57.962 40.909 0.00 0.00 0.00 3.06
1614 1737 1.024271 TCAAGTGCAGGAAGTTGTGC 58.976 50.000 0.00 0.60 40.29 4.57
1622 1745 2.417243 GCAGGAAGTTGTGCAAAGTGTT 60.417 45.455 0.00 0.00 39.62 3.32
1623 1746 3.181491 GCAGGAAGTTGTGCAAAGTGTTA 60.181 43.478 0.00 0.00 39.62 2.41
1630 1759 3.857549 TGTGCAAAGTGTTAACAAGCA 57.142 38.095 10.51 14.75 0.00 3.91
1643 1772 3.947910 AACAAGCAAGGATCAATGGTG 57.052 42.857 0.00 0.00 0.00 4.17
1699 1828 0.674581 CACATTCCCTGCGCTCAAGA 60.675 55.000 9.73 0.00 0.00 3.02
1708 1837 1.865970 CTGCGCTCAAGAATGATCCTC 59.134 52.381 9.73 0.00 34.37 3.71
1725 1854 2.693074 TCCTCCAAGGTTTGTCTTTTGC 59.307 45.455 0.00 0.00 36.53 3.68
1741 1870 1.337118 TTGCCCTTTGGGTGATGTTC 58.663 50.000 4.42 0.00 46.51 3.18
1748 1877 4.461198 CCTTTGGGTGATGTTCCTATACC 58.539 47.826 0.00 0.00 0.00 2.73
1762 1891 6.829298 TGTTCCTATACCTTGTTTTTGTGTGA 59.171 34.615 0.00 0.00 0.00 3.58
1763 1892 6.870971 TCCTATACCTTGTTTTTGTGTGAC 57.129 37.500 0.00 0.00 0.00 3.67
1764 1893 6.358178 TCCTATACCTTGTTTTTGTGTGACA 58.642 36.000 0.00 0.00 0.00 3.58
1765 1894 6.829298 TCCTATACCTTGTTTTTGTGTGACAA 59.171 34.615 0.00 0.00 36.11 3.18
1771 1900 7.327214 ACCTTGTTTTTGTGTGACAACATTAT 58.673 30.769 0.00 0.00 37.90 1.28
1773 1902 8.967218 CCTTGTTTTTGTGTGACAACATTATAG 58.033 33.333 0.00 0.00 37.90 1.31
1774 1903 7.922505 TGTTTTTGTGTGACAACATTATAGC 57.077 32.000 0.00 0.00 37.90 2.97
1775 1904 7.484140 TGTTTTTGTGTGACAACATTATAGCA 58.516 30.769 0.00 0.00 37.90 3.49
1776 1905 7.647318 TGTTTTTGTGTGACAACATTATAGCAG 59.353 33.333 0.00 0.00 37.90 4.24
1778 1907 6.875948 TTGTGTGACAACATTATAGCAGTT 57.124 33.333 0.00 0.00 38.92 3.16
1826 2036 1.337167 GGAATGGTGGTTTGCTTCTGC 60.337 52.381 0.00 0.00 40.20 4.26
1842 2052 1.085091 CTGCACTGTGATCCTCAAGC 58.915 55.000 12.86 0.00 0.00 4.01
1854 2064 5.010922 GTGATCCTCAAGCTATCATGTCTCT 59.989 44.000 0.00 0.00 32.60 3.10
1855 2065 5.601729 TGATCCTCAAGCTATCATGTCTCTT 59.398 40.000 0.00 0.00 0.00 2.85
1857 2067 7.288621 TGATCCTCAAGCTATCATGTCTCTTAA 59.711 37.037 0.00 0.00 0.00 1.85
1859 2069 8.712228 TCCTCAAGCTATCATGTCTCTTAATA 57.288 34.615 0.00 0.00 0.00 0.98
1860 2070 8.580720 TCCTCAAGCTATCATGTCTCTTAATAC 58.419 37.037 0.00 0.00 0.00 1.89
1919 2132 3.947910 ATGTGTTTTGCTTAGCATGCT 57.052 38.095 25.99 25.99 38.76 3.79
1920 2133 6.507958 TTATGTGTTTTGCTTAGCATGCTA 57.492 33.333 23.52 23.52 38.76 3.49
1924 2137 5.163723 TGTGTTTTGCTTAGCATGCTATCTC 60.164 40.000 27.35 18.40 38.76 2.75
1925 2138 5.065731 GTGTTTTGCTTAGCATGCTATCTCT 59.934 40.000 27.35 4.02 38.76 3.10
1926 2139 5.295292 TGTTTTGCTTAGCATGCTATCTCTC 59.705 40.000 27.35 14.62 38.76 3.20
1928 2141 1.991965 GCTTAGCATGCTATCTCTCGC 59.008 52.381 27.35 17.65 0.00 5.03
1929 2142 2.608998 GCTTAGCATGCTATCTCTCGCA 60.609 50.000 27.35 9.57 40.87 5.10
1930 2143 2.713895 TAGCATGCTATCTCTCGCAC 57.286 50.000 23.52 0.00 39.21 5.34
1931 2144 0.318529 AGCATGCTATCTCTCGCACG 60.319 55.000 21.21 0.00 39.21 5.34
1932 2145 1.280886 GCATGCTATCTCTCGCACGG 61.281 60.000 11.37 0.00 39.21 4.94
1933 2146 0.312102 CATGCTATCTCTCGCACGGA 59.688 55.000 0.00 0.00 39.21 4.69
1934 2147 1.067985 CATGCTATCTCTCGCACGGAT 60.068 52.381 0.00 0.00 39.21 4.18
1935 2148 0.312102 TGCTATCTCTCGCACGGATG 59.688 55.000 0.00 0.00 0.00 3.51
1945 2158 3.079131 GCACGGATGCCAACTATGA 57.921 52.632 0.00 0.00 46.97 2.15
1946 2159 1.378531 GCACGGATGCCAACTATGAA 58.621 50.000 0.00 0.00 46.97 2.57
1947 2160 1.331756 GCACGGATGCCAACTATGAAG 59.668 52.381 0.00 0.00 46.97 3.02
1948 2161 1.331756 CACGGATGCCAACTATGAAGC 59.668 52.381 0.00 0.00 0.00 3.86
1949 2162 0.583438 CGGATGCCAACTATGAAGCG 59.417 55.000 0.00 0.00 0.00 4.68
1950 2163 1.668419 GGATGCCAACTATGAAGCGT 58.332 50.000 0.00 0.00 0.00 5.07
1951 2164 2.801699 CGGATGCCAACTATGAAGCGTA 60.802 50.000 0.00 0.00 0.00 4.42
1952 2165 3.202906 GGATGCCAACTATGAAGCGTAA 58.797 45.455 0.00 0.00 0.00 3.18
1953 2166 3.625764 GGATGCCAACTATGAAGCGTAAA 59.374 43.478 0.00 0.00 0.00 2.01
1968 2181 5.385509 AGCGTAAATTTTACACTGGCATT 57.614 34.783 17.14 0.00 0.00 3.56
1991 2204 6.732531 TCTTGTGTTTATGCATCTCTTCTG 57.267 37.500 0.19 0.00 0.00 3.02
1992 2205 6.466812 TCTTGTGTTTATGCATCTCTTCTGA 58.533 36.000 0.19 0.00 0.00 3.27
1994 2207 7.609146 TCTTGTGTTTATGCATCTCTTCTGATT 59.391 33.333 0.19 0.00 0.00 2.57
1995 2208 7.312657 TGTGTTTATGCATCTCTTCTGATTC 57.687 36.000 0.19 0.00 0.00 2.52
1996 2209 6.880529 TGTGTTTATGCATCTCTTCTGATTCA 59.119 34.615 0.19 0.00 0.00 2.57
1997 2210 7.065443 TGTGTTTATGCATCTCTTCTGATTCAG 59.935 37.037 0.19 7.38 0.00 3.02
1998 2211 7.279536 GTGTTTATGCATCTCTTCTGATTCAGA 59.720 37.037 12.38 12.38 38.87 3.27
2004 2217 6.474819 CATCTCTTCTGATTCAGATGCATC 57.525 41.667 19.37 19.37 40.39 3.91
2005 2218 5.609533 TCTCTTCTGATTCAGATGCATCA 57.390 39.130 27.81 8.60 40.39 3.07
2006 2219 5.358090 TCTCTTCTGATTCAGATGCATCAC 58.642 41.667 27.81 13.50 40.39 3.06
2012 2231 3.619929 TGATTCAGATGCATCACACGAAG 59.380 43.478 27.81 8.86 0.00 3.79
2018 2237 3.681897 AGATGCATCACACGAAGTTCTTC 59.318 43.478 27.81 2.80 41.61 2.87
2030 2265 9.021863 CACACGAAGTTCTTCCTCTTATAATAC 57.978 37.037 0.56 0.00 41.61 1.89
2048 2283 5.621197 AATACAATCTAACAACTTGCGCA 57.379 34.783 5.66 5.66 0.00 6.09
2049 2284 3.542712 ACAATCTAACAACTTGCGCAG 57.457 42.857 11.31 7.81 0.00 5.18
2057 2292 1.343465 ACAACTTGCGCAGTAGGTACT 59.657 47.619 11.31 0.00 46.37 2.73
2064 2299 1.722011 CGCAGTAGGTACTTGGTTGG 58.278 55.000 0.00 0.00 41.75 3.77
2065 2300 1.450025 GCAGTAGGTACTTGGTTGGC 58.550 55.000 0.00 0.00 41.75 4.52
2066 2301 1.722011 CAGTAGGTACTTGGTTGGCG 58.278 55.000 0.00 0.00 41.75 5.69
2067 2302 1.001633 CAGTAGGTACTTGGTTGGCGT 59.998 52.381 0.00 0.00 41.75 5.68
2068 2303 1.695788 AGTAGGTACTTGGTTGGCGTT 59.304 47.619 0.00 0.00 41.75 4.84
2069 2304 2.105306 AGTAGGTACTTGGTTGGCGTTT 59.895 45.455 0.00 0.00 41.75 3.60
2070 2305 1.601166 AGGTACTTGGTTGGCGTTTC 58.399 50.000 0.00 0.00 27.25 2.78
2071 2306 1.142262 AGGTACTTGGTTGGCGTTTCT 59.858 47.619 0.00 0.00 27.25 2.52
2072 2307 1.951602 GGTACTTGGTTGGCGTTTCTT 59.048 47.619 0.00 0.00 0.00 2.52
2073 2308 2.359848 GGTACTTGGTTGGCGTTTCTTT 59.640 45.455 0.00 0.00 0.00 2.52
2074 2309 2.863401 ACTTGGTTGGCGTTTCTTTC 57.137 45.000 0.00 0.00 0.00 2.62
2075 2310 2.096248 ACTTGGTTGGCGTTTCTTTCA 58.904 42.857 0.00 0.00 0.00 2.69
2133 2368 1.472026 GCCAGTTATTCGCCGTCCTTA 60.472 52.381 0.00 0.00 0.00 2.69
2169 2405 1.550659 CGTGTTGCACTTTGCCATGC 61.551 55.000 0.00 0.00 44.23 4.06
2173 2409 0.397187 TTGCACTTTGCCATGCCATT 59.603 45.000 0.00 0.00 44.23 3.16
2220 2457 0.591994 TGCATCGCATTTGCATACGC 60.592 50.000 3.13 0.00 44.73 4.42
2325 2564 1.594293 CTTTCGTGTGCGGGTGTCT 60.594 57.895 0.00 0.00 38.89 3.41
2517 2763 1.115467 CCTCTAAGTCTCCGCCATGT 58.885 55.000 0.00 0.00 0.00 3.21
2522 2768 1.270907 AAGTCTCCGCCATGTTCTCT 58.729 50.000 0.00 0.00 0.00 3.10
2586 2835 1.216930 GGACTCTCCTAGCTCCCTCTT 59.783 57.143 0.00 0.00 32.53 2.85
2661 2927 4.629523 TTTTTCCCTCCGCGCCGT 62.630 61.111 0.00 0.00 0.00 5.68
2676 2943 1.214589 CCGTCGGACGTTTCATCCT 59.785 57.895 26.72 0.00 40.58 3.24
3238 3516 2.359975 CGCAGGTTGACTTCCCCC 60.360 66.667 0.00 0.00 0.00 5.40
3239 3517 2.895424 CGCAGGTTGACTTCCCCCT 61.895 63.158 0.00 0.00 0.00 4.79
3240 3518 1.002011 GCAGGTTGACTTCCCCCTC 60.002 63.158 0.00 0.00 0.00 4.30
3244 3522 1.563577 GGTTGACTTCCCCCTCCCTC 61.564 65.000 0.00 0.00 0.00 4.30
3309 3589 7.613022 ACTGTTCATCATTTCATAACTCCATGT 59.387 33.333 0.00 0.00 0.00 3.21
3310 3590 7.764331 TGTTCATCATTTCATAACTCCATGTG 58.236 34.615 0.00 0.00 0.00 3.21
3327 3607 0.928451 GTGTGTTGCTTCGTTTCGCC 60.928 55.000 0.00 0.00 0.00 5.54
3340 3620 4.619973 TCGTTTCGCCCGTGTAATATATT 58.380 39.130 2.97 2.97 0.00 1.28
3356 3636 8.974408 TGTAATATATTGAAATGTTCGTCTCGG 58.026 33.333 8.28 0.00 0.00 4.63
3454 3737 3.308323 GCTAGTTGCTGTTATCTGCTGTC 59.692 47.826 4.57 0.00 38.91 3.51
3455 3738 3.692257 AGTTGCTGTTATCTGCTGTCT 57.308 42.857 4.57 0.00 38.91 3.41
3456 3739 3.332919 AGTTGCTGTTATCTGCTGTCTG 58.667 45.455 4.57 0.00 38.91 3.51
3556 3839 5.611128 TGTTGTATGCCATGCCATATTTT 57.389 34.783 0.00 0.00 31.01 1.82
3660 3947 4.720649 TCAGGGACTTAGTGATTTCTCG 57.279 45.455 0.00 0.00 34.60 4.04
3661 3948 4.087182 TCAGGGACTTAGTGATTTCTCGT 58.913 43.478 0.00 0.00 34.60 4.18
3662 3949 4.082190 TCAGGGACTTAGTGATTTCTCGTG 60.082 45.833 0.00 0.00 34.60 4.35
3698 3989 6.751888 GTCTTTGTCTGCTGTTATTTTGTTGT 59.248 34.615 0.00 0.00 0.00 3.32
3829 4120 9.499479 CAATTATAGAGTGCCATAGAATGACTT 57.501 33.333 0.00 0.00 0.00 3.01
3902 4193 5.352016 TGATATTCATTTTTGCCAAGCTTGC 59.648 36.000 21.43 16.17 0.00 4.01
4230 4530 6.072838 CCATGATATGTTCCTGTAGCATGTTC 60.073 42.308 0.00 0.00 40.98 3.18
4260 4560 6.048732 TGCTCTGAACATTGTAACCTGATA 57.951 37.500 0.00 0.00 0.00 2.15
4308 4611 5.364446 TCCACTAAGTCTGTGAACCTGTTAA 59.636 40.000 0.00 0.00 37.60 2.01
4338 4642 2.517959 TCTTGCCATGTCCTTTTGAGG 58.482 47.619 0.00 0.00 0.00 3.86
4404 4708 6.468543 TGTTGTGCTTTACCTGTACATCATA 58.531 36.000 0.00 0.00 30.79 2.15
4474 4778 1.661341 CTTGCTAGCTGCCTAGTTGG 58.339 55.000 17.23 0.00 42.51 3.77
4504 4808 4.937620 GGACAGATTGTTGCTATGTCTTGA 59.062 41.667 3.91 0.00 40.07 3.02
4553 4857 4.119862 TCCGTTTTGAGCATGCTCTATAC 58.880 43.478 39.46 33.65 43.12 1.47
4700 5005 2.496111 AGACCGTAGCTCCGAATCTAG 58.504 52.381 0.00 0.00 0.00 2.43
4776 5081 9.353999 CTCTTTAACTTGCTGTTTAACAACTTT 57.646 29.630 0.00 0.00 39.89 2.66
4854 5159 8.734218 TTACCGGATTTGTTATATGTTGCTTA 57.266 30.769 9.46 0.00 0.00 3.09
5026 5331 2.352651 CTCGATAGTTCCCGTGTCGTTA 59.647 50.000 0.00 0.00 34.24 3.18
5139 5447 7.816995 GTCACCTTGGATCTCATTACTATCATC 59.183 40.741 0.00 0.00 0.00 2.92
5172 5480 1.721926 GCTTCGTTCTATCGCTATGCC 59.278 52.381 0.00 0.00 0.00 4.40
5229 5538 5.450818 AATTGCCATGAACCTCTAACCTA 57.549 39.130 0.00 0.00 0.00 3.08
5293 5603 2.478872 TGCTCAGCCCCTCTTATAGT 57.521 50.000 0.00 0.00 0.00 2.12
5486 5798 1.668751 CGGTGTTATGTTCCCGGATTG 59.331 52.381 0.73 0.00 36.84 2.67
5950 6266 5.297527 TCGTTGACCGTGAGAGCTTATAATA 59.702 40.000 0.00 0.00 37.94 0.98
6055 6371 3.005472 TCCGGTTGTAGAGAACTTGACAG 59.995 47.826 0.00 0.00 0.00 3.51
6152 6468 2.295070 ACGGTTTCTGGGTTATGTTTGC 59.705 45.455 0.00 0.00 0.00 3.68
6159 6475 3.008157 TCTGGGTTATGTTTGCCGTAAGA 59.992 43.478 0.00 0.00 43.02 2.10
6251 6569 3.830744 TGCGTAAGTTAGCCACCATAT 57.169 42.857 3.04 0.00 41.68 1.78
6440 6762 5.041287 GCTGTTTACTTGTTTTGGAGTTCC 58.959 41.667 0.00 0.00 0.00 3.62
6750 7073 0.106167 CCTCCTCCGTGACCATCCTA 60.106 60.000 0.00 0.00 0.00 2.94
6759 7082 5.996644 TCCGTGACCATCCTATATGTTTTT 58.003 37.500 0.00 0.00 0.00 1.94
6768 7091 6.925165 CCATCCTATATGTTTTTGTTGGCATC 59.075 38.462 0.00 0.00 0.00 3.91
6780 7103 4.987408 TGTTGGCATCCAATCTGTATTG 57.013 40.909 1.25 0.00 45.80 1.90
6787 7110 4.498682 GCATCCAATCTGTATTGCTGGAAC 60.499 45.833 0.00 0.00 41.06 3.62
6788 7111 3.620488 TCCAATCTGTATTGCTGGAACC 58.380 45.455 0.00 0.00 41.06 3.62
6809 7133 7.043656 GGAACCGTTCTTACATTTTGACTTTTG 60.044 37.037 11.03 0.00 0.00 2.44
6813 7137 7.329582 CGTTCTTACATTTTGACTTTTGCTTG 58.670 34.615 0.00 0.00 0.00 4.01
6816 7140 3.205338 ACATTTTGACTTTTGCTTGCCC 58.795 40.909 0.00 0.00 0.00 5.36
6824 7148 1.653094 TTTTGCTTGCCCCGCGATAG 61.653 55.000 8.23 0.00 0.00 2.08
6847 7171 4.510340 GTCATTTGACCTCGTTGTACAACT 59.490 41.667 30.47 16.02 39.07 3.16
6850 7174 4.924305 TTGACCTCGTTGTACAACTAGT 57.076 40.909 30.47 24.38 39.08 2.57
6852 7176 6.389830 TTGACCTCGTTGTACAACTAGTTA 57.610 37.500 30.47 19.82 39.08 2.24
6865 7189 8.770828 TGTACAACTAGTTATCTTTTCACTTGC 58.229 33.333 8.04 0.00 0.00 4.01
6879 7203 5.428496 TTCACTTGCTTTGATCTTGTCAG 57.572 39.130 0.00 0.00 38.29 3.51
6898 7222 0.730265 GCGTTAATTGTCGCCATCCA 59.270 50.000 14.95 0.00 45.54 3.41
6911 7235 5.247337 TGTCGCCATCCATATTATTGGTCTA 59.753 40.000 0.00 0.00 38.01 2.59
6944 7268 2.224597 ACAGTGATGCCATGTGAAGACA 60.225 45.455 0.00 0.00 36.22 3.41
6956 7280 1.140312 TGAAGACAAGGAAGGCCTGT 58.860 50.000 5.69 0.00 46.28 4.00
6963 7287 1.815003 CAAGGAAGGCCTGTGATCAAC 59.185 52.381 5.69 0.00 46.28 3.18
6970 7294 1.338200 GGCCTGTGATCAACGAAGAGT 60.338 52.381 0.00 0.00 0.00 3.24
6973 7297 3.249091 CCTGTGATCAACGAAGAGTGAG 58.751 50.000 0.00 0.00 0.00 3.51
7004 7328 0.107831 TGGTGCAGTAGCGAAAACCT 59.892 50.000 0.00 0.00 46.23 3.50
7020 7344 5.106634 CGAAAACCTCTCGTCTTAGAGAAGA 60.107 44.000 2.47 0.00 45.52 2.87
7053 7383 5.023533 TCTGTTAGCTGTGTTTTGAGTCT 57.976 39.130 0.00 0.00 0.00 3.24
7067 7397 9.042008 GTGTTTTGAGTCTGAGACAAGTTATTA 57.958 33.333 15.86 0.00 34.60 0.98
7071 7401 8.410673 TTGAGTCTGAGACAAGTTATTACTCT 57.589 34.615 15.86 0.00 34.60 3.24
7088 7418 6.823286 TTACTCTGTAATGGATTGGGATGA 57.177 37.500 0.00 0.00 0.00 2.92
7098 7428 7.934354 AATGGATTGGGATGATGGATAAAAA 57.066 32.000 0.00 0.00 0.00 1.94
7103 7433 6.729690 TTGGGATGATGGATAAAAATGGAC 57.270 37.500 0.00 0.00 0.00 4.02
7118 7448 1.335132 TGGACCGGGTGCTCCTATTC 61.335 60.000 19.81 0.00 0.00 1.75
7128 7458 4.706962 GGGTGCTCCTATTCTTGTTTTGAT 59.293 41.667 4.53 0.00 0.00 2.57
7129 7459 5.393461 GGGTGCTCCTATTCTTGTTTTGATG 60.393 44.000 4.53 0.00 0.00 3.07
7145 7475 6.862608 TGTTTTGATGAGACATGTATGTTTGC 59.137 34.615 0.00 0.00 41.95 3.68
7148 7478 6.426980 TGATGAGACATGTATGTTTGCTTC 57.573 37.500 0.00 0.00 41.95 3.86
7158 7490 6.606234 TGTATGTTTGCTTCGAACAAGTTA 57.394 33.333 11.25 5.29 40.54 2.24
7207 7544 1.098869 TTGCAAAACCTGTGCTCGAA 58.901 45.000 0.00 0.00 42.69 3.71
7208 7545 0.380378 TGCAAAACCTGTGCTCGAAC 59.620 50.000 0.00 0.00 42.69 3.95
7209 7546 0.380378 GCAAAACCTGTGCTCGAACA 59.620 50.000 0.00 0.00 39.00 3.18
7210 7547 1.202245 GCAAAACCTGTGCTCGAACAA 60.202 47.619 0.00 0.00 39.00 2.83
7213 7551 4.111916 CAAAACCTGTGCTCGAACAATTT 58.888 39.130 0.00 0.00 0.00 1.82
7218 7556 3.311106 CTGTGCTCGAACAATTTGCAAT 58.689 40.909 0.00 0.00 35.34 3.56
7225 7563 3.254411 TCGAACAATTTGCAATGTGCCTA 59.746 39.130 6.46 0.00 44.23 3.93
7236 7574 3.753272 GCAATGTGCCTATGGTATCGATT 59.247 43.478 1.71 0.00 37.42 3.34
7240 7578 2.157668 GTGCCTATGGTATCGATTTGCG 59.842 50.000 1.71 0.00 42.69 4.85
7248 7587 4.888917 TGGTATCGATTTGCGGATCATAA 58.111 39.130 1.71 0.00 41.33 1.90
7345 7710 4.683832 CCCGTGGAGTAACAAGAAGATAG 58.316 47.826 0.00 0.00 0.00 2.08
7346 7711 4.401519 CCCGTGGAGTAACAAGAAGATAGA 59.598 45.833 0.00 0.00 0.00 1.98
7386 7789 5.466058 GCACAACATCAAAATTGAATGACCA 59.534 36.000 0.00 0.00 41.13 4.02
7395 7798 7.380536 TCAAAATTGAATGACCATCAAGAAGG 58.619 34.615 0.00 0.00 39.92 3.46
7398 7801 8.599624 AAATTGAATGACCATCAAGAAGGTAT 57.400 30.769 0.00 0.00 39.92 2.73
7427 7830 6.694877 GATTACTTGGTTGTAATCCCTTCC 57.305 41.667 13.39 0.00 46.27 3.46
7429 7832 2.719705 ACTTGGTTGTAATCCCTTCCCA 59.280 45.455 0.00 0.00 0.00 4.37
7465 7868 5.399991 TGGTATCTATATATAAGGCCCCCG 58.600 45.833 0.00 0.00 0.00 5.73
7479 7882 1.937223 GCCCCCGTTGTTTTTCAAAAG 59.063 47.619 0.00 0.00 37.81 2.27
7480 7883 2.556257 CCCCCGTTGTTTTTCAAAAGG 58.444 47.619 0.00 0.00 37.81 3.11
7486 7889 5.863898 CCGTTGTTTTTCAAAAGGGAAAAG 58.136 37.500 0.00 0.00 44.77 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.275856 CTGAAGTGGAGAGCTGAGCTT 59.724 52.381 9.00 0.00 39.88 3.74
22 23 0.607620 ACTGAAGTGGAGAGCTGAGC 59.392 55.000 0.00 0.00 0.00 4.26
38 39 0.811915 ACGTTGGAGATCGGAGACTG 59.188 55.000 0.00 0.00 42.51 3.51
40 41 1.268640 GCTACGTTGGAGATCGGAGAC 60.269 57.143 0.00 0.00 42.51 3.36
42 43 0.317103 CGCTACGTTGGAGATCGGAG 60.317 60.000 0.00 0.00 40.50 4.63
46 47 2.856089 CGTCGCTACGTTGGAGATC 58.144 57.895 2.05 0.00 44.21 2.75
56 57 3.795659 CTTTCTTTTTGACCGTCGCTAC 58.204 45.455 0.00 0.00 0.00 3.58
59 60 1.268335 TGCTTTCTTTTTGACCGTCGC 60.268 47.619 0.00 0.00 0.00 5.19
61 62 4.287238 TCTTGCTTTCTTTTTGACCGTC 57.713 40.909 0.00 0.00 0.00 4.79
62 63 4.421058 GTTCTTGCTTTCTTTTTGACCGT 58.579 39.130 0.00 0.00 0.00 4.83
68 69 2.860136 GCAGCGTTCTTGCTTTCTTTTT 59.140 40.909 0.00 0.00 44.46 1.94
69 70 2.463876 GCAGCGTTCTTGCTTTCTTTT 58.536 42.857 0.00 0.00 44.46 2.27
71 72 0.312102 GGCAGCGTTCTTGCTTTCTT 59.688 50.000 0.00 0.00 44.46 2.52
108 109 2.764128 GGGGATGGCGAGGTCTGA 60.764 66.667 0.00 0.00 0.00 3.27
117 118 3.455469 GTTGCTGCAGGGGATGGC 61.455 66.667 17.12 0.00 0.00 4.40
120 121 0.252375 ATTTGGTTGCTGCAGGGGAT 60.252 50.000 17.12 0.00 0.00 3.85
126 127 3.577848 ACCTCAAATATTTGGTTGCTGCA 59.422 39.130 24.40 0.00 38.66 4.41
165 169 4.378961 AGGGAATGGAGAAGAAGAGGAAT 58.621 43.478 0.00 0.00 0.00 3.01
208 222 4.588951 GGGTTCTCCACAAGGAAAGAAAAT 59.411 41.667 0.00 0.00 45.19 1.82
209 223 3.958147 GGGTTCTCCACAAGGAAAGAAAA 59.042 43.478 0.00 0.00 45.19 2.29
222 236 3.054361 GGAAATCAAGCTAGGGTTCTCCA 60.054 47.826 0.00 0.00 38.24 3.86
226 240 2.242452 AGGGGAAATCAAGCTAGGGTTC 59.758 50.000 0.00 0.00 0.00 3.62
253 268 5.013391 TGTCGAAGTAAGGGGAAATTAGGTT 59.987 40.000 0.00 0.00 0.00 3.50
254 269 4.533311 TGTCGAAGTAAGGGGAAATTAGGT 59.467 41.667 0.00 0.00 0.00 3.08
260 275 2.038033 CCACTGTCGAAGTAAGGGGAAA 59.962 50.000 1.63 0.00 36.88 3.13
263 278 1.204941 CTCCACTGTCGAAGTAAGGGG 59.795 57.143 0.00 0.00 36.83 4.79
272 287 2.037367 CCCTCCCTCCACTGTCGA 59.963 66.667 0.00 0.00 0.00 4.20
274 289 1.990614 GTCCCCTCCCTCCACTGTC 60.991 68.421 0.00 0.00 0.00 3.51
292 307 2.109799 CCCTATCGCAGCACCCTG 59.890 66.667 0.00 0.00 42.13 4.45
293 308 2.365635 ACCCTATCGCAGCACCCT 60.366 61.111 0.00 0.00 0.00 4.34
302 325 4.011023 CACCTATCTACCTCACCCTATCG 58.989 52.174 0.00 0.00 0.00 2.92
310 346 4.107961 TGGATCCATCACCTATCTACCTCA 59.892 45.833 11.44 0.00 0.00 3.86
349 385 5.154222 GGAAAAAGAAACTGGATGTTAGCG 58.846 41.667 0.00 0.00 38.03 4.26
351 387 9.626045 GTTATGGAAAAAGAAACTGGATGTTAG 57.374 33.333 0.00 0.00 38.03 2.34
367 403 7.973388 GCATAGCATACACAAAGTTATGGAAAA 59.027 33.333 0.00 0.00 30.26 2.29
388 451 2.160205 CCATCCATTCAGCCAGCATAG 58.840 52.381 0.00 0.00 0.00 2.23
426 492 4.424626 TGCAAAAGTATCGCACACAAAAA 58.575 34.783 0.00 0.00 0.00 1.94
428 494 3.699779 TGCAAAAGTATCGCACACAAA 57.300 38.095 0.00 0.00 0.00 2.83
431 497 2.287308 TGGTTGCAAAAGTATCGCACAC 60.287 45.455 0.00 0.00 34.87 3.82
433 499 2.287308 TGTGGTTGCAAAAGTATCGCAC 60.287 45.455 0.00 0.00 34.87 5.34
435 501 2.031157 AGTGTGGTTGCAAAAGTATCGC 60.031 45.455 0.00 0.00 0.00 4.58
436 502 3.249799 TCAGTGTGGTTGCAAAAGTATCG 59.750 43.478 0.00 0.00 0.00 2.92
438 504 5.301551 TCAATCAGTGTGGTTGCAAAAGTAT 59.698 36.000 0.00 0.00 38.32 2.12
439 505 4.642437 TCAATCAGTGTGGTTGCAAAAGTA 59.358 37.500 0.00 0.00 38.32 2.24
440 506 3.446873 TCAATCAGTGTGGTTGCAAAAGT 59.553 39.130 0.00 0.00 38.32 2.66
441 507 4.044336 TCAATCAGTGTGGTTGCAAAAG 57.956 40.909 0.00 0.00 38.32 2.27
442 508 4.159321 TCTTCAATCAGTGTGGTTGCAAAA 59.841 37.500 0.00 0.00 38.32 2.44
466 538 9.860898 GAAATGCATGAAACTAAAGGAATAGTT 57.139 29.630 0.00 0.00 45.62 2.24
467 539 8.470002 GGAAATGCATGAAACTAAAGGAATAGT 58.530 33.333 0.00 0.00 37.73 2.12
469 541 8.359875 TGGAAATGCATGAAACTAAAGGAATA 57.640 30.769 0.00 0.00 0.00 1.75
471 569 6.662865 TGGAAATGCATGAAACTAAAGGAA 57.337 33.333 0.00 0.00 0.00 3.36
474 572 8.712285 ATCAATGGAAATGCATGAAACTAAAG 57.288 30.769 0.00 0.00 0.00 1.85
475 573 9.504708 AAATCAATGGAAATGCATGAAACTAAA 57.495 25.926 0.00 0.00 0.00 1.85
479 577 7.367159 TGAAATCAATGGAAATGCATGAAAC 57.633 32.000 0.00 0.00 0.00 2.78
480 578 8.568676 AATGAAATCAATGGAAATGCATGAAA 57.431 26.923 0.00 0.00 0.00 2.69
485 583 7.747155 AACAAATGAAATCAATGGAAATGCA 57.253 28.000 0.00 0.00 0.00 3.96
486 584 8.077386 ACAAACAAATGAAATCAATGGAAATGC 58.923 29.630 5.07 0.00 0.00 3.56
494 592 5.764192 CCACCCACAAACAAATGAAATCAAT 59.236 36.000 0.00 0.00 0.00 2.57
500 598 2.114616 AGCCACCCACAAACAAATGAA 58.885 42.857 0.00 0.00 0.00 2.57
501 599 1.411977 CAGCCACCCACAAACAAATGA 59.588 47.619 0.00 0.00 0.00 2.57
511 609 0.534873 AAACAACAACAGCCACCCAC 59.465 50.000 0.00 0.00 0.00 4.61
536 634 2.307098 AGAGAGTTGGGAACAGGATTGG 59.693 50.000 0.00 0.00 44.54 3.16
555 653 2.416747 CTCTTTTCATCCACACGCAGA 58.583 47.619 0.00 0.00 0.00 4.26
559 657 1.466167 CAGCCTCTTTTCATCCACACG 59.534 52.381 0.00 0.00 0.00 4.49
569 667 1.544691 CAGATTGCTGCAGCCTCTTTT 59.455 47.619 34.64 13.41 41.18 2.27
581 679 2.629137 TCAAATGGTGTTGCAGATTGCT 59.371 40.909 2.48 0.00 45.31 3.91
594 692 4.813346 GACACGGGGTCAAATGGT 57.187 55.556 5.30 0.00 46.19 3.55
631 729 2.632512 GGAGGATCTCAATGAGGAGGTC 59.367 54.545 10.71 4.24 43.00 3.85
636 734 2.315176 ACGAGGAGGATCTCAATGAGG 58.685 52.381 10.71 0.00 33.59 3.86
655 753 2.516225 GGTGGGGCAGGCGATTAC 60.516 66.667 0.00 0.00 0.00 1.89
690 788 2.097038 CCAGCGCTTGAAGACGAGG 61.097 63.158 7.50 0.00 0.00 4.63
698 796 1.153269 TGACACAACCAGCGCTTGA 60.153 52.632 16.40 0.00 0.00 3.02
748 846 4.496336 GGGCGGATGGAGCTTGCT 62.496 66.667 0.00 0.00 34.52 3.91
797 895 1.876416 GCACAAAGCGTAAGAGGTCCA 60.876 52.381 0.00 0.00 43.02 4.02
831 935 0.324943 CGACATCAAACTCTGGGGGT 59.675 55.000 0.00 0.00 0.00 4.95
855 959 1.226974 GATAGAGCTTGCACGGCGA 60.227 57.895 16.62 0.00 34.52 5.54
859 963 1.929836 GTCCAAGATAGAGCTTGCACG 59.070 52.381 1.94 0.00 42.99 5.34
870 974 7.851228 AGATGAGTTTATGTGTGTCCAAGATA 58.149 34.615 0.00 0.00 0.00 1.98
874 978 5.473162 CCAAGATGAGTTTATGTGTGTCCAA 59.527 40.000 0.00 0.00 0.00 3.53
879 983 6.183360 GGTCATCCAAGATGAGTTTATGTGTG 60.183 42.308 7.51 0.00 0.00 3.82
880 984 5.882557 GGTCATCCAAGATGAGTTTATGTGT 59.117 40.000 7.51 0.00 0.00 3.72
904 1020 3.016031 TGGTGGAAATGATGTCATTCCG 58.984 45.455 8.56 0.00 45.06 4.30
918 1034 4.157656 CAGTTCTTGAACTTGTTGGTGGAA 59.842 41.667 12.73 0.00 0.00 3.53
920 1036 3.443681 ACAGTTCTTGAACTTGTTGGTGG 59.556 43.478 12.73 3.20 0.00 4.61
929 1045 4.386867 TCTTCGTCACAGTTCTTGAACT 57.613 40.909 9.93 9.93 0.00 3.01
942 1058 7.931578 ATGTATTTATTTGGGTTCTTCGTCA 57.068 32.000 0.00 0.00 0.00 4.35
956 1072 7.450323 GTGGGTTGGGCACTATATGTATTTATT 59.550 37.037 0.00 0.00 0.00 1.40
959 1075 5.103686 AGTGGGTTGGGCACTATATGTATTT 60.104 40.000 0.00 0.00 0.00 1.40
974 1090 2.034687 CAGGGCAGAGTGGGTTGG 59.965 66.667 0.00 0.00 0.00 3.77
998 1114 4.218722 GTGGGACGCTAACCATGG 57.781 61.111 11.19 11.19 39.30 3.66
1007 1123 1.166531 GCATGGGAATAGTGGGACGC 61.167 60.000 0.00 0.00 40.45 5.19
1016 1132 1.092921 GCGTTCGTGGCATGGGAATA 61.093 55.000 6.90 0.00 0.00 1.75
1041 1157 2.369394 CTGGAAGTGTGGAAATAGCCC 58.631 52.381 0.00 0.00 0.00 5.19
1058 1174 5.478679 TCTTCTTTGAAGAGGAGTCTACTGG 59.521 44.000 5.97 0.00 36.39 4.00
1064 1180 4.000325 GCCTTCTTCTTTGAAGAGGAGTC 59.000 47.826 17.25 6.04 44.40 3.36
1071 1187 1.461127 CCGTCGCCTTCTTCTTTGAAG 59.539 52.381 1.23 1.23 42.10 3.02
1095 1211 8.651589 ATTCCATATCAAGATAGACGTAGGAA 57.348 34.615 0.00 0.00 35.08 3.36
1102 1218 8.756927 TCCATCTGATTCCATATCAAGATAGAC 58.243 37.037 0.00 0.00 0.00 2.59
1108 1224 7.812690 TTGTTCCATCTGATTCCATATCAAG 57.187 36.000 0.00 0.00 0.00 3.02
1110 1226 8.771521 ATTTTGTTCCATCTGATTCCATATCA 57.228 30.769 0.00 0.00 0.00 2.15
1111 1227 9.075678 AGATTTTGTTCCATCTGATTCCATATC 57.924 33.333 0.00 0.00 0.00 1.63
1113 1229 9.565090 CTAGATTTTGTTCCATCTGATTCCATA 57.435 33.333 0.00 0.00 31.89 2.74
1122 1238 5.645497 GTGCACTCTAGATTTTGTTCCATCT 59.355 40.000 10.32 0.00 34.08 2.90
1139 1261 7.910162 CACCTTGTAACATATAAATGTGCACTC 59.090 37.037 19.41 0.00 45.79 3.51
1140 1262 7.148086 CCACCTTGTAACATATAAATGTGCACT 60.148 37.037 19.41 0.00 45.79 4.40
1149 1271 6.013206 ACCAGACACCACCTTGTAACATATAA 60.013 38.462 0.00 0.00 0.00 0.98
1158 1280 1.152963 GCACCAGACACCACCTTGT 60.153 57.895 0.00 0.00 0.00 3.16
1163 1285 0.884704 ATGAACGCACCAGACACCAC 60.885 55.000 0.00 0.00 0.00 4.16
1194 1316 0.536006 GCTGACAAGGGAGCTGTGTT 60.536 55.000 0.00 0.00 32.12 3.32
1211 1333 7.483580 AGTAGAGTATTCAGTTTTAGTGGCT 57.516 36.000 0.00 0.00 0.00 4.75
1217 1339 8.364894 TGTCAGCAAGTAGAGTATTCAGTTTTA 58.635 33.333 0.00 0.00 0.00 1.52
1218 1340 7.217200 TGTCAGCAAGTAGAGTATTCAGTTTT 58.783 34.615 0.00 0.00 0.00 2.43
1233 1355 9.851686 TCCATATAGATTTTATTGTCAGCAAGT 57.148 29.630 0.00 0.00 38.10 3.16
1238 1360 9.288576 TGGCTTCCATATAGATTTTATTGTCAG 57.711 33.333 0.00 0.00 0.00 3.51
1259 1381 2.108952 AGAATTTCACTCAGGGTGGCTT 59.891 45.455 0.00 0.00 45.38 4.35
1260 1382 1.707427 AGAATTTCACTCAGGGTGGCT 59.293 47.619 0.00 0.00 45.38 4.75
1268 1390 6.713762 AATCCAACACAAGAATTTCACTCA 57.286 33.333 0.00 0.00 0.00 3.41
1295 1417 6.539173 TGAAATGTGGAGAAACTTAAGGCTA 58.461 36.000 7.53 0.00 0.00 3.93
1326 1448 2.164422 GTCACCAATAAGAAGCCCTTGC 59.836 50.000 0.00 0.00 36.34 4.01
1336 1458 3.696045 TGGTTCCATGGTCACCAATAAG 58.304 45.455 26.96 0.00 37.66 1.73
1348 1470 1.199789 CCGTGACAACATGGTTCCATG 59.800 52.381 24.78 24.78 45.30 3.66
1350 1472 3.014037 CCGTGACAACATGGTTCCA 57.986 52.632 0.00 0.00 45.30 3.53
1381 1503 4.487714 AATGAATGAGATACACACCGGT 57.512 40.909 0.00 0.00 0.00 5.28
1383 1505 4.875536 TCCAAATGAATGAGATACACACCG 59.124 41.667 0.00 0.00 0.00 4.94
1407 1529 0.107945 AGATGCAAAGCCGAGACTCC 60.108 55.000 0.00 0.00 0.00 3.85
1412 1534 1.712977 GAGCCAGATGCAAAGCCGAG 61.713 60.000 0.00 0.00 44.83 4.63
1415 1537 2.768492 CGGAGCCAGATGCAAAGCC 61.768 63.158 0.00 0.00 44.83 4.35
1431 1553 1.153168 CCAGTTATCCCCTGTGCGG 60.153 63.158 0.00 0.00 0.00 5.69
1443 1566 2.640332 TGTATCCACCAGCAACCAGTTA 59.360 45.455 0.00 0.00 0.00 2.24
1464 1587 4.927425 GCACACATCTCATGAAAGCAAATT 59.073 37.500 0.00 0.00 0.00 1.82
1473 1596 3.692593 CCAATTGAGCACACATCTCATGA 59.307 43.478 7.12 0.00 39.96 3.07
1475 1598 3.021695 CCCAATTGAGCACACATCTCAT 58.978 45.455 7.12 0.00 39.96 2.90
1489 1612 6.947644 TGTGATATCAGACATTCCCAATTG 57.052 37.500 5.42 0.00 0.00 2.32
1495 1618 6.040166 AGCCAATTTGTGATATCAGACATTCC 59.960 38.462 5.42 3.74 0.00 3.01
1497 1620 6.379133 ACAGCCAATTTGTGATATCAGACATT 59.621 34.615 5.42 7.04 0.00 2.71
1501 1624 6.839124 AAACAGCCAATTTGTGATATCAGA 57.161 33.333 5.42 1.05 0.00 3.27
1507 1630 9.590451 CTGATTTATAAACAGCCAATTTGTGAT 57.410 29.630 0.00 0.00 0.00 3.06
1519 1642 3.315191 CCGCCCACCTGATTTATAAACAG 59.685 47.826 15.31 15.31 0.00 3.16
1523 1646 1.213182 TGCCGCCCACCTGATTTATAA 59.787 47.619 0.00 0.00 0.00 0.98
1524 1647 0.840617 TGCCGCCCACCTGATTTATA 59.159 50.000 0.00 0.00 0.00 0.98
1564 1687 2.437281 AGACTAGGCAATGACCCATCTG 59.563 50.000 0.00 0.00 0.00 2.90
1574 1697 5.155161 TGATACCCACATAGACTAGGCAAT 58.845 41.667 0.00 0.00 0.00 3.56
1575 1698 4.552674 TGATACCCACATAGACTAGGCAA 58.447 43.478 0.00 0.00 0.00 4.52
1614 1737 5.830912 TGATCCTTGCTTGTTAACACTTTG 58.169 37.500 8.07 0.52 0.00 2.77
1622 1745 3.763360 CCACCATTGATCCTTGCTTGTTA 59.237 43.478 0.00 0.00 0.00 2.41
1623 1746 2.564062 CCACCATTGATCCTTGCTTGTT 59.436 45.455 0.00 0.00 0.00 2.83
1630 1759 0.255890 CGACCCCACCATTGATCCTT 59.744 55.000 0.00 0.00 0.00 3.36
1643 1772 1.129058 ACAAGGATGGATACGACCCC 58.871 55.000 0.00 0.00 42.51 4.95
1699 1828 4.664688 AGACAAACCTTGGAGGATCATT 57.335 40.909 0.07 0.00 37.67 2.57
1708 1837 1.762370 AGGGCAAAAGACAAACCTTGG 59.238 47.619 0.00 0.00 34.12 3.61
1741 1870 6.627395 TGTCACACAAAAACAAGGTATAGG 57.373 37.500 0.00 0.00 0.00 2.57
1748 1877 8.479280 GCTATAATGTTGTCACACAAAAACAAG 58.521 33.333 0.00 0.00 40.15 3.16
1762 1891 7.105588 TGTCTCATCAACTGCTATAATGTTGT 58.894 34.615 0.00 0.00 41.05 3.32
1763 1892 7.543947 TGTCTCATCAACTGCTATAATGTTG 57.456 36.000 0.00 0.00 41.46 3.33
1764 1893 8.743085 AATGTCTCATCAACTGCTATAATGTT 57.257 30.769 0.00 0.00 0.00 2.71
1765 1894 8.743085 AAATGTCTCATCAACTGCTATAATGT 57.257 30.769 0.00 0.00 0.00 2.71
1771 1900 9.755804 CTCTTATAAATGTCTCATCAACTGCTA 57.244 33.333 0.00 0.00 0.00 3.49
1773 1902 8.654230 TCTCTTATAAATGTCTCATCAACTGC 57.346 34.615 0.00 0.00 0.00 4.40
1795 1924 7.068716 AGCAAACCACCATTCCTATAATTTCTC 59.931 37.037 0.00 0.00 0.00 2.87
1800 2010 6.322201 CAGAAGCAAACCACCATTCCTATAAT 59.678 38.462 0.00 0.00 0.00 1.28
1804 2014 3.420893 CAGAAGCAAACCACCATTCCTA 58.579 45.455 0.00 0.00 0.00 2.94
1896 2109 5.969423 AGCATGCTAAGCAAAACACATAAT 58.031 33.333 21.21 0.00 43.62 1.28
1900 2113 4.701651 AGATAGCATGCTAAGCAAAACACA 59.298 37.500 30.06 6.17 43.62 3.72
1902 2115 5.188434 AGAGATAGCATGCTAAGCAAAACA 58.812 37.500 30.06 7.53 43.62 2.83
1904 2117 4.509230 CGAGAGATAGCATGCTAAGCAAAA 59.491 41.667 30.06 9.13 43.62 2.44
1908 2121 1.991965 GCGAGAGATAGCATGCTAAGC 59.008 52.381 30.06 23.37 31.73 3.09
1909 2122 2.985809 GTGCGAGAGATAGCATGCTAAG 59.014 50.000 30.06 17.24 45.69 2.18
1910 2123 2.605580 CGTGCGAGAGATAGCATGCTAA 60.606 50.000 30.06 14.53 45.69 3.09
1911 2124 1.068954 CGTGCGAGAGATAGCATGCTA 60.069 52.381 28.72 28.72 45.69 3.49
1912 2125 0.318529 CGTGCGAGAGATAGCATGCT 60.319 55.000 25.99 25.99 45.69 3.79
1914 2127 0.312102 TCCGTGCGAGAGATAGCATG 59.688 55.000 2.96 2.96 45.69 4.06
1916 2129 0.312102 CATCCGTGCGAGAGATAGCA 59.688 55.000 0.00 0.00 41.55 3.49
1928 2141 1.331756 GCTTCATAGTTGGCATCCGTG 59.668 52.381 0.00 0.00 0.00 4.94
1929 2142 1.668419 GCTTCATAGTTGGCATCCGT 58.332 50.000 0.00 0.00 0.00 4.69
1930 2143 0.583438 CGCTTCATAGTTGGCATCCG 59.417 55.000 0.00 0.00 0.00 4.18
1931 2144 1.668419 ACGCTTCATAGTTGGCATCC 58.332 50.000 0.00 0.00 0.00 3.51
1932 2145 4.875544 TTTACGCTTCATAGTTGGCATC 57.124 40.909 0.00 0.00 0.00 3.91
1933 2146 5.835113 AATTTACGCTTCATAGTTGGCAT 57.165 34.783 0.00 0.00 0.00 4.40
1934 2147 5.637006 AAATTTACGCTTCATAGTTGGCA 57.363 34.783 0.00 0.00 0.00 4.92
1935 2148 7.007995 GTGTAAAATTTACGCTTCATAGTTGGC 59.992 37.037 18.87 0.00 0.00 4.52
1936 2149 8.234546 AGTGTAAAATTTACGCTTCATAGTTGG 58.765 33.333 21.99 0.00 34.98 3.77
1940 2153 6.687105 GCCAGTGTAAAATTTACGCTTCATAG 59.313 38.462 24.28 14.88 36.27 2.23
1941 2154 6.149640 TGCCAGTGTAAAATTTACGCTTCATA 59.850 34.615 24.28 11.76 36.27 2.15
1943 2156 4.276183 TGCCAGTGTAAAATTTACGCTTCA 59.724 37.500 24.28 21.10 36.27 3.02
1944 2157 4.789784 TGCCAGTGTAAAATTTACGCTTC 58.210 39.130 24.28 19.33 36.27 3.86
1945 2158 4.839668 TGCCAGTGTAAAATTTACGCTT 57.160 36.364 24.28 10.96 36.27 4.68
1946 2159 5.183140 AGAATGCCAGTGTAAAATTTACGCT 59.817 36.000 21.99 21.99 38.66 5.07
1947 2160 5.399013 AGAATGCCAGTGTAAAATTTACGC 58.601 37.500 18.59 18.59 0.00 4.42
1948 2161 6.861055 ACAAGAATGCCAGTGTAAAATTTACG 59.139 34.615 10.81 0.00 0.00 3.18
1949 2162 7.651704 ACACAAGAATGCCAGTGTAAAATTTAC 59.348 33.333 8.82 8.82 42.84 2.01
1950 2163 7.721402 ACACAAGAATGCCAGTGTAAAATTTA 58.279 30.769 0.00 0.00 42.84 1.40
1951 2164 6.581712 ACACAAGAATGCCAGTGTAAAATTT 58.418 32.000 0.00 0.00 42.84 1.82
1952 2165 6.160576 ACACAAGAATGCCAGTGTAAAATT 57.839 33.333 0.00 0.00 42.84 1.82
1953 2166 5.789643 ACACAAGAATGCCAGTGTAAAAT 57.210 34.783 0.00 0.00 42.84 1.82
1968 2181 6.466812 TCAGAAGAGATGCATAAACACAAGA 58.533 36.000 0.00 0.00 0.00 3.02
1991 2204 3.620374 ACTTCGTGTGATGCATCTGAATC 59.380 43.478 26.32 12.29 0.00 2.52
1992 2205 3.603532 ACTTCGTGTGATGCATCTGAAT 58.396 40.909 26.32 11.97 0.00 2.57
1994 2207 2.749280 ACTTCGTGTGATGCATCTGA 57.251 45.000 26.32 15.79 0.00 3.27
1995 2208 2.998670 AGAACTTCGTGTGATGCATCTG 59.001 45.455 26.32 13.89 0.00 2.90
1996 2209 3.325293 AGAACTTCGTGTGATGCATCT 57.675 42.857 26.32 3.58 0.00 2.90
1997 2210 3.181516 GGAAGAACTTCGTGTGATGCATC 60.182 47.826 20.14 20.14 40.37 3.91
1998 2211 2.744202 GGAAGAACTTCGTGTGATGCAT 59.256 45.455 0.00 0.00 40.37 3.96
2001 2214 3.919216 AGAGGAAGAACTTCGTGTGATG 58.081 45.455 13.22 0.00 40.37 3.07
2002 2215 4.608948 AAGAGGAAGAACTTCGTGTGAT 57.391 40.909 13.22 0.00 40.37 3.06
2003 2216 5.723672 ATAAGAGGAAGAACTTCGTGTGA 57.276 39.130 13.22 4.60 40.37 3.58
2004 2217 9.021863 GTATTATAAGAGGAAGAACTTCGTGTG 57.978 37.037 13.22 0.00 40.37 3.82
2005 2218 8.746530 TGTATTATAAGAGGAAGAACTTCGTGT 58.253 33.333 13.22 7.60 40.37 4.49
2006 2219 9.582431 TTGTATTATAAGAGGAAGAACTTCGTG 57.418 33.333 13.22 0.00 40.37 4.35
2030 2265 3.542712 ACTGCGCAAGTTGTTAGATTG 57.457 42.857 13.05 0.00 34.57 2.67
2045 2280 1.722011 CCAACCAAGTACCTACTGCG 58.278 55.000 0.00 0.00 36.50 5.18
2048 2283 1.345063 ACGCCAACCAAGTACCTACT 58.655 50.000 0.00 0.00 38.39 2.57
2049 2284 2.174363 AACGCCAACCAAGTACCTAC 57.826 50.000 0.00 0.00 0.00 3.18
2057 2292 1.135333 GGTGAAAGAAACGCCAACCAA 59.865 47.619 0.00 0.00 37.78 3.67
2064 2299 3.624900 GTTACAAGGGTGAAAGAAACGC 58.375 45.455 0.00 0.00 0.00 4.84
2065 2300 3.847105 GCGTTACAAGGGTGAAAGAAACG 60.847 47.826 0.00 0.00 40.85 3.60
2066 2301 3.549423 GGCGTTACAAGGGTGAAAGAAAC 60.549 47.826 0.00 0.00 0.00 2.78
2067 2302 2.619646 GGCGTTACAAGGGTGAAAGAAA 59.380 45.455 0.00 0.00 0.00 2.52
2068 2303 2.223745 GGCGTTACAAGGGTGAAAGAA 58.776 47.619 0.00 0.00 0.00 2.52
2069 2304 1.543871 GGGCGTTACAAGGGTGAAAGA 60.544 52.381 0.00 0.00 0.00 2.52
2070 2305 0.879090 GGGCGTTACAAGGGTGAAAG 59.121 55.000 0.00 0.00 0.00 2.62
2071 2306 0.537828 GGGGCGTTACAAGGGTGAAA 60.538 55.000 0.00 0.00 0.00 2.69
2072 2307 1.073548 GGGGCGTTACAAGGGTGAA 59.926 57.895 0.00 0.00 0.00 3.18
2073 2308 2.751688 GGGGCGTTACAAGGGTGA 59.248 61.111 0.00 0.00 0.00 4.02
2074 2309 2.744709 CGGGGCGTTACAAGGGTG 60.745 66.667 0.00 0.00 0.00 4.61
2075 2310 4.024545 CCGGGGCGTTACAAGGGT 62.025 66.667 0.00 0.00 0.00 4.34
2133 2368 0.250467 ACGCAAGCAGATGACAAGGT 60.250 50.000 0.00 0.00 45.62 3.50
2169 2405 8.736244 TGACATGATATGAAATGCAGATAATGG 58.264 33.333 0.00 0.00 40.12 3.16
2173 2409 9.681062 ATGATGACATGATATGAAATGCAGATA 57.319 29.630 0.00 0.00 35.21 1.98
2220 2457 0.525455 TCGGATGCATGAGACGAACG 60.525 55.000 2.46 0.00 0.00 3.95
2325 2564 2.660189 GGTCCATTCCGAGAACGTTA 57.340 50.000 0.00 0.00 37.88 3.18
2479 2723 0.392706 GGGTTTTGGGGCTGTTTGAG 59.607 55.000 0.00 0.00 0.00 3.02
2517 2763 1.802365 TCGTGATCGAACGACAGAGAA 59.198 47.619 8.21 0.00 46.99 2.87
2586 2835 3.441961 GGGGAGGGGGTGTTTATATAGGA 60.442 52.174 0.00 0.00 0.00 2.94
3127 3399 2.683933 GAGGGCGAGGTGGAGGAA 60.684 66.667 0.00 0.00 0.00 3.36
3237 3515 4.013050 GACTTGGAAGAATTTGAGGGAGG 58.987 47.826 0.00 0.00 0.00 4.30
3238 3516 4.013050 GGACTTGGAAGAATTTGAGGGAG 58.987 47.826 0.00 0.00 0.00 4.30
3239 3517 3.657727 AGGACTTGGAAGAATTTGAGGGA 59.342 43.478 0.00 0.00 0.00 4.20
3240 3518 3.760684 CAGGACTTGGAAGAATTTGAGGG 59.239 47.826 0.00 0.00 0.00 4.30
3309 3589 1.353804 GGCGAAACGAAGCAACACA 59.646 52.632 0.00 0.00 34.54 3.72
3310 3590 1.370051 GGGCGAAACGAAGCAACAC 60.370 57.895 0.00 0.00 34.54 3.32
3327 3607 8.761497 AGACGAACATTTCAATATATTACACGG 58.239 33.333 0.00 0.00 0.00 4.94
3340 3620 2.616960 CATCCCGAGACGAACATTTCA 58.383 47.619 0.00 0.00 0.00 2.69
3356 3636 8.243426 TGTAATTGAACAAAATGTAGAGCATCC 58.757 33.333 0.00 0.00 36.67 3.51
3556 3839 4.502105 AATACATGGCATACACCACTGA 57.498 40.909 0.00 0.00 44.17 3.41
3615 3898 5.552870 ATCAGAAACATTACGGAGCCTAT 57.447 39.130 0.00 0.00 0.00 2.57
3660 3947 6.648725 AGCAGACAAAGACTTAGAGAAATCAC 59.351 38.462 0.00 0.00 0.00 3.06
3661 3948 6.648310 CAGCAGACAAAGACTTAGAGAAATCA 59.352 38.462 0.00 0.00 0.00 2.57
3662 3949 6.648725 ACAGCAGACAAAGACTTAGAGAAATC 59.351 38.462 0.00 0.00 0.00 2.17
3698 3989 6.935167 TCTCTGTAGCATCAAGTTTACATGA 58.065 36.000 0.00 0.00 0.00 3.07
3822 4113 8.239998 GCAAAAGTAGAGCAAGATTAAGTCATT 58.760 33.333 0.00 0.00 0.00 2.57
3902 4193 6.091849 GCATAGCATGTATGGATCAACTACAG 59.908 42.308 13.61 0.00 0.00 2.74
4260 4560 9.125026 GGAATTACTGGACATGACAGAAATAAT 57.875 33.333 22.58 14.99 39.24 1.28
4285 4587 3.753294 ACAGGTTCACAGACTTAGTGG 57.247 47.619 0.00 0.00 37.58 4.00
4308 4611 7.902920 AAGGACATGGCAAGATTACAAATAT 57.097 32.000 0.00 0.00 0.00 1.28
4338 4642 8.934825 GCTATCTCCAGAAATCAATAGAACATC 58.065 37.037 0.00 0.00 0.00 3.06
4404 4708 5.231702 ACATGAAAACAAAAGGCATGGAT 57.768 34.783 0.00 0.00 40.34 3.41
4463 4767 2.293399 GTCCAAAACACCAACTAGGCAG 59.707 50.000 0.00 0.00 43.14 4.85
4474 4778 4.045636 AGCAACAATCTGTCCAAAACAC 57.954 40.909 0.00 0.00 33.24 3.32
4504 4808 2.819608 GGTGCAACACATACACTCCAAT 59.180 45.455 0.00 0.00 39.98 3.16
4776 5081 6.995686 TCCAGAACTGAACAAGCATTAAGTTA 59.004 34.615 3.19 0.00 0.00 2.24
4854 5159 1.544246 GGCAAGTTTAAATGAGGCCGT 59.456 47.619 0.00 0.00 0.00 5.68
5026 5331 1.531264 CGAACGAATCCTCACGATCGT 60.531 52.381 16.60 16.60 44.78 3.73
5172 5480 1.922570 ACAAGTGAATAGGTAGCGCG 58.077 50.000 0.00 0.00 0.00 6.86
5229 5538 2.290960 GGTTTGCTAGGAAGGGTGACAT 60.291 50.000 0.00 0.00 0.00 3.06
5387 5697 4.270008 CCTTCCACCCTTTACCAAGTATG 58.730 47.826 0.00 0.00 0.00 2.39
5486 5798 0.233848 CAACCGTGTAAGGAACGCAC 59.766 55.000 0.00 0.00 39.69 5.34
5848 6164 7.138736 AGACATTTCGACAATGGTAAAACAAG 58.861 34.615 18.26 0.00 32.14 3.16
5950 6266 2.075837 GGGTGTCCCAACTTAGCCT 58.924 57.895 0.00 0.00 44.65 4.58
6055 6371 7.148869 GGTTGATGCGTTTTAATTAAGGTCAAC 60.149 37.037 18.53 18.53 40.33 3.18
6152 6468 3.447586 TGATCCTGAACTCCTTCTTACGG 59.552 47.826 0.00 0.00 0.00 4.02
6159 6475 4.594920 TCAAGAAGTGATCCTGAACTCCTT 59.405 41.667 0.00 0.00 0.00 3.36
6251 6569 1.016130 GCAGCAGCGACTAAGCAAGA 61.016 55.000 0.00 0.00 40.15 3.02
6418 6738 6.451064 AGGAACTCCAAAACAAGTAAACAG 57.549 37.500 0.00 0.00 38.89 3.16
6440 6762 4.742417 TGATCGAAGAAGAAGCAGAAGAG 58.258 43.478 0.00 0.00 43.58 2.85
6622 6944 7.201812 GCAAGGTGGATATCATTACATCAACAA 60.202 37.037 4.83 0.00 28.19 2.83
6750 7073 6.819649 CAGATTGGATGCCAACAAAAACATAT 59.180 34.615 0.24 0.00 46.95 1.78
6759 7082 3.130869 GCAATACAGATTGGATGCCAACA 59.869 43.478 0.24 0.00 46.95 3.33
6768 7091 2.355756 CGGTTCCAGCAATACAGATTGG 59.644 50.000 0.23 0.00 42.44 3.16
6780 7103 4.023536 TCAAAATGTAAGAACGGTTCCAGC 60.024 41.667 16.84 7.99 0.00 4.85
6787 7110 5.977129 AGCAAAAGTCAAAATGTAAGAACGG 59.023 36.000 0.00 0.00 0.00 4.44
6788 7111 7.329582 CAAGCAAAAGTCAAAATGTAAGAACG 58.670 34.615 0.00 0.00 0.00 3.95
6809 7133 2.967615 GACTATCGCGGGGCAAGC 60.968 66.667 6.13 0.00 0.00 4.01
6813 7137 0.531974 TCAAATGACTATCGCGGGGC 60.532 55.000 6.13 0.00 0.00 5.80
6816 7140 2.128035 GAGGTCAAATGACTATCGCGG 58.872 52.381 6.13 0.00 44.20 6.46
6824 7148 4.510340 AGTTGTACAACGAGGTCAAATGAC 59.490 41.667 28.21 4.96 45.50 3.06
6847 7171 9.507329 AGATCAAAGCAAGTGAAAAGATAACTA 57.493 29.630 0.00 0.00 0.00 2.24
6850 7174 8.632679 ACAAGATCAAAGCAAGTGAAAAGATAA 58.367 29.630 0.00 0.00 0.00 1.75
6852 7176 7.047460 ACAAGATCAAAGCAAGTGAAAAGAT 57.953 32.000 0.00 0.00 0.00 2.40
6865 7189 6.373779 ACAATTAACGCTGACAAGATCAAAG 58.626 36.000 0.00 0.00 36.69 2.77
6911 7235 3.445096 GGCATCACTGTTCCTAGCAAAAT 59.555 43.478 0.00 0.00 0.00 1.82
6919 7243 1.352017 TCACATGGCATCACTGTTCCT 59.648 47.619 0.00 0.00 0.00 3.36
6944 7268 1.611673 CGTTGATCACAGGCCTTCCTT 60.612 52.381 0.00 0.00 41.93 3.36
6956 7280 2.928301 GCAGCTCACTCTTCGTTGATCA 60.928 50.000 0.00 0.00 0.00 2.92
6963 7287 3.472533 GCTGCAGCTCACTCTTCG 58.527 61.111 31.33 0.00 38.21 3.79
7004 7328 3.936453 GCACTCTCTTCTCTAAGACGAGA 59.064 47.826 11.32 11.32 44.26 4.04
7020 7344 5.114780 CACAGCTAACAGATAATGCACTCT 58.885 41.667 0.00 0.00 0.00 3.24
7053 7383 9.031537 TCCATTACAGAGTAATAACTTGTCTCA 57.968 33.333 2.40 0.00 35.56 3.27
7067 7397 5.457197 CCATCATCCCAATCCATTACAGAGT 60.457 44.000 0.00 0.00 0.00 3.24
7071 7401 5.603915 ATCCATCATCCCAATCCATTACA 57.396 39.130 0.00 0.00 0.00 2.41
7088 7418 3.295973 CACCCGGTCCATTTTTATCCAT 58.704 45.455 0.00 0.00 0.00 3.41
7103 7433 0.541863 ACAAGAATAGGAGCACCCGG 59.458 55.000 0.00 0.00 40.87 5.73
7118 7448 8.908678 CAAACATACATGTCTCATCAAAACAAG 58.091 33.333 0.00 0.00 40.80 3.16
7128 7458 4.565022 TCGAAGCAAACATACATGTCTCA 58.435 39.130 0.00 0.00 40.80 3.27
7129 7459 5.107104 TGTTCGAAGCAAACATACATGTCTC 60.107 40.000 0.00 0.00 40.80 3.36
7174 7511 5.772672 AGGTTTTGCAATGGACAATACACTA 59.227 36.000 0.00 0.00 32.62 2.74
7218 7556 3.138304 GCAAATCGATACCATAGGCACA 58.862 45.455 0.00 0.00 0.00 4.57
7225 7563 3.401033 TGATCCGCAAATCGATACCAT 57.599 42.857 0.00 0.00 41.67 3.55
7236 7574 2.636647 TGCCTCATTATGATCCGCAA 57.363 45.000 8.61 0.00 0.00 4.85
7312 7651 1.077357 TCCACGGGCAACACAAACT 60.077 52.632 0.00 0.00 39.74 2.66
7345 7710 5.822519 TGTTGTGCTCCTGTAATTCCATATC 59.177 40.000 0.00 0.00 0.00 1.63
7346 7711 5.754782 TGTTGTGCTCCTGTAATTCCATAT 58.245 37.500 0.00 0.00 0.00 1.78
7459 7862 1.937223 CTTTTGAAAAACAACGGGGGC 59.063 47.619 0.00 0.00 38.29 5.80
7465 7868 7.624360 ATCCTTTTCCCTTTTGAAAAACAAC 57.376 32.000 0.00 0.00 42.05 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.