Multiple sequence alignment - TraesCS6D01G080000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G080000 chr6D 100.000 2216 0 0 1 2216 45519387 45517172 0.000000e+00 4093.0
1 TraesCS6D01G080000 chr6D 84.646 254 16 7 17 268 104078060 104078292 4.760000e-57 231.0
2 TraesCS6D01G080000 chr6D 96.078 51 1 1 210 260 45507030 45507079 5.070000e-12 82.4
3 TraesCS6D01G080000 chr3D 98.180 1868 25 8 351 2216 589280079 589281939 0.000000e+00 3253.0
4 TraesCS6D01G080000 chr5D 97.858 1867 35 4 351 2216 6188403 6186541 0.000000e+00 3221.0
5 TraesCS6D01G080000 chr5D 97.697 1867 37 5 351 2216 503278763 503280624 0.000000e+00 3205.0
6 TraesCS6D01G080000 chr5D 97.565 1848 38 6 351 2197 432404034 432405875 0.000000e+00 3157.0
7 TraesCS6D01G080000 chr1D 97.805 1868 34 6 351 2216 254398647 254400509 0.000000e+00 3216.0
8 TraesCS6D01G080000 chr1A 97.752 1824 27 6 351 2172 554511711 554509900 0.000000e+00 3129.0
9 TraesCS6D01G080000 chr1A 87.324 142 15 2 1 142 576158340 576158202 2.280000e-35 159.0
10 TraesCS6D01G080000 chr5A 96.415 1869 58 8 351 2216 607273863 607272001 0.000000e+00 3072.0
11 TraesCS6D01G080000 chr4A 96.002 1876 60 8 351 2216 309514594 309512724 0.000000e+00 3035.0
12 TraesCS6D01G080000 chr4A 95.459 1872 70 11 351 2216 310738042 310736180 0.000000e+00 2972.0
13 TraesCS6D01G080000 chr4B 95.970 1861 57 7 358 2216 308695927 308694083 0.000000e+00 3005.0
14 TraesCS6D01G080000 chr2A 92.095 253 19 1 17 268 86682486 86682738 2.710000e-94 355.0
15 TraesCS6D01G080000 chr6A 92.857 210 14 1 60 268 52033587 52033796 9.940000e-79 303.0
16 TraesCS6D01G080000 chr6A 98.214 56 1 0 266 321 59957076 59957021 5.040000e-17 99.0
17 TraesCS6D01G080000 chr6A 89.706 68 4 1 266 333 59910600 59910536 1.410000e-12 84.2
18 TraesCS6D01G080000 chr2D 85.130 269 17 10 1 268 648542896 648543142 1.020000e-63 254.0
19 TraesCS6D01G080000 chr2D 85.211 142 9 6 1 142 117800477 117800348 3.840000e-28 135.0
20 TraesCS6D01G080000 chr7B 84.507 142 10 6 1 142 263150309 263150180 1.790000e-26 130.0
21 TraesCS6D01G080000 chr7A 98.361 61 1 0 1 61 47924299 47924239 8.370000e-20 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G080000 chr6D 45517172 45519387 2215 True 4093 4093 100.000 1 2216 1 chr6D.!!$R1 2215
1 TraesCS6D01G080000 chr3D 589280079 589281939 1860 False 3253 3253 98.180 351 2216 1 chr3D.!!$F1 1865
2 TraesCS6D01G080000 chr5D 6186541 6188403 1862 True 3221 3221 97.858 351 2216 1 chr5D.!!$R1 1865
3 TraesCS6D01G080000 chr5D 503278763 503280624 1861 False 3205 3205 97.697 351 2216 1 chr5D.!!$F2 1865
4 TraesCS6D01G080000 chr5D 432404034 432405875 1841 False 3157 3157 97.565 351 2197 1 chr5D.!!$F1 1846
5 TraesCS6D01G080000 chr1D 254398647 254400509 1862 False 3216 3216 97.805 351 2216 1 chr1D.!!$F1 1865
6 TraesCS6D01G080000 chr1A 554509900 554511711 1811 True 3129 3129 97.752 351 2172 1 chr1A.!!$R1 1821
7 TraesCS6D01G080000 chr5A 607272001 607273863 1862 True 3072 3072 96.415 351 2216 1 chr5A.!!$R1 1865
8 TraesCS6D01G080000 chr4A 309512724 309514594 1870 True 3035 3035 96.002 351 2216 1 chr4A.!!$R1 1865
9 TraesCS6D01G080000 chr4A 310736180 310738042 1862 True 2972 2972 95.459 351 2216 1 chr4A.!!$R2 1865
10 TraesCS6D01G080000 chr4B 308694083 308695927 1844 True 3005 3005 95.970 358 2216 1 chr4B.!!$R1 1858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.0297 GCGGTAGCCAACGTGTTTTT 59.97 50.0 0.0 0.0 37.42 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2003 0.323302 TGCGTCCTTGGATTGCTGTA 59.677 50.0 14.72 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.917760 CTCGTCCCGGATCCTGCC 61.918 72.222 10.75 0.00 0.00 4.85
33 34 2.202932 CCGGATCCGAGGCTTGTG 60.203 66.667 35.42 12.07 42.83 3.33
34 35 2.202932 CGGATCCGAGGCTTGTGG 60.203 66.667 30.62 0.00 42.83 4.17
35 36 2.190578 GGATCCGAGGCTTGTGGG 59.809 66.667 0.00 0.00 0.00 4.61
36 37 2.514824 GATCCGAGGCTTGTGGGC 60.515 66.667 0.12 0.00 41.20 5.36
37 38 3.329542 GATCCGAGGCTTGTGGGCA 62.330 63.158 0.12 0.00 43.56 5.36
38 39 3.628646 ATCCGAGGCTTGTGGGCAC 62.629 63.158 0.12 0.00 43.56 5.01
41 42 4.329545 GAGGCTTGTGGGCACGGA 62.330 66.667 0.00 0.00 43.56 4.69
42 43 4.335647 AGGCTTGTGGGCACGGAG 62.336 66.667 0.00 0.00 43.56 4.63
52 53 4.443266 GCACGGAGGCGAGCTTCT 62.443 66.667 7.13 0.00 0.00 2.85
53 54 2.202676 CACGGAGGCGAGCTTCTC 60.203 66.667 7.13 0.00 0.00 2.87
54 55 3.453679 ACGGAGGCGAGCTTCTCC 61.454 66.667 16.92 16.92 44.50 3.71
56 57 4.214327 GGAGGCGAGCTTCTCCGG 62.214 72.222 13.50 0.00 39.95 5.14
90 91 4.344865 GGTGGCAGCGGGAAAGGA 62.345 66.667 0.00 0.00 0.00 3.36
91 92 2.747855 GTGGCAGCGGGAAAGGAG 60.748 66.667 0.00 0.00 0.00 3.69
92 93 4.033776 TGGCAGCGGGAAAGGAGG 62.034 66.667 0.00 0.00 0.00 4.30
100 101 4.111053 GGAAAGGAGGCGGGGGTC 62.111 72.222 0.00 0.00 0.00 4.46
101 102 4.468689 GAAAGGAGGCGGGGGTCG 62.469 72.222 0.00 0.00 42.76 4.79
113 114 3.703127 GGGTCGTGGGGGAGACAC 61.703 72.222 0.00 0.00 39.01 3.67
122 123 4.208686 GGGAGACACGCGGGCTAG 62.209 72.222 9.12 0.00 0.00 3.42
123 124 4.208686 GGAGACACGCGGGCTAGG 62.209 72.222 9.12 0.00 0.00 3.02
124 125 3.450115 GAGACACGCGGGCTAGGT 61.450 66.667 9.12 0.00 0.00 3.08
125 126 3.412879 GAGACACGCGGGCTAGGTC 62.413 68.421 9.12 6.73 0.00 3.85
126 127 3.755628 GACACGCGGGCTAGGTCA 61.756 66.667 9.12 0.00 0.00 4.02
127 128 3.984200 GACACGCGGGCTAGGTCAC 62.984 68.421 9.12 0.00 0.00 3.67
133 134 3.480133 GGGCTAGGTCACGGGCAT 61.480 66.667 0.00 0.00 0.00 4.40
134 135 2.109181 GGCTAGGTCACGGGCATC 59.891 66.667 0.00 0.00 0.00 3.91
135 136 2.279517 GCTAGGTCACGGGCATCG 60.280 66.667 0.00 0.00 45.88 3.84
136 137 2.417516 CTAGGTCACGGGCATCGG 59.582 66.667 3.86 0.00 44.45 4.18
137 138 3.792053 CTAGGTCACGGGCATCGGC 62.792 68.421 3.86 0.00 44.45 5.54
156 157 3.597728 GCGGCGGTAGGAGAGGAG 61.598 72.222 9.78 0.00 0.00 3.69
157 158 2.907917 CGGCGGTAGGAGAGGAGG 60.908 72.222 0.00 0.00 0.00 4.30
158 159 3.228017 GGCGGTAGGAGAGGAGGC 61.228 72.222 0.00 0.00 0.00 4.70
159 160 2.442272 GCGGTAGGAGAGGAGGCA 60.442 66.667 0.00 0.00 0.00 4.75
160 161 2.494530 GCGGTAGGAGAGGAGGCAG 61.495 68.421 0.00 0.00 0.00 4.85
161 162 1.830408 CGGTAGGAGAGGAGGCAGG 60.830 68.421 0.00 0.00 0.00 4.85
162 163 1.458588 GGTAGGAGAGGAGGCAGGG 60.459 68.421 0.00 0.00 0.00 4.45
163 164 1.458588 GTAGGAGAGGAGGCAGGGG 60.459 68.421 0.00 0.00 0.00 4.79
164 165 1.941820 TAGGAGAGGAGGCAGGGGT 60.942 63.158 0.00 0.00 0.00 4.95
165 166 1.950748 TAGGAGAGGAGGCAGGGGTC 61.951 65.000 0.00 0.00 0.00 4.46
166 167 3.151022 GAGAGGAGGCAGGGGTCG 61.151 72.222 0.00 0.00 0.00 4.79
185 186 4.867599 GGGGAAGACGCGCGGTAG 62.868 72.222 35.22 6.61 0.00 3.18
188 189 4.789075 GAAGACGCGCGGTAGCCA 62.789 66.667 35.22 0.00 41.18 4.75
189 190 4.367023 AAGACGCGCGGTAGCCAA 62.367 61.111 35.22 0.00 41.18 4.52
195 196 3.039588 CGCGGTAGCCAACGTGTT 61.040 61.111 0.00 0.00 41.18 3.32
196 197 2.600475 CGCGGTAGCCAACGTGTTT 61.600 57.895 0.00 0.00 41.18 2.83
197 198 1.650363 GCGGTAGCCAACGTGTTTT 59.350 52.632 0.00 0.00 37.42 2.43
198 199 0.029700 GCGGTAGCCAACGTGTTTTT 59.970 50.000 0.00 0.00 37.42 1.94
217 218 3.755112 TTTTGTCGGTACCTGTGATGA 57.245 42.857 10.90 0.00 0.00 2.92
218 219 2.736144 TTGTCGGTACCTGTGATGAC 57.264 50.000 10.90 9.23 0.00 3.06
219 220 0.524414 TGTCGGTACCTGTGATGACG 59.476 55.000 10.90 0.00 0.00 4.35
220 221 0.524862 GTCGGTACCTGTGATGACGT 59.475 55.000 10.90 0.00 0.00 4.34
221 222 0.524414 TCGGTACCTGTGATGACGTG 59.476 55.000 10.90 0.00 0.00 4.49
222 223 0.457853 CGGTACCTGTGATGACGTGG 60.458 60.000 10.90 0.00 0.00 4.94
223 224 0.892755 GGTACCTGTGATGACGTGGA 59.107 55.000 4.06 0.00 0.00 4.02
224 225 1.480954 GGTACCTGTGATGACGTGGAT 59.519 52.381 4.06 0.00 0.00 3.41
225 226 2.691526 GGTACCTGTGATGACGTGGATA 59.308 50.000 4.06 0.00 0.00 2.59
226 227 3.243434 GGTACCTGTGATGACGTGGATAG 60.243 52.174 4.06 0.00 0.00 2.08
227 228 1.137086 ACCTGTGATGACGTGGATAGC 59.863 52.381 0.00 0.00 0.00 2.97
228 229 1.136891 CCTGTGATGACGTGGATAGCA 59.863 52.381 0.00 0.00 0.00 3.49
229 230 2.467838 CTGTGATGACGTGGATAGCAG 58.532 52.381 0.00 0.00 0.00 4.24
230 231 2.099405 TGTGATGACGTGGATAGCAGA 58.901 47.619 0.00 0.00 0.00 4.26
231 232 2.495669 TGTGATGACGTGGATAGCAGAA 59.504 45.455 0.00 0.00 0.00 3.02
232 233 3.119291 GTGATGACGTGGATAGCAGAAG 58.881 50.000 0.00 0.00 0.00 2.85
233 234 2.101415 TGATGACGTGGATAGCAGAAGG 59.899 50.000 0.00 0.00 0.00 3.46
234 235 1.847328 TGACGTGGATAGCAGAAGGA 58.153 50.000 0.00 0.00 0.00 3.36
235 236 1.751351 TGACGTGGATAGCAGAAGGAG 59.249 52.381 0.00 0.00 0.00 3.69
236 237 1.067821 GACGTGGATAGCAGAAGGAGG 59.932 57.143 0.00 0.00 0.00 4.30
237 238 0.249657 CGTGGATAGCAGAAGGAGGC 60.250 60.000 0.00 0.00 0.00 4.70
238 239 0.249657 GTGGATAGCAGAAGGAGGCG 60.250 60.000 0.00 0.00 34.54 5.52
239 240 1.301322 GGATAGCAGAAGGAGGCGC 60.301 63.158 0.00 0.00 34.54 6.53
240 241 1.301322 GATAGCAGAAGGAGGCGCC 60.301 63.158 21.89 21.89 34.54 6.53
241 242 2.723586 GATAGCAGAAGGAGGCGCCC 62.724 65.000 26.15 15.07 37.37 6.13
243 244 4.496336 GCAGAAGGAGGCGCCCAT 62.496 66.667 26.15 9.90 37.37 4.00
244 245 2.515523 CAGAAGGAGGCGCCCATG 60.516 66.667 26.15 9.31 37.37 3.66
245 246 4.496336 AGAAGGAGGCGCCCATGC 62.496 66.667 26.15 11.63 37.37 4.06
255 256 2.591715 GCCCATGCCGCGACTATT 60.592 61.111 8.23 0.00 0.00 1.73
256 257 1.301401 GCCCATGCCGCGACTATTA 60.301 57.895 8.23 0.00 0.00 0.98
257 258 0.882927 GCCCATGCCGCGACTATTAA 60.883 55.000 8.23 0.00 0.00 1.40
258 259 1.808411 CCCATGCCGCGACTATTAAT 58.192 50.000 8.23 0.00 0.00 1.40
259 260 1.464608 CCCATGCCGCGACTATTAATG 59.535 52.381 8.23 0.00 0.00 1.90
260 261 1.464608 CCATGCCGCGACTATTAATGG 59.535 52.381 8.23 0.00 0.00 3.16
261 262 1.464608 CATGCCGCGACTATTAATGGG 59.535 52.381 8.23 0.00 0.00 4.00
262 263 0.466543 TGCCGCGACTATTAATGGGT 59.533 50.000 8.23 0.05 0.00 4.51
263 264 1.134340 TGCCGCGACTATTAATGGGTT 60.134 47.619 8.23 0.00 0.00 4.11
264 265 1.944709 GCCGCGACTATTAATGGGTTT 59.055 47.619 8.23 0.00 0.00 3.27
265 266 3.132925 GCCGCGACTATTAATGGGTTTA 58.867 45.455 8.23 0.00 0.00 2.01
266 267 3.560896 GCCGCGACTATTAATGGGTTTAA 59.439 43.478 8.23 0.00 34.37 1.52
267 268 4.214758 GCCGCGACTATTAATGGGTTTAAT 59.785 41.667 8.23 0.00 42.05 1.40
268 269 5.278120 GCCGCGACTATTAATGGGTTTAATT 60.278 40.000 8.23 0.00 40.29 1.40
269 270 6.140110 CCGCGACTATTAATGGGTTTAATTG 58.860 40.000 8.23 0.00 40.29 2.32
270 271 5.623673 CGCGACTATTAATGGGTTTAATTGC 59.376 40.000 0.00 0.00 40.29 3.56
271 272 5.918576 GCGACTATTAATGGGTTTAATTGCC 59.081 40.000 3.68 0.00 40.29 4.52
272 273 6.460399 GCGACTATTAATGGGTTTAATTGCCA 60.460 38.462 3.68 0.00 40.29 4.92
273 274 7.484975 CGACTATTAATGGGTTTAATTGCCAA 58.515 34.615 3.68 0.00 40.29 4.52
274 275 8.141268 CGACTATTAATGGGTTTAATTGCCAAT 58.859 33.333 3.68 0.00 40.29 3.16
275 276 9.830975 GACTATTAATGGGTTTAATTGCCAATT 57.169 29.630 7.93 7.93 40.29 2.32
276 277 9.612066 ACTATTAATGGGTTTAATTGCCAATTG 57.388 29.630 12.86 0.00 40.29 2.32
277 278 6.749923 TTAATGGGTTTAATTGCCAATTGC 57.250 33.333 12.86 3.31 41.77 3.56
278 279 3.064900 TGGGTTTAATTGCCAATTGCC 57.935 42.857 12.86 11.19 40.16 4.52
279 280 2.290577 TGGGTTTAATTGCCAATTGCCC 60.291 45.455 21.92 21.92 40.16 5.36
280 281 2.364632 GGTTTAATTGCCAATTGCCCC 58.635 47.619 12.86 5.65 40.16 5.80
281 282 2.290577 GGTTTAATTGCCAATTGCCCCA 60.291 45.455 12.86 0.00 40.16 4.96
282 283 2.746904 GTTTAATTGCCAATTGCCCCAC 59.253 45.455 12.86 0.00 40.16 4.61
283 284 1.949799 TAATTGCCAATTGCCCCACT 58.050 45.000 12.86 0.00 40.16 4.00
284 285 0.614812 AATTGCCAATTGCCCCACTC 59.385 50.000 0.97 0.00 40.16 3.51
285 286 1.266867 ATTGCCAATTGCCCCACTCC 61.267 55.000 0.00 0.00 40.16 3.85
286 287 3.076916 GCCAATTGCCCCACTCCC 61.077 66.667 0.00 0.00 0.00 4.30
287 288 2.444696 CCAATTGCCCCACTCCCA 59.555 61.111 0.00 0.00 0.00 4.37
288 289 1.229145 CCAATTGCCCCACTCCCAA 60.229 57.895 0.00 0.00 0.00 4.12
289 290 0.835543 CCAATTGCCCCACTCCCAAA 60.836 55.000 0.00 0.00 0.00 3.28
290 291 1.278537 CAATTGCCCCACTCCCAAAT 58.721 50.000 0.00 0.00 0.00 2.32
291 292 1.629861 CAATTGCCCCACTCCCAAATT 59.370 47.619 0.00 0.00 0.00 1.82
292 293 2.836981 CAATTGCCCCACTCCCAAATTA 59.163 45.455 0.00 0.00 0.00 1.40
293 294 1.931635 TTGCCCCACTCCCAAATTAC 58.068 50.000 0.00 0.00 0.00 1.89
294 295 1.080638 TGCCCCACTCCCAAATTACT 58.919 50.000 0.00 0.00 0.00 2.24
295 296 2.280103 TGCCCCACTCCCAAATTACTA 58.720 47.619 0.00 0.00 0.00 1.82
296 297 2.241176 TGCCCCACTCCCAAATTACTAG 59.759 50.000 0.00 0.00 0.00 2.57
297 298 2.241430 GCCCCACTCCCAAATTACTAGT 59.759 50.000 0.00 0.00 0.00 2.57
298 299 3.886123 CCCCACTCCCAAATTACTAGTG 58.114 50.000 5.39 0.00 37.81 2.74
303 304 6.927294 CACTCCCAAATTACTAGTGGATTC 57.073 41.667 5.39 0.00 35.12 2.52
304 305 5.523916 CACTCCCAAATTACTAGTGGATTCG 59.476 44.000 5.39 0.00 35.12 3.34
305 306 5.424252 ACTCCCAAATTACTAGTGGATTCGA 59.576 40.000 5.39 2.87 34.05 3.71
306 307 6.099845 ACTCCCAAATTACTAGTGGATTCGAT 59.900 38.462 5.39 0.00 34.05 3.59
307 308 7.289317 ACTCCCAAATTACTAGTGGATTCGATA 59.711 37.037 5.39 0.00 34.05 2.92
308 309 7.667557 TCCCAAATTACTAGTGGATTCGATAG 58.332 38.462 5.39 0.00 34.05 2.08
309 310 6.369065 CCCAAATTACTAGTGGATTCGATAGC 59.631 42.308 5.39 0.00 34.05 2.97
310 311 6.929049 CCAAATTACTAGTGGATTCGATAGCA 59.071 38.462 5.39 0.00 34.05 3.49
311 312 7.095607 CCAAATTACTAGTGGATTCGATAGCAC 60.096 40.741 5.39 0.00 34.05 4.40
312 313 6.650427 ATTACTAGTGGATTCGATAGCACA 57.350 37.500 5.39 0.00 0.00 4.57
313 314 6.650427 TTACTAGTGGATTCGATAGCACAT 57.350 37.500 5.39 0.00 0.00 3.21
314 315 5.537300 ACTAGTGGATTCGATAGCACATT 57.463 39.130 0.00 0.00 0.00 2.71
315 316 6.650427 ACTAGTGGATTCGATAGCACATTA 57.350 37.500 0.00 0.00 0.00 1.90
316 317 6.682746 ACTAGTGGATTCGATAGCACATTAG 58.317 40.000 0.00 0.00 0.00 1.73
317 318 4.310769 AGTGGATTCGATAGCACATTAGC 58.689 43.478 0.00 0.00 0.00 3.09
318 319 4.058124 GTGGATTCGATAGCACATTAGCA 58.942 43.478 0.00 0.00 36.85 3.49
319 320 4.692625 GTGGATTCGATAGCACATTAGCAT 59.307 41.667 0.00 0.00 36.85 3.79
320 321 5.869344 GTGGATTCGATAGCACATTAGCATA 59.131 40.000 0.00 0.00 36.85 3.14
321 322 5.869344 TGGATTCGATAGCACATTAGCATAC 59.131 40.000 0.00 0.00 36.85 2.39
322 323 5.869344 GGATTCGATAGCACATTAGCATACA 59.131 40.000 0.00 0.00 36.85 2.29
323 324 6.536582 GGATTCGATAGCACATTAGCATACAT 59.463 38.462 0.00 0.00 36.85 2.29
324 325 7.065085 GGATTCGATAGCACATTAGCATACATT 59.935 37.037 0.00 0.00 36.85 2.71
325 326 9.087424 GATTCGATAGCACATTAGCATACATTA 57.913 33.333 0.00 0.00 36.85 1.90
326 327 8.825667 TTCGATAGCACATTAGCATACATTAA 57.174 30.769 0.00 0.00 36.85 1.40
327 328 8.239681 TCGATAGCACATTAGCATACATTAAC 57.760 34.615 0.00 0.00 36.85 2.01
328 329 7.061789 TCGATAGCACATTAGCATACATTAACG 59.938 37.037 0.00 0.00 36.85 3.18
329 330 5.673337 AGCACATTAGCATACATTAACGG 57.327 39.130 0.00 0.00 36.85 4.44
330 331 5.364778 AGCACATTAGCATACATTAACGGA 58.635 37.500 0.00 0.00 36.85 4.69
331 332 5.820423 AGCACATTAGCATACATTAACGGAA 59.180 36.000 0.00 0.00 36.85 4.30
332 333 5.907391 GCACATTAGCATACATTAACGGAAC 59.093 40.000 0.00 0.00 0.00 3.62
333 334 6.457663 GCACATTAGCATACATTAACGGAACA 60.458 38.462 0.00 0.00 0.00 3.18
334 335 7.639039 CACATTAGCATACATTAACGGAACAT 58.361 34.615 0.00 0.00 0.00 2.71
335 336 7.587392 CACATTAGCATACATTAACGGAACATG 59.413 37.037 0.00 0.00 0.00 3.21
336 337 7.282224 ACATTAGCATACATTAACGGAACATGT 59.718 33.333 0.00 0.00 0.00 3.21
337 338 7.618502 TTAGCATACATTAACGGAACATGTT 57.381 32.000 11.78 11.78 0.00 2.71
338 339 6.509418 AGCATACATTAACGGAACATGTTT 57.491 33.333 13.36 0.00 0.00 2.83
339 340 6.551736 AGCATACATTAACGGAACATGTTTC 58.448 36.000 13.36 10.02 0.00 2.78
340 341 5.741982 GCATACATTAACGGAACATGTTTCC 59.258 40.000 13.36 13.67 35.27 3.13
341 342 4.776795 ACATTAACGGAACATGTTTCCC 57.223 40.909 13.36 9.35 35.17 3.97
342 343 4.403734 ACATTAACGGAACATGTTTCCCT 58.596 39.130 13.36 1.53 35.17 4.20
343 344 4.830600 ACATTAACGGAACATGTTTCCCTT 59.169 37.500 13.36 12.67 35.17 3.95
344 345 6.005198 ACATTAACGGAACATGTTTCCCTTA 58.995 36.000 13.36 11.82 35.17 2.69
345 346 6.661805 ACATTAACGGAACATGTTTCCCTTAT 59.338 34.615 13.36 0.88 35.17 1.73
346 347 7.177744 ACATTAACGGAACATGTTTCCCTTATT 59.822 33.333 13.36 7.37 35.17 1.40
347 348 5.385509 AACGGAACATGTTTCCCTTATTG 57.614 39.130 13.36 0.00 35.17 1.90
348 349 3.192633 ACGGAACATGTTTCCCTTATTGC 59.807 43.478 13.36 0.00 35.17 3.56
349 350 3.428862 CGGAACATGTTTCCCTTATTGCC 60.429 47.826 13.36 4.14 35.17 4.52
353 354 5.760484 ACATGTTTCCCTTATTGCCAATT 57.240 34.783 0.00 0.00 0.00 2.32
413 414 5.076873 AGTATCCCAAAACTGCTTAGCAAA 58.923 37.500 8.68 0.00 38.41 3.68
680 686 4.204370 GTCGCCGTAAGTAAATACGTAACC 59.796 45.833 0.00 0.00 45.43 2.85
785 791 2.024655 ACAATCCACTGCCTTGATCCAT 60.025 45.455 0.00 0.00 0.00 3.41
788 794 2.449464 TCCACTGCCTTGATCCATTTG 58.551 47.619 0.00 0.00 0.00 2.32
941 950 3.883830 AGGAGTAATCAGCTGTGACAG 57.116 47.619 14.67 8.52 34.75 3.51
1234 1245 9.742552 GTCGTTAACTGAATTCTGAATAGAAAC 57.257 33.333 18.13 9.73 45.47 2.78
1413 1425 1.819288 TCTAGAGGGAAGTTGTGAGCG 59.181 52.381 0.00 0.00 0.00 5.03
1504 1516 4.491676 GCGACCTTGACTATCAACTACAA 58.508 43.478 0.00 0.00 32.21 2.41
1692 1711 8.405531 GCAGCCACAATATTATAAGTTTCTTCA 58.594 33.333 0.00 0.00 0.00 3.02
1983 2003 2.236766 GCAATGGGAGCTGAATATGCT 58.763 47.619 0.00 0.00 44.24 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.162690 ACAAGCCTCGGATCCGGC 62.163 66.667 32.79 27.54 46.65 6.13
16 17 2.202932 CACAAGCCTCGGATCCGG 60.203 66.667 32.79 22.45 40.25 5.14
17 18 2.202932 CCACAAGCCTCGGATCCG 60.203 66.667 28.62 28.62 41.35 4.18
18 19 2.190578 CCCACAAGCCTCGGATCC 59.809 66.667 0.00 0.00 0.00 3.36
19 20 2.514824 GCCCACAAGCCTCGGATC 60.515 66.667 0.00 0.00 0.00 3.36
20 21 3.329889 TGCCCACAAGCCTCGGAT 61.330 61.111 0.00 0.00 0.00 4.18
21 22 4.329545 GTGCCCACAAGCCTCGGA 62.330 66.667 0.00 0.00 0.00 4.55
24 25 4.329545 TCCGTGCCCACAAGCCTC 62.330 66.667 0.00 0.00 0.00 4.70
25 26 4.335647 CTCCGTGCCCACAAGCCT 62.336 66.667 0.00 0.00 0.00 4.58
36 37 2.202676 GAGAAGCTCGCCTCCGTG 60.203 66.667 0.00 0.00 35.54 4.94
37 38 3.453679 GGAGAAGCTCGCCTCCGT 61.454 66.667 12.24 0.00 39.49 4.69
39 40 4.214327 CCGGAGAAGCTCGCCTCC 62.214 72.222 15.85 15.85 44.18 4.30
40 41 4.882396 GCCGGAGAAGCTCGCCTC 62.882 72.222 5.05 0.00 33.90 4.70
73 74 4.344865 TCCTTTCCCGCTGCCACC 62.345 66.667 0.00 0.00 0.00 4.61
74 75 2.747855 CTCCTTTCCCGCTGCCAC 60.748 66.667 0.00 0.00 0.00 5.01
75 76 4.033776 CCTCCTTTCCCGCTGCCA 62.034 66.667 0.00 0.00 0.00 4.92
83 84 4.111053 GACCCCCGCCTCCTTTCC 62.111 72.222 0.00 0.00 0.00 3.13
84 85 4.468689 CGACCCCCGCCTCCTTTC 62.469 72.222 0.00 0.00 0.00 2.62
96 97 3.703127 GTGTCTCCCCCACGACCC 61.703 72.222 0.00 0.00 0.00 4.46
105 106 4.208686 CTAGCCCGCGTGTCTCCC 62.209 72.222 4.92 0.00 0.00 4.30
106 107 4.208686 CCTAGCCCGCGTGTCTCC 62.209 72.222 4.92 0.00 0.00 3.71
107 108 3.412879 GACCTAGCCCGCGTGTCTC 62.413 68.421 4.92 0.00 0.00 3.36
108 109 3.450115 GACCTAGCCCGCGTGTCT 61.450 66.667 4.92 0.89 0.00 3.41
109 110 3.755628 TGACCTAGCCCGCGTGTC 61.756 66.667 4.92 2.42 0.00 3.67
110 111 4.065281 GTGACCTAGCCCGCGTGT 62.065 66.667 4.92 0.00 0.00 4.49
116 117 3.462199 GATGCCCGTGACCTAGCCC 62.462 68.421 0.00 0.00 0.00 5.19
117 118 2.109181 GATGCCCGTGACCTAGCC 59.891 66.667 0.00 0.00 0.00 3.93
118 119 2.279517 CGATGCCCGTGACCTAGC 60.280 66.667 0.00 0.00 0.00 3.42
119 120 2.417516 CCGATGCCCGTGACCTAG 59.582 66.667 0.00 0.00 36.31 3.02
120 121 3.845259 GCCGATGCCCGTGACCTA 61.845 66.667 0.00 0.00 36.31 3.08
139 140 3.597728 CTCCTCTCCTACCGCCGC 61.598 72.222 0.00 0.00 0.00 6.53
140 141 2.907917 CCTCCTCTCCTACCGCCG 60.908 72.222 0.00 0.00 0.00 6.46
141 142 3.228017 GCCTCCTCTCCTACCGCC 61.228 72.222 0.00 0.00 0.00 6.13
142 143 2.442272 TGCCTCCTCTCCTACCGC 60.442 66.667 0.00 0.00 0.00 5.68
143 144 1.830408 CCTGCCTCCTCTCCTACCG 60.830 68.421 0.00 0.00 0.00 4.02
144 145 1.458588 CCCTGCCTCCTCTCCTACC 60.459 68.421 0.00 0.00 0.00 3.18
145 146 1.458588 CCCCTGCCTCCTCTCCTAC 60.459 68.421 0.00 0.00 0.00 3.18
146 147 1.941820 ACCCCTGCCTCCTCTCCTA 60.942 63.158 0.00 0.00 0.00 2.94
147 148 3.288381 ACCCCTGCCTCCTCTCCT 61.288 66.667 0.00 0.00 0.00 3.69
148 149 2.766229 GACCCCTGCCTCCTCTCC 60.766 72.222 0.00 0.00 0.00 3.71
149 150 3.151022 CGACCCCTGCCTCCTCTC 61.151 72.222 0.00 0.00 0.00 3.20
168 169 4.867599 CTACCGCGCGTCTTCCCC 62.868 72.222 29.95 0.00 0.00 4.81
171 172 4.789075 TGGCTACCGCGCGTCTTC 62.789 66.667 29.95 14.48 36.88 2.87
172 173 4.367023 TTGGCTACCGCGCGTCTT 62.367 61.111 29.95 14.98 36.88 3.01
178 179 2.108344 AAAACACGTTGGCTACCGCG 62.108 55.000 0.00 0.00 36.88 6.46
179 180 0.029700 AAAAACACGTTGGCTACCGC 59.970 50.000 0.00 0.00 0.00 5.68
196 197 3.810941 GTCATCACAGGTACCGACAAAAA 59.189 43.478 6.18 0.00 0.00 1.94
197 198 3.395639 GTCATCACAGGTACCGACAAAA 58.604 45.455 6.18 0.00 0.00 2.44
198 199 2.608506 CGTCATCACAGGTACCGACAAA 60.609 50.000 6.18 0.00 0.00 2.83
199 200 1.068125 CGTCATCACAGGTACCGACAA 60.068 52.381 6.18 0.00 0.00 3.18
200 201 0.524414 CGTCATCACAGGTACCGACA 59.476 55.000 6.18 0.00 0.00 4.35
201 202 0.524862 ACGTCATCACAGGTACCGAC 59.475 55.000 6.18 5.79 0.00 4.79
202 203 0.524414 CACGTCATCACAGGTACCGA 59.476 55.000 6.18 0.00 0.00 4.69
203 204 0.457853 CCACGTCATCACAGGTACCG 60.458 60.000 6.18 4.16 0.00 4.02
204 205 0.892755 TCCACGTCATCACAGGTACC 59.107 55.000 2.73 2.73 0.00 3.34
205 206 2.961526 ATCCACGTCATCACAGGTAC 57.038 50.000 0.00 0.00 0.00 3.34
206 207 2.361119 GCTATCCACGTCATCACAGGTA 59.639 50.000 0.00 0.00 0.00 3.08
207 208 1.137086 GCTATCCACGTCATCACAGGT 59.863 52.381 0.00 0.00 0.00 4.00
208 209 1.136891 TGCTATCCACGTCATCACAGG 59.863 52.381 0.00 0.00 0.00 4.00
209 210 2.099756 TCTGCTATCCACGTCATCACAG 59.900 50.000 0.00 0.00 0.00 3.66
210 211 2.099405 TCTGCTATCCACGTCATCACA 58.901 47.619 0.00 0.00 0.00 3.58
211 212 2.871182 TCTGCTATCCACGTCATCAC 57.129 50.000 0.00 0.00 0.00 3.06
212 213 2.101415 CCTTCTGCTATCCACGTCATCA 59.899 50.000 0.00 0.00 0.00 3.07
213 214 2.362397 TCCTTCTGCTATCCACGTCATC 59.638 50.000 0.00 0.00 0.00 2.92
214 215 2.363680 CTCCTTCTGCTATCCACGTCAT 59.636 50.000 0.00 0.00 0.00 3.06
215 216 1.751351 CTCCTTCTGCTATCCACGTCA 59.249 52.381 0.00 0.00 0.00 4.35
216 217 1.067821 CCTCCTTCTGCTATCCACGTC 59.932 57.143 0.00 0.00 0.00 4.34
217 218 1.115467 CCTCCTTCTGCTATCCACGT 58.885 55.000 0.00 0.00 0.00 4.49
218 219 0.249657 GCCTCCTTCTGCTATCCACG 60.250 60.000 0.00 0.00 0.00 4.94
219 220 0.249657 CGCCTCCTTCTGCTATCCAC 60.250 60.000 0.00 0.00 0.00 4.02
220 221 2.032860 GCGCCTCCTTCTGCTATCCA 62.033 60.000 0.00 0.00 0.00 3.41
221 222 1.301322 GCGCCTCCTTCTGCTATCC 60.301 63.158 0.00 0.00 0.00 2.59
222 223 1.301322 GGCGCCTCCTTCTGCTATC 60.301 63.158 22.15 0.00 0.00 2.08
223 224 2.812619 GGGCGCCTCCTTCTGCTAT 61.813 63.158 28.56 0.00 34.39 2.97
224 225 3.470888 GGGCGCCTCCTTCTGCTA 61.471 66.667 28.56 0.00 34.39 3.49
226 227 4.496336 ATGGGCGCCTCCTTCTGC 62.496 66.667 28.56 7.32 34.39 4.26
227 228 2.515523 CATGGGCGCCTCCTTCTG 60.516 66.667 28.56 10.87 34.39 3.02
228 229 4.496336 GCATGGGCGCCTCCTTCT 62.496 66.667 28.56 1.52 34.39 2.85
238 239 0.882927 TTAATAGTCGCGGCATGGGC 60.883 55.000 15.58 0.00 40.13 5.36
239 240 1.464608 CATTAATAGTCGCGGCATGGG 59.535 52.381 15.58 0.00 0.00 4.00
240 241 1.464608 CCATTAATAGTCGCGGCATGG 59.535 52.381 15.58 13.40 0.00 3.66
241 242 1.464608 CCCATTAATAGTCGCGGCATG 59.535 52.381 15.58 7.30 0.00 4.06
242 243 1.071699 ACCCATTAATAGTCGCGGCAT 59.928 47.619 15.58 0.89 0.00 4.40
243 244 0.466543 ACCCATTAATAGTCGCGGCA 59.533 50.000 15.58 0.00 0.00 5.69
244 245 1.589803 AACCCATTAATAGTCGCGGC 58.410 50.000 0.21 0.21 0.00 6.53
245 246 5.934935 ATTAAACCCATTAATAGTCGCGG 57.065 39.130 6.13 0.00 41.38 6.46
246 247 5.623673 GCAATTAAACCCATTAATAGTCGCG 59.376 40.000 0.00 0.00 42.15 5.87
247 248 5.918576 GGCAATTAAACCCATTAATAGTCGC 59.081 40.000 0.00 0.00 42.15 5.19
248 249 7.033530 TGGCAATTAAACCCATTAATAGTCG 57.966 36.000 0.00 0.00 42.15 4.18
249 250 9.830975 AATTGGCAATTAAACCCATTAATAGTC 57.169 29.630 23.23 0.00 42.15 2.59
250 251 9.612066 CAATTGGCAATTAAACCCATTAATAGT 57.388 29.630 23.93 0.00 42.15 2.12
251 252 8.558700 GCAATTGGCAATTAAACCCATTAATAG 58.441 33.333 23.93 8.62 42.15 1.73
252 253 8.443953 GCAATTGGCAATTAAACCCATTAATA 57.556 30.769 23.93 0.00 42.15 0.98
253 254 7.332213 GCAATTGGCAATTAAACCCATTAAT 57.668 32.000 23.93 0.00 44.30 1.40
254 255 6.749923 GCAATTGGCAATTAAACCCATTAA 57.250 33.333 23.93 0.00 43.97 1.40
269 270 3.076916 GGGAGTGGGGCAATTGGC 61.077 66.667 23.06 23.06 43.74 4.52
270 271 0.835543 TTTGGGAGTGGGGCAATTGG 60.836 55.000 7.72 0.00 0.00 3.16
271 272 1.278537 ATTTGGGAGTGGGGCAATTG 58.721 50.000 0.00 0.00 0.00 2.32
272 273 2.043307 AATTTGGGAGTGGGGCAATT 57.957 45.000 0.00 0.00 0.00 2.32
273 274 2.044353 AGTAATTTGGGAGTGGGGCAAT 59.956 45.455 0.00 0.00 0.00 3.56
274 275 1.431243 AGTAATTTGGGAGTGGGGCAA 59.569 47.619 0.00 0.00 0.00 4.52
275 276 1.080638 AGTAATTTGGGAGTGGGGCA 58.919 50.000 0.00 0.00 0.00 5.36
276 277 2.241430 ACTAGTAATTTGGGAGTGGGGC 59.759 50.000 0.00 0.00 0.00 5.80
277 278 3.886123 CACTAGTAATTTGGGAGTGGGG 58.114 50.000 0.00 0.00 35.05 4.96
280 281 5.523916 CGAATCCACTAGTAATTTGGGAGTG 59.476 44.000 2.71 0.00 37.78 3.51
281 282 5.424252 TCGAATCCACTAGTAATTTGGGAGT 59.576 40.000 13.59 7.25 0.00 3.85
282 283 5.914033 TCGAATCCACTAGTAATTTGGGAG 58.086 41.667 13.59 0.00 0.00 4.30
283 284 5.943349 TCGAATCCACTAGTAATTTGGGA 57.057 39.130 13.59 8.19 0.00 4.37
284 285 6.369065 GCTATCGAATCCACTAGTAATTTGGG 59.631 42.308 13.59 3.71 0.00 4.12
285 286 6.929049 TGCTATCGAATCCACTAGTAATTTGG 59.071 38.462 13.59 4.37 0.00 3.28
286 287 7.438160 TGTGCTATCGAATCCACTAGTAATTTG 59.562 37.037 0.00 3.26 0.00 2.32
287 288 7.497595 TGTGCTATCGAATCCACTAGTAATTT 58.502 34.615 0.00 0.00 0.00 1.82
288 289 7.050970 TGTGCTATCGAATCCACTAGTAATT 57.949 36.000 0.00 0.00 0.00 1.40
289 290 6.650427 TGTGCTATCGAATCCACTAGTAAT 57.350 37.500 0.00 0.00 0.00 1.89
290 291 6.650427 ATGTGCTATCGAATCCACTAGTAA 57.350 37.500 0.00 0.00 0.00 2.24
291 292 6.650427 AATGTGCTATCGAATCCACTAGTA 57.350 37.500 0.00 0.00 0.00 1.82
292 293 5.537300 AATGTGCTATCGAATCCACTAGT 57.463 39.130 12.04 0.00 0.00 2.57
293 294 5.574830 GCTAATGTGCTATCGAATCCACTAG 59.425 44.000 12.04 8.44 0.00 2.57
294 295 5.010617 TGCTAATGTGCTATCGAATCCACTA 59.989 40.000 12.04 2.57 0.00 2.74
295 296 4.202253 TGCTAATGTGCTATCGAATCCACT 60.202 41.667 12.04 0.00 0.00 4.00
296 297 4.058124 TGCTAATGTGCTATCGAATCCAC 58.942 43.478 0.00 0.00 0.00 4.02
297 298 4.335400 TGCTAATGTGCTATCGAATCCA 57.665 40.909 0.00 0.00 0.00 3.41
298 299 5.869344 TGTATGCTAATGTGCTATCGAATCC 59.131 40.000 0.00 0.00 0.00 3.01
299 300 6.951256 TGTATGCTAATGTGCTATCGAATC 57.049 37.500 0.00 0.00 0.00 2.52
300 301 7.912056 AATGTATGCTAATGTGCTATCGAAT 57.088 32.000 0.00 0.00 0.00 3.34
301 302 8.708742 GTTAATGTATGCTAATGTGCTATCGAA 58.291 33.333 0.00 0.00 0.00 3.71
302 303 7.061789 CGTTAATGTATGCTAATGTGCTATCGA 59.938 37.037 0.00 0.00 0.00 3.59
303 304 7.166824 CGTTAATGTATGCTAATGTGCTATCG 58.833 38.462 0.00 0.00 0.00 2.92
304 305 7.330946 TCCGTTAATGTATGCTAATGTGCTATC 59.669 37.037 0.00 0.00 0.00 2.08
305 306 7.158697 TCCGTTAATGTATGCTAATGTGCTAT 58.841 34.615 0.00 0.00 0.00 2.97
306 307 6.517605 TCCGTTAATGTATGCTAATGTGCTA 58.482 36.000 0.00 0.00 0.00 3.49
307 308 5.364778 TCCGTTAATGTATGCTAATGTGCT 58.635 37.500 0.00 0.00 0.00 4.40
308 309 5.666969 TCCGTTAATGTATGCTAATGTGC 57.333 39.130 0.00 0.00 0.00 4.57
309 310 7.010697 TGTTCCGTTAATGTATGCTAATGTG 57.989 36.000 0.00 0.00 0.00 3.21
310 311 7.282224 ACATGTTCCGTTAATGTATGCTAATGT 59.718 33.333 0.00 0.00 32.86 2.71
311 312 7.639039 ACATGTTCCGTTAATGTATGCTAATG 58.361 34.615 0.00 0.00 32.86 1.90
312 313 7.801716 ACATGTTCCGTTAATGTATGCTAAT 57.198 32.000 0.00 0.00 32.86 1.73
313 314 7.618502 AACATGTTCCGTTAATGTATGCTAA 57.381 32.000 4.92 0.00 33.48 3.09
314 315 7.201661 GGAAACATGTTCCGTTAATGTATGCTA 60.202 37.037 12.39 0.00 33.48 3.49
315 316 6.404293 GGAAACATGTTCCGTTAATGTATGCT 60.404 38.462 12.39 0.00 33.48 3.79
316 317 5.741982 GGAAACATGTTCCGTTAATGTATGC 59.258 40.000 12.39 0.00 33.48 3.14
317 318 6.094881 AGGGAAACATGTTCCGTTAATGTATG 59.905 38.462 12.39 0.00 39.46 2.39
318 319 6.184789 AGGGAAACATGTTCCGTTAATGTAT 58.815 36.000 12.39 0.00 39.46 2.29
319 320 5.562635 AGGGAAACATGTTCCGTTAATGTA 58.437 37.500 12.39 0.00 39.46 2.29
320 321 4.403734 AGGGAAACATGTTCCGTTAATGT 58.596 39.130 12.39 0.00 39.46 2.71
321 322 5.385509 AAGGGAAACATGTTCCGTTAATG 57.614 39.130 22.36 0.00 42.73 1.90
322 323 7.543756 CAATAAGGGAAACATGTTCCGTTAAT 58.456 34.615 27.05 21.75 45.91 1.40
323 324 6.570764 GCAATAAGGGAAACATGTTCCGTTAA 60.571 38.462 27.05 18.46 45.91 2.01
324 325 5.106078 GCAATAAGGGAAACATGTTCCGTTA 60.106 40.000 26.31 26.31 46.45 3.18
325 326 4.321675 GCAATAAGGGAAACATGTTCCGTT 60.322 41.667 24.77 24.77 45.36 4.44
326 327 3.192633 GCAATAAGGGAAACATGTTCCGT 59.807 43.478 12.39 12.92 39.46 4.69
327 328 3.428862 GGCAATAAGGGAAACATGTTCCG 60.429 47.826 12.39 3.01 39.46 4.30
328 329 3.513515 TGGCAATAAGGGAAACATGTTCC 59.486 43.478 12.39 14.01 37.86 3.62
329 330 4.799564 TGGCAATAAGGGAAACATGTTC 57.200 40.909 12.39 5.57 0.00 3.18
330 331 5.760484 ATTGGCAATAAGGGAAACATGTT 57.240 34.783 11.81 4.92 0.00 2.71
331 332 5.490159 CAATTGGCAATAAGGGAAACATGT 58.510 37.500 14.05 0.00 0.00 3.21
332 333 4.877251 CCAATTGGCAATAAGGGAAACATG 59.123 41.667 14.05 3.80 0.00 3.21
333 334 5.101648 CCAATTGGCAATAAGGGAAACAT 57.898 39.130 14.05 0.00 0.00 2.71
334 335 4.550076 CCAATTGGCAATAAGGGAAACA 57.450 40.909 14.05 0.00 0.00 2.83
348 349 5.186797 TGGTAATCTTAAAGTGGCCAATTGG 59.813 40.000 20.84 20.81 38.53 3.16
349 350 6.279513 TGGTAATCTTAAAGTGGCCAATTG 57.720 37.500 20.84 7.34 0.00 2.32
353 354 5.192927 CAGATGGTAATCTTAAAGTGGCCA 58.807 41.667 0.00 0.00 41.43 5.36
413 414 2.370849 ACATTACCCACTTGTCCGACTT 59.629 45.455 0.00 0.00 0.00 3.01
452 453 1.807814 AGATCCGGCTCTACCCAAAT 58.192 50.000 5.89 0.00 33.26 2.32
724 730 4.807039 ATTCCCGTCGTTCGCCCG 62.807 66.667 0.00 0.00 38.35 6.13
920 929 3.055530 CCTGTCACAGCTGATTACTCCTT 60.056 47.826 23.35 0.00 0.00 3.36
921 930 2.499289 CCTGTCACAGCTGATTACTCCT 59.501 50.000 23.35 0.00 0.00 3.69
1382 1394 4.079672 ACTTCCCTCTAGACTTAGCTGCTA 60.080 45.833 5.02 5.02 0.00 3.49
1413 1425 3.429543 TGGAAGTAATGCACGAACGTAAC 59.570 43.478 0.00 0.00 0.00 2.50
1692 1711 6.074648 TGAGGGTTACAAATTTGGTCAAGAT 58.925 36.000 21.74 2.02 0.00 2.40
1967 1987 3.758755 CTGTAGCATATTCAGCTCCCA 57.241 47.619 0.00 0.00 42.32 4.37
1983 2003 0.323302 TGCGTCCTTGGATTGCTGTA 59.677 50.000 14.72 0.00 0.00 2.74
2063 2084 7.934120 GGTCCTTATGAGCTAATTGTTCTACAT 59.066 37.037 0.00 0.00 38.47 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.