Multiple sequence alignment - TraesCS6D01G079000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G079000 chr6D 100.000 3554 0 0 1 3554 44495213 44498766 0.000000e+00 6564.0
1 TraesCS6D01G079000 chr6D 94.624 93 5 0 462 554 385917030 385916938 1.030000e-30 145.0
2 TraesCS6D01G079000 chr6A 95.521 1719 65 8 978 2690 59320405 59322117 0.000000e+00 2737.0
3 TraesCS6D01G079000 chr6A 90.814 381 30 5 92 468 59319651 59320030 4.090000e-139 505.0
4 TraesCS6D01G079000 chr6A 89.488 371 23 6 548 911 59320027 59320388 4.180000e-124 455.0
5 TraesCS6D01G079000 chr6A 94.737 247 12 1 3308 3554 59324046 59324291 2.000000e-102 383.0
6 TraesCS6D01G079000 chr6A 92.737 179 12 1 3106 3284 59323297 59323474 1.270000e-64 257.0
7 TraesCS6D01G079000 chr6A 74.570 582 126 19 1927 2494 205115662 205116235 5.930000e-58 235.0
8 TraesCS6D01G079000 chr6A 94.792 96 3 1 3016 3109 59322929 59323024 7.950000e-32 148.0
9 TraesCS6D01G079000 chr6A 90.741 108 7 2 2719 2823 59322805 59322912 1.330000e-29 141.0
10 TraesCS6D01G079000 chr6B 94.010 1252 47 15 687 1928 113587829 113589062 0.000000e+00 1871.0
11 TraesCS6D01G079000 chr6B 92.049 742 42 8 1927 2651 113589135 113589876 0.000000e+00 1027.0
12 TraesCS6D01G079000 chr6B 92.157 306 15 2 3019 3316 113591259 113591563 1.180000e-114 424.0
13 TraesCS6D01G079000 chr6B 91.701 241 14 3 3314 3554 113591685 113591919 2.650000e-86 329.0
14 TraesCS6D01G079000 chr6B 88.827 179 19 1 78 255 113587062 113587240 5.970000e-53 219.0
15 TraesCS6D01G079000 chr6B 95.604 91 4 0 463 553 35021730 35021820 2.860000e-31 147.0
16 TraesCS6D01G079000 chr6B 92.500 80 5 1 2771 2850 113591179 113591257 2.900000e-21 113.0
17 TraesCS6D01G079000 chr2B 81.874 1473 228 25 1106 2558 7856666 7855213 0.000000e+00 1205.0
18 TraesCS6D01G079000 chr2D 81.743 1446 221 26 1106 2528 2930609 2932034 0.000000e+00 1168.0
19 TraesCS6D01G079000 chr2D 81.013 79 13 2 3407 3483 612530836 612530758 1.070000e-05 62.1
20 TraesCS6D01G079000 chr5A 86.017 944 96 15 997 1928 613578376 613579295 0.000000e+00 979.0
21 TraesCS6D01G079000 chr5A 88.784 633 61 6 1923 2547 613579376 613580006 0.000000e+00 767.0
22 TraesCS6D01G079000 chr5A 76.914 823 157 24 1107 1923 52446972 52447767 1.510000e-118 436.0
23 TraesCS6D01G079000 chr5A 87.429 175 19 3 2847 3018 264755566 264755392 7.780000e-47 198.0
24 TraesCS6D01G079000 chr3D 93.071 534 30 2 1138 1671 319866881 319867407 0.000000e+00 774.0
25 TraesCS6D01G079000 chr3D 93.252 163 10 1 2857 3018 435333206 435333044 4.590000e-59 239.0
26 TraesCS6D01G079000 chr5D 85.265 699 89 6 1104 1795 491407565 491408256 0.000000e+00 708.0
27 TraesCS6D01G079000 chr5D 77.251 822 158 19 1107 1924 63267786 63268582 4.180000e-124 455.0
28 TraesCS6D01G079000 chr5D 90.244 164 15 1 2856 3018 26906501 26906338 2.780000e-51 213.0
29 TraesCS6D01G079000 chr5D 88.372 172 15 4 2853 3020 242368101 242367931 6.020000e-48 202.0
30 TraesCS6D01G079000 chr5D 83.553 152 16 6 1786 1928 491416847 491416998 2.230000e-27 134.0
31 TraesCS6D01G079000 chr5B 83.570 633 93 8 1927 2552 605996378 605997006 1.840000e-162 582.0
32 TraesCS6D01G079000 chr5B 78.547 592 111 10 1943 2526 67332731 67332148 3.350000e-100 375.0
33 TraesCS6D01G079000 chr5B 89.286 168 15 2 2854 3018 247347983 247348150 1.290000e-49 207.0
34 TraesCS6D01G079000 chr7B 88.426 216 21 3 256 468 698502511 698502297 1.270000e-64 257.0
35 TraesCS6D01G079000 chr7B 87.037 216 24 4 256 468 40184409 40184623 1.270000e-59 241.0
36 TraesCS6D01G079000 chr7B 86.977 215 24 3 257 468 110880028 110879815 4.590000e-59 239.0
37 TraesCS6D01G079000 chr7B 88.372 172 17 3 2848 3018 102234486 102234317 1.670000e-48 204.0
38 TraesCS6D01G079000 chr1D 88.018 217 23 3 255 468 461344585 461344801 1.640000e-63 254.0
39 TraesCS6D01G079000 chr1D 80.165 121 21 3 3407 3524 44252578 44252698 1.760000e-13 87.9
40 TraesCS6D01G079000 chr1D 77.869 122 24 3 3407 3525 43828788 43828909 4.920000e-09 73.1
41 TraesCS6D01G079000 chr3B 87.097 217 26 1 254 468 417374179 417373963 9.860000e-61 244.0
42 TraesCS6D01G079000 chr3B 92.025 163 12 1 2857 3018 241272702 241272540 9.930000e-56 228.0
43 TraesCS6D01G079000 chr2A 86.364 220 25 4 253 468 759053139 759053357 5.930000e-58 235.0
44 TraesCS6D01G079000 chr7A 86.449 214 25 4 258 468 219166514 219166726 7.670000e-57 231.0
45 TraesCS6D01G079000 chr7A 96.739 92 3 0 465 556 556151914 556152005 1.710000e-33 154.0
46 TraesCS6D01G079000 chr7A 100.000 34 0 0 2342 2375 108502568 108502535 2.960000e-06 63.9
47 TraesCS6D01G079000 chr1B 86.111 216 26 2 255 468 498976184 498975971 2.760000e-56 230.0
48 TraesCS6D01G079000 chr1B 96.629 89 3 0 464 552 603534846 603534758 7.950000e-32 148.0
49 TraesCS6D01G079000 chr4B 89.091 165 16 2 2857 3020 586319223 586319060 1.670000e-48 204.0
50 TraesCS6D01G079000 chr4D 88.235 170 18 2 2857 3025 326382448 326382616 6.020000e-48 202.0
51 TraesCS6D01G079000 chr4D 94.792 96 3 2 465 559 26481778 26481872 7.950000e-32 148.0
52 TraesCS6D01G079000 chr4D 81.000 100 17 2 3407 3504 207699024 207698925 1.060000e-10 78.7
53 TraesCS6D01G079000 chrUn 94.565 92 5 0 465 556 371558047 371558138 3.700000e-30 143.0
54 TraesCS6D01G079000 chrUn 94.565 92 5 0 465 556 371616854 371616945 3.700000e-30 143.0
55 TraesCS6D01G079000 chr1A 93.617 94 6 0 465 558 69995971 69995878 1.330000e-29 141.0
56 TraesCS6D01G079000 chr1A 78.814 118 22 3 3407 3521 43386761 43386644 3.800000e-10 76.8
57 TraesCS6D01G079000 chr7D 91.089 101 8 1 463 562 150834909 150834809 6.190000e-28 135.0
58 TraesCS6D01G079000 chr7D 92.500 40 3 0 2336 2375 104190009 104190048 1.380000e-04 58.4
59 TraesCS6D01G079000 chr4A 81.013 79 13 2 3407 3483 563255982 563255904 1.070000e-05 62.1
60 TraesCS6D01G079000 chr4A 81.013 79 13 2 3407 3483 563295651 563295573 1.070000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G079000 chr6D 44495213 44498766 3553 False 6564.000000 6564 100.0000 1 3554 1 chr6D.!!$F1 3553
1 TraesCS6D01G079000 chr6A 59319651 59324291 4640 False 660.857143 2737 92.6900 92 3554 7 chr6A.!!$F2 3462
2 TraesCS6D01G079000 chr6A 205115662 205116235 573 False 235.000000 235 74.5700 1927 2494 1 chr6A.!!$F1 567
3 TraesCS6D01G079000 chr6B 113587062 113591919 4857 False 663.833333 1871 91.8740 78 3554 6 chr6B.!!$F2 3476
4 TraesCS6D01G079000 chr2B 7855213 7856666 1453 True 1205.000000 1205 81.8740 1106 2558 1 chr2B.!!$R1 1452
5 TraesCS6D01G079000 chr2D 2930609 2932034 1425 False 1168.000000 1168 81.7430 1106 2528 1 chr2D.!!$F1 1422
6 TraesCS6D01G079000 chr5A 613578376 613580006 1630 False 873.000000 979 87.4005 997 2547 2 chr5A.!!$F2 1550
7 TraesCS6D01G079000 chr5A 52446972 52447767 795 False 436.000000 436 76.9140 1107 1923 1 chr5A.!!$F1 816
8 TraesCS6D01G079000 chr3D 319866881 319867407 526 False 774.000000 774 93.0710 1138 1671 1 chr3D.!!$F1 533
9 TraesCS6D01G079000 chr5D 491407565 491408256 691 False 708.000000 708 85.2650 1104 1795 1 chr5D.!!$F2 691
10 TraesCS6D01G079000 chr5D 63267786 63268582 796 False 455.000000 455 77.2510 1107 1924 1 chr5D.!!$F1 817
11 TraesCS6D01G079000 chr5B 605996378 605997006 628 False 582.000000 582 83.5700 1927 2552 1 chr5B.!!$F2 625
12 TraesCS6D01G079000 chr5B 67332148 67332731 583 True 375.000000 375 78.5470 1943 2526 1 chr5B.!!$R1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.036010 GGCCCGCATCATACTAGCAT 60.036 55.0 0.0 0.0 0.0 3.79 F
864 1351 0.106708 CCACCCACACGCTGCTATAT 59.893 55.0 0.0 0.0 0.0 0.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 2299 1.631072 GTCGCGGATGATGTCGTTG 59.369 57.895 6.13 0.0 0.0 4.1 R
2854 5358 0.250858 TGACGAACGGAGGGAGTACA 60.251 55.000 0.00 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.254546 TTCACTGACATGTGTGACCC 57.745 50.000 16.29 0.00 42.06 4.46
23 24 1.127343 TCACTGACATGTGTGACCCA 58.873 50.000 13.45 0.00 38.15 4.51
24 25 1.488393 TCACTGACATGTGTGACCCAA 59.512 47.619 13.45 0.00 38.15 4.12
25 26 1.603802 CACTGACATGTGTGACCCAAC 59.396 52.381 1.15 0.00 36.38 3.77
26 27 1.211703 ACTGACATGTGTGACCCAACA 59.788 47.619 1.15 0.00 0.00 3.33
27 28 1.875514 CTGACATGTGTGACCCAACAG 59.124 52.381 1.15 0.00 0.00 3.16
28 29 1.211703 TGACATGTGTGACCCAACAGT 59.788 47.619 1.15 0.00 0.00 3.55
29 30 1.873591 GACATGTGTGACCCAACAGTC 59.126 52.381 1.15 0.00 37.28 3.51
30 31 1.211703 ACATGTGTGACCCAACAGTCA 59.788 47.619 0.00 0.00 44.38 3.41
34 35 3.654021 TGACCCAACAGTCAGCCA 58.346 55.556 0.00 0.00 41.78 4.75
35 36 1.451504 TGACCCAACAGTCAGCCAG 59.548 57.895 0.00 0.00 41.78 4.85
36 37 1.968540 GACCCAACAGTCAGCCAGC 60.969 63.158 0.00 0.00 36.73 4.85
37 38 2.403132 GACCCAACAGTCAGCCAGCT 62.403 60.000 0.00 0.00 36.73 4.24
38 39 1.228367 CCCAACAGTCAGCCAGCTT 60.228 57.895 0.00 0.00 0.00 3.74
39 40 1.521450 CCCAACAGTCAGCCAGCTTG 61.521 60.000 0.00 0.00 0.00 4.01
40 41 0.820891 CCAACAGTCAGCCAGCTTGT 60.821 55.000 0.00 0.00 0.00 3.16
41 42 0.590195 CAACAGTCAGCCAGCTTGTC 59.410 55.000 0.00 0.00 0.00 3.18
42 43 0.536006 AACAGTCAGCCAGCTTGTCC 60.536 55.000 0.00 0.00 0.00 4.02
43 44 1.673665 CAGTCAGCCAGCTTGTCCC 60.674 63.158 0.00 0.00 0.00 4.46
44 45 2.743928 GTCAGCCAGCTTGTCCCG 60.744 66.667 0.00 0.00 0.00 5.14
45 46 4.704833 TCAGCCAGCTTGTCCCGC 62.705 66.667 0.00 0.00 0.00 6.13
50 51 3.726517 CAGCTTGTCCCGCCGTTG 61.727 66.667 0.00 0.00 0.00 4.10
53 54 3.283684 CTTGTCCCGCCGTTGCAA 61.284 61.111 0.00 0.00 37.32 4.08
54 55 3.254014 CTTGTCCCGCCGTTGCAAG 62.254 63.158 0.00 0.00 37.32 4.01
72 73 3.056458 CGGGCCCGCATCATACTA 58.944 61.111 34.96 0.00 0.00 1.82
73 74 1.079819 CGGGCCCGCATCATACTAG 60.080 63.158 34.96 0.00 0.00 2.57
74 75 1.376037 GGGCCCGCATCATACTAGC 60.376 63.158 5.69 0.00 0.00 3.42
75 76 1.371183 GGCCCGCATCATACTAGCA 59.629 57.895 0.00 0.00 0.00 3.49
76 77 0.036010 GGCCCGCATCATACTAGCAT 60.036 55.000 0.00 0.00 0.00 3.79
79 80 1.338484 CCCGCATCATACTAGCATGCT 60.338 52.381 25.99 25.99 40.73 3.79
313 316 6.743575 AATAAAGAGTCAGTTACATGCCAC 57.256 37.500 0.00 0.00 0.00 5.01
319 322 4.575885 AGTCAGTTACATGCCACGTAAAT 58.424 39.130 0.00 0.00 30.96 1.40
325 328 6.145534 CAGTTACATGCCACGTAAATATCGAT 59.854 38.462 2.16 2.16 30.96 3.59
326 329 6.704493 AGTTACATGCCACGTAAATATCGATT 59.296 34.615 1.71 0.00 30.96 3.34
383 387 1.933021 ACCAACGTATGTCCCTCTCA 58.067 50.000 0.00 0.00 0.00 3.27
391 397 5.721232 ACGTATGTCCCTCTCAACTAAAAG 58.279 41.667 0.00 0.00 0.00 2.27
393 399 6.014840 ACGTATGTCCCTCTCAACTAAAAGAA 60.015 38.462 0.00 0.00 0.00 2.52
396 402 6.494666 TGTCCCTCTCAACTAAAAGAAGAA 57.505 37.500 0.00 0.00 0.00 2.52
400 406 7.445707 GTCCCTCTCAACTAAAAGAAGAAACAT 59.554 37.037 0.00 0.00 0.00 2.71
413 419 9.525826 AAAAGAAGAAACATATCACCTCTTCAT 57.474 29.630 11.50 0.00 42.85 2.57
444 450 2.301505 CGGCTCCATCGCTAAACAG 58.698 57.895 0.00 0.00 0.00 3.16
454 460 1.724623 TCGCTAAACAGCAGCTTTACG 59.275 47.619 0.00 0.00 36.86 3.18
464 470 2.565834 AGCAGCTTTACGGACCTCTAAA 59.434 45.455 0.00 0.00 0.00 1.85
465 471 2.930682 GCAGCTTTACGGACCTCTAAAG 59.069 50.000 11.63 11.63 34.39 1.85
466 472 3.616802 GCAGCTTTACGGACCTCTAAAGT 60.617 47.826 15.13 0.00 33.97 2.66
467 473 4.381292 GCAGCTTTACGGACCTCTAAAGTA 60.381 45.833 15.13 0.00 33.97 2.24
468 474 5.100943 CAGCTTTACGGACCTCTAAAGTAC 58.899 45.833 15.13 0.00 33.97 2.73
469 475 5.015515 AGCTTTACGGACCTCTAAAGTACT 58.984 41.667 15.13 0.00 33.97 2.73
470 476 5.125257 AGCTTTACGGACCTCTAAAGTACTC 59.875 44.000 15.13 4.40 33.97 2.59
471 477 5.678361 GCTTTACGGACCTCTAAAGTACTCC 60.678 48.000 15.13 0.00 33.97 3.85
472 478 2.732763 ACGGACCTCTAAAGTACTCCC 58.267 52.381 0.00 0.00 0.00 4.30
473 479 2.311243 ACGGACCTCTAAAGTACTCCCT 59.689 50.000 0.00 0.00 0.00 4.20
474 480 2.950975 CGGACCTCTAAAGTACTCCCTC 59.049 54.545 0.00 0.00 0.00 4.30
475 481 3.371810 CGGACCTCTAAAGTACTCCCTCT 60.372 52.174 0.00 0.00 0.00 3.69
476 482 3.955551 GGACCTCTAAAGTACTCCCTCTG 59.044 52.174 0.00 0.00 0.00 3.35
477 483 4.570292 GGACCTCTAAAGTACTCCCTCTGT 60.570 50.000 0.00 0.00 0.00 3.41
478 484 5.339861 GGACCTCTAAAGTACTCCCTCTGTA 60.340 48.000 0.00 0.00 0.00 2.74
479 485 6.150034 ACCTCTAAAGTACTCCCTCTGTAA 57.850 41.667 0.00 0.00 0.00 2.41
480 486 6.559429 ACCTCTAAAGTACTCCCTCTGTAAA 58.441 40.000 0.00 0.00 0.00 2.01
481 487 6.436847 ACCTCTAAAGTACTCCCTCTGTAAAC 59.563 42.308 0.00 0.00 0.00 2.01
482 488 6.664384 CCTCTAAAGTACTCCCTCTGTAAACT 59.336 42.308 0.00 0.00 0.00 2.66
483 489 7.833183 CCTCTAAAGTACTCCCTCTGTAAACTA 59.167 40.741 0.00 0.00 0.00 2.24
484 490 9.240734 CTCTAAAGTACTCCCTCTGTAAACTAA 57.759 37.037 0.00 0.00 0.00 2.24
485 491 9.765295 TCTAAAGTACTCCCTCTGTAAACTAAT 57.235 33.333 0.00 0.00 0.00 1.73
493 499 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
494 500 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
495 501 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
496 502 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
497 503 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
630 636 8.436200 GCACTACTTTTCTCTGTATTGTACAAG 58.564 37.037 14.65 0.00 38.38 3.16
716 1196 6.040616 ACCTAGAAGACTGAGAAACGAAAAGA 59.959 38.462 0.00 0.00 0.00 2.52
762 1245 0.878523 CCAAACGACGGCTGACTGAA 60.879 55.000 0.00 0.00 0.00 3.02
864 1351 0.106708 CCACCCACACGCTGCTATAT 59.893 55.000 0.00 0.00 0.00 0.86
865 1352 1.343142 CCACCCACACGCTGCTATATA 59.657 52.381 0.00 0.00 0.00 0.86
866 1353 2.610479 CCACCCACACGCTGCTATATAG 60.610 54.545 5.30 5.30 0.00 1.31
867 1354 2.035961 CACCCACACGCTGCTATATAGT 59.964 50.000 11.38 0.00 0.00 2.12
868 1355 3.254903 CACCCACACGCTGCTATATAGTA 59.745 47.826 11.38 6.00 0.00 1.82
869 1356 3.506455 ACCCACACGCTGCTATATAGTAG 59.494 47.826 20.16 20.16 38.80 2.57
870 1357 3.506455 CCCACACGCTGCTATATAGTAGT 59.494 47.826 23.65 7.99 38.17 2.73
878 1365 6.071560 ACGCTGCTATATAGTAGTATTTGCCA 60.072 38.462 23.65 4.92 38.17 4.92
883 1374 8.027189 TGCTATATAGTAGTATTTGCCACGAAG 58.973 37.037 11.38 0.00 0.00 3.79
903 1394 1.757574 CACACTTGTTTCACCATGCG 58.242 50.000 0.00 0.00 0.00 4.73
911 1402 1.069227 GTTTCACCATGCGACAACCTC 60.069 52.381 0.00 0.00 0.00 3.85
930 1425 0.179089 CATCTGCCTTGCTAGCTCGT 60.179 55.000 17.23 0.00 0.00 4.18
945 1440 3.983741 AGCTCGTAGCATTCCATACTTC 58.016 45.455 9.09 0.00 45.56 3.01
963 1458 1.300620 CGGAAACAGCCACTGACGA 60.301 57.895 0.78 0.00 35.18 4.20
964 1459 0.670546 CGGAAACAGCCACTGACGAT 60.671 55.000 0.78 0.00 35.18 3.73
967 1462 2.000447 GAAACAGCCACTGACGATACC 59.000 52.381 0.78 0.00 35.18 2.73
968 1463 0.108804 AACAGCCACTGACGATACCG 60.109 55.000 0.78 0.00 37.05 4.02
980 1475 0.940126 CGATACCGTGCTACGTACCT 59.060 55.000 0.00 0.00 40.58 3.08
1048 1544 2.537143 GTTTCCTGGTCTCCCTAGTCA 58.463 52.381 0.00 0.00 0.00 3.41
1051 1547 1.218196 TCCTGGTCTCCCTAGTCATCC 59.782 57.143 0.00 0.00 0.00 3.51
1113 1618 1.078426 GCCAGGAAAGAAGCGGCTA 60.078 57.895 1.35 0.00 39.73 3.93
1571 2079 4.933064 CGTCGAGATCGGCCAGGC 62.933 72.222 1.26 1.26 41.58 4.85
1785 2299 3.545481 CACGTGCGCGACATCCTC 61.545 66.667 28.73 0.00 42.00 3.71
2199 2901 2.521224 GGCTACGAGGTCCCCGAT 60.521 66.667 0.00 0.00 0.00 4.18
2548 3257 0.370273 GCAACGTATTCCACTCGCAG 59.630 55.000 0.00 0.00 0.00 5.18
2559 3268 4.670896 TCCACTCGCAGATTAATGATCA 57.329 40.909 0.00 0.00 37.22 2.92
2561 3270 5.614308 TCCACTCGCAGATTAATGATCAAT 58.386 37.500 0.00 0.00 37.22 2.57
2564 3273 5.699915 CACTCGCAGATTAATGATCAATCCT 59.300 40.000 0.00 0.00 37.22 3.24
2568 3277 5.106396 CGCAGATTAATGATCAATCCTTCCC 60.106 44.000 0.00 0.00 37.22 3.97
2569 3278 5.771666 GCAGATTAATGATCAATCCTTCCCA 59.228 40.000 0.00 0.00 37.22 4.37
2570 3279 6.436532 GCAGATTAATGATCAATCCTTCCCAT 59.563 38.462 0.00 0.00 37.22 4.00
2571 3280 7.362747 GCAGATTAATGATCAATCCTTCCCATC 60.363 40.741 0.00 0.00 37.22 3.51
2572 3281 7.668469 CAGATTAATGATCAATCCTTCCCATCA 59.332 37.037 0.00 0.00 37.22 3.07
2573 3282 7.668886 AGATTAATGATCAATCCTTCCCATCAC 59.331 37.037 0.00 0.00 37.22 3.06
2596 3305 3.173953 TCCACTTCTTCCGTTAGGGTA 57.826 47.619 0.00 0.00 38.33 3.69
2767 4279 6.732531 AACGGGTTCTTTAGCTGTAATTAC 57.267 37.500 8.75 8.75 42.89 1.89
2784 5288 7.794041 TGTAATTACGTACTCCACCCAAATAT 58.206 34.615 10.92 0.00 0.00 1.28
2833 5337 3.126831 CGATCTATCAGAAGGCCACAAC 58.873 50.000 5.01 0.00 0.00 3.32
2850 5354 2.041620 ACAACCTTATGCAGACCCATGT 59.958 45.455 0.00 0.00 0.00 3.21
2851 5355 3.265737 ACAACCTTATGCAGACCCATGTA 59.734 43.478 0.00 0.00 0.00 2.29
2852 5356 4.079787 ACAACCTTATGCAGACCCATGTAT 60.080 41.667 0.00 0.00 0.00 2.29
2853 5357 5.131977 ACAACCTTATGCAGACCCATGTATA 59.868 40.000 0.00 0.00 0.00 1.47
2854 5358 6.183361 ACAACCTTATGCAGACCCATGTATAT 60.183 38.462 0.00 0.00 29.51 0.86
2855 5359 5.809001 ACCTTATGCAGACCCATGTATATG 58.191 41.667 0.00 0.00 29.51 1.78
2856 5360 5.310594 ACCTTATGCAGACCCATGTATATGT 59.689 40.000 0.00 0.00 29.51 2.29
2857 5361 6.500400 ACCTTATGCAGACCCATGTATATGTA 59.500 38.462 0.00 0.00 29.51 2.29
2858 5362 6.818644 CCTTATGCAGACCCATGTATATGTAC 59.181 42.308 0.00 0.00 29.51 2.90
2859 5363 7.310671 CCTTATGCAGACCCATGTATATGTACT 60.311 40.741 1.08 0.00 29.51 2.73
2860 5364 5.468540 TGCAGACCCATGTATATGTACTC 57.531 43.478 1.08 0.00 32.21 2.59
2861 5365 4.283467 TGCAGACCCATGTATATGTACTCC 59.717 45.833 1.08 0.00 32.21 3.85
2862 5366 4.322801 GCAGACCCATGTATATGTACTCCC 60.323 50.000 1.08 0.00 32.21 4.30
2863 5367 5.087323 CAGACCCATGTATATGTACTCCCT 58.913 45.833 1.08 0.00 32.21 4.20
2864 5368 5.186021 CAGACCCATGTATATGTACTCCCTC 59.814 48.000 1.08 0.00 32.21 4.30
2865 5369 4.426704 ACCCATGTATATGTACTCCCTCC 58.573 47.826 1.08 0.00 32.21 4.30
2866 5370 3.447586 CCCATGTATATGTACTCCCTCCG 59.552 52.174 1.08 0.00 32.21 4.63
2867 5371 4.087182 CCATGTATATGTACTCCCTCCGT 58.913 47.826 1.08 0.00 32.21 4.69
2868 5372 4.527038 CCATGTATATGTACTCCCTCCGTT 59.473 45.833 1.08 0.00 32.21 4.44
2869 5373 5.336531 CCATGTATATGTACTCCCTCCGTTC 60.337 48.000 1.08 0.00 32.21 3.95
2870 5374 3.817084 TGTATATGTACTCCCTCCGTTCG 59.183 47.826 1.08 0.00 0.00 3.95
2871 5375 2.425143 TATGTACTCCCTCCGTTCGT 57.575 50.000 0.00 0.00 0.00 3.85
2872 5376 1.101331 ATGTACTCCCTCCGTTCGTC 58.899 55.000 0.00 0.00 0.00 4.20
2873 5377 0.250858 TGTACTCCCTCCGTTCGTCA 60.251 55.000 0.00 0.00 0.00 4.35
2874 5378 1.101331 GTACTCCCTCCGTTCGTCAT 58.899 55.000 0.00 0.00 0.00 3.06
2875 5379 2.292267 GTACTCCCTCCGTTCGTCATA 58.708 52.381 0.00 0.00 0.00 2.15
2876 5380 1.101331 ACTCCCTCCGTTCGTCATAC 58.899 55.000 0.00 0.00 0.00 2.39
2877 5381 1.100510 CTCCCTCCGTTCGTCATACA 58.899 55.000 0.00 0.00 0.00 2.29
2878 5382 1.475280 CTCCCTCCGTTCGTCATACAA 59.525 52.381 0.00 0.00 0.00 2.41
2879 5383 1.475280 TCCCTCCGTTCGTCATACAAG 59.525 52.381 0.00 0.00 0.00 3.16
2880 5384 1.203994 CCCTCCGTTCGTCATACAAGT 59.796 52.381 0.00 0.00 0.00 3.16
2881 5385 2.527100 CCTCCGTTCGTCATACAAGTC 58.473 52.381 0.00 0.00 0.00 3.01
2882 5386 2.163815 CCTCCGTTCGTCATACAAGTCT 59.836 50.000 0.00 0.00 0.00 3.24
2883 5387 3.367087 CCTCCGTTCGTCATACAAGTCTT 60.367 47.826 0.00 0.00 0.00 3.01
2884 5388 4.235360 CTCCGTTCGTCATACAAGTCTTT 58.765 43.478 0.00 0.00 0.00 2.52
2885 5389 4.232221 TCCGTTCGTCATACAAGTCTTTC 58.768 43.478 0.00 0.00 0.00 2.62
2886 5390 4.022589 TCCGTTCGTCATACAAGTCTTTCT 60.023 41.667 0.00 0.00 0.00 2.52
2887 5391 5.181811 TCCGTTCGTCATACAAGTCTTTCTA 59.818 40.000 0.00 0.00 0.00 2.10
2888 5392 5.512082 CCGTTCGTCATACAAGTCTTTCTAG 59.488 44.000 0.00 0.00 0.00 2.43
2889 5393 6.312487 CGTTCGTCATACAAGTCTTTCTAGA 58.688 40.000 0.00 0.00 0.00 2.43
2890 5394 6.466413 CGTTCGTCATACAAGTCTTTCTAGAG 59.534 42.308 0.00 0.00 0.00 2.43
2891 5395 7.528307 GTTCGTCATACAAGTCTTTCTAGAGA 58.472 38.462 0.00 0.00 0.00 3.10
2892 5396 7.867305 TCGTCATACAAGTCTTTCTAGAGAT 57.133 36.000 0.00 0.00 0.00 2.75
2893 5397 8.282455 TCGTCATACAAGTCTTTCTAGAGATT 57.718 34.615 0.00 0.00 0.00 2.40
2894 5398 8.740906 TCGTCATACAAGTCTTTCTAGAGATTT 58.259 33.333 0.00 0.00 0.00 2.17
2895 5399 9.015577 CGTCATACAAGTCTTTCTAGAGATTTC 57.984 37.037 0.00 0.00 0.00 2.17
2896 5400 9.862371 GTCATACAAGTCTTTCTAGAGATTTCA 57.138 33.333 0.00 0.00 0.00 2.69
2897 5401 9.862371 TCATACAAGTCTTTCTAGAGATTTCAC 57.138 33.333 0.00 0.00 0.00 3.18
2898 5402 9.868277 CATACAAGTCTTTCTAGAGATTTCACT 57.132 33.333 0.00 0.00 0.00 3.41
2901 5405 9.868277 ACAAGTCTTTCTAGAGATTTCACTATG 57.132 33.333 0.00 0.00 0.00 2.23
2905 5409 9.862371 GTCTTTCTAGAGATTTCACTATGAACA 57.138 33.333 0.00 0.00 35.89 3.18
2908 5412 9.996554 TTTCTAGAGATTTCACTATGAACAACA 57.003 29.630 0.00 0.00 35.89 3.33
2912 5416 8.412608 AGAGATTTCACTATGAACAACATACG 57.587 34.615 0.00 0.00 35.89 3.06
2913 5417 7.492669 AGAGATTTCACTATGAACAACATACGG 59.507 37.037 0.00 0.00 35.89 4.02
2914 5418 7.327975 AGATTTCACTATGAACAACATACGGA 58.672 34.615 0.00 0.00 35.89 4.69
2915 5419 7.987458 AGATTTCACTATGAACAACATACGGAT 59.013 33.333 0.00 0.00 35.89 4.18
2916 5420 6.902224 TTCACTATGAACAACATACGGATG 57.098 37.500 5.94 5.94 40.07 3.51
2917 5421 6.403049 TTCACTATGAACAACATACGGATGT 58.597 36.000 7.68 7.68 38.52 3.06
2918 5422 7.102847 TCACTATGAACAACATACGGATGTA 57.897 36.000 15.10 0.00 45.93 2.29
2919 5423 7.722363 TCACTATGAACAACATACGGATGTAT 58.278 34.615 15.10 5.93 45.93 2.29
2920 5424 8.852135 TCACTATGAACAACATACGGATGTATA 58.148 33.333 15.10 6.85 45.93 1.47
2921 5425 9.639601 CACTATGAACAACATACGGATGTATAT 57.360 33.333 15.10 2.50 45.93 0.86
2925 5429 9.856488 ATGAACAACATACGGATGTATATAGAC 57.144 33.333 15.10 3.30 45.93 2.59
2926 5430 8.019094 TGAACAACATACGGATGTATATAGACG 58.981 37.037 15.10 0.00 45.93 4.18
2927 5431 7.444629 ACAACATACGGATGTATATAGACGT 57.555 36.000 15.10 0.00 45.93 4.34
2928 5432 8.552083 ACAACATACGGATGTATATAGACGTA 57.448 34.615 15.10 9.65 45.93 3.57
2929 5433 8.663025 ACAACATACGGATGTATATAGACGTAG 58.337 37.037 15.10 0.00 45.93 3.51
2930 5434 8.663025 CAACATACGGATGTATATAGACGTAGT 58.337 37.037 15.10 0.00 45.93 2.73
2931 5435 8.783833 ACATACGGATGTATATAGACGTAGTT 57.216 34.615 12.79 0.00 43.41 2.24
2932 5436 9.224267 ACATACGGATGTATATAGACGTAGTTT 57.776 33.333 12.79 0.00 43.41 2.66
2948 5452 7.684937 ACGTAGTTTAGAGTGTAGATTCACT 57.315 36.000 0.00 0.00 45.46 3.41
2957 5461 5.220710 AGTGTAGATTCACTCAGTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
2958 5462 5.615289 AGTGTAGATTCACTCAGTTTGCTT 58.385 37.500 0.00 0.00 44.07 3.91
2959 5463 5.698545 AGTGTAGATTCACTCAGTTTGCTTC 59.301 40.000 0.00 0.00 44.07 3.86
2960 5464 4.686091 TGTAGATTCACTCAGTTTGCTTCG 59.314 41.667 0.00 0.00 0.00 3.79
2961 5465 3.733337 AGATTCACTCAGTTTGCTTCGT 58.267 40.909 0.00 0.00 0.00 3.85
2962 5466 4.883083 AGATTCACTCAGTTTGCTTCGTA 58.117 39.130 0.00 0.00 0.00 3.43
2963 5467 5.482908 AGATTCACTCAGTTTGCTTCGTAT 58.517 37.500 0.00 0.00 0.00 3.06
2964 5468 4.990543 TTCACTCAGTTTGCTTCGTATG 57.009 40.909 0.00 0.00 0.00 2.39
2965 5469 3.990092 TCACTCAGTTTGCTTCGTATGT 58.010 40.909 0.00 0.00 0.00 2.29
2966 5470 5.128992 TCACTCAGTTTGCTTCGTATGTA 57.871 39.130 0.00 0.00 0.00 2.29
2967 5471 5.161358 TCACTCAGTTTGCTTCGTATGTAG 58.839 41.667 0.00 0.00 0.00 2.74
2968 5472 4.923871 CACTCAGTTTGCTTCGTATGTAGT 59.076 41.667 0.00 0.00 0.00 2.73
2969 5473 5.061064 CACTCAGTTTGCTTCGTATGTAGTC 59.939 44.000 0.00 0.00 0.00 2.59
2970 5474 5.047943 ACTCAGTTTGCTTCGTATGTAGTCT 60.048 40.000 0.00 0.00 0.00 3.24
2971 5475 5.779922 TCAGTTTGCTTCGTATGTAGTCTT 58.220 37.500 0.00 0.00 0.00 3.01
2972 5476 6.220930 TCAGTTTGCTTCGTATGTAGTCTTT 58.779 36.000 0.00 0.00 0.00 2.52
2973 5477 6.704493 TCAGTTTGCTTCGTATGTAGTCTTTT 59.296 34.615 0.00 0.00 0.00 2.27
2974 5478 7.868922 TCAGTTTGCTTCGTATGTAGTCTTTTA 59.131 33.333 0.00 0.00 0.00 1.52
2975 5479 8.656849 CAGTTTGCTTCGTATGTAGTCTTTTAT 58.343 33.333 0.00 0.00 0.00 1.40
2976 5480 9.216117 AGTTTGCTTCGTATGTAGTCTTTTATT 57.784 29.630 0.00 0.00 0.00 1.40
2977 5481 9.262472 GTTTGCTTCGTATGTAGTCTTTTATTG 57.738 33.333 0.00 0.00 0.00 1.90
2978 5482 7.534085 TGCTTCGTATGTAGTCTTTTATTGG 57.466 36.000 0.00 0.00 0.00 3.16
2979 5483 7.324935 TGCTTCGTATGTAGTCTTTTATTGGA 58.675 34.615 0.00 0.00 0.00 3.53
2980 5484 7.820386 TGCTTCGTATGTAGTCTTTTATTGGAA 59.180 33.333 0.00 0.00 0.00 3.53
2981 5485 8.827677 GCTTCGTATGTAGTCTTTTATTGGAAT 58.172 33.333 0.00 0.00 0.00 3.01
2983 5487 8.882415 TCGTATGTAGTCTTTTATTGGAATCC 57.118 34.615 0.00 0.00 0.00 3.01
2984 5488 7.929785 TCGTATGTAGTCTTTTATTGGAATCCC 59.070 37.037 0.00 0.00 0.00 3.85
2985 5489 7.931948 CGTATGTAGTCTTTTATTGGAATCCCT 59.068 37.037 0.00 0.00 0.00 4.20
3012 5516 6.812879 AAAACTTACATTTAGGAACGGAGG 57.187 37.500 0.00 0.00 0.00 4.30
3013 5517 5.750352 AACTTACATTTAGGAACGGAGGA 57.250 39.130 0.00 0.00 0.00 3.71
3014 5518 5.750352 ACTTACATTTAGGAACGGAGGAA 57.250 39.130 0.00 0.00 0.00 3.36
3105 5611 3.969117 TTCACACAACAGCAAGATCAC 57.031 42.857 0.00 0.00 0.00 3.06
3109 5615 3.501062 CACACAACAGCAAGATCACTGAT 59.499 43.478 14.98 0.00 37.35 2.90
3111 5617 3.079578 ACAACAGCAAGATCACTGATGG 58.920 45.455 18.31 10.14 40.03 3.51
3114 5620 2.039480 ACAGCAAGATCACTGATGGTGT 59.961 45.455 15.03 13.30 46.27 4.16
3130 5911 3.482436 TGGTGTTTTGGCTTACTCGAAT 58.518 40.909 0.00 0.00 0.00 3.34
3185 5966 0.753262 ACTTGTCACTCGAGCAGGTT 59.247 50.000 13.61 0.00 0.00 3.50
3217 6006 0.751277 CAAGGTCCCACACACTTGCA 60.751 55.000 0.00 0.00 34.62 4.08
3239 6028 2.759973 CTCCTGTGCGGCCTCCTA 60.760 66.667 0.00 0.00 0.00 2.94
3298 6401 1.002430 TCTGTGGTCTCCATGAAGTGC 59.998 52.381 0.00 0.00 35.28 4.40
3354 6691 2.054799 ACCAGAGTTTAGCCAAGACCA 58.945 47.619 0.00 0.00 0.00 4.02
3469 6806 5.982516 GTGAGTCTCCTATGAAAGCACATAG 59.017 44.000 14.41 14.41 45.20 2.23
3524 6861 2.854777 GCGAGTGTGTTCTATAGCACAG 59.145 50.000 5.40 3.26 44.89 3.66
3527 6864 5.344066 CGAGTGTGTTCTATAGCACAGATT 58.656 41.667 5.40 1.44 44.89 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.202409 TGGGTCACACATGTCAGTGAATAA 60.202 41.667 17.77 6.37 45.38 1.40
1 2 3.326297 TGGGTCACACATGTCAGTGAATA 59.674 43.478 17.77 7.23 45.38 1.75
2 3 2.106338 TGGGTCACACATGTCAGTGAAT 59.894 45.455 17.77 0.00 45.38 2.57
3 4 1.488393 TGGGTCACACATGTCAGTGAA 59.512 47.619 17.77 3.52 45.38 3.18
4 5 1.127343 TGGGTCACACATGTCAGTGA 58.873 50.000 13.45 13.45 42.05 3.41
5 6 1.603802 GTTGGGTCACACATGTCAGTG 59.396 52.381 9.48 9.48 44.93 3.66
6 7 1.211703 TGTTGGGTCACACATGTCAGT 59.788 47.619 0.00 0.00 0.00 3.41
7 8 1.875514 CTGTTGGGTCACACATGTCAG 59.124 52.381 0.00 0.00 0.00 3.51
8 9 1.211703 ACTGTTGGGTCACACATGTCA 59.788 47.619 0.00 0.00 0.00 3.58
9 10 1.873591 GACTGTTGGGTCACACATGTC 59.126 52.381 0.00 0.00 36.35 3.06
10 11 1.211703 TGACTGTTGGGTCACACATGT 59.788 47.619 0.00 0.00 40.72 3.21
11 12 1.875514 CTGACTGTTGGGTCACACATG 59.124 52.381 0.00 0.00 40.72 3.21
12 13 1.815408 GCTGACTGTTGGGTCACACAT 60.815 52.381 0.00 0.00 40.72 3.21
13 14 0.463654 GCTGACTGTTGGGTCACACA 60.464 55.000 0.00 0.00 40.72 3.72
14 15 1.166531 GGCTGACTGTTGGGTCACAC 61.167 60.000 0.00 0.00 40.72 3.82
15 16 1.148273 GGCTGACTGTTGGGTCACA 59.852 57.895 0.00 0.00 40.72 3.58
16 17 0.886490 CTGGCTGACTGTTGGGTCAC 60.886 60.000 0.00 0.00 40.72 3.67
17 18 1.451504 CTGGCTGACTGTTGGGTCA 59.548 57.895 0.00 0.00 42.96 4.02
18 19 1.968540 GCTGGCTGACTGTTGGGTC 60.969 63.158 0.00 0.00 36.81 4.46
19 20 1.999634 AAGCTGGCTGACTGTTGGGT 62.000 55.000 0.00 0.00 0.00 4.51
20 21 1.228367 AAGCTGGCTGACTGTTGGG 60.228 57.895 0.00 0.00 0.00 4.12
21 22 0.820891 ACAAGCTGGCTGACTGTTGG 60.821 55.000 0.00 0.00 0.00 3.77
22 23 0.590195 GACAAGCTGGCTGACTGTTG 59.410 55.000 0.00 0.00 0.00 3.33
23 24 0.536006 GGACAAGCTGGCTGACTGTT 60.536 55.000 0.00 0.00 0.00 3.16
24 25 1.072159 GGACAAGCTGGCTGACTGT 59.928 57.895 0.00 0.00 0.00 3.55
25 26 1.673665 GGGACAAGCTGGCTGACTG 60.674 63.158 0.00 0.00 0.00 3.51
26 27 2.753029 GGGACAAGCTGGCTGACT 59.247 61.111 0.00 0.00 0.00 3.41
27 28 2.743928 CGGGACAAGCTGGCTGAC 60.744 66.667 0.00 0.00 0.00 3.51
28 29 4.704833 GCGGGACAAGCTGGCTGA 62.705 66.667 0.00 0.00 0.00 4.26
33 34 3.726517 CAACGGCGGGACAAGCTG 61.727 66.667 13.24 0.00 45.86 4.24
36 37 3.254014 CTTGCAACGGCGGGACAAG 62.254 63.158 18.72 18.72 45.35 3.16
37 38 3.283684 CTTGCAACGGCGGGACAA 61.284 61.111 13.24 11.06 45.35 3.18
55 56 1.079819 CTAGTATGATGCGGGCCCG 60.080 63.158 40.26 40.26 43.09 6.13
56 57 1.376037 GCTAGTATGATGCGGGCCC 60.376 63.158 13.57 13.57 0.00 5.80
57 58 0.036010 ATGCTAGTATGATGCGGGCC 60.036 55.000 0.00 0.00 0.00 5.80
58 59 1.081892 CATGCTAGTATGATGCGGGC 58.918 55.000 15.07 0.00 0.00 6.13
59 60 1.081892 GCATGCTAGTATGATGCGGG 58.918 55.000 23.23 0.00 33.67 6.13
60 61 2.090400 AGCATGCTAGTATGATGCGG 57.910 50.000 21.21 0.00 45.84 5.69
61 62 2.602211 GCTAGCATGCTAGTATGATGCG 59.398 50.000 40.85 22.94 45.84 4.73
62 63 2.602211 CGCTAGCATGCTAGTATGATGC 59.398 50.000 40.85 29.68 45.67 3.91
63 64 3.119352 TCCGCTAGCATGCTAGTATGATG 60.119 47.826 40.85 27.24 45.67 3.07
64 65 3.092301 TCCGCTAGCATGCTAGTATGAT 58.908 45.455 40.85 19.57 45.67 2.45
65 66 2.514803 TCCGCTAGCATGCTAGTATGA 58.485 47.619 40.85 32.70 45.67 2.15
66 67 3.303881 TTCCGCTAGCATGCTAGTATG 57.696 47.619 40.85 32.22 45.67 2.39
67 68 4.543590 ATTTCCGCTAGCATGCTAGTAT 57.456 40.909 40.85 27.36 45.67 2.12
68 69 4.321750 GGTATTTCCGCTAGCATGCTAGTA 60.322 45.833 40.85 28.99 45.67 1.82
69 70 2.918712 ATTTCCGCTAGCATGCTAGT 57.081 45.000 40.85 25.62 45.67 2.57
70 71 2.996621 GGTATTTCCGCTAGCATGCTAG 59.003 50.000 39.05 39.05 46.41 3.42
71 72 2.632996 AGGTATTTCCGCTAGCATGCTA 59.367 45.455 25.40 25.40 41.99 3.49
72 73 1.417890 AGGTATTTCCGCTAGCATGCT 59.582 47.619 25.99 25.99 41.99 3.79
73 74 1.801178 GAGGTATTTCCGCTAGCATGC 59.199 52.381 16.45 10.51 41.99 4.06
74 75 3.111853 TGAGGTATTTCCGCTAGCATG 57.888 47.619 16.45 5.14 41.99 4.06
75 76 4.081420 CCTATGAGGTATTTCCGCTAGCAT 60.081 45.833 16.45 2.83 41.99 3.79
76 77 3.258372 CCTATGAGGTATTTCCGCTAGCA 59.742 47.826 16.45 0.00 41.99 3.49
187 189 2.022195 TGTCAGTGTATCGTAGAGCCC 58.978 52.381 0.00 0.00 43.63 5.19
296 299 2.080286 ACGTGGCATGTAACTGACTC 57.920 50.000 11.37 0.00 0.00 3.36
308 311 6.905544 TGTAAAATCGATATTTACGTGGCA 57.094 33.333 23.13 12.54 43.11 4.92
368 372 5.479375 TCTTTTAGTTGAGAGGGACATACGT 59.521 40.000 0.00 0.00 0.00 3.57
391 397 6.201806 CGGATGAAGAGGTGATATGTTTCTTC 59.798 42.308 5.77 5.77 42.42 2.87
393 399 5.363868 TCGGATGAAGAGGTGATATGTTTCT 59.636 40.000 0.00 0.00 0.00 2.52
396 402 4.502259 GCTCGGATGAAGAGGTGATATGTT 60.502 45.833 0.00 0.00 36.31 2.71
400 406 2.887783 GAGCTCGGATGAAGAGGTGATA 59.112 50.000 0.00 0.00 45.20 2.15
439 445 1.202770 AGGTCCGTAAAGCTGCTGTTT 60.203 47.619 1.35 0.00 0.00 2.83
441 447 0.037232 GAGGTCCGTAAAGCTGCTGT 60.037 55.000 1.35 0.00 0.00 4.40
444 450 2.667473 TTAGAGGTCCGTAAAGCTGC 57.333 50.000 0.00 0.00 0.00 5.25
454 460 3.955551 CAGAGGGAGTACTTTAGAGGTCC 59.044 52.174 0.00 0.00 0.00 4.46
467 473 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
468 474 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
469 475 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
470 476 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
471 477 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
530 536 9.609346 GCAAACTACTCCCTCTGTAAATTAATA 57.391 33.333 0.00 0.00 0.00 0.98
531 537 8.329502 AGCAAACTACTCCCTCTGTAAATTAAT 58.670 33.333 0.00 0.00 0.00 1.40
532 538 7.686434 AGCAAACTACTCCCTCTGTAAATTAA 58.314 34.615 0.00 0.00 0.00 1.40
533 539 7.253905 AGCAAACTACTCCCTCTGTAAATTA 57.746 36.000 0.00 0.00 0.00 1.40
534 540 6.128138 AGCAAACTACTCCCTCTGTAAATT 57.872 37.500 0.00 0.00 0.00 1.82
535 541 5.763876 AGCAAACTACTCCCTCTGTAAAT 57.236 39.130 0.00 0.00 0.00 1.40
536 542 5.071250 TCAAGCAAACTACTCCCTCTGTAAA 59.929 40.000 0.00 0.00 0.00 2.01
537 543 4.591498 TCAAGCAAACTACTCCCTCTGTAA 59.409 41.667 0.00 0.00 0.00 2.41
538 544 4.157246 TCAAGCAAACTACTCCCTCTGTA 58.843 43.478 0.00 0.00 0.00 2.74
539 545 2.972713 TCAAGCAAACTACTCCCTCTGT 59.027 45.455 0.00 0.00 0.00 3.41
540 546 3.685139 TCAAGCAAACTACTCCCTCTG 57.315 47.619 0.00 0.00 0.00 3.35
541 547 3.558109 GCTTCAAGCAAACTACTCCCTCT 60.558 47.826 3.89 0.00 41.89 3.69
542 548 2.744741 GCTTCAAGCAAACTACTCCCTC 59.255 50.000 3.89 0.00 41.89 4.30
543 549 2.784347 GCTTCAAGCAAACTACTCCCT 58.216 47.619 3.89 0.00 41.89 4.20
544 550 1.464997 CGCTTCAAGCAAACTACTCCC 59.535 52.381 10.73 0.00 42.58 4.30
545 551 2.413453 CTCGCTTCAAGCAAACTACTCC 59.587 50.000 10.73 0.00 42.58 3.85
546 552 2.159774 GCTCGCTTCAAGCAAACTACTC 60.160 50.000 10.73 0.00 42.58 2.59
595 601 7.602753 ACAGAGAAAAGTAGTGCAAAAACTTT 58.397 30.769 13.66 13.66 43.43 2.66
611 617 7.561021 TTGTGCTTGTACAATACAGAGAAAA 57.439 32.000 19.06 7.13 40.24 2.29
630 636 0.312102 GGTCACTTTGGAGCTTGTGC 59.688 55.000 0.00 0.00 40.05 4.57
716 1196 3.301274 GCCATCTCTCTACCTGGTACTT 58.699 50.000 1.49 0.00 0.00 2.24
762 1245 1.350351 ACAGCTCCATTGAGTCAGCTT 59.650 47.619 1.29 0.00 40.33 3.74
864 1351 4.178540 GTGCTTCGTGGCAAATACTACTA 58.821 43.478 6.63 0.00 44.18 1.82
865 1352 3.000727 GTGCTTCGTGGCAAATACTACT 58.999 45.455 6.63 0.00 44.18 2.57
866 1353 2.739913 TGTGCTTCGTGGCAAATACTAC 59.260 45.455 6.63 0.00 44.18 2.73
867 1354 2.739913 GTGTGCTTCGTGGCAAATACTA 59.260 45.455 6.63 0.00 44.18 1.82
868 1355 1.535462 GTGTGCTTCGTGGCAAATACT 59.465 47.619 6.63 0.00 44.18 2.12
869 1356 1.535462 AGTGTGCTTCGTGGCAAATAC 59.465 47.619 6.63 6.96 44.18 1.89
870 1357 1.890876 AGTGTGCTTCGTGGCAAATA 58.109 45.000 6.63 0.00 44.18 1.40
878 1365 1.400494 GGTGAAACAAGTGTGCTTCGT 59.600 47.619 0.00 0.00 39.98 3.85
883 1374 1.490621 GCATGGTGAAACAAGTGTGC 58.509 50.000 0.00 0.00 39.98 4.57
903 1394 0.807496 GCAAGGCAGATGAGGTTGTC 59.193 55.000 0.00 0.00 0.00 3.18
911 1402 0.179089 ACGAGCTAGCAAGGCAGATG 60.179 55.000 18.83 0.00 0.00 2.90
930 1425 5.092554 TGTTTCCGAAGTATGGAATGCTA 57.907 39.130 0.00 0.00 38.77 3.49
942 1437 0.868406 GTCAGTGGCTGTTTCCGAAG 59.132 55.000 0.00 0.00 32.61 3.79
945 1440 0.670546 ATCGTCAGTGGCTGTTTCCG 60.671 55.000 0.00 0.00 32.61 4.30
967 1462 2.588146 CCGGTGAGGTACGTAGCACG 62.588 65.000 25.28 20.94 40.73 5.34
968 1463 1.138247 CCGGTGAGGTACGTAGCAC 59.862 63.158 25.28 19.70 34.51 4.40
969 1464 2.703798 GCCGGTGAGGTACGTAGCA 61.704 63.158 25.28 7.97 43.70 3.49
970 1465 2.103736 GCCGGTGAGGTACGTAGC 59.896 66.667 16.85 16.85 43.70 3.58
972 1467 2.035469 TGGCCGGTGAGGTACGTA 59.965 61.111 1.90 0.00 43.70 3.57
973 1468 3.688159 GTGGCCGGTGAGGTACGT 61.688 66.667 1.90 0.00 43.70 3.57
974 1469 4.446413 GGTGGCCGGTGAGGTACG 62.446 72.222 1.90 0.00 43.70 3.67
975 1470 4.446413 CGGTGGCCGGTGAGGTAC 62.446 72.222 1.90 0.00 44.15 3.34
1048 1544 3.204526 CGACGAGGTTGACTAGTAGGAT 58.795 50.000 0.00 0.00 35.01 3.24
1051 1547 2.998670 TCACGACGAGGTTGACTAGTAG 59.001 50.000 0.00 0.00 35.01 2.57
1571 2079 1.715268 CGTTTATCATGCGCGACATCG 60.715 52.381 12.10 7.87 36.64 3.84
1785 2299 1.631072 GTCGCGGATGATGTCGTTG 59.369 57.895 6.13 0.00 0.00 4.10
1883 2403 3.241530 TGGTGAGGGCGCACTTCT 61.242 61.111 16.43 1.89 38.78 2.85
1885 2405 4.643387 GGTGGTGAGGGCGCACTT 62.643 66.667 16.43 0.00 38.78 3.16
1991 2677 3.431725 GGAGGCGCGGGTTTCTTG 61.432 66.667 8.83 0.00 0.00 3.02
2548 3257 7.094032 GGTGATGGGAAGGATTGATCATTAATC 60.094 40.741 0.00 0.00 30.07 1.75
2559 3268 2.091665 GTGGATGGTGATGGGAAGGATT 60.092 50.000 0.00 0.00 0.00 3.01
2561 3270 0.918983 GTGGATGGTGATGGGAAGGA 59.081 55.000 0.00 0.00 0.00 3.36
2564 3273 2.278245 AGAAGTGGATGGTGATGGGAA 58.722 47.619 0.00 0.00 0.00 3.97
2568 3277 2.283298 CGGAAGAAGTGGATGGTGATG 58.717 52.381 0.00 0.00 0.00 3.07
2569 3278 1.909302 ACGGAAGAAGTGGATGGTGAT 59.091 47.619 0.00 0.00 0.00 3.06
2570 3279 1.348064 ACGGAAGAAGTGGATGGTGA 58.652 50.000 0.00 0.00 0.00 4.02
2571 3280 2.185004 AACGGAAGAAGTGGATGGTG 57.815 50.000 0.00 0.00 0.00 4.17
2572 3281 2.236395 CCTAACGGAAGAAGTGGATGGT 59.764 50.000 0.00 0.00 0.00 3.55
2573 3282 2.420129 CCCTAACGGAAGAAGTGGATGG 60.420 54.545 0.00 0.00 0.00 3.51
2747 4259 7.038048 AGTACGTAATTACAGCTAAAGAACCC 58.962 38.462 15.67 0.00 0.00 4.11
2767 4279 8.897872 ATTTAGTTATATTTGGGTGGAGTACG 57.102 34.615 0.00 0.00 0.00 3.67
2833 5337 5.809001 ACATATACATGGGTCTGCATAAGG 58.191 41.667 0.00 0.00 36.39 2.69
2840 5344 5.087323 AGGGAGTACATATACATGGGTCTG 58.913 45.833 0.00 0.00 36.39 3.51
2850 5354 4.067896 GACGAACGGAGGGAGTACATATA 58.932 47.826 0.00 0.00 0.00 0.86
2851 5355 2.883386 GACGAACGGAGGGAGTACATAT 59.117 50.000 0.00 0.00 0.00 1.78
2852 5356 2.292267 GACGAACGGAGGGAGTACATA 58.708 52.381 0.00 0.00 0.00 2.29
2853 5357 1.101331 GACGAACGGAGGGAGTACAT 58.899 55.000 0.00 0.00 0.00 2.29
2854 5358 0.250858 TGACGAACGGAGGGAGTACA 60.251 55.000 0.00 0.00 0.00 2.90
2855 5359 1.101331 ATGACGAACGGAGGGAGTAC 58.899 55.000 0.00 0.00 0.00 2.73
2856 5360 2.292267 GTATGACGAACGGAGGGAGTA 58.708 52.381 0.00 0.00 0.00 2.59
2857 5361 1.101331 GTATGACGAACGGAGGGAGT 58.899 55.000 0.00 0.00 0.00 3.85
2858 5362 1.100510 TGTATGACGAACGGAGGGAG 58.899 55.000 0.00 0.00 0.00 4.30
2859 5363 1.475280 CTTGTATGACGAACGGAGGGA 59.525 52.381 0.00 0.00 0.00 4.20
2860 5364 1.203994 ACTTGTATGACGAACGGAGGG 59.796 52.381 0.00 0.00 0.00 4.30
2861 5365 2.163815 AGACTTGTATGACGAACGGAGG 59.836 50.000 0.00 0.00 0.00 4.30
2862 5366 3.489180 AGACTTGTATGACGAACGGAG 57.511 47.619 0.00 0.00 0.00 4.63
2863 5367 3.928727 AAGACTTGTATGACGAACGGA 57.071 42.857 0.00 0.00 0.00 4.69
2864 5368 4.235360 AGAAAGACTTGTATGACGAACGG 58.765 43.478 0.00 0.00 0.00 4.44
2865 5369 6.312487 TCTAGAAAGACTTGTATGACGAACG 58.688 40.000 0.00 0.00 0.00 3.95
2866 5370 7.528307 TCTCTAGAAAGACTTGTATGACGAAC 58.472 38.462 0.00 0.00 0.00 3.95
2867 5371 7.683437 TCTCTAGAAAGACTTGTATGACGAA 57.317 36.000 0.00 0.00 0.00 3.85
2868 5372 7.867305 ATCTCTAGAAAGACTTGTATGACGA 57.133 36.000 0.00 0.00 0.00 4.20
2869 5373 8.918961 AAATCTCTAGAAAGACTTGTATGACG 57.081 34.615 0.00 0.00 0.00 4.35
2870 5374 9.862371 TGAAATCTCTAGAAAGACTTGTATGAC 57.138 33.333 0.00 0.00 0.00 3.06
2871 5375 9.862371 GTGAAATCTCTAGAAAGACTTGTATGA 57.138 33.333 0.00 0.00 0.00 2.15
2872 5376 9.868277 AGTGAAATCTCTAGAAAGACTTGTATG 57.132 33.333 0.00 0.00 0.00 2.39
2875 5379 9.868277 CATAGTGAAATCTCTAGAAAGACTTGT 57.132 33.333 0.00 0.00 0.00 3.16
2879 5383 9.862371 TGTTCATAGTGAAATCTCTAGAAAGAC 57.138 33.333 0.00 0.00 38.22 3.01
2882 5386 9.996554 TGTTGTTCATAGTGAAATCTCTAGAAA 57.003 29.630 0.00 0.00 38.22 2.52
2886 5390 9.516314 CGTATGTTGTTCATAGTGAAATCTCTA 57.484 33.333 0.00 0.00 38.22 2.43
2887 5391 7.492669 CCGTATGTTGTTCATAGTGAAATCTCT 59.507 37.037 0.00 0.00 38.22 3.10
2888 5392 7.491372 TCCGTATGTTGTTCATAGTGAAATCTC 59.509 37.037 0.00 0.00 38.22 2.75
2889 5393 7.327975 TCCGTATGTTGTTCATAGTGAAATCT 58.672 34.615 0.00 0.00 38.22 2.40
2890 5394 7.534085 TCCGTATGTTGTTCATAGTGAAATC 57.466 36.000 0.00 0.00 38.22 2.17
2891 5395 7.552687 ACATCCGTATGTTGTTCATAGTGAAAT 59.447 33.333 0.00 0.00 44.07 2.17
2892 5396 6.876789 ACATCCGTATGTTGTTCATAGTGAAA 59.123 34.615 0.00 0.00 44.07 2.69
2893 5397 6.403049 ACATCCGTATGTTGTTCATAGTGAA 58.597 36.000 0.00 0.00 44.07 3.18
2894 5398 5.972935 ACATCCGTATGTTGTTCATAGTGA 58.027 37.500 0.00 0.00 44.07 3.41
2895 5399 7.946655 ATACATCCGTATGTTGTTCATAGTG 57.053 36.000 0.00 0.00 44.07 2.74
2899 5403 9.856488 GTCTATATACATCCGTATGTTGTTCAT 57.144 33.333 0.00 0.00 44.07 2.57
2900 5404 8.019094 CGTCTATATACATCCGTATGTTGTTCA 58.981 37.037 0.00 0.00 44.07 3.18
2901 5405 8.019669 ACGTCTATATACATCCGTATGTTGTTC 58.980 37.037 0.00 0.00 44.07 3.18
2902 5406 7.879070 ACGTCTATATACATCCGTATGTTGTT 58.121 34.615 0.00 0.00 44.07 2.83
2903 5407 7.444629 ACGTCTATATACATCCGTATGTTGT 57.555 36.000 0.00 0.00 44.07 3.32
2904 5408 8.663025 ACTACGTCTATATACATCCGTATGTTG 58.337 37.037 0.00 0.00 44.07 3.33
2905 5409 8.783833 ACTACGTCTATATACATCCGTATGTT 57.216 34.615 0.00 0.00 44.07 2.71
2910 5414 9.149225 CTCTAAACTACGTCTATATACATCCGT 57.851 37.037 0.00 0.00 0.00 4.69
2911 5415 9.149225 ACTCTAAACTACGTCTATATACATCCG 57.851 37.037 0.00 0.00 0.00 4.18
2920 5424 9.610705 TGAATCTACACTCTAAACTACGTCTAT 57.389 33.333 0.00 0.00 0.00 1.98
2921 5425 8.877779 GTGAATCTACACTCTAAACTACGTCTA 58.122 37.037 0.00 0.00 37.73 2.59
2922 5426 7.607223 AGTGAATCTACACTCTAAACTACGTCT 59.393 37.037 0.00 0.00 46.36 4.18
2923 5427 7.750769 AGTGAATCTACACTCTAAACTACGTC 58.249 38.462 0.00 0.00 46.36 4.34
2924 5428 7.684937 AGTGAATCTACACTCTAAACTACGT 57.315 36.000 0.00 0.00 46.36 3.57
2936 5440 5.388890 CGAAGCAAACTGAGTGAATCTACAC 60.389 44.000 0.00 0.00 40.60 2.90
2937 5441 4.686091 CGAAGCAAACTGAGTGAATCTACA 59.314 41.667 0.00 0.00 0.00 2.74
2938 5442 4.686554 ACGAAGCAAACTGAGTGAATCTAC 59.313 41.667 0.00 0.00 0.00 2.59
2939 5443 4.883083 ACGAAGCAAACTGAGTGAATCTA 58.117 39.130 0.00 0.00 0.00 1.98
2940 5444 3.733337 ACGAAGCAAACTGAGTGAATCT 58.267 40.909 0.00 0.00 0.00 2.40
2941 5445 5.120830 ACATACGAAGCAAACTGAGTGAATC 59.879 40.000 0.00 0.00 0.00 2.52
2942 5446 4.997395 ACATACGAAGCAAACTGAGTGAAT 59.003 37.500 0.00 0.00 0.00 2.57
2943 5447 4.377021 ACATACGAAGCAAACTGAGTGAA 58.623 39.130 0.00 0.00 0.00 3.18
2944 5448 3.990092 ACATACGAAGCAAACTGAGTGA 58.010 40.909 0.00 0.00 0.00 3.41
2945 5449 4.923871 ACTACATACGAAGCAAACTGAGTG 59.076 41.667 0.00 0.00 0.00 3.51
2946 5450 5.047943 AGACTACATACGAAGCAAACTGAGT 60.048 40.000 0.00 0.00 0.00 3.41
2947 5451 5.403246 AGACTACATACGAAGCAAACTGAG 58.597 41.667 0.00 0.00 0.00 3.35
2948 5452 5.386958 AGACTACATACGAAGCAAACTGA 57.613 39.130 0.00 0.00 0.00 3.41
2949 5453 6.467723 AAAGACTACATACGAAGCAAACTG 57.532 37.500 0.00 0.00 0.00 3.16
2950 5454 8.773404 ATAAAAGACTACATACGAAGCAAACT 57.227 30.769 0.00 0.00 0.00 2.66
2951 5455 9.262472 CAATAAAAGACTACATACGAAGCAAAC 57.738 33.333 0.00 0.00 0.00 2.93
2952 5456 8.447833 CCAATAAAAGACTACATACGAAGCAAA 58.552 33.333 0.00 0.00 0.00 3.68
2953 5457 7.820386 TCCAATAAAAGACTACATACGAAGCAA 59.180 33.333 0.00 0.00 0.00 3.91
2954 5458 7.324935 TCCAATAAAAGACTACATACGAAGCA 58.675 34.615 0.00 0.00 0.00 3.91
2955 5459 7.766219 TCCAATAAAAGACTACATACGAAGC 57.234 36.000 0.00 0.00 0.00 3.86
2957 5461 9.321562 GGATTCCAATAAAAGACTACATACGAA 57.678 33.333 0.00 0.00 0.00 3.85
2958 5462 7.929785 GGGATTCCAATAAAAGACTACATACGA 59.070 37.037 4.80 0.00 0.00 3.43
2959 5463 7.931948 AGGGATTCCAATAAAAGACTACATACG 59.068 37.037 4.80 0.00 34.83 3.06
2988 5492 6.999871 TCCTCCGTTCCTAAATGTAAGTTTTT 59.000 34.615 0.00 0.00 0.00 1.94
2989 5493 6.536447 TCCTCCGTTCCTAAATGTAAGTTTT 58.464 36.000 0.00 0.00 0.00 2.43
2990 5494 6.117975 TCCTCCGTTCCTAAATGTAAGTTT 57.882 37.500 0.00 0.00 0.00 2.66
2991 5495 5.750352 TCCTCCGTTCCTAAATGTAAGTT 57.250 39.130 0.00 0.00 0.00 2.66
2992 5496 5.247792 ACTTCCTCCGTTCCTAAATGTAAGT 59.752 40.000 0.00 0.00 0.00 2.24
2993 5497 5.731591 ACTTCCTCCGTTCCTAAATGTAAG 58.268 41.667 0.00 0.00 0.00 2.34
2994 5498 5.750352 ACTTCCTCCGTTCCTAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
2995 5499 5.954150 ACTACTTCCTCCGTTCCTAAATGTA 59.046 40.000 0.00 0.00 0.00 2.29
2996 5500 4.776308 ACTACTTCCTCCGTTCCTAAATGT 59.224 41.667 0.00 0.00 0.00 2.71
2997 5501 5.340439 ACTACTTCCTCCGTTCCTAAATG 57.660 43.478 0.00 0.00 0.00 2.32
2998 5502 5.731591 CAACTACTTCCTCCGTTCCTAAAT 58.268 41.667 0.00 0.00 0.00 1.40
2999 5503 4.562143 GCAACTACTTCCTCCGTTCCTAAA 60.562 45.833 0.00 0.00 0.00 1.85
3000 5504 3.056322 GCAACTACTTCCTCCGTTCCTAA 60.056 47.826 0.00 0.00 0.00 2.69
3001 5505 2.494870 GCAACTACTTCCTCCGTTCCTA 59.505 50.000 0.00 0.00 0.00 2.94
3002 5506 1.275573 GCAACTACTTCCTCCGTTCCT 59.724 52.381 0.00 0.00 0.00 3.36
3003 5507 1.275573 AGCAACTACTTCCTCCGTTCC 59.724 52.381 0.00 0.00 0.00 3.62
3004 5508 2.745515 AGCAACTACTTCCTCCGTTC 57.254 50.000 0.00 0.00 0.00 3.95
3005 5509 3.577415 AGTTAGCAACTACTTCCTCCGTT 59.423 43.478 0.44 0.00 40.69 4.44
3006 5510 3.163467 AGTTAGCAACTACTTCCTCCGT 58.837 45.455 0.44 0.00 40.69 4.69
3007 5511 3.870633 AGTTAGCAACTACTTCCTCCG 57.129 47.619 0.44 0.00 40.69 4.63
3008 5512 5.100943 CGTAAGTTAGCAACTACTTCCTCC 58.899 45.833 2.60 0.00 41.91 4.30
3009 5513 4.562000 GCGTAAGTTAGCAACTACTTCCTC 59.438 45.833 2.60 0.00 41.91 3.71
3010 5514 4.021719 TGCGTAAGTTAGCAACTACTTCCT 60.022 41.667 5.02 0.00 41.91 3.36
3011 5515 4.240096 TGCGTAAGTTAGCAACTACTTCC 58.760 43.478 5.02 0.00 41.91 3.46
3105 5611 3.120199 CGAGTAAGCCAAAACACCATCAG 60.120 47.826 0.00 0.00 0.00 2.90
3109 5615 2.623878 TCGAGTAAGCCAAAACACCA 57.376 45.000 0.00 0.00 0.00 4.17
3111 5617 7.302524 TCAATTATTCGAGTAAGCCAAAACAC 58.697 34.615 6.53 0.00 0.00 3.32
3114 5620 8.275015 TCATCAATTATTCGAGTAAGCCAAAA 57.725 30.769 6.53 0.00 0.00 2.44
3130 5911 5.357878 GCACCAGGACAGAAATCATCAATTA 59.642 40.000 0.00 0.00 0.00 1.40
3284 6073 0.393537 CCCTGGCACTTCATGGAGAC 60.394 60.000 8.39 0.00 0.00 3.36
3298 6401 3.297134 ACATACAAAGTATGGCCCTGG 57.703 47.619 18.27 0.00 0.00 4.45
3379 6716 4.084589 GCATTTTGGTTACCTTTTGCTTCG 60.085 41.667 2.07 0.00 0.00 3.79
3469 6806 1.881973 TCAGGTGCTTCATGCTTCAAC 59.118 47.619 0.00 0.00 43.37 3.18
3486 6823 3.380004 ACTCGCTGAAGATAGGTTCTCAG 59.620 47.826 0.00 0.00 34.95 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.