Multiple sequence alignment - TraesCS6D01G077800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G077800 chr6D 100.000 5881 0 0 1 5881 41933004 41927124 0.000000e+00 10861.0
1 TraesCS6D01G077800 chr6A 91.344 2530 151 32 661 3166 52402672 52400187 0.000000e+00 3397.0
2 TraesCS6D01G077800 chr6A 90.036 1104 68 27 3225 4293 52400173 52399077 0.000000e+00 1391.0
3 TraesCS6D01G077800 chr6A 85.816 980 82 24 4290 5257 52398965 52398031 0.000000e+00 987.0
4 TraesCS6D01G077800 chr6A 92.403 566 31 7 5324 5881 52397572 52397011 0.000000e+00 797.0
5 TraesCS6D01G077800 chr6A 85.560 464 61 5 6 467 52403137 52402678 1.150000e-131 481.0
6 TraesCS6D01G077800 chr6A 92.045 176 13 1 498 672 297678790 297678615 4.550000e-61 246.0
7 TraesCS6D01G077800 chr6B 86.208 3183 293 78 668 3781 95323765 95326870 0.000000e+00 3312.0
8 TraesCS6D01G077800 chr6B 92.267 569 31 6 5320 5879 95328603 95329167 0.000000e+00 795.0
9 TraesCS6D01G077800 chr6B 86.507 667 68 15 4609 5263 95327569 95328225 0.000000e+00 713.0
10 TraesCS6D01G077800 chr6B 86.573 499 64 3 1 497 95238905 95239402 1.110000e-151 547.0
11 TraesCS6D01G077800 chr6B 82.326 662 69 26 3969 4604 95326866 95327505 1.120000e-146 531.0
12 TraesCS6D01G077800 chr6B 85.795 176 25 0 3791 3966 450236397 450236222 2.800000e-43 187.0
13 TraesCS6D01G077800 chr2B 93.064 173 11 1 498 670 421875297 421875126 9.780000e-63 252.0
14 TraesCS6D01G077800 chr2B 92.090 177 14 0 488 664 594833865 594834041 3.520000e-62 250.0
15 TraesCS6D01G077800 chr2B 86.441 177 24 0 3790 3966 670637302 670637126 1.670000e-45 195.0
16 TraesCS6D01G077800 chr5B 92.090 177 12 2 488 663 660591357 660591182 1.270000e-61 248.0
17 TraesCS6D01G077800 chr3B 92.486 173 13 0 491 663 669602353 669602525 1.270000e-61 248.0
18 TraesCS6D01G077800 chr3B 85.946 185 19 7 3783 3964 434983348 434983528 2.160000e-44 191.0
19 TraesCS6D01G077800 chr2D 92.486 173 13 0 489 661 475088511 475088339 1.270000e-61 248.0
20 TraesCS6D01G077800 chr2D 92.486 173 13 0 497 669 554128208 554128380 1.270000e-61 248.0
21 TraesCS6D01G077800 chr2D 91.160 181 14 2 488 666 289313268 289313088 1.640000e-60 244.0
22 TraesCS6D01G077800 chr4A 92.000 175 14 0 491 665 582530148 582529974 4.550000e-61 246.0
23 TraesCS6D01G077800 chr4A 83.333 258 36 5 253 506 619385644 619385898 1.270000e-56 231.0
24 TraesCS6D01G077800 chr7B 81.377 247 38 6 263 506 455994988 455994747 1.670000e-45 195.0
25 TraesCS6D01G077800 chr7B 83.824 204 28 5 254 454 448612208 448612007 7.780000e-44 189.0
26 TraesCS6D01G077800 chr7B 83.721 86 13 1 73 157 663427649 663427564 4.890000e-11 80.5
27 TraesCS6D01G077800 chr7B 84.722 72 10 1 291 362 504946794 504946864 2.940000e-08 71.3
28 TraesCS6D01G077800 chr7D 84.158 202 28 4 254 453 431030646 431030447 6.010000e-45 193.0
29 TraesCS6D01G077800 chr1B 85.955 178 25 0 3790 3967 268403569 268403392 2.160000e-44 191.0
30 TraesCS6D01G077800 chr1B 85.311 177 26 0 3790 3966 438220913 438220737 3.620000e-42 183.0
31 TraesCS6D01G077800 chr3A 85.556 180 26 0 3787 3966 202671096 202671275 7.780000e-44 189.0
32 TraesCS6D01G077800 chr5D 85.000 180 27 0 3787 3966 28435283 28435462 3.620000e-42 183.0
33 TraesCS6D01G077800 chr5D 83.117 77 13 0 377 453 304488559 304488635 2.940000e-08 71.3
34 TraesCS6D01G077800 chr1D 85.000 180 27 0 3787 3966 249720093 249720272 3.620000e-42 183.0
35 TraesCS6D01G077800 chr4D 79.200 125 20 5 254 377 49521908 49521789 1.360000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G077800 chr6D 41927124 41933004 5880 True 10861.00 10861 100.0000 1 5881 1 chr6D.!!$R1 5880
1 TraesCS6D01G077800 chr6A 52397011 52403137 6126 True 1410.60 3397 89.0318 6 5881 5 chr6A.!!$R2 5875
2 TraesCS6D01G077800 chr6B 95323765 95329167 5402 False 1337.75 3312 86.8270 668 5879 4 chr6B.!!$F2 5211

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 493 0.332293 TGATGCCATGGCTTCCTTCA 59.668 50.0 36.53 26.54 42.38 3.02 F
1954 2011 0.252197 AGACTGATAACAACCGGGCC 59.748 55.0 6.32 0.00 0.00 5.80 F
1955 2012 0.252197 GACTGATAACAACCGGGCCT 59.748 55.0 6.32 0.00 0.00 5.19 F
2226 2287 1.514003 TATTTTCGGCACAGCGTTCA 58.486 45.0 0.00 0.00 0.00 3.18 F
3962 4118 1.530323 TAGGCGCTCCTTTTTCAACC 58.470 50.0 7.64 0.00 40.66 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2349 0.243636 GCCAACGAACCCAAATCCAG 59.756 55.000 0.00 0.0 0.00 3.86 R
3650 3802 1.006281 TCCCTTGAGGATTTGCAGCAT 59.994 47.619 0.00 0.0 40.93 3.79 R
3942 4098 1.883926 GGTTGAAAAAGGAGCGCCTAA 59.116 47.619 10.31 0.0 46.28 2.69 R
4065 4227 0.250252 TGACATCGGCAAACTGAGCA 60.250 50.000 0.00 0.0 33.72 4.26 R
5511 6327 0.177604 CTGAGAGGGGTGATGCAGAC 59.822 60.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 2.230940 CGTGAGCGCTAATGGGTCG 61.231 63.158 11.50 0.00 0.00 4.79
39 41 2.355986 TGAGCGCTAATGGGTCGGT 61.356 57.895 11.50 0.00 36.61 4.69
56 58 2.014128 CGGTCCGATTTAACTTGCCAT 58.986 47.619 4.91 0.00 0.00 4.40
57 59 2.223249 CGGTCCGATTTAACTTGCCATG 60.223 50.000 4.91 0.00 0.00 3.66
59 61 3.181500 GGTCCGATTTAACTTGCCATGTC 60.181 47.826 0.00 0.00 0.00 3.06
65 67 5.343058 CGATTTAACTTGCCATGTCAACAAG 59.657 40.000 11.34 11.34 44.98 3.16
95 97 4.168101 AGGTTCAAAGTAGACCAGGATCA 58.832 43.478 0.00 0.00 0.00 2.92
100 102 6.042638 TCAAAGTAGACCAGGATCAGAAAG 57.957 41.667 0.00 0.00 0.00 2.62
111 113 2.029918 GGATCAGAAAGTTTGGTGTGCC 60.030 50.000 0.00 0.00 0.00 5.01
129 131 6.024049 GTGTGCCGATTTCAAAGATTAGAAG 58.976 40.000 0.00 0.00 0.00 2.85
131 133 6.206634 TGTGCCGATTTCAAAGATTAGAAGTT 59.793 34.615 0.00 0.00 0.00 2.66
134 136 7.121168 TGCCGATTTCAAAGATTAGAAGTTCAT 59.879 33.333 5.50 0.00 0.00 2.57
135 137 7.430502 GCCGATTTCAAAGATTAGAAGTTCATG 59.569 37.037 5.50 0.00 0.00 3.07
140 142 7.912056 TCAAAGATTAGAAGTTCATGGTCTG 57.088 36.000 5.50 0.00 0.00 3.51
149 151 6.479884 AGAAGTTCATGGTCTGATTTAGCTT 58.520 36.000 5.50 0.00 32.72 3.74
157 159 9.023962 TCATGGTCTGATTTAGCTTTTGTTTAT 57.976 29.630 0.00 0.00 0.00 1.40
204 206 5.666969 TTCGTCTACAAGTTCATGGTTTG 57.333 39.130 0.00 0.00 0.00 2.93
209 211 6.196353 CGTCTACAAGTTCATGGTTTGTTTTG 59.804 38.462 13.08 3.72 36.52 2.44
210 212 7.033185 GTCTACAAGTTCATGGTTTGTTTTGT 58.967 34.615 13.08 8.09 36.52 2.83
218 220 8.931775 AGTTCATGGTTTGTTTTGTACTTTTTC 58.068 29.630 0.00 0.00 0.00 2.29
231 233 7.798596 TTGTACTTTTTCCGTTTACCATGTA 57.201 32.000 0.00 0.00 0.00 2.29
239 241 4.088634 TCCGTTTACCATGTACCACTACT 58.911 43.478 0.00 0.00 0.00 2.57
243 245 2.942604 ACCATGTACCACTACTCCCT 57.057 50.000 0.00 0.00 0.00 4.20
244 246 5.470755 TTACCATGTACCACTACTCCCTA 57.529 43.478 0.00 0.00 0.00 3.53
246 248 4.892198 ACCATGTACCACTACTCCCTAAT 58.108 43.478 0.00 0.00 0.00 1.73
257 259 6.540189 CCACTACTCCCTAATGTCTCATTTTG 59.460 42.308 0.37 0.00 0.00 2.44
273 275 6.669154 TCTCATTTTGAGGGATAAAGCCAATT 59.331 34.615 4.78 0.00 44.39 2.32
275 277 8.372877 TCATTTTGAGGGATAAAGCCAATTTA 57.627 30.769 0.00 0.00 37.75 1.40
276 278 8.991275 TCATTTTGAGGGATAAAGCCAATTTAT 58.009 29.630 0.00 0.00 44.96 1.40
277 279 9.048446 CATTTTGAGGGATAAAGCCAATTTATG 57.952 33.333 0.00 0.00 42.84 1.90
285 287 7.653311 GGGATAAAGCCAATTTATGTTGATCAC 59.347 37.037 0.00 0.00 42.84 3.06
286 288 7.379529 GGATAAAGCCAATTTATGTTGATCACG 59.620 37.037 0.00 0.00 42.84 4.35
287 289 4.637483 AGCCAATTTATGTTGATCACGG 57.363 40.909 0.00 0.00 0.00 4.94
288 290 3.381272 AGCCAATTTATGTTGATCACGGG 59.619 43.478 0.00 0.00 0.00 5.28
327 329 7.485913 GGATACAATTTGTGTCATGTGATTGAC 59.514 37.037 22.61 0.00 45.05 3.18
332 334 4.566545 TGTGTCATGTGATTGACCAAAC 57.433 40.909 2.43 0.00 44.37 2.93
333 335 4.206375 TGTGTCATGTGATTGACCAAACT 58.794 39.130 2.43 0.00 44.37 2.66
336 338 5.003160 TGTCATGTGATTGACCAAACTAGG 58.997 41.667 0.00 0.00 44.37 3.02
337 339 5.221823 TGTCATGTGATTGACCAAACTAGGA 60.222 40.000 0.00 0.00 44.37 2.94
340 342 6.375174 TCATGTGATTGACCAAACTAGGAATG 59.625 38.462 0.00 0.00 0.00 2.67
341 343 5.875224 TGTGATTGACCAAACTAGGAATGA 58.125 37.500 0.00 0.00 0.00 2.57
342 344 6.303054 TGTGATTGACCAAACTAGGAATGAA 58.697 36.000 0.00 0.00 0.00 2.57
346 348 4.906618 TGACCAAACTAGGAATGAAGACC 58.093 43.478 0.00 0.00 0.00 3.85
349 351 4.263506 ACCAAACTAGGAATGAAGACCAGG 60.264 45.833 0.00 0.00 0.00 4.45
357 359 4.080638 AGGAATGAAGACCAGGAGCTAAAG 60.081 45.833 0.00 0.00 0.00 1.85
387 390 6.697892 AGAAAATCTAGCTAACTATGTGCGTC 59.302 38.462 0.00 0.00 0.00 5.19
394 397 5.416083 AGCTAACTATGTGCGTCAACATTA 58.584 37.500 5.96 0.00 41.09 1.90
396 399 4.600012 AACTATGTGCGTCAACATTAGC 57.400 40.909 5.96 0.00 41.09 3.09
397 400 3.861840 ACTATGTGCGTCAACATTAGCT 58.138 40.909 5.96 0.00 41.09 3.32
398 401 3.618594 ACTATGTGCGTCAACATTAGCTG 59.381 43.478 0.00 0.00 41.09 4.24
408 411 2.185004 ACATTAGCTGCACGACCTTT 57.815 45.000 1.02 0.00 0.00 3.11
467 470 6.925165 AGTTTTGATCTTTTTGACGATTGCAT 59.075 30.769 0.00 0.00 0.00 3.96
468 471 6.932901 TTTGATCTTTTTGACGATTGCATC 57.067 33.333 0.00 0.00 0.00 3.91
469 472 4.985413 TGATCTTTTTGACGATTGCATCC 58.015 39.130 0.00 0.00 0.00 3.51
471 474 5.125900 TGATCTTTTTGACGATTGCATCCAT 59.874 36.000 0.00 0.00 0.00 3.41
472 475 4.735985 TCTTTTTGACGATTGCATCCATG 58.264 39.130 0.00 0.00 0.00 3.66
473 476 4.458642 TCTTTTTGACGATTGCATCCATGA 59.541 37.500 0.00 0.00 0.00 3.07
474 477 4.987408 TTTTGACGATTGCATCCATGAT 57.013 36.364 0.00 0.00 0.00 2.45
475 478 3.974871 TTGACGATTGCATCCATGATG 57.025 42.857 0.00 0.00 42.37 3.07
487 490 3.127099 CATGATGCCATGGCTTCCT 57.873 52.632 36.53 28.82 44.88 3.36
488 491 1.410004 CATGATGCCATGGCTTCCTT 58.590 50.000 36.53 26.04 44.88 3.36
489 492 1.340248 CATGATGCCATGGCTTCCTTC 59.660 52.381 36.53 24.83 44.88 3.46
490 493 0.332293 TGATGCCATGGCTTCCTTCA 59.668 50.000 36.53 26.54 42.38 3.02
491 494 1.030457 GATGCCATGGCTTCCTTCAG 58.970 55.000 35.53 0.00 42.51 3.02
492 495 1.041447 ATGCCATGGCTTCCTTCAGC 61.041 55.000 35.53 7.29 42.51 4.26
493 496 1.679977 GCCATGGCTTCCTTCAGCA 60.680 57.895 29.98 0.00 42.10 4.41
494 497 1.041447 GCCATGGCTTCCTTCAGCAT 61.041 55.000 29.98 0.00 42.10 3.79
495 498 1.481871 CCATGGCTTCCTTCAGCATT 58.518 50.000 0.00 0.00 42.10 3.56
496 499 2.658285 CCATGGCTTCCTTCAGCATTA 58.342 47.619 0.00 0.00 42.10 1.90
497 500 3.228453 CCATGGCTTCCTTCAGCATTAT 58.772 45.455 0.00 0.00 42.10 1.28
498 501 4.401022 CCATGGCTTCCTTCAGCATTATA 58.599 43.478 0.00 0.00 42.10 0.98
499 502 4.217118 CCATGGCTTCCTTCAGCATTATAC 59.783 45.833 0.00 0.00 42.10 1.47
500 503 4.778213 TGGCTTCCTTCAGCATTATACT 57.222 40.909 0.00 0.00 42.10 2.12
501 504 4.708177 TGGCTTCCTTCAGCATTATACTC 58.292 43.478 0.00 0.00 42.10 2.59
502 505 4.410228 TGGCTTCCTTCAGCATTATACTCT 59.590 41.667 0.00 0.00 42.10 3.24
503 506 4.994217 GGCTTCCTTCAGCATTATACTCTC 59.006 45.833 0.00 0.00 42.10 3.20
504 507 5.221621 GGCTTCCTTCAGCATTATACTCTCT 60.222 44.000 0.00 0.00 42.10 3.10
505 508 5.925969 GCTTCCTTCAGCATTATACTCTCTC 59.074 44.000 0.00 0.00 39.83 3.20
506 509 6.239289 GCTTCCTTCAGCATTATACTCTCTCT 60.239 42.308 0.00 0.00 39.83 3.10
507 510 6.647334 TCCTTCAGCATTATACTCTCTCTG 57.353 41.667 0.00 0.00 0.00 3.35
508 511 6.132658 TCCTTCAGCATTATACTCTCTCTGT 58.867 40.000 0.00 0.00 0.00 3.41
509 512 6.609212 TCCTTCAGCATTATACTCTCTCTGTT 59.391 38.462 0.00 0.00 0.00 3.16
510 513 6.922957 CCTTCAGCATTATACTCTCTCTGTTC 59.077 42.308 0.00 0.00 0.00 3.18
511 514 6.398234 TCAGCATTATACTCTCTCTGTTCC 57.602 41.667 0.00 0.00 0.00 3.62
512 515 6.132658 TCAGCATTATACTCTCTCTGTTCCT 58.867 40.000 0.00 0.00 0.00 3.36
513 516 7.290813 TCAGCATTATACTCTCTCTGTTCCTA 58.709 38.462 0.00 0.00 0.00 2.94
514 517 7.780271 TCAGCATTATACTCTCTCTGTTCCTAA 59.220 37.037 0.00 0.00 0.00 2.69
515 518 8.417106 CAGCATTATACTCTCTCTGTTCCTAAA 58.583 37.037 0.00 0.00 0.00 1.85
516 519 9.153479 AGCATTATACTCTCTCTGTTCCTAAAT 57.847 33.333 0.00 0.00 0.00 1.40
524 527 9.041354 ACTCTCTCTGTTCCTAAATATTTGTCT 57.959 33.333 11.05 0.00 0.00 3.41
525 528 9.883142 CTCTCTCTGTTCCTAAATATTTGTCTT 57.117 33.333 11.05 0.00 0.00 3.01
559 562 9.959721 ATTTTAACAAGTGACTACATATGGAGT 57.040 29.630 20.96 20.96 0.00 3.85
564 567 9.959721 AACAAGTGACTACATATGGAGTAAAAT 57.040 29.630 20.86 8.81 0.00 1.82
565 568 9.383519 ACAAGTGACTACATATGGAGTAAAATG 57.616 33.333 20.86 16.56 0.00 2.32
566 569 9.599866 CAAGTGACTACATATGGAGTAAAATGA 57.400 33.333 20.86 0.00 0.00 2.57
578 581 8.856490 ATGGAGTAAAATGAATGAATTTACGC 57.144 30.769 0.00 0.00 41.87 4.42
579 582 8.050778 TGGAGTAAAATGAATGAATTTACGCT 57.949 30.769 9.89 0.00 41.87 5.07
580 583 8.181573 TGGAGTAAAATGAATGAATTTACGCTC 58.818 33.333 9.89 0.00 41.87 5.03
581 584 8.398665 GGAGTAAAATGAATGAATTTACGCTCT 58.601 33.333 9.89 0.00 41.87 4.09
601 604 9.627395 ACGCTCTAAAATATGTCTACATACATC 57.373 33.333 4.98 0.00 41.15 3.06
602 605 9.077674 CGCTCTAAAATATGTCTACATACATCC 57.922 37.037 4.98 0.00 41.15 3.51
603 606 9.077674 GCTCTAAAATATGTCTACATACATCCG 57.922 37.037 4.98 0.00 41.15 4.18
616 619 4.806330 CATACATCCGTATGTGGTAGTCC 58.194 47.826 3.56 0.00 46.70 3.85
617 620 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
618 621 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
619 622 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
620 623 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
621 624 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
622 625 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
623 626 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
624 627 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
625 628 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
626 629 6.764085 CCGTATGTGGTAGTCCATTTGAAATA 59.236 38.462 0.00 0.00 46.20 1.40
627 630 7.444183 CCGTATGTGGTAGTCCATTTGAAATAT 59.556 37.037 0.00 0.00 46.20 1.28
628 631 8.495949 CGTATGTGGTAGTCCATTTGAAATATC 58.504 37.037 0.00 0.00 46.20 1.63
629 632 9.561069 GTATGTGGTAGTCCATTTGAAATATCT 57.439 33.333 0.00 0.00 46.20 1.98
632 635 9.967451 TGTGGTAGTCCATTTGAAATATCTAAA 57.033 29.630 0.00 0.00 46.20 1.85
656 659 9.908152 AAAAAGACAAATATTTAGAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
657 660 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
658 661 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
659 662 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
700 703 1.075525 ATACTCACCGGCCAGCCTA 60.076 57.895 0.00 0.00 0.00 3.93
701 704 0.471971 ATACTCACCGGCCAGCCTAT 60.472 55.000 0.00 0.00 0.00 2.57
702 705 0.689745 TACTCACCGGCCAGCCTATT 60.690 55.000 0.00 0.00 0.00 1.73
774 815 4.265056 ACCGCCGGCCTGTTTCTT 62.265 61.111 23.46 0.00 0.00 2.52
775 816 2.983592 CCGCCGGCCTGTTTCTTT 60.984 61.111 23.46 0.00 0.00 2.52
776 817 2.561373 CGCCGGCCTGTTTCTTTC 59.439 61.111 23.46 0.00 0.00 2.62
777 818 1.966451 CGCCGGCCTGTTTCTTTCT 60.966 57.895 23.46 0.00 0.00 2.52
790 831 2.649331 TCTTTCTAAGTCGAAGCCCG 57.351 50.000 0.00 0.00 40.25 6.13
791 839 1.000145 CTTTCTAAGTCGAAGCCCGC 59.000 55.000 0.00 0.00 38.37 6.13
795 843 1.668101 CTAAGTCGAAGCCCGCCTCT 61.668 60.000 0.00 0.00 38.37 3.69
796 844 1.664321 TAAGTCGAAGCCCGCCTCTC 61.664 60.000 0.00 0.00 38.37 3.20
799 847 4.821589 CGAAGCCCGCCTCTCCAC 62.822 72.222 0.00 0.00 0.00 4.02
800 848 3.706373 GAAGCCCGCCTCTCCACA 61.706 66.667 0.00 0.00 0.00 4.17
801 849 3.672295 GAAGCCCGCCTCTCCACAG 62.672 68.421 0.00 0.00 0.00 3.66
819 874 2.673200 GGCCACAGCTCATCTCCCA 61.673 63.158 0.00 0.00 39.73 4.37
820 875 1.153208 GCCACAGCTCATCTCCCAG 60.153 63.158 0.00 0.00 35.50 4.45
821 876 1.153208 CCACAGCTCATCTCCCAGC 60.153 63.158 0.00 0.00 35.73 4.85
822 877 1.153208 CACAGCTCATCTCCCAGCC 60.153 63.158 0.00 0.00 36.17 4.85
823 878 2.108566 CAGCTCATCTCCCAGCCG 59.891 66.667 0.00 0.00 36.17 5.52
824 879 3.859414 AGCTCATCTCCCAGCCGC 61.859 66.667 0.00 0.00 36.17 6.53
825 880 4.166888 GCTCATCTCCCAGCCGCA 62.167 66.667 0.00 0.00 0.00 5.69
826 881 2.108566 CTCATCTCCCAGCCGCAG 59.891 66.667 0.00 0.00 0.00 5.18
827 882 4.166888 TCATCTCCCAGCCGCAGC 62.167 66.667 0.00 0.00 40.32 5.25
954 1010 1.675219 GTTAGAGCCAACCACCGGA 59.325 57.895 9.46 0.00 0.00 5.14
1056 1112 3.522731 CCCTCTCTCCTCGCCGTG 61.523 72.222 0.00 0.00 0.00 4.94
1092 1148 3.800863 TCGCTCGAGCTGACCGAC 61.801 66.667 32.88 4.10 39.32 4.79
1240 1296 1.074395 CCTAACCCTCTCCTCCCCC 60.074 68.421 0.00 0.00 0.00 5.40
1275 1331 5.478407 CCCTTTCGATTTGTAGGCATTTTT 58.522 37.500 0.00 0.00 0.00 1.94
1285 1341 5.772825 TGTAGGCATTTTTGGAGCATATC 57.227 39.130 0.00 0.00 0.00 1.63
1291 1347 1.217916 TTTTGGAGCATATCGGGGGA 58.782 50.000 0.00 0.00 0.00 4.81
1776 1832 1.740025 CAGAGGATTTTTCGGTCTGGC 59.260 52.381 0.00 0.00 32.59 4.85
1833 1890 6.452494 TTTTTCCGTGATACTTGGTTTTGA 57.548 33.333 0.00 0.00 0.00 2.69
1842 1899 5.303333 TGATACTTGGTTTTGACCCCTTTTC 59.697 40.000 0.00 0.00 0.00 2.29
1852 1909 6.563222 TTTGACCCCTTTTCGTATTTACTG 57.437 37.500 0.00 0.00 0.00 2.74
1858 1915 6.598064 ACCCCTTTTCGTATTTACTGATGAAG 59.402 38.462 0.00 0.00 0.00 3.02
1888 1945 7.837689 TGTACAAGGGATAGTGTATCAGTTAGT 59.162 37.037 0.00 0.00 36.91 2.24
1893 1950 7.351952 AGGGATAGTGTATCAGTTAGTGTACA 58.648 38.462 0.00 0.00 36.91 2.90
1950 2007 8.873215 AATACTCAATAGACTGATAACAACCG 57.127 34.615 0.00 0.00 0.00 4.44
1954 2011 0.252197 AGACTGATAACAACCGGGCC 59.748 55.000 6.32 0.00 0.00 5.80
1955 2012 0.252197 GACTGATAACAACCGGGCCT 59.748 55.000 6.32 0.00 0.00 5.19
2125 2186 6.238786 CGCATACTTCTTCCTCAGTACTGTAT 60.239 42.308 21.99 6.86 0.00 2.29
2226 2287 1.514003 TATTTTCGGCACAGCGTTCA 58.486 45.000 0.00 0.00 0.00 3.18
2248 2333 6.186957 TCAATGGTATTACATGAACTGCCTT 58.813 36.000 0.00 0.00 0.00 4.35
2249 2334 6.663093 TCAATGGTATTACATGAACTGCCTTT 59.337 34.615 0.00 0.00 0.00 3.11
2250 2335 6.699575 ATGGTATTACATGAACTGCCTTTC 57.300 37.500 0.00 0.00 0.00 2.62
2251 2336 5.815581 TGGTATTACATGAACTGCCTTTCT 58.184 37.500 0.00 0.00 0.00 2.52
2252 2337 6.245408 TGGTATTACATGAACTGCCTTTCTT 58.755 36.000 0.00 0.00 0.00 2.52
2253 2338 7.398829 TGGTATTACATGAACTGCCTTTCTTA 58.601 34.615 0.00 0.00 0.00 2.10
2254 2339 8.052748 TGGTATTACATGAACTGCCTTTCTTAT 58.947 33.333 0.00 0.00 0.00 1.73
2255 2340 8.903820 GGTATTACATGAACTGCCTTTCTTATT 58.096 33.333 0.00 0.00 0.00 1.40
2311 2396 9.753669 GTTTCTTTTTGTTGTGATTTACTTTGG 57.246 29.630 0.00 0.00 0.00 3.28
2327 2412 9.893305 ATTTACTTTGGATTCTGTTACTTTTCG 57.107 29.630 0.00 0.00 0.00 3.46
2330 2415 5.607119 TTGGATTCTGTTACTTTTCGAGC 57.393 39.130 0.00 0.00 0.00 5.03
2335 2420 3.390135 TCTGTTACTTTTCGAGCTGTGG 58.610 45.455 0.00 0.00 0.00 4.17
2347 2433 5.353394 TCGAGCTGTGGGAATTTTAGTAT 57.647 39.130 0.00 0.00 0.00 2.12
2439 2533 6.262496 TGACTACTTCCATGGTATCTTACTCG 59.738 42.308 12.58 0.00 0.00 4.18
2540 2634 2.683211 ATTCTTTGGTGCCCTCTTGT 57.317 45.000 0.00 0.00 0.00 3.16
2552 2646 4.072131 TGCCCTCTTGTGTTTTACTGATC 58.928 43.478 0.00 0.00 0.00 2.92
2571 2665 5.614308 TGATCATATCGTCATTTCCAAGCT 58.386 37.500 0.00 0.00 0.00 3.74
2689 2783 6.595716 CCCAAGAACTAAGTGGTCTATTTCAG 59.404 42.308 0.00 0.00 42.96 3.02
2712 2806 7.174253 TCAGTACCTTGCTGTAAGTTATTTTGG 59.826 37.037 4.81 0.00 35.30 3.28
2723 2817 1.746787 GTTATTTTGGCCCCTACCACG 59.253 52.381 0.00 0.00 40.19 4.94
2808 2904 9.111519 TCATATGAAGCTTATGGTATCCCTTTA 57.888 33.333 1.98 0.00 0.00 1.85
2814 2913 9.178758 GAAGCTTATGGTATCCCTTTATTATGG 57.821 37.037 0.00 0.00 0.00 2.74
2825 2924 6.601332 TCCCTTTATTATGGTCACATTCTCC 58.399 40.000 0.00 0.00 38.53 3.71
2874 2973 9.927081 AGTATGGAAAGGAGAATATGACAAAAT 57.073 29.630 0.00 0.00 0.00 1.82
2929 3029 3.072184 AGGTGGCATATCTGAACTGATCC 59.928 47.826 0.00 0.00 0.00 3.36
2953 3053 6.703165 CCTCTAAAATAATTTGGAATGCAGCC 59.297 38.462 0.00 0.00 35.86 4.85
3030 3132 3.664025 GCATCGTCACCTTTTCTTTTTCG 59.336 43.478 0.00 0.00 0.00 3.46
3031 3133 3.328237 TCGTCACCTTTTCTTTTTCGC 57.672 42.857 0.00 0.00 0.00 4.70
3032 3134 2.678836 TCGTCACCTTTTCTTTTTCGCA 59.321 40.909 0.00 0.00 0.00 5.10
3035 3137 4.259253 CGTCACCTTTTCTTTTTCGCAAAC 60.259 41.667 0.00 0.00 0.00 2.93
3036 3138 4.862574 GTCACCTTTTCTTTTTCGCAAACT 59.137 37.500 0.00 0.00 0.00 2.66
3037 3139 4.862018 TCACCTTTTCTTTTTCGCAAACTG 59.138 37.500 0.00 0.00 0.00 3.16
3038 3140 4.862018 CACCTTTTCTTTTTCGCAAACTGA 59.138 37.500 0.00 0.00 0.00 3.41
3040 3142 5.576774 ACCTTTTCTTTTTCGCAAACTGAAG 59.423 36.000 0.00 0.00 0.00 3.02
3041 3143 5.804979 CCTTTTCTTTTTCGCAAACTGAAGA 59.195 36.000 0.00 0.00 0.00 2.87
3043 3145 6.626199 TTTCTTTTTCGCAAACTGAAGAAC 57.374 33.333 0.00 0.00 34.11 3.01
3045 3147 5.704888 TCTTTTTCGCAAACTGAAGAACAA 58.295 33.333 0.00 0.00 0.00 2.83
3048 3150 6.771188 TTTTCGCAAACTGAAGAACAAAAA 57.229 29.167 0.00 0.00 0.00 1.94
3071 3177 6.645790 AACTATCACCCTACAAGTATACCG 57.354 41.667 0.00 0.00 0.00 4.02
3095 3201 5.591099 ACTTGCCTTCCATATTTAAATGCG 58.409 37.500 11.05 1.73 0.00 4.73
3111 3217 8.546597 TTTAAATGCGCAGATATGCTTATAGA 57.453 30.769 18.32 0.00 0.00 1.98
3199 3307 9.838339 ATAAATTATCTCTGTACCAACTTCAGG 57.162 33.333 0.00 0.00 0.00 3.86
3281 3398 5.167121 TGTTTGTGAATTGGTTTGACACTG 58.833 37.500 0.00 0.00 33.41 3.66
3285 3402 4.142271 TGTGAATTGGTTTGACACTGGTTC 60.142 41.667 0.00 0.00 33.41 3.62
3370 3490 3.005155 GCAAATCTCTTGTTTCAGTGGCT 59.995 43.478 0.00 0.00 0.00 4.75
3372 3492 5.278463 GCAAATCTCTTGTTTCAGTGGCTTA 60.278 40.000 0.00 0.00 0.00 3.09
3385 3505 2.158460 AGTGGCTTACCTTTCTTTGGCT 60.158 45.455 0.00 0.00 36.63 4.75
3417 3539 9.178758 AGAGATTTTGTCTGTTTACTTGTCTTT 57.821 29.630 0.00 0.00 37.29 2.52
3462 3614 8.893727 GTCTGCCTACATTATATTTTGAGTGTT 58.106 33.333 0.00 0.00 0.00 3.32
3463 3615 9.461312 TCTGCCTACATTATATTTTGAGTGTTT 57.539 29.630 0.00 0.00 0.00 2.83
3619 3771 3.930848 CCGTGCCTCGTAAGTTATTTTCT 59.069 43.478 0.00 0.00 37.94 2.52
3630 3782 9.760077 TCGTAAGTTATTTTCTGTTTTCTCTCT 57.240 29.630 0.00 0.00 39.48 3.10
3661 3813 8.390854 GCATATATCTGTTTATGCTGCAAATC 57.609 34.615 6.36 3.00 44.62 2.17
3662 3814 7.487189 GCATATATCTGTTTATGCTGCAAATCC 59.513 37.037 6.36 0.00 44.62 3.01
3663 3815 8.737175 CATATATCTGTTTATGCTGCAAATCCT 58.263 33.333 6.36 0.00 0.00 3.24
3664 3816 4.970662 TCTGTTTATGCTGCAAATCCTC 57.029 40.909 6.36 0.00 0.00 3.71
3665 3817 4.334552 TCTGTTTATGCTGCAAATCCTCA 58.665 39.130 6.36 1.24 0.00 3.86
3736 3892 5.874810 TGAGGTGCTAGCTATAAAGTTGTTG 59.125 40.000 17.23 0.00 0.00 3.33
3789 3945 9.928236 GCAAAAGTCATGCAAATTTAAGTTTAA 57.072 25.926 0.00 0.00 43.29 1.52
3819 3975 5.144359 CGCTAGGTGTTAATTGTGTGTTTC 58.856 41.667 0.00 0.00 0.00 2.78
3825 3981 3.047093 GTTAATTGTGTGTTTCGCCACC 58.953 45.455 0.00 0.00 34.35 4.61
3851 4007 2.801388 GCTTTTCTGACCAAAGCGC 58.199 52.632 10.15 0.00 44.94 5.92
3883 4039 4.340894 ACAGTTATGTGCACATTAAGCG 57.659 40.909 35.45 21.85 38.57 4.68
3890 4046 8.120465 AGTTATGTGCACATTAAGCGTAATTAC 58.880 33.333 35.45 13.32 37.76 1.89
3891 4047 5.864628 TGTGCACATTAAGCGTAATTACA 57.135 34.783 17.42 3.94 33.85 2.41
3892 4048 5.863898 TGTGCACATTAAGCGTAATTACAG 58.136 37.500 17.42 9.24 33.85 2.74
3895 4051 4.035208 GCACATTAAGCGTAATTACAGGCT 59.965 41.667 15.67 13.16 41.19 4.58
3962 4118 1.530323 TAGGCGCTCCTTTTTCAACC 58.470 50.000 7.64 0.00 40.66 3.77
4021 4181 8.671028 GTTTCTGAAGTTGTACTTTACCAAAGA 58.329 33.333 5.69 0.00 38.80 2.52
4035 4195 2.723273 CCAAAGATCTGGTTGGGGTAC 58.277 52.381 15.78 0.00 40.59 3.34
4085 4247 0.166814 GCTCAGTTTGCCGATGTCAC 59.833 55.000 0.00 0.00 0.00 3.67
4190 4353 8.603181 GTTTGTTCAGTTTGCTTGTCAATATTT 58.397 29.630 0.00 0.00 34.12 1.40
4239 4402 7.261688 ACCTGTGGGTAAGTTATAGCTTTAA 57.738 36.000 7.17 0.00 45.32 1.52
4309 4590 6.392625 TTCAGTAATAATCAGTCCTCCTCG 57.607 41.667 0.00 0.00 0.00 4.63
4324 4609 2.170607 CTCCTCGTTTCCATGTACCCAT 59.829 50.000 0.00 0.00 0.00 4.00
4326 4611 3.386726 TCCTCGTTTCCATGTACCCATAG 59.613 47.826 0.00 0.00 0.00 2.23
4387 4672 0.833949 GTCCCTCTCCATCCAAGTCC 59.166 60.000 0.00 0.00 0.00 3.85
4470 4756 4.158394 GCTTATGCTGAACATTTTCCCTGA 59.842 41.667 0.00 0.00 40.38 3.86
4513 4812 7.905493 GCATGTTAATCTACTCAGTTTACTTGC 59.095 37.037 0.00 0.00 0.00 4.01
4544 4843 5.808042 ACAGCTATACATTGAGCTTTGTG 57.192 39.130 7.84 0.91 46.99 3.33
4545 4844 5.248640 ACAGCTATACATTGAGCTTTGTGT 58.751 37.500 7.84 6.21 46.99 3.72
4546 4845 5.122869 ACAGCTATACATTGAGCTTTGTGTG 59.877 40.000 8.52 0.00 46.99 3.82
4549 4848 7.836799 AGCTATACATTGAGCTTTGTGTGCTC 61.837 42.308 8.58 8.58 46.99 4.26
4637 4996 7.943079 TTGGTGTGAAGATGTCATGAAATAT 57.057 32.000 0.00 0.00 38.90 1.28
4646 5005 6.586344 AGATGTCATGAAATATGTTCGGTCT 58.414 36.000 0.00 0.00 0.00 3.85
4679 5041 4.627467 CAGTTATCTGTCCAACCTTTCTCG 59.373 45.833 0.00 0.00 36.97 4.04
4713 5075 3.253188 TCAGCTGCAAAATGGTTGTACTC 59.747 43.478 9.47 0.00 0.00 2.59
4763 5126 5.446473 CGCTTTCTCTGATGTGGTGTAATTC 60.446 44.000 0.00 0.00 0.00 2.17
4783 5146 2.102420 TCACATAGTTACCCCGATGCAG 59.898 50.000 0.00 0.00 0.00 4.41
4799 5162 4.975502 CGATGCAGCAACAGAAAGTTTAAA 59.024 37.500 1.53 0.00 38.74 1.52
4803 5166 7.002816 TGCAGCAACAGAAAGTTTAAATTTG 57.997 32.000 0.00 0.00 38.74 2.32
4943 5306 0.819259 ACAGGTTTGTGTGATGCGCT 60.819 50.000 9.73 0.00 35.83 5.92
4964 5327 6.345329 GCGCTTTTCAGAATTGAACTTTCTTC 60.345 38.462 0.00 0.00 42.79 2.87
4974 5337 6.817765 ATTGAACTTTCTTCGATGGCTTAA 57.182 33.333 0.00 0.00 0.00 1.85
4977 5340 6.435428 TGAACTTTCTTCGATGGCTTAAAAC 58.565 36.000 0.00 0.00 0.00 2.43
4982 5345 5.801350 TCTTCGATGGCTTAAAACATCTG 57.199 39.130 13.87 9.36 40.93 2.90
5052 5417 5.047021 AGGGGATCATGTGTGTATATTCGAG 60.047 44.000 0.00 0.00 0.00 4.04
5058 5423 3.568443 TGTGTGTATATTCGAGGGGCTA 58.432 45.455 0.00 0.00 0.00 3.93
5071 5436 4.039973 TCGAGGGGCTACCAATGTATTAAG 59.960 45.833 0.97 0.00 43.89 1.85
5085 5450 9.543783 CCAATGTATTAAGTACTAGGGAAACTC 57.456 37.037 0.00 0.00 34.27 3.01
5124 5490 5.359194 ACATTATCCCGAGTGAAGAATGT 57.641 39.130 0.00 0.00 33.48 2.71
5137 5503 6.449698 AGTGAAGAATGTGCATTAGTTTTGG 58.550 36.000 0.00 0.00 0.00 3.28
5138 5504 6.265196 AGTGAAGAATGTGCATTAGTTTTGGA 59.735 34.615 0.00 0.00 0.00 3.53
5168 5534 4.371624 TCATTCTTCTTTGGGAGCTTCA 57.628 40.909 0.00 0.00 0.00 3.02
5182 5548 1.625818 AGCTTCACCCTGAACCTGTAG 59.374 52.381 0.00 0.00 32.21 2.74
5215 5581 4.491676 CTTGCTAAGCTGATGCAAAACAT 58.508 39.130 17.75 0.00 44.49 2.71
5218 5584 4.240096 GCTAAGCTGATGCAAAACATTGT 58.760 39.130 0.00 0.00 39.84 2.71
5219 5585 4.325472 GCTAAGCTGATGCAAAACATTGTC 59.675 41.667 0.00 0.00 39.84 3.18
5222 5588 2.598589 CTGATGCAAAACATTGTCGGG 58.401 47.619 0.00 0.00 39.84 5.14
5261 5755 3.391506 ACAGCTTTCTTTGGGATTTGC 57.608 42.857 0.00 0.00 0.00 3.68
5263 5757 3.389002 ACAGCTTTCTTTGGGATTTGCTT 59.611 39.130 0.00 0.00 0.00 3.91
5266 5760 3.499537 GCTTTCTTTGGGATTTGCTTTGG 59.500 43.478 0.00 0.00 0.00 3.28
5281 5775 8.962884 ATTTGCTTTGGTGAAATTATAATCCC 57.037 30.769 0.00 0.00 0.00 3.85
5293 5787 8.750298 TGAAATTATAATCCCGACTAGATCTCC 58.250 37.037 0.00 0.00 0.00 3.71
5299 5793 1.393603 CCGACTAGATCTCCAGTGCA 58.606 55.000 0.00 0.00 0.00 4.57
5303 5797 4.380339 CCGACTAGATCTCCAGTGCATATG 60.380 50.000 0.00 0.00 0.00 1.78
5304 5798 4.493547 GACTAGATCTCCAGTGCATATGC 58.506 47.826 21.09 21.09 42.50 3.14
5337 6149 8.408043 AATCCTGACAACAAGATTTTGTATCA 57.592 30.769 1.50 8.53 46.54 2.15
5349 6161 7.902920 AGATTTTGTATCATAACCCTGCAAT 57.097 32.000 0.00 0.00 0.00 3.56
5425 6237 3.383185 AGGCTCTAGCACATAACTGAGTC 59.617 47.826 4.07 0.00 44.36 3.36
5427 6239 3.793801 GCTCTAGCACATAACTGAGTCCG 60.794 52.174 0.00 0.00 41.59 4.79
5512 6328 7.549147 TGGTACAACATAAGTAGGAGAAAGT 57.451 36.000 0.00 0.00 31.92 2.66
5513 6329 7.609056 TGGTACAACATAAGTAGGAGAAAGTC 58.391 38.462 0.00 0.00 31.92 3.01
5514 6330 7.453752 TGGTACAACATAAGTAGGAGAAAGTCT 59.546 37.037 0.00 0.00 31.92 3.24
5516 6332 6.166982 ACAACATAAGTAGGAGAAAGTCTGC 58.833 40.000 0.00 0.00 34.82 4.26
5517 6333 6.166279 CAACATAAGTAGGAGAAAGTCTGCA 58.834 40.000 0.00 0.00 37.29 4.41
5518 6334 6.552445 ACATAAGTAGGAGAAAGTCTGCAT 57.448 37.500 0.00 0.00 37.29 3.96
5520 6336 6.155221 ACATAAGTAGGAGAAAGTCTGCATCA 59.845 38.462 0.00 0.00 37.29 3.07
5522 6338 2.777832 AGGAGAAAGTCTGCATCACC 57.222 50.000 0.00 0.00 37.29 4.02
5523 6339 1.280421 AGGAGAAAGTCTGCATCACCC 59.720 52.381 0.00 0.00 37.29 4.61
5524 6340 1.680249 GGAGAAAGTCTGCATCACCCC 60.680 57.143 0.00 0.00 34.73 4.95
5525 6341 1.280421 GAGAAAGTCTGCATCACCCCT 59.720 52.381 0.00 0.00 0.00 4.79
5551 6367 2.403259 CCACCGCAAAATTCAACTTCC 58.597 47.619 0.00 0.00 0.00 3.46
5552 6368 2.223923 CCACCGCAAAATTCAACTTCCA 60.224 45.455 0.00 0.00 0.00 3.53
5630 6446 1.866601 TCGTAGAACGTTGACTCGTCA 59.133 47.619 5.00 0.00 43.38 4.35
5701 6517 0.175302 CCAGCCACAGCAACAAACAA 59.825 50.000 0.00 0.00 43.56 2.83
5821 6637 2.618709 GGCCTGCATAGACATTGGTTAC 59.381 50.000 0.00 0.00 0.00 2.50
5823 6639 3.694072 GCCTGCATAGACATTGGTTACAA 59.306 43.478 0.00 0.00 41.59 2.41
5824 6640 4.157656 GCCTGCATAGACATTGGTTACAAA 59.842 41.667 0.00 0.00 40.55 2.83
5825 6641 5.677091 GCCTGCATAGACATTGGTTACAAAG 60.677 44.000 0.00 0.00 40.55 2.77
5845 6666 5.966742 AAGTTAGAAGATGTGAAAAGGCC 57.033 39.130 0.00 0.00 0.00 5.19
5855 6676 3.571590 TGTGAAAAGGCCAAAGGTGTAT 58.428 40.909 5.01 0.00 0.00 2.29
5856 6677 3.572255 TGTGAAAAGGCCAAAGGTGTATC 59.428 43.478 5.01 0.00 0.00 2.24
5861 6682 5.514500 AAAGGCCAAAGGTGTATCTAGAA 57.486 39.130 5.01 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.367599 GCGCTTGCTCTGCTCTGATT 61.368 55.000 0.00 0.00 35.07 2.57
1 2 1.814586 GCGCTTGCTCTGCTCTGAT 60.815 57.895 0.00 0.00 35.07 2.90
2 3 2.433838 GCGCTTGCTCTGCTCTGA 60.434 61.111 0.00 0.00 35.07 3.27
3 4 3.851077 CGCGCTTGCTCTGCTCTG 61.851 66.667 5.56 0.00 36.08 3.35
4 5 4.370066 ACGCGCTTGCTCTGCTCT 62.370 61.111 5.73 0.00 36.08 4.09
35 37 1.002201 TGGCAAGTTAAATCGGACCGA 59.998 47.619 20.85 20.85 41.13 4.69
37 39 2.752903 ACATGGCAAGTTAAATCGGACC 59.247 45.455 0.00 0.00 0.00 4.46
39 41 3.680490 TGACATGGCAAGTTAAATCGGA 58.320 40.909 0.00 0.00 0.00 4.55
56 58 3.627395 ACCTTGTGAGACTTGTTGACA 57.373 42.857 0.00 0.00 0.00 3.58
57 59 3.938963 TGAACCTTGTGAGACTTGTTGAC 59.061 43.478 0.00 0.00 0.00 3.18
59 61 4.963276 TTGAACCTTGTGAGACTTGTTG 57.037 40.909 0.00 0.00 0.00 3.33
65 67 4.750598 GGTCTACTTTGAACCTTGTGAGAC 59.249 45.833 0.00 0.00 0.00 3.36
95 97 1.981256 ATCGGCACACCAAACTTTCT 58.019 45.000 0.00 0.00 34.57 2.52
100 102 2.500509 TTGAAATCGGCACACCAAAC 57.499 45.000 0.00 0.00 34.57 2.93
111 113 8.454106 ACCATGAACTTCTAATCTTTGAAATCG 58.546 33.333 0.00 0.00 0.00 3.34
129 131 6.681777 ACAAAAGCTAAATCAGACCATGAAC 58.318 36.000 0.00 0.00 42.53 3.18
131 133 6.899393 AACAAAAGCTAAATCAGACCATGA 57.101 33.333 0.00 0.00 43.70 3.07
183 185 4.699637 ACAAACCATGAACTTGTAGACGA 58.300 39.130 0.00 0.00 31.63 4.20
198 200 5.780984 ACGGAAAAAGTACAAAACAAACCA 58.219 33.333 0.00 0.00 0.00 3.67
204 206 7.488792 ACATGGTAAACGGAAAAAGTACAAAAC 59.511 33.333 0.00 0.00 0.00 2.43
209 211 6.204495 TGGTACATGGTAAACGGAAAAAGTAC 59.796 38.462 0.00 0.00 0.00 2.73
210 212 6.204495 GTGGTACATGGTAAACGGAAAAAGTA 59.796 38.462 0.00 0.00 44.52 2.24
218 220 4.427312 GAGTAGTGGTACATGGTAAACGG 58.573 47.826 0.00 0.00 44.52 4.44
231 233 4.332683 TGAGACATTAGGGAGTAGTGGT 57.667 45.455 0.00 0.00 0.00 4.16
257 259 7.346751 TCAACATAAATTGGCTTTATCCCTC 57.653 36.000 0.00 0.00 37.84 4.30
273 275 1.003696 TGTGGCCCGTGATCAACATAA 59.996 47.619 0.00 0.00 0.00 1.90
275 277 0.251121 TTGTGGCCCGTGATCAACAT 60.251 50.000 0.00 0.00 0.00 2.71
276 278 1.149401 TTGTGGCCCGTGATCAACA 59.851 52.632 0.00 0.00 0.00 3.33
277 279 0.889186 AGTTGTGGCCCGTGATCAAC 60.889 55.000 0.00 6.60 38.69 3.18
327 329 4.019321 TCCTGGTCTTCATTCCTAGTTTGG 60.019 45.833 0.00 0.00 0.00 3.28
332 334 3.037549 AGCTCCTGGTCTTCATTCCTAG 58.962 50.000 0.00 0.00 0.00 3.02
333 335 3.121929 AGCTCCTGGTCTTCATTCCTA 57.878 47.619 0.00 0.00 0.00 2.94
336 338 5.091261 TCTTTAGCTCCTGGTCTTCATTC 57.909 43.478 0.00 0.00 0.00 2.67
337 339 5.707066 ATCTTTAGCTCCTGGTCTTCATT 57.293 39.130 0.00 0.00 0.00 2.57
340 342 6.879400 TCTTTATCTTTAGCTCCTGGTCTTC 58.121 40.000 0.00 0.00 0.00 2.87
341 343 6.875972 TCTTTATCTTTAGCTCCTGGTCTT 57.124 37.500 0.00 0.00 0.00 3.01
342 344 6.875972 TTCTTTATCTTTAGCTCCTGGTCT 57.124 37.500 0.00 0.00 0.00 3.85
377 379 3.544834 GCAGCTAATGTTGACGCACATAG 60.545 47.826 0.00 0.00 36.30 2.23
380 383 0.516877 GCAGCTAATGTTGACGCACA 59.483 50.000 0.00 0.00 0.00 4.57
382 385 0.516877 GTGCAGCTAATGTTGACGCA 59.483 50.000 0.00 0.00 0.00 5.24
387 390 1.442769 AGGTCGTGCAGCTAATGTTG 58.557 50.000 0.00 0.00 0.00 3.33
394 397 5.699097 TTATTTTTAAAGGTCGTGCAGCT 57.301 34.783 0.00 0.00 0.00 4.24
397 400 9.745880 TGTAATTTTATTTTTAAAGGTCGTGCA 57.254 25.926 0.00 0.00 0.00 4.57
434 437 7.805071 CGTCAAAAAGATCAAAACTAGAGCAAT 59.195 33.333 0.00 0.00 0.00 3.56
444 447 6.365789 GGATGCAATCGTCAAAAAGATCAAAA 59.634 34.615 0.00 0.00 46.86 2.44
453 456 4.674475 CATCATGGATGCAATCGTCAAAA 58.326 39.130 0.00 0.00 46.86 2.44
471 474 0.332293 TGAAGGAAGCCATGGCATCA 59.668 50.000 35.51 26.64 44.88 3.07
472 475 1.030457 CTGAAGGAAGCCATGGCATC 58.970 55.000 37.18 33.26 44.88 3.91
473 476 1.041447 GCTGAAGGAAGCCATGGCAT 61.041 55.000 37.18 27.80 44.88 4.40
474 477 1.679977 GCTGAAGGAAGCCATGGCA 60.680 57.895 37.18 14.88 44.88 4.92
475 478 1.041447 ATGCTGAAGGAAGCCATGGC 61.041 55.000 30.12 30.12 42.83 4.40
476 479 1.481871 AATGCTGAAGGAAGCCATGG 58.518 50.000 7.63 7.63 42.83 3.66
477 480 5.068636 AGTATAATGCTGAAGGAAGCCATG 58.931 41.667 0.00 0.00 42.83 3.66
478 481 5.072872 AGAGTATAATGCTGAAGGAAGCCAT 59.927 40.000 0.00 0.00 42.83 4.40
479 482 4.410228 AGAGTATAATGCTGAAGGAAGCCA 59.590 41.667 0.00 0.00 42.83 4.75
480 483 4.967036 AGAGTATAATGCTGAAGGAAGCC 58.033 43.478 0.00 0.00 42.83 4.35
481 484 5.852827 AGAGAGTATAATGCTGAAGGAAGC 58.147 41.667 0.00 0.00 43.82 3.86
482 485 7.147312 CAGAGAGAGTATAATGCTGAAGGAAG 58.853 42.308 0.00 0.00 0.00 3.46
483 486 6.609212 ACAGAGAGAGTATAATGCTGAAGGAA 59.391 38.462 0.00 0.00 0.00 3.36
484 487 6.132658 ACAGAGAGAGTATAATGCTGAAGGA 58.867 40.000 0.00 0.00 0.00 3.36
485 488 6.403866 ACAGAGAGAGTATAATGCTGAAGG 57.596 41.667 0.00 0.00 0.00 3.46
486 489 6.922957 GGAACAGAGAGAGTATAATGCTGAAG 59.077 42.308 0.00 0.00 0.00 3.02
487 490 6.609212 AGGAACAGAGAGAGTATAATGCTGAA 59.391 38.462 0.00 0.00 0.00 3.02
488 491 6.132658 AGGAACAGAGAGAGTATAATGCTGA 58.867 40.000 0.00 0.00 0.00 4.26
489 492 6.403866 AGGAACAGAGAGAGTATAATGCTG 57.596 41.667 0.00 0.00 0.00 4.41
490 493 8.540507 TTTAGGAACAGAGAGAGTATAATGCT 57.459 34.615 0.00 0.00 0.00 3.79
498 501 9.041354 AGACAAATATTTAGGAACAGAGAGAGT 57.959 33.333 0.00 0.00 0.00 3.24
499 502 9.883142 AAGACAAATATTTAGGAACAGAGAGAG 57.117 33.333 0.00 0.00 0.00 3.20
533 536 9.959721 ACTCCATATGTAGTCACTTGTTAAAAT 57.040 29.630 1.24 0.00 0.00 1.82
538 541 9.959721 ATTTTACTCCATATGTAGTCACTTGTT 57.040 29.630 3.94 0.00 0.00 2.83
539 542 9.383519 CATTTTACTCCATATGTAGTCACTTGT 57.616 33.333 3.94 0.00 0.00 3.16
540 543 9.599866 TCATTTTACTCCATATGTAGTCACTTG 57.400 33.333 3.94 0.64 0.00 3.16
552 555 9.944663 GCGTAAATTCATTCATTTTACTCCATA 57.055 29.630 0.00 0.00 34.95 2.74
553 556 8.686334 AGCGTAAATTCATTCATTTTACTCCAT 58.314 29.630 0.00 0.00 34.95 3.41
554 557 8.050778 AGCGTAAATTCATTCATTTTACTCCA 57.949 30.769 0.00 0.00 34.95 3.86
555 558 8.398665 AGAGCGTAAATTCATTCATTTTACTCC 58.601 33.333 0.00 0.00 34.95 3.85
575 578 9.627395 GATGTATGTAGACATATTTTAGAGCGT 57.373 33.333 5.69 0.00 40.18 5.07
576 579 9.077674 GGATGTATGTAGACATATTTTAGAGCG 57.922 37.037 5.69 0.00 40.18 5.03
577 580 9.077674 CGGATGTATGTAGACATATTTTAGAGC 57.922 37.037 5.69 0.00 40.18 4.09
595 598 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
596 599 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
630 633 9.908152 CCTCCGTTTCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
631 634 8.520351 CCCTCCGTTTCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
632 635 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
633 636 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
634 637 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
635 638 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
636 639 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
637 640 7.985752 ACTACTCCCTCCGTTTCTAAATATTTG 59.014 37.037 11.05 1.65 0.00 2.32
638 641 8.087303 ACTACTCCCTCCGTTTCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
639 642 7.672122 ACTACTCCCTCCGTTTCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
640 643 7.040823 CGTACTACTCCCTCCGTTTCTAAATAT 60.041 40.741 0.00 0.00 0.00 1.28
641 644 6.260936 CGTACTACTCCCTCCGTTTCTAAATA 59.739 42.308 0.00 0.00 0.00 1.40
642 645 5.067023 CGTACTACTCCCTCCGTTTCTAAAT 59.933 44.000 0.00 0.00 0.00 1.40
643 646 4.396166 CGTACTACTCCCTCCGTTTCTAAA 59.604 45.833 0.00 0.00 0.00 1.85
644 647 3.941483 CGTACTACTCCCTCCGTTTCTAA 59.059 47.826 0.00 0.00 0.00 2.10
645 648 3.055094 ACGTACTACTCCCTCCGTTTCTA 60.055 47.826 0.00 0.00 0.00 2.10
646 649 2.290577 ACGTACTACTCCCTCCGTTTCT 60.291 50.000 0.00 0.00 0.00 2.52
647 650 2.087646 ACGTACTACTCCCTCCGTTTC 58.912 52.381 0.00 0.00 0.00 2.78
648 651 2.206576 ACGTACTACTCCCTCCGTTT 57.793 50.000 0.00 0.00 0.00 3.60
649 652 3.567478 ATACGTACTACTCCCTCCGTT 57.433 47.619 0.00 0.00 0.00 4.44
650 653 3.567478 AATACGTACTACTCCCTCCGT 57.433 47.619 0.00 0.00 0.00 4.69
651 654 4.498682 CCAAAATACGTACTACTCCCTCCG 60.499 50.000 0.00 0.00 0.00 4.63
652 655 4.202192 CCCAAAATACGTACTACTCCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
653 656 4.738839 GCCCAAAATACGTACTACTCCCTC 60.739 50.000 0.00 0.00 0.00 4.30
654 657 3.133542 GCCCAAAATACGTACTACTCCCT 59.866 47.826 0.00 0.00 0.00 4.20
655 658 3.461061 GCCCAAAATACGTACTACTCCC 58.539 50.000 0.00 0.00 0.00 4.30
656 659 3.118665 TGGCCCAAAATACGTACTACTCC 60.119 47.826 0.00 0.00 0.00 3.85
657 660 4.127566 TGGCCCAAAATACGTACTACTC 57.872 45.455 0.00 0.00 0.00 2.59
658 661 4.448210 CATGGCCCAAAATACGTACTACT 58.552 43.478 0.00 0.00 0.00 2.57
659 662 3.002965 GCATGGCCCAAAATACGTACTAC 59.997 47.826 0.00 0.00 0.00 2.73
700 703 4.141574 TGAGGCCCGCTAAACACTAATAAT 60.142 41.667 0.00 0.00 0.00 1.28
701 704 3.198200 TGAGGCCCGCTAAACACTAATAA 59.802 43.478 0.00 0.00 0.00 1.40
702 705 2.767394 TGAGGCCCGCTAAACACTAATA 59.233 45.455 0.00 0.00 0.00 0.98
774 815 1.217244 GGCGGGCTTCGACTTAGAA 59.783 57.895 4.34 0.00 45.10 2.10
775 816 2.890371 GGCGGGCTTCGACTTAGA 59.110 61.111 4.34 0.00 45.10 2.10
791 839 2.667418 CTGTGGCCTGTGGAGAGG 59.333 66.667 3.32 0.00 36.03 3.69
795 843 2.189191 GATGAGCTGTGGCCTGTGGA 62.189 60.000 3.32 0.00 39.73 4.02
796 844 1.748122 GATGAGCTGTGGCCTGTGG 60.748 63.158 3.32 0.00 39.73 4.17
799 847 1.153208 GGAGATGAGCTGTGGCCTG 60.153 63.158 3.32 0.00 39.73 4.85
800 848 2.373707 GGGAGATGAGCTGTGGCCT 61.374 63.158 3.32 0.00 39.73 5.19
801 849 2.191641 GGGAGATGAGCTGTGGCC 59.808 66.667 0.00 0.00 39.73 5.36
802 850 1.153208 CTGGGAGATGAGCTGTGGC 60.153 63.158 0.00 0.00 39.06 5.01
803 851 1.153208 GCTGGGAGATGAGCTGTGG 60.153 63.158 0.00 0.00 32.12 4.17
1092 1148 1.737735 TCATCTGCGAGGCGTGTTG 60.738 57.895 0.00 0.00 0.00 3.33
1240 1296 1.626825 TCGAAAGGGGAAACAGGTAGG 59.373 52.381 0.00 0.00 0.00 3.18
1248 1304 3.086282 GCCTACAAATCGAAAGGGGAAA 58.914 45.455 0.00 0.00 0.00 3.13
1275 1331 2.217038 GCTCCCCCGATATGCTCCA 61.217 63.158 0.00 0.00 0.00 3.86
1291 1347 4.488911 ATCAGGGGAGAGCCGGCT 62.489 66.667 33.48 33.48 33.83 5.52
1788 1844 1.472728 CGTATACTCACCCTGGGTTGC 60.473 57.143 17.76 3.91 30.82 4.17
1833 1890 6.057321 TCATCAGTAAATACGAAAAGGGGT 57.943 37.500 0.00 0.00 0.00 4.95
1852 1909 8.204836 ACACTATCCCTTGTACATAACTTCATC 58.795 37.037 0.00 0.00 0.00 2.92
1858 1915 8.639761 ACTGATACACTATCCCTTGTACATAAC 58.360 37.037 0.00 0.00 34.26 1.89
1950 2007 2.717639 ATGTCATCAACTACAGGCCC 57.282 50.000 0.00 0.00 0.00 5.80
1979 2036 5.629435 CCGGCTAAAGAATTCAAAAGAACAC 59.371 40.000 8.44 0.00 0.00 3.32
1998 2055 7.443272 GGTATTTTATGTGTAAGAATACCGGCT 59.557 37.037 0.00 0.00 41.07 5.52
1999 2056 7.578852 GGTATTTTATGTGTAAGAATACCGGC 58.421 38.462 0.00 0.00 41.07 6.13
2144 2205 7.122799 GGCCAAGTAAGAATAAGTCCAAGAAAT 59.877 37.037 0.00 0.00 0.00 2.17
2168 2229 3.685272 CACATATCTGCAGATCATCTGGC 59.315 47.826 31.92 9.15 44.43 4.85
2226 2287 6.891908 AGAAAGGCAGTTCATGTAATACCATT 59.108 34.615 0.00 0.00 0.00 3.16
2253 2338 9.416284 ACGAACCCAAATCCAGTATTATTAAAT 57.584 29.630 0.00 0.00 0.00 1.40
2254 2339 8.810990 ACGAACCCAAATCCAGTATTATTAAA 57.189 30.769 0.00 0.00 0.00 1.52
2255 2340 8.679100 CAACGAACCCAAATCCAGTATTATTAA 58.321 33.333 0.00 0.00 0.00 1.40
2256 2341 7.283580 CCAACGAACCCAAATCCAGTATTATTA 59.716 37.037 0.00 0.00 0.00 0.98
2257 2342 6.096282 CCAACGAACCCAAATCCAGTATTATT 59.904 38.462 0.00 0.00 0.00 1.40
2258 2343 5.592688 CCAACGAACCCAAATCCAGTATTAT 59.407 40.000 0.00 0.00 0.00 1.28
2259 2344 4.944930 CCAACGAACCCAAATCCAGTATTA 59.055 41.667 0.00 0.00 0.00 0.98
2260 2345 3.761752 CCAACGAACCCAAATCCAGTATT 59.238 43.478 0.00 0.00 0.00 1.89
2261 2346 3.352648 CCAACGAACCCAAATCCAGTAT 58.647 45.455 0.00 0.00 0.00 2.12
2262 2347 2.785562 CCAACGAACCCAAATCCAGTA 58.214 47.619 0.00 0.00 0.00 2.74
2263 2348 1.616159 CCAACGAACCCAAATCCAGT 58.384 50.000 0.00 0.00 0.00 4.00
2264 2349 0.243636 GCCAACGAACCCAAATCCAG 59.756 55.000 0.00 0.00 0.00 3.86
2265 2350 1.519751 CGCCAACGAACCCAAATCCA 61.520 55.000 0.00 0.00 43.93 3.41
2278 2363 2.997303 ACAACAAAAAGAAACCGCCAAC 59.003 40.909 0.00 0.00 0.00 3.77
2311 2396 5.389935 CCACAGCTCGAAAAGTAACAGAATC 60.390 44.000 0.00 0.00 0.00 2.52
2327 2412 6.456988 CGAACATACTAAAATTCCCACAGCTC 60.457 42.308 0.00 0.00 0.00 4.09
2330 2415 6.978343 TCGAACATACTAAAATTCCCACAG 57.022 37.500 0.00 0.00 0.00 3.66
2335 2420 6.837992 TGCAGTTCGAACATACTAAAATTCC 58.162 36.000 28.78 0.00 0.00 3.01
2347 2433 1.063912 CTGTTGCTTGCAGTTCGAACA 59.936 47.619 28.78 6.96 0.00 3.18
2439 2533 8.845942 AACCTACAAGATTTGTTAAACGTTTC 57.154 30.769 18.42 4.68 42.22 2.78
2540 2634 8.826710 GGAAATGACGATATGATCAGTAAAACA 58.173 33.333 0.09 0.00 0.00 2.83
2552 2646 4.736793 GCAAAGCTTGGAAATGACGATATG 59.263 41.667 4.56 0.00 0.00 1.78
2571 2665 2.235016 AGAAAGTGTTATGCGGGCAAA 58.765 42.857 0.00 0.00 0.00 3.68
2689 2783 6.090783 GCCAAAATAACTTACAGCAAGGTAC 58.909 40.000 0.00 0.00 39.26 3.34
2712 2806 2.436115 GAGTTGCGTGGTAGGGGC 60.436 66.667 0.00 0.00 0.00 5.80
2723 2817 5.762045 TGCAGAAGAAAATAACTGAGTTGC 58.238 37.500 8.33 0.00 32.90 4.17
2804 2900 7.282585 TGGAGGAGAATGTGACCATAATAAAG 58.717 38.462 0.00 0.00 0.00 1.85
2808 2904 5.370584 TGATGGAGGAGAATGTGACCATAAT 59.629 40.000 0.00 0.00 38.09 1.28
2814 2913 7.814264 AAAATATGATGGAGGAGAATGTGAC 57.186 36.000 0.00 0.00 0.00 3.67
2874 2973 4.013050 TCCAATGAAACATTACATGCGGA 58.987 39.130 0.00 0.00 31.20 5.54
2875 2974 4.368874 TCCAATGAAACATTACATGCGG 57.631 40.909 0.00 0.00 0.00 5.69
2929 3029 7.267128 TGGCTGCATTCCAAATTATTTTAGAG 58.733 34.615 0.50 0.00 0.00 2.43
2970 3070 5.159273 TGAACATAGCCTGTGATTGTGTA 57.841 39.130 0.00 0.00 38.39 2.90
3045 3147 7.983484 CGGTATACTTGTAGGGTGATAGTTTTT 59.017 37.037 2.25 0.00 0.00 1.94
3048 3150 6.264067 GTCGGTATACTTGTAGGGTGATAGTT 59.736 42.308 2.25 0.00 0.00 2.24
3049 3151 5.767168 GTCGGTATACTTGTAGGGTGATAGT 59.233 44.000 2.25 0.00 0.00 2.12
3051 3153 5.945310 AGTCGGTATACTTGTAGGGTGATA 58.055 41.667 2.25 0.00 0.00 2.15
3052 3154 4.801164 AGTCGGTATACTTGTAGGGTGAT 58.199 43.478 2.25 0.00 0.00 3.06
3053 3155 4.240881 AGTCGGTATACTTGTAGGGTGA 57.759 45.455 2.25 0.00 0.00 4.02
3054 3156 4.996788 AAGTCGGTATACTTGTAGGGTG 57.003 45.455 2.25 0.00 38.28 4.61
3071 3177 5.687285 CGCATTTAAATATGGAAGGCAAGTC 59.313 40.000 0.00 0.00 31.12 3.01
3111 3217 4.495679 CCACAAACGTATCATTAGCGCAAT 60.496 41.667 11.47 4.57 0.00 3.56
3185 3293 7.658575 GTGTTTCTAATACCTGAAGTTGGTACA 59.341 37.037 0.00 0.00 42.12 2.90
3186 3294 7.876582 AGTGTTTCTAATACCTGAAGTTGGTAC 59.123 37.037 0.00 0.00 42.12 3.34
3187 3295 7.970102 AGTGTTTCTAATACCTGAAGTTGGTA 58.030 34.615 0.00 0.00 43.28 3.25
3189 3297 9.099454 GATAGTGTTTCTAATACCTGAAGTTGG 57.901 37.037 0.00 0.00 31.94 3.77
3190 3298 9.877178 AGATAGTGTTTCTAATACCTGAAGTTG 57.123 33.333 0.00 0.00 31.94 3.16
3236 3345 7.898014 ACATACAGTGTCATGACCTAGATAA 57.102 36.000 22.85 0.00 35.77 1.75
3246 3355 6.583427 CCAATTCACAAACATACAGTGTCATG 59.417 38.462 0.00 5.19 41.14 3.07
3281 3398 9.660180 GGATATCCAACTCAGATTTATAGAACC 57.340 37.037 17.34 0.00 35.64 3.62
3370 3490 7.913789 TCTCTTATACAGCCAAAGAAAGGTAA 58.086 34.615 0.00 0.00 0.00 2.85
3372 3492 6.374417 TCTCTTATACAGCCAAAGAAAGGT 57.626 37.500 0.00 0.00 0.00 3.50
3417 3539 1.780309 ACACAGAGGGGAACCATTTCA 59.220 47.619 0.00 0.00 44.85 2.69
3650 3802 1.006281 TCCCTTGAGGATTTGCAGCAT 59.994 47.619 0.00 0.00 40.93 3.79
3661 3813 9.853177 AATACTAGTTCAATTAATCCCTTGAGG 57.147 33.333 0.00 0.00 33.25 3.86
3709 3865 5.782893 ACTTTATAGCTAGCACCTCAGAG 57.217 43.478 18.83 8.08 0.00 3.35
3736 3892 6.618287 TTTGCTGTAGTATTATGCCATGTC 57.382 37.500 0.00 0.00 0.00 3.06
3803 3959 3.489398 GGTGGCGAAACACACAATTAACA 60.489 43.478 7.46 0.00 43.08 2.41
3883 4039 5.067805 AGCAAAATGCCTAGCCTGTAATTAC 59.932 40.000 8.75 8.75 46.52 1.89
3890 4046 2.225019 CGATAGCAAAATGCCTAGCCTG 59.775 50.000 0.00 0.00 46.52 4.85
3891 4047 2.498167 CGATAGCAAAATGCCTAGCCT 58.502 47.619 0.00 0.00 46.52 4.58
3892 4048 2.977405 CGATAGCAAAATGCCTAGCC 57.023 50.000 0.00 0.00 46.52 3.93
3942 4098 1.883926 GGTTGAAAAAGGAGCGCCTAA 59.116 47.619 10.31 0.00 46.28 2.69
3951 4107 6.654161 TCATAATTTGGCATGGTTGAAAAAGG 59.346 34.615 0.00 0.00 0.00 3.11
3962 4118 5.104374 GTGTGTTCCTCATAATTTGGCATG 58.896 41.667 0.00 0.00 0.00 4.06
4043 4205 7.398024 AGCAGAACTAAGAACAATATGAACCT 58.602 34.615 0.00 0.00 0.00 3.50
4045 4207 8.256611 TGAGCAGAACTAAGAACAATATGAAC 57.743 34.615 0.00 0.00 0.00 3.18
4065 4227 0.250252 TGACATCGGCAAACTGAGCA 60.250 50.000 0.00 0.00 33.72 4.26
4085 4247 2.540265 AAGAGGCTGTTGACTGTCAG 57.460 50.000 10.77 0.00 35.12 3.51
4190 4353 7.517614 TGAACATTTCTTATGGTACTTGCAA 57.482 32.000 0.00 0.00 0.00 4.08
4288 4454 5.776173 ACGAGGAGGACTGATTATTACTG 57.224 43.478 0.00 0.00 0.00 2.74
4305 4586 2.710096 ATGGGTACATGGAAACGAGG 57.290 50.000 0.00 0.00 35.57 4.63
4309 4590 3.945285 CACACCTATGGGTACATGGAAAC 59.055 47.826 0.00 0.00 45.41 2.78
4326 4611 8.986847 CAGAGAAACATATTCAGATATCACACC 58.013 37.037 5.32 0.00 0.00 4.16
4387 4672 8.462016 AGGATTAAAATTCAGGAACAAATCTCG 58.538 33.333 0.00 0.00 0.00 4.04
4513 4812 6.161855 TCAATGTATAGCTGTTCAGGTAGG 57.838 41.667 15.19 3.83 0.00 3.18
4544 4843 3.542712 TGCGAAAGAAATTGAGAGCAC 57.457 42.857 0.00 0.00 0.00 4.40
4545 4844 4.771590 AATGCGAAAGAAATTGAGAGCA 57.228 36.364 0.00 0.00 37.77 4.26
4546 4845 5.156355 TCAAATGCGAAAGAAATTGAGAGC 58.844 37.500 0.00 0.00 0.00 4.09
4606 4905 7.665145 TCATGACATCTTCACACCAAAATAAGA 59.335 33.333 0.00 0.00 36.92 2.10
4609 4908 7.757941 TTCATGACATCTTCACACCAAAATA 57.242 32.000 0.00 0.00 36.92 1.40
4610 4909 6.653526 TTCATGACATCTTCACACCAAAAT 57.346 33.333 0.00 0.00 36.92 1.82
4637 4996 2.230508 CTGTAACCTGCTAGACCGAACA 59.769 50.000 0.00 0.00 0.00 3.18
4667 5026 3.439129 GGGAATAACACGAGAAAGGTTGG 59.561 47.826 0.00 0.00 0.00 3.77
4674 5036 3.260884 AGCTGAAGGGAATAACACGAGAA 59.739 43.478 0.00 0.00 0.00 2.87
4679 5041 2.436417 TGCAGCTGAAGGGAATAACAC 58.564 47.619 20.43 0.00 0.00 3.32
4713 5075 8.856247 GGTAACAACTTTACAAAACAAACTGAG 58.144 33.333 0.00 0.00 0.00 3.35
4763 5126 2.483876 CTGCATCGGGGTAACTATGTG 58.516 52.381 0.00 0.00 0.00 3.21
4783 5146 6.682441 GCACACAAATTTAAACTTTCTGTTGC 59.318 34.615 0.00 1.94 39.13 4.17
4799 5162 2.297033 CCTGCAAAGGTAGCACACAAAT 59.703 45.455 0.00 0.00 37.02 2.32
4803 5166 0.875059 GACCTGCAAAGGTAGCACAC 59.125 55.000 0.00 0.00 43.24 3.82
4934 5297 3.825308 TCAATTCTGAAAAGCGCATCAC 58.175 40.909 11.47 0.00 0.00 3.06
4940 5303 6.129613 CGAAGAAAGTTCAATTCTGAAAAGCG 60.130 38.462 0.00 0.00 43.18 4.68
4943 5306 7.862372 CCATCGAAGAAAGTTCAATTCTGAAAA 59.138 33.333 0.00 0.00 41.51 2.29
4964 5327 6.554419 TGAAATCAGATGTTTTAAGCCATCG 58.446 36.000 9.49 6.46 41.81 3.84
4974 5337 8.756486 TGATGATGGTATGAAATCAGATGTTT 57.244 30.769 0.00 0.00 36.31 2.83
5010 5375 3.267860 CCTCGCAGCGATTCAGCC 61.268 66.667 19.91 0.00 38.01 4.85
5052 5417 6.183810 AGTACTTAATACATTGGTAGCCCC 57.816 41.667 0.00 0.00 36.09 5.80
5058 5423 9.054580 AGTTTCCCTAGTACTTAATACATTGGT 57.945 33.333 0.00 0.00 36.09 3.67
5071 5436 4.267349 TGCACTTGAGTTTCCCTAGTAC 57.733 45.455 0.00 0.00 0.00 2.73
5085 5450 6.091169 GGATAATGTCCACAAAATTGCACTTG 59.909 38.462 0.00 0.00 46.96 3.16
5086 5451 6.165577 GGATAATGTCCACAAAATTGCACTT 58.834 36.000 0.00 0.00 46.96 3.16
5124 5490 8.856153 TGAAATAGTACTCCAAAACTAATGCA 57.144 30.769 0.00 0.00 32.24 3.96
5137 5503 9.103861 CTCCCAAAGAAGAATGAAATAGTACTC 57.896 37.037 0.00 0.00 0.00 2.59
5138 5504 7.554476 GCTCCCAAAGAAGAATGAAATAGTACT 59.446 37.037 0.00 0.00 0.00 2.73
5168 5534 0.475828 AAGGGCTACAGGTTCAGGGT 60.476 55.000 0.00 0.00 0.00 4.34
5182 5548 1.067565 GCTTAGCAAGGTTTCAAGGGC 60.068 52.381 0.00 0.00 0.00 5.19
5219 5585 9.141400 GCTGTATAAGAAGTTATCTAATTCCCG 57.859 37.037 0.00 0.00 37.42 5.14
5242 5609 3.672767 AGCAAATCCCAAAGAAAGCTG 57.327 42.857 0.00 0.00 31.27 4.24
5243 5610 4.383173 CAAAGCAAATCCCAAAGAAAGCT 58.617 39.130 0.00 0.00 33.08 3.74
5244 5611 3.499537 CCAAAGCAAATCCCAAAGAAAGC 59.500 43.478 0.00 0.00 0.00 3.51
5246 5613 4.163078 TCACCAAAGCAAATCCCAAAGAAA 59.837 37.500 0.00 0.00 0.00 2.52
5247 5614 3.708631 TCACCAAAGCAAATCCCAAAGAA 59.291 39.130 0.00 0.00 0.00 2.52
5261 5755 7.568199 AGTCGGGATTATAATTTCACCAAAG 57.432 36.000 0.00 0.00 0.00 2.77
5263 5757 8.025270 TCTAGTCGGGATTATAATTTCACCAA 57.975 34.615 0.00 0.00 0.00 3.67
5266 5760 9.575783 GAGATCTAGTCGGGATTATAATTTCAC 57.424 37.037 0.00 0.00 0.00 3.18
5281 5775 4.731720 CATATGCACTGGAGATCTAGTCG 58.268 47.826 0.00 0.00 35.39 4.18
5299 5793 7.170277 TGTTGTCAGGATTATAGCATGCATAT 58.830 34.615 21.98 16.04 0.00 1.78
5303 5797 5.528690 TCTTGTTGTCAGGATTATAGCATGC 59.471 40.000 10.51 10.51 0.00 4.06
5304 5798 7.741027 ATCTTGTTGTCAGGATTATAGCATG 57.259 36.000 0.00 0.00 37.12 4.06
5305 5799 8.757982 AAATCTTGTTGTCAGGATTATAGCAT 57.242 30.769 6.12 0.00 45.31 3.79
5306 5800 8.461222 CAAAATCTTGTTGTCAGGATTATAGCA 58.539 33.333 6.12 0.00 45.31 3.49
5307 5801 8.462016 ACAAAATCTTGTTGTCAGGATTATAGC 58.538 33.333 6.12 0.00 45.31 2.97
5311 5805 9.513906 TGATACAAAATCTTGTTGTCAGGATTA 57.486 29.630 6.12 0.00 45.31 1.75
5315 5809 9.559958 GTTATGATACAAAATCTTGTTGTCAGG 57.440 33.333 0.00 0.00 43.45 3.86
5316 5810 9.559958 GGTTATGATACAAAATCTTGTTGTCAG 57.440 33.333 0.00 0.00 43.45 3.51
5425 6237 5.560966 ATGCCATCTTGTAAAAAGTACGG 57.439 39.130 0.00 0.00 0.00 4.02
5488 6304 7.453752 AGACTTTCTCCTACTTATGTTGTACCA 59.546 37.037 0.00 0.00 0.00 3.25
5489 6305 7.760340 CAGACTTTCTCCTACTTATGTTGTACC 59.240 40.741 0.00 0.00 0.00 3.34
5502 6318 2.501723 GGGTGATGCAGACTTTCTCCTA 59.498 50.000 0.00 0.00 0.00 2.94
5507 6323 1.280421 AGAGGGGTGATGCAGACTTTC 59.720 52.381 0.00 0.00 0.00 2.62
5509 6325 0.908198 GAGAGGGGTGATGCAGACTT 59.092 55.000 0.00 0.00 0.00 3.01
5510 6326 0.252421 TGAGAGGGGTGATGCAGACT 60.252 55.000 0.00 0.00 0.00 3.24
5511 6327 0.177604 CTGAGAGGGGTGATGCAGAC 59.822 60.000 0.00 0.00 0.00 3.51
5512 6328 1.620739 GCTGAGAGGGGTGATGCAGA 61.621 60.000 0.00 0.00 0.00 4.26
5513 6329 1.153208 GCTGAGAGGGGTGATGCAG 60.153 63.158 0.00 0.00 0.00 4.41
5514 6330 2.673200 GGCTGAGAGGGGTGATGCA 61.673 63.158 0.00 0.00 0.00 3.96
5516 6332 1.222936 GTGGCTGAGAGGGGTGATG 59.777 63.158 0.00 0.00 0.00 3.07
5517 6333 1.997874 GGTGGCTGAGAGGGGTGAT 60.998 63.158 0.00 0.00 0.00 3.06
5518 6334 2.607750 GGTGGCTGAGAGGGGTGA 60.608 66.667 0.00 0.00 0.00 4.02
5522 6338 3.551496 TTTGCGGTGGCTGAGAGGG 62.551 63.158 0.00 0.00 40.82 4.30
5523 6339 0.962356 ATTTTGCGGTGGCTGAGAGG 60.962 55.000 0.00 0.00 40.82 3.69
5524 6340 0.883833 AATTTTGCGGTGGCTGAGAG 59.116 50.000 0.00 0.00 40.82 3.20
5525 6341 0.881118 GAATTTTGCGGTGGCTGAGA 59.119 50.000 0.00 0.00 40.82 3.27
5551 6367 1.134946 CCGGGCCAAAGAAATAGCTTG 59.865 52.381 4.39 0.00 0.00 4.01
5552 6368 1.005450 TCCGGGCCAAAGAAATAGCTT 59.995 47.619 4.39 0.00 0.00 3.74
5630 6446 4.825422 TCGACAATCTGAAGAAGCTCATT 58.175 39.130 0.00 0.00 0.00 2.57
5701 6517 3.018423 ACTTCTTCTGCAAAACCCTGT 57.982 42.857 0.00 0.00 0.00 4.00
5821 6637 6.152379 GGCCTTTTCACATCTTCTAACTTTG 58.848 40.000 0.00 0.00 0.00 2.77
5823 6639 5.385198 TGGCCTTTTCACATCTTCTAACTT 58.615 37.500 3.32 0.00 0.00 2.66
5824 6640 4.985538 TGGCCTTTTCACATCTTCTAACT 58.014 39.130 3.32 0.00 0.00 2.24
5825 6641 5.705609 TTGGCCTTTTCACATCTTCTAAC 57.294 39.130 3.32 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.