Multiple sequence alignment - TraesCS6D01G076900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G076900 chr6D 100.000 5975 0 0 1 5975 41442164 41448138 0.000000e+00 11034.0
1 TraesCS6D01G076900 chr6D 83.841 328 31 11 204 527 41407928 41408237 5.860000e-75 292.0
2 TraesCS6D01G076900 chr6A 88.515 2969 156 70 217 3057 51918749 51921660 0.000000e+00 3422.0
3 TraesCS6D01G076900 chr6A 94.172 326 19 0 4683 5008 51923334 51923659 1.160000e-136 497.0
4 TraesCS6D01G076900 chr6A 86.648 352 38 8 4162 4511 51922879 51923223 1.220000e-101 381.0
5 TraesCS6D01G076900 chr6A 83.333 432 41 17 205 634 51910210 51910612 2.630000e-98 370.0
6 TraesCS6D01G076900 chr6A 95.633 229 6 3 9 235 51918510 51918736 1.220000e-96 364.0
7 TraesCS6D01G076900 chr6A 84.848 297 26 9 5587 5870 51924692 51924982 1.270000e-71 281.0
8 TraesCS6D01G076900 chr6A 92.500 40 3 0 1104 1143 51919596 51919635 2.330000e-04 58.4
9 TraesCS6D01G076900 chr6B 90.411 2263 144 37 2330 4540 96473532 96471291 0.000000e+00 2909.0
10 TraesCS6D01G076900 chr6B 87.942 2405 102 84 1 2282 96475875 96473536 0.000000e+00 2662.0
11 TraesCS6D01G076900 chr6B 96.508 315 11 0 4683 4997 96471194 96470880 6.860000e-144 521.0
12 TraesCS6D01G076900 chr6B 80.479 543 63 24 114 652 96539834 96539331 5.650000e-100 375.0
13 TraesCS6D01G076900 chr6B 84.615 364 33 11 5608 5953 96466245 96465887 2.060000e-89 340.0
14 TraesCS6D01G076900 chr6B 87.943 141 7 5 5008 5142 96470780 96470644 2.230000e-34 158.0
15 TraesCS6D01G076900 chr6B 79.433 141 19 6 3809 3948 96472492 96472361 2.290000e-14 91.6
16 TraesCS6D01G076900 chr5D 87.200 125 16 0 5806 5930 519547441 519547565 6.240000e-30 143.0
17 TraesCS6D01G076900 chr4A 82.353 153 24 3 5803 5953 701935819 701935668 4.860000e-26 130.0
18 TraesCS6D01G076900 chr3D 82.192 146 25 1 5804 5948 239601110 239600965 2.260000e-24 124.0
19 TraesCS6D01G076900 chr3B 81.169 154 27 2 5804 5956 341219585 341219433 8.130000e-24 122.0
20 TraesCS6D01G076900 chr1A 82.394 142 24 1 5804 5944 387861640 387861499 8.130000e-24 122.0
21 TraesCS6D01G076900 chr5B 83.200 125 21 0 5806 5930 654377242 654377366 1.360000e-21 115.0
22 TraesCS6D01G076900 chr2D 81.481 135 24 1 5819 5952 7071738 7071604 6.330000e-20 110.0
23 TraesCS6D01G076900 chr2D 86.154 65 5 2 1193 1254 558800570 558800633 3.860000e-07 67.6
24 TraesCS6D01G076900 chr2A 78.698 169 31 5 5806 5970 684197039 684197206 2.280000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G076900 chr6D 41442164 41448138 5974 False 11034.00 11034 100.0000 1 5975 1 chr6D.!!$F2 5974
1 TraesCS6D01G076900 chr6A 51918510 51924982 6472 False 833.90 3422 90.3860 9 5870 6 chr6A.!!$F2 5861
2 TraesCS6D01G076900 chr6B 96470644 96475875 5231 True 1268.32 2909 88.4474 1 5142 5 chr6B.!!$R3 5141
3 TraesCS6D01G076900 chr6B 96539331 96539834 503 True 375.00 375 80.4790 114 652 1 chr6B.!!$R2 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 80 0.829333 ATTTTGTGCACTTGCCCACA 59.171 45.0 19.41 0.0 39.95 4.17 F
1692 1832 0.243365 CAAGGCCGCAGCATTTTACA 59.757 50.0 0.00 0.0 40.90 2.41 F
3580 3970 0.039527 TCCGATGACTGACGTGTGTG 60.040 55.0 0.00 0.0 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 1931 0.033894 GTCCCTCGGTCTCTTCCTCT 60.034 60.0 0.00 0.0 0.00 3.69 R
3664 4080 0.254747 GCCTATTGTACAGGTGGCCA 59.745 55.0 18.43 0.0 35.45 5.36 R
5280 5860 0.035630 CTAGCCATAGCCATCCAGCC 60.036 60.0 0.00 0.0 41.25 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 80 0.829333 ATTTTGTGCACTTGCCCACA 59.171 45.000 19.41 0.00 39.95 4.17
96 100 6.426633 CCCACATTAAATTCTCCAAACCAAAC 59.573 38.462 0.00 0.00 0.00 2.93
372 414 1.909302 TCCCTCACCTGTCTCCAATTC 59.091 52.381 0.00 0.00 0.00 2.17
473 523 6.526674 CGAAATTAGCACCACCAAGATTAAAC 59.473 38.462 0.00 0.00 0.00 2.01
477 527 5.806654 AGCACCACCAAGATTAAACAATT 57.193 34.783 0.00 0.00 0.00 2.32
478 528 5.540911 AGCACCACCAAGATTAAACAATTG 58.459 37.500 3.24 3.24 0.00 2.32
493 546 5.977489 AACAATTGCCCCTAGACTAAAAC 57.023 39.130 5.05 0.00 0.00 2.43
498 551 5.777850 TTGCCCCTAGACTAAAACAAAAC 57.222 39.130 0.00 0.00 0.00 2.43
769 828 4.219725 CGTTTCCTTCTTCCTTCTCTCTCT 59.780 45.833 0.00 0.00 0.00 3.10
770 829 5.416326 CGTTTCCTTCTTCCTTCTCTCTCTA 59.584 44.000 0.00 0.00 0.00 2.43
798 861 2.164219 GTCTCTCTCCTGCTCTTGAGTG 59.836 54.545 0.00 0.00 0.00 3.51
992 1089 1.227002 CGGCGAGGAGGAAAGTAGC 60.227 63.158 0.00 0.00 0.00 3.58
1023 1120 0.323816 AGACAGCGATGGAGACCTCA 60.324 55.000 5.32 0.00 0.00 3.86
1054 1151 1.219393 GAGACCAAGAAGGAGCCGG 59.781 63.158 0.00 0.00 41.22 6.13
1106 1203 4.697756 CAAGAAGGGGCCGACGCA 62.698 66.667 0.00 0.00 36.38 5.24
1159 1280 2.498726 CGGCTCCTGCTCCTTCTC 59.501 66.667 0.00 0.00 39.59 2.87
1556 1695 0.261109 CTAGGTACCGGAACCCCTCT 59.739 60.000 9.46 0.00 40.71 3.69
1567 1706 1.276705 GAACCCCTCTCACTTCCTCAC 59.723 57.143 0.00 0.00 0.00 3.51
1605 1744 3.627732 ACAGAGTTGTGAGTCGTACTG 57.372 47.619 0.00 0.00 35.83 2.74
1692 1832 0.243365 CAAGGCCGCAGCATTTTACA 59.757 50.000 0.00 0.00 40.90 2.41
1755 1895 4.218686 GGCTTGGGTGGGTGGTGT 62.219 66.667 0.00 0.00 0.00 4.16
1791 1931 0.178921 AGAGAGACAGCCAGGACCAA 60.179 55.000 0.00 0.00 0.00 3.67
1897 2044 1.743996 CTCTGTTTGCCCCTAAGAGC 58.256 55.000 0.00 0.00 0.00 4.09
1902 2049 3.659089 TTGCCCCTAAGAGCGACGC 62.659 63.158 13.03 13.03 0.00 5.19
1964 2111 2.304516 AAATCGCGCGAAATCACGGG 62.305 55.000 38.07 0.00 46.17 5.28
1987 2139 4.576873 GGAATCATCGAGACTGACTGACTA 59.423 45.833 0.00 0.00 0.00 2.59
1995 2154 4.671377 GAGACTGACTGACTATGCTGAAG 58.329 47.826 0.00 0.00 0.00 3.02
1996 2155 4.085733 AGACTGACTGACTATGCTGAAGT 58.914 43.478 0.00 0.00 0.00 3.01
2019 2178 7.214381 AGTAGTTATGCAACACTTGTGAACTA 58.786 34.615 7.83 6.99 37.10 2.24
2020 2179 6.545504 AGTTATGCAACACTTGTGAACTAG 57.454 37.500 7.83 0.00 37.10 2.57
2022 2181 7.214381 AGTTATGCAACACTTGTGAACTAGTA 58.786 34.615 7.83 0.00 37.10 1.82
2038 2198 9.367444 GTGAACTAGTAGTATGCAAGTTGTTAT 57.633 33.333 2.50 2.66 30.83 1.89
2040 2200 9.582431 GAACTAGTAGTATGCAAGTTGTTATGA 57.418 33.333 2.50 0.00 30.83 2.15
2042 2202 8.528643 ACTAGTAGTATGCAAGTTGTTATGACA 58.471 33.333 0.00 0.00 0.00 3.58
2050 2210 7.971183 TGCAAGTTGTTATGACAAGTGTATA 57.029 32.000 11.12 0.00 46.16 1.47
2055 2232 9.733556 AAGTTGTTATGACAAGTGTATATCCAA 57.266 29.630 11.12 0.00 46.16 3.53
2060 2237 9.811995 GTTATGACAAGTGTATATCCAAGTGTA 57.188 33.333 0.00 0.00 0.00 2.90
2070 2247 0.685097 TCCAAGTGTACCTGTCCAGC 59.315 55.000 0.00 0.00 0.00 4.85
2071 2248 0.396435 CCAAGTGTACCTGTCCAGCA 59.604 55.000 0.00 0.00 0.00 4.41
2140 2318 3.195610 CCACTGTCTGGAGCTGTATGTTA 59.804 47.826 0.00 0.00 43.95 2.41
2142 2320 5.237815 CACTGTCTGGAGCTGTATGTTAAA 58.762 41.667 0.00 0.00 0.00 1.52
2143 2321 5.700832 CACTGTCTGGAGCTGTATGTTAAAA 59.299 40.000 0.00 0.00 0.00 1.52
2144 2322 5.934625 ACTGTCTGGAGCTGTATGTTAAAAG 59.065 40.000 0.00 0.00 0.00 2.27
2145 2323 5.865085 TGTCTGGAGCTGTATGTTAAAAGT 58.135 37.500 0.00 0.00 0.00 2.66
2151 2347 6.995686 TGGAGCTGTATGTTAAAAGTGAAGAA 59.004 34.615 0.00 0.00 0.00 2.52
2166 2362 4.279420 AGTGAAGAAGTGCCCTTTGATTTC 59.721 41.667 0.00 0.00 0.00 2.17
2167 2363 4.037923 GTGAAGAAGTGCCCTTTGATTTCA 59.962 41.667 0.00 0.00 0.00 2.69
2169 2365 3.160269 AGAAGTGCCCTTTGATTTCAGG 58.840 45.455 0.00 0.00 0.00 3.86
2173 2369 3.697799 CCCTTTGATTTCAGGGCCT 57.302 52.632 0.00 0.00 43.69 5.19
2174 2370 1.188863 CCCTTTGATTTCAGGGCCTG 58.811 55.000 28.01 28.01 43.69 4.85
2175 2371 1.550869 CCCTTTGATTTCAGGGCCTGT 60.551 52.381 31.60 14.41 43.69 4.00
2177 2373 3.628257 CCCTTTGATTTCAGGGCCTGTAT 60.628 47.826 31.60 24.62 43.69 2.29
2178 2374 4.386312 CCCTTTGATTTCAGGGCCTGTATA 60.386 45.833 31.60 18.50 43.69 1.47
2342 2544 4.006319 GTGCCTCTTCTAAGCATCTTGTT 58.994 43.478 0.00 0.00 39.04 2.83
2372 2574 8.045176 AGAAAACTATATGTGAAGTTGCTTCC 57.955 34.615 6.44 0.00 39.51 3.46
2378 2580 1.148273 TGAAGTTGCTTCCGGTGCT 59.852 52.632 19.31 3.31 39.51 4.40
2402 2604 4.698201 TCTGAAAGTGGTCACCAATACA 57.302 40.909 0.00 0.51 34.18 2.29
2724 2968 1.279271 GATGTGGTAGGGTGTGCTTCT 59.721 52.381 0.00 0.00 0.00 2.85
2924 3168 0.322546 AACAAGGTCCAAGGGCGATC 60.323 55.000 0.00 0.00 0.00 3.69
3069 3431 2.100749 CGGTTCCTTGCCTTTCAAAAGT 59.899 45.455 2.09 0.00 33.65 2.66
3212 3589 1.227943 TGCAGCCACTTCGAAAGCT 60.228 52.632 10.34 10.34 35.52 3.74
3229 3606 5.681543 CGAAAGCTGGTGAAAACTAAGAAAC 59.318 40.000 0.00 0.00 0.00 2.78
3253 3632 8.384607 ACAGAGAGGTAGAAAATGAAGAAAAC 57.615 34.615 0.00 0.00 0.00 2.43
3261 3640 5.415221 AGAAAATGAAGAAAACGGTTGCAA 58.585 33.333 0.00 0.00 0.00 4.08
3273 3652 1.857837 CGGTTGCAATCAAAACCACAC 59.142 47.619 10.93 0.00 45.13 3.82
3432 3821 1.064803 CTAGTAGCAGGTCACGCTGAG 59.935 57.143 0.00 0.00 40.73 3.35
3462 3851 4.327898 GCATGGAATTTATGTGCACAAGTG 59.672 41.667 25.72 12.28 35.93 3.16
3463 3852 5.472148 CATGGAATTTATGTGCACAAGTGT 58.528 37.500 25.72 10.02 0.00 3.55
3476 3865 8.341892 TGTGCACAAGTGTTGGAAAATATATA 57.658 30.769 19.28 0.00 34.12 0.86
3480 3869 9.855021 GCACAAGTGTTGGAAAATATATAAACT 57.145 29.630 1.79 0.00 34.12 2.66
3530 3920 3.802866 TGTGTGCACATCACTAGTTCAA 58.197 40.909 24.69 0.00 45.81 2.69
3531 3921 4.388485 TGTGTGCACATCACTAGTTCAAT 58.612 39.130 24.69 0.00 45.81 2.57
3532 3922 4.452114 TGTGTGCACATCACTAGTTCAATC 59.548 41.667 24.69 5.06 45.81 2.67
3580 3970 0.039527 TCCGATGACTGACGTGTGTG 60.040 55.000 0.00 0.00 0.00 3.82
3624 4039 4.875578 TCTGATACTGTAGTACCCTGGT 57.124 45.455 0.00 0.00 32.72 4.00
3626 4041 3.028850 TGATACTGTAGTACCCTGGTGC 58.971 50.000 0.00 0.00 32.72 5.01
3627 4042 1.466856 TACTGTAGTACCCTGGTGCG 58.533 55.000 0.00 0.00 35.88 5.34
3641 4057 3.502211 CCTGGTGCGAATTTGTCTAGTTT 59.498 43.478 0.00 0.00 0.00 2.66
3683 4099 0.254747 TGGCCACCTGTACAATAGGC 59.745 55.000 18.78 18.78 38.96 3.93
3685 4101 1.436983 GCCACCTGTACAATAGGCGC 61.437 60.000 14.10 0.00 38.96 6.53
3692 4108 4.944930 ACCTGTACAATAGGCGCAAATAAA 59.055 37.500 10.83 0.00 38.96 1.40
3697 4113 4.754322 ACAATAGGCGCAAATAAAAAGGG 58.246 39.130 10.83 0.00 0.00 3.95
3698 4114 4.221924 ACAATAGGCGCAAATAAAAAGGGT 59.778 37.500 10.83 0.00 0.00 4.34
3699 4115 2.741759 AGGCGCAAATAAAAAGGGTG 57.258 45.000 10.83 0.00 0.00 4.61
3700 4116 2.243810 AGGCGCAAATAAAAAGGGTGA 58.756 42.857 10.83 0.00 0.00 4.02
3701 4117 2.630580 AGGCGCAAATAAAAAGGGTGAA 59.369 40.909 10.83 0.00 0.00 3.18
3702 4118 3.070302 AGGCGCAAATAAAAAGGGTGAAA 59.930 39.130 10.83 0.00 0.00 2.69
3739 4157 3.072476 TCGATCAACAGGAGAAAAAGGGT 59.928 43.478 0.00 0.00 0.00 4.34
3758 4176 2.884639 GGTGTAGCAACTGAAACCACAT 59.115 45.455 0.00 0.00 0.00 3.21
3778 4196 1.266718 TGAAAGCGAAATGAGTGTGCC 59.733 47.619 0.00 0.00 0.00 5.01
3794 4212 2.884367 CCGCCGCCATTGTTTGAT 59.116 55.556 0.00 0.00 0.00 2.57
3797 4215 1.135257 CCGCCGCCATTGTTTGATTTA 60.135 47.619 0.00 0.00 0.00 1.40
3798 4216 2.184448 CGCCGCCATTGTTTGATTTAG 58.816 47.619 0.00 0.00 0.00 1.85
3799 4217 2.415357 CGCCGCCATTGTTTGATTTAGT 60.415 45.455 0.00 0.00 0.00 2.24
3867 4290 5.474876 ACATTTGTCTTCTCCAAGATGAACC 59.525 40.000 0.00 0.00 40.88 3.62
3877 4300 3.016736 CCAAGATGAACCGTAAATGCCT 58.983 45.455 0.00 0.00 0.00 4.75
3886 4309 4.776795 ACCGTAAATGCCTCGAAATTTT 57.223 36.364 5.90 0.00 0.00 1.82
3932 4355 4.284490 AGGTCACTCTGAAGAAGTTGCATA 59.716 41.667 0.00 0.00 0.00 3.14
3945 4368 6.489675 AGAAGTTGCATAGAATTTATGTGCG 58.510 36.000 8.00 0.00 38.58 5.34
3980 4404 2.281539 TCTCAGTCGTACCTGGTCAA 57.718 50.000 0.63 0.00 33.14 3.18
4011 4441 8.538701 TGTAAGTAGTGGGGAAAATATAAACGA 58.461 33.333 0.00 0.00 0.00 3.85
4021 4451 5.697633 GGAAAATATAAACGATGGCGACCTA 59.302 40.000 0.00 0.00 41.64 3.08
4060 4514 4.098914 TCTGCCTTTACTGTTTGGACAT 57.901 40.909 0.00 0.00 34.72 3.06
4149 4624 9.614792 ACTTAATCTTGAACTTAACTGTGTTCT 57.385 29.630 9.85 0.00 41.99 3.01
4158 4633 6.867662 ACTTAACTGTGTTCTGAATTCCTG 57.132 37.500 2.27 0.00 0.00 3.86
4159 4634 6.591935 ACTTAACTGTGTTCTGAATTCCTGA 58.408 36.000 2.27 0.00 0.00 3.86
4160 4635 7.227156 ACTTAACTGTGTTCTGAATTCCTGAT 58.773 34.615 2.27 0.00 0.00 2.90
4175 4650 7.754924 TGAATTCCTGATTTAACTTCGCAAATC 59.245 33.333 2.27 0.00 40.17 2.17
4180 4655 7.541783 TCCTGATTTAACTTCGCAAATCATTTG 59.458 33.333 5.68 5.68 45.34 2.32
4222 4698 2.892215 TGCACCAGCTTTTCATCATCAA 59.108 40.909 0.00 0.00 42.74 2.57
4285 4762 5.012975 TGCATTATCTACATAGGCATGGACA 59.987 40.000 0.00 0.00 36.39 4.02
4435 4912 4.899239 GGGATGAGCGTCGCCCTG 62.899 72.222 14.86 0.00 37.59 4.45
4513 4990 1.637553 AGCCCTGTTCAGGTGATCAAT 59.362 47.619 16.33 0.00 0.00 2.57
4514 4991 2.042162 AGCCCTGTTCAGGTGATCAATT 59.958 45.455 16.33 0.00 0.00 2.32
4516 4993 4.016444 GCCCTGTTCAGGTGATCAATTAA 58.984 43.478 16.33 0.00 0.00 1.40
4518 4995 5.256474 CCCTGTTCAGGTGATCAATTAACT 58.744 41.667 16.33 0.00 0.00 2.24
4519 4996 5.124457 CCCTGTTCAGGTGATCAATTAACTG 59.876 44.000 16.33 1.78 0.00 3.16
4529 5006 9.131791 AGGTGATCAATTAACTGTTGTTACTTT 57.868 29.630 2.69 0.00 38.26 2.66
4542 5019 9.828039 ACTGTTGTTACTTTAAAAGCTAGTACT 57.172 29.630 0.00 0.00 0.00 2.73
4575 5052 7.544915 ACATCGATGAATTCTCATATGCTACTG 59.455 37.037 31.33 0.00 42.60 2.74
4578 5055 5.294734 TGAATTCTCATATGCTACTGCCA 57.705 39.130 7.05 0.00 38.71 4.92
4579 5056 5.872963 TGAATTCTCATATGCTACTGCCAT 58.127 37.500 7.05 0.00 38.71 4.40
4580 5057 6.301486 TGAATTCTCATATGCTACTGCCATT 58.699 36.000 7.05 0.00 38.71 3.16
4581 5058 6.206048 TGAATTCTCATATGCTACTGCCATTG 59.794 38.462 7.05 0.00 38.71 2.82
4582 5059 4.694760 TCTCATATGCTACTGCCATTGT 57.305 40.909 0.00 0.00 38.71 2.71
4583 5060 5.039920 TCTCATATGCTACTGCCATTGTT 57.960 39.130 0.00 0.00 38.71 2.83
4585 5062 6.772605 TCTCATATGCTACTGCCATTGTTAT 58.227 36.000 0.00 0.00 38.71 1.89
4586 5063 6.875726 TCTCATATGCTACTGCCATTGTTATC 59.124 38.462 0.00 0.00 38.71 1.75
4587 5064 6.532826 TCATATGCTACTGCCATTGTTATCA 58.467 36.000 0.00 0.00 38.71 2.15
4588 5065 7.170277 TCATATGCTACTGCCATTGTTATCAT 58.830 34.615 0.00 0.00 38.71 2.45
4589 5066 5.954296 ATGCTACTGCCATTGTTATCATC 57.046 39.130 0.00 0.00 38.71 2.92
4591 5068 5.192176 TGCTACTGCCATTGTTATCATCAA 58.808 37.500 0.00 0.00 38.71 2.57
4592 5069 5.066375 TGCTACTGCCATTGTTATCATCAAC 59.934 40.000 0.00 0.00 38.71 3.18
4593 5070 5.066375 GCTACTGCCATTGTTATCATCAACA 59.934 40.000 0.00 0.00 36.65 3.33
4594 5071 5.314923 ACTGCCATTGTTATCATCAACAC 57.685 39.130 0.00 0.00 38.12 3.32
4595 5072 4.766373 ACTGCCATTGTTATCATCAACACA 59.234 37.500 0.00 0.00 38.12 3.72
4596 5073 5.106038 ACTGCCATTGTTATCATCAACACAG 60.106 40.000 0.00 0.00 38.12 3.66
4597 5074 4.766373 TGCCATTGTTATCATCAACACAGT 59.234 37.500 0.00 0.00 38.12 3.55
4598 5075 5.243507 TGCCATTGTTATCATCAACACAGTT 59.756 36.000 0.00 0.00 38.12 3.16
4599 5076 6.158598 GCCATTGTTATCATCAACACAGTTT 58.841 36.000 0.00 0.00 38.12 2.66
4600 5077 6.089820 GCCATTGTTATCATCAACACAGTTTG 59.910 38.462 0.00 0.00 38.12 2.93
4601 5078 7.147312 CCATTGTTATCATCAACACAGTTTGT 58.853 34.615 0.00 0.00 41.74 2.83
4602 5079 8.296000 CCATTGTTATCATCAACACAGTTTGTA 58.704 33.333 0.00 0.00 37.51 2.41
4603 5080 9.676195 CATTGTTATCATCAACACAGTTTGTAA 57.324 29.630 0.00 0.00 37.51 2.41
4605 5082 9.676195 TTGTTATCATCAACACAGTTTGTAATG 57.324 29.630 0.00 0.44 37.51 1.90
4606 5083 7.807433 TGTTATCATCAACACAGTTTGTAATGC 59.193 33.333 1.62 0.00 37.51 3.56
4607 5084 5.764487 TCATCAACACAGTTTGTAATGCA 57.236 34.783 0.00 0.00 37.51 3.96
4608 5085 6.330004 TCATCAACACAGTTTGTAATGCAT 57.670 33.333 0.00 0.00 37.51 3.96
4609 5086 6.151004 TCATCAACACAGTTTGTAATGCATG 58.849 36.000 0.00 0.00 37.51 4.06
4610 5087 5.512753 TCAACACAGTTTGTAATGCATGT 57.487 34.783 0.00 0.00 37.51 3.21
4611 5088 5.900425 TCAACACAGTTTGTAATGCATGTT 58.100 33.333 0.00 0.00 37.51 2.71
4612 5089 6.336566 TCAACACAGTTTGTAATGCATGTTT 58.663 32.000 0.00 0.00 37.51 2.83
4613 5090 7.484140 TCAACACAGTTTGTAATGCATGTTTA 58.516 30.769 0.00 0.00 37.51 2.01
4614 5091 8.140628 TCAACACAGTTTGTAATGCATGTTTAT 58.859 29.630 0.00 0.00 37.51 1.40
4615 5092 7.872163 ACACAGTTTGTAATGCATGTTTATG 57.128 32.000 0.00 0.00 36.32 1.90
4616 5093 7.656412 ACACAGTTTGTAATGCATGTTTATGA 58.344 30.769 0.00 0.00 36.32 2.15
4617 5094 7.594758 ACACAGTTTGTAATGCATGTTTATGAC 59.405 33.333 0.00 0.00 36.32 3.06
4618 5095 7.809331 CACAGTTTGTAATGCATGTTTATGACT 59.191 33.333 0.00 0.00 36.36 3.41
4619 5096 9.008965 ACAGTTTGTAATGCATGTTTATGACTA 57.991 29.630 0.00 0.00 36.36 2.59
4645 5122 3.348647 TCATCGAATGTGTTGGTCCAT 57.651 42.857 0.00 0.00 0.00 3.41
4649 5126 4.235939 TCGAATGTGTTGGTCCATTTTG 57.764 40.909 0.00 0.00 31.67 2.44
4652 5129 3.641437 ATGTGTTGGTCCATTTTGTCG 57.359 42.857 0.00 0.00 0.00 4.35
4653 5130 1.066303 TGTGTTGGTCCATTTTGTCGC 59.934 47.619 0.00 0.00 0.00 5.19
4662 5146 2.293122 TCCATTTTGTCGCAACTCTTGG 59.707 45.455 0.00 0.00 0.00 3.61
4669 5153 2.093500 TGTCGCAACTCTTGGCTGATAT 60.093 45.455 0.00 0.00 0.00 1.63
4676 5160 4.307032 ACTCTTGGCTGATATGGTTTGT 57.693 40.909 0.00 0.00 0.00 2.83
4677 5161 4.012374 ACTCTTGGCTGATATGGTTTGTG 58.988 43.478 0.00 0.00 0.00 3.33
4678 5162 3.355378 TCTTGGCTGATATGGTTTGTGG 58.645 45.455 0.00 0.00 0.00 4.17
4679 5163 2.897271 TGGCTGATATGGTTTGTGGT 57.103 45.000 0.00 0.00 0.00 4.16
4680 5164 2.722094 TGGCTGATATGGTTTGTGGTC 58.278 47.619 0.00 0.00 0.00 4.02
4681 5165 1.670811 GGCTGATATGGTTTGTGGTCG 59.329 52.381 0.00 0.00 0.00 4.79
4689 5173 1.164041 GGTTTGTGGTCGGTCAGGTG 61.164 60.000 0.00 0.00 0.00 4.00
4831 5315 3.736482 GAGGACTCGTACAGCGGCG 62.736 68.421 0.51 0.51 41.72 6.46
4989 5473 1.619977 GGGTGAAGTGGAGGAGAGCTA 60.620 57.143 0.00 0.00 0.00 3.32
4993 5477 1.040339 AAGTGGAGGAGAGCTAGCCG 61.040 60.000 12.13 0.00 0.00 5.52
5053 5627 8.908786 ATTATACACCATATGAACTGAACTGG 57.091 34.615 3.65 0.00 0.00 4.00
5081 5660 3.880490 TCGATGCCGCCAATAGTTAAAAT 59.120 39.130 0.00 0.00 35.37 1.82
5151 5731 3.323403 TGTGGATCCATTTGTTTGTTCCC 59.677 43.478 19.62 0.05 0.00 3.97
5155 5735 4.222588 GGATCCATTTGTTTGTTCCCATGA 59.777 41.667 6.95 0.00 0.00 3.07
5156 5736 5.104817 GGATCCATTTGTTTGTTCCCATGAT 60.105 40.000 6.95 0.00 0.00 2.45
5157 5737 6.098124 GGATCCATTTGTTTGTTCCCATGATA 59.902 38.462 6.95 0.00 0.00 2.15
5158 5738 7.202029 GGATCCATTTGTTTGTTCCCATGATAT 60.202 37.037 6.95 0.00 0.00 1.63
5159 5739 8.780616 ATCCATTTGTTTGTTCCCATGATATA 57.219 30.769 0.00 0.00 0.00 0.86
5160 5740 8.780616 TCCATTTGTTTGTTCCCATGATATAT 57.219 30.769 0.00 0.00 0.00 0.86
5161 5741 9.211410 TCCATTTGTTTGTTCCCATGATATATT 57.789 29.630 0.00 0.00 0.00 1.28
5228 5808 5.591643 TCAATTTCTTCGTTTCTTCTCCG 57.408 39.130 0.00 0.00 0.00 4.63
5235 5815 0.731855 CGTTTCTTCTCCGACGACCC 60.732 60.000 0.00 0.00 37.69 4.46
5268 5848 0.744771 CTTCTCCCGGCTTTACTGGC 60.745 60.000 0.00 0.00 44.44 4.85
5275 5855 1.002134 GGCTTTACTGGCTCAGGCA 60.002 57.895 0.00 0.00 40.87 4.75
5295 5875 2.033141 CCGGCTGGATGGCTATGG 59.967 66.667 5.28 0.00 39.32 2.74
5296 5876 2.670934 CGGCTGGATGGCTATGGC 60.671 66.667 0.00 0.00 39.32 4.40
5297 5877 2.842058 GGCTGGATGGCTATGGCT 59.158 61.111 0.00 0.00 38.73 4.75
5299 5879 0.035630 GGCTGGATGGCTATGGCTAG 60.036 60.000 0.00 0.00 38.73 3.42
5307 5887 3.688553 GCTATGGCTAGCGACCTTT 57.311 52.632 9.00 0.00 40.95 3.11
5308 5888 2.814280 GCTATGGCTAGCGACCTTTA 57.186 50.000 9.00 0.00 40.95 1.85
5309 5889 3.107642 GCTATGGCTAGCGACCTTTAA 57.892 47.619 9.00 0.00 40.95 1.52
5310 5890 3.665190 GCTATGGCTAGCGACCTTTAAT 58.335 45.455 9.00 0.00 40.95 1.40
5311 5891 4.065789 GCTATGGCTAGCGACCTTTAATT 58.934 43.478 9.00 0.00 40.95 1.40
5312 5892 4.515567 GCTATGGCTAGCGACCTTTAATTT 59.484 41.667 9.00 0.00 40.95 1.82
5313 5893 4.900635 ATGGCTAGCGACCTTTAATTTG 57.099 40.909 9.00 0.00 0.00 2.32
5314 5894 3.013921 TGGCTAGCGACCTTTAATTTGG 58.986 45.455 9.00 0.00 0.00 3.28
5315 5895 3.014623 GGCTAGCGACCTTTAATTTGGT 58.985 45.455 9.00 0.00 39.60 3.67
5316 5896 3.442625 GGCTAGCGACCTTTAATTTGGTT 59.557 43.478 9.00 0.00 36.59 3.67
5317 5897 4.082408 GGCTAGCGACCTTTAATTTGGTTT 60.082 41.667 9.00 0.00 36.59 3.27
5318 5898 4.857037 GCTAGCGACCTTTAATTTGGTTTG 59.143 41.667 0.00 0.00 36.59 2.93
5319 5899 5.335348 GCTAGCGACCTTTAATTTGGTTTGA 60.335 40.000 0.00 0.00 36.59 2.69
5320 5900 5.523438 AGCGACCTTTAATTTGGTTTGAA 57.477 34.783 0.00 0.00 36.59 2.69
5321 5901 5.286438 AGCGACCTTTAATTTGGTTTGAAC 58.714 37.500 0.00 0.00 36.59 3.18
5322 5902 5.068591 AGCGACCTTTAATTTGGTTTGAACT 59.931 36.000 0.00 0.00 36.59 3.01
5323 5903 5.174943 GCGACCTTTAATTTGGTTTGAACTG 59.825 40.000 0.00 0.00 36.59 3.16
5324 5904 6.270064 CGACCTTTAATTTGGTTTGAACTGT 58.730 36.000 0.00 0.00 36.59 3.55
5333 5913 4.698201 TGGTTTGAACTGTAGTGATGGA 57.302 40.909 0.00 0.00 0.00 3.41
5334 5914 4.641396 TGGTTTGAACTGTAGTGATGGAG 58.359 43.478 0.00 0.00 0.00 3.86
5358 5938 0.103572 TTCCCGGTAATAGCGTCTGC 59.896 55.000 11.00 0.00 37.40 4.26
5364 5944 2.629051 GGTAATAGCGTCTGCAAAGGT 58.371 47.619 0.00 0.00 46.23 3.50
5381 5961 5.238583 CAAAGGTAGAGGAAGTCGTTGAAT 58.761 41.667 0.00 0.00 0.00 2.57
5402 5982 6.878923 TGAATCTTCAATACTTTCGGTGTGAT 59.121 34.615 0.00 0.00 33.55 3.06
5428 6008 3.660865 ACTGACTCCACGATGGTTAAAC 58.339 45.455 0.00 0.00 39.03 2.01
5454 6035 7.386851 TGACTCTAGGTAGATTTGTCTTTTGG 58.613 38.462 0.00 0.00 30.66 3.28
5457 6038 8.312564 ACTCTAGGTAGATTTGTCTTTTGGTAC 58.687 37.037 0.00 0.00 0.00 3.34
5470 6051 1.137194 TGGTACGACCATACACGCG 59.863 57.895 3.53 3.53 44.79 6.01
5483 6064 2.279918 ACGCGACTGTGGTCAACC 60.280 61.111 15.93 0.00 42.21 3.77
5484 6065 2.029073 CGCGACTGTGGTCAACCT 59.971 61.111 0.00 0.00 42.21 3.50
5485 6066 2.022129 CGCGACTGTGGTCAACCTC 61.022 63.158 0.00 0.00 42.21 3.85
5486 6067 1.367840 GCGACTGTGGTCAACCTCT 59.632 57.895 0.10 0.00 42.21 3.69
5487 6068 0.601558 GCGACTGTGGTCAACCTCTA 59.398 55.000 0.10 0.00 42.21 2.43
5488 6069 1.204941 GCGACTGTGGTCAACCTCTAT 59.795 52.381 0.10 0.00 42.21 1.98
5489 6070 2.426024 GCGACTGTGGTCAACCTCTATA 59.574 50.000 0.10 0.00 42.21 1.31
5490 6071 3.734293 GCGACTGTGGTCAACCTCTATAC 60.734 52.174 0.10 0.00 42.21 1.47
5520 6104 6.942532 TGTAATATCCTCCAAAGTTCATGC 57.057 37.500 0.00 0.00 0.00 4.06
5522 6106 1.755179 ATCCTCCAAAGTTCATGCCG 58.245 50.000 0.00 0.00 0.00 5.69
5524 6108 1.626321 TCCTCCAAAGTTCATGCCGTA 59.374 47.619 0.00 0.00 0.00 4.02
5534 6118 2.346766 TCATGCCGTATTCCTGCAAT 57.653 45.000 0.00 0.00 38.69 3.56
5540 6124 4.265893 TGCCGTATTCCTGCAATCTAAAA 58.734 39.130 0.00 0.00 30.85 1.52
5553 6137 7.437267 CCTGCAATCTAAAATGGCTTTTCATAG 59.563 37.037 0.00 0.00 36.09 2.23
5555 6139 6.703165 GCAATCTAAAATGGCTTTTCATAGGG 59.297 38.462 0.00 0.00 36.09 3.53
5567 6151 5.566826 GCTTTTCATAGGGTTCTTTTGGGAC 60.567 44.000 0.00 0.00 0.00 4.46
5577 6161 4.202070 GGTTCTTTTGGGACGTGATTTTCA 60.202 41.667 0.00 0.00 0.00 2.69
5578 6162 4.561735 TCTTTTGGGACGTGATTTTCAC 57.438 40.909 0.00 0.00 43.65 3.18
5600 6616 6.701841 TCACGCTATTTGACTCATAATTCTCC 59.298 38.462 0.00 0.00 0.00 3.71
5603 6619 7.439655 ACGCTATTTGACTCATAATTCTCCTTC 59.560 37.037 0.00 0.00 0.00 3.46
5604 6620 7.655328 CGCTATTTGACTCATAATTCTCCTTCT 59.345 37.037 0.00 0.00 0.00 2.85
5605 6621 9.336171 GCTATTTGACTCATAATTCTCCTTCTT 57.664 33.333 0.00 0.00 0.00 2.52
5621 6637 2.849880 TCTTTCTATTTGCATGCGGC 57.150 45.000 14.09 0.00 45.13 6.53
5662 6689 5.390673 GCTTTCTCAATCCTATGCATCATCG 60.391 44.000 0.19 0.00 0.00 3.84
5663 6690 4.879197 TCTCAATCCTATGCATCATCGT 57.121 40.909 0.19 0.00 0.00 3.73
5670 6697 5.077134 TCCTATGCATCATCGTAGGAATG 57.923 43.478 10.58 0.00 46.37 2.67
5707 6734 8.970691 AAATGAGATCCTTTGAAATTTGTACG 57.029 30.769 0.00 0.00 0.00 3.67
5715 6742 8.401046 TCCTTTGAAATTTGTACGAACTTTTG 57.599 30.769 0.00 0.00 0.00 2.44
5716 6743 8.030106 TCCTTTGAAATTTGTACGAACTTTTGT 58.970 29.630 0.00 0.00 0.00 2.83
5746 6773 9.914131 AACAAAAAGCTATTAAGATTCAGTTCC 57.086 29.630 0.00 0.00 29.07 3.62
5747 6774 9.077885 ACAAAAAGCTATTAAGATTCAGTTCCA 57.922 29.630 0.00 0.00 29.07 3.53
5767 6794 4.081254 TCCAGTTCTCTCCACATGATTCAG 60.081 45.833 0.00 0.00 0.00 3.02
5770 6797 4.529769 AGTTCTCTCCACATGATTCAGTGA 59.470 41.667 0.00 0.00 37.97 3.41
5774 6801 7.186570 TCTCTCCACATGATTCAGTGAAATA 57.813 36.000 10.14 2.21 37.97 1.40
5779 6806 9.865321 CTCCACATGATTCAGTGAAATAAAAAT 57.135 29.630 10.14 0.00 37.97 1.82
5819 6846 9.686683 ATCCTATATGTGTTAGAAATAATGGGC 57.313 33.333 0.00 0.00 0.00 5.36
5857 6884 4.806640 TTCTGAAATCTCAAATTGGCCC 57.193 40.909 0.00 0.00 0.00 5.80
5858 6885 2.754552 TCTGAAATCTCAAATTGGCCCG 59.245 45.455 0.00 0.00 0.00 6.13
5870 6897 3.817709 ATTGGCCCGTGAATAAAATGG 57.182 42.857 0.00 0.00 0.00 3.16
5871 6898 2.223803 TGGCCCGTGAATAAAATGGT 57.776 45.000 0.00 0.00 0.00 3.55
5872 6899 1.821753 TGGCCCGTGAATAAAATGGTG 59.178 47.619 0.00 0.00 0.00 4.17
5873 6900 2.096248 GGCCCGTGAATAAAATGGTGA 58.904 47.619 0.00 0.00 0.00 4.02
5874 6901 2.693074 GGCCCGTGAATAAAATGGTGAT 59.307 45.455 0.00 0.00 0.00 3.06
5875 6902 3.132111 GGCCCGTGAATAAAATGGTGATT 59.868 43.478 0.00 0.00 0.00 2.57
5876 6903 4.111916 GCCCGTGAATAAAATGGTGATTG 58.888 43.478 0.00 0.00 0.00 2.67
5877 6904 4.681744 CCCGTGAATAAAATGGTGATTGG 58.318 43.478 0.00 0.00 0.00 3.16
5878 6905 4.159506 CCCGTGAATAAAATGGTGATTGGT 59.840 41.667 0.00 0.00 0.00 3.67
5879 6906 5.101628 CCGTGAATAAAATGGTGATTGGTG 58.898 41.667 0.00 0.00 0.00 4.17
5880 6907 5.101628 CGTGAATAAAATGGTGATTGGTGG 58.898 41.667 0.00 0.00 0.00 4.61
5881 6908 4.869861 GTGAATAAAATGGTGATTGGTGGC 59.130 41.667 0.00 0.00 0.00 5.01
5882 6909 4.776837 TGAATAAAATGGTGATTGGTGGCT 59.223 37.500 0.00 0.00 0.00 4.75
5883 6910 5.105392 TGAATAAAATGGTGATTGGTGGCTC 60.105 40.000 0.00 0.00 0.00 4.70
5884 6911 2.610438 AAATGGTGATTGGTGGCTCT 57.390 45.000 0.00 0.00 0.00 4.09
5885 6912 3.737559 AAATGGTGATTGGTGGCTCTA 57.262 42.857 0.00 0.00 0.00 2.43
5886 6913 3.737559 AATGGTGATTGGTGGCTCTAA 57.262 42.857 0.00 0.00 0.00 2.10
5887 6914 3.737559 ATGGTGATTGGTGGCTCTAAA 57.262 42.857 0.00 0.00 0.00 1.85
5888 6915 3.071874 TGGTGATTGGTGGCTCTAAAG 57.928 47.619 0.00 0.00 0.00 1.85
5889 6916 2.375174 TGGTGATTGGTGGCTCTAAAGT 59.625 45.455 0.00 0.00 0.00 2.66
5890 6917 3.181434 TGGTGATTGGTGGCTCTAAAGTT 60.181 43.478 0.00 0.00 0.00 2.66
5891 6918 3.826729 GGTGATTGGTGGCTCTAAAGTTT 59.173 43.478 0.00 0.00 0.00 2.66
5892 6919 5.007682 GGTGATTGGTGGCTCTAAAGTTTA 58.992 41.667 0.00 0.00 0.00 2.01
5893 6920 5.123979 GGTGATTGGTGGCTCTAAAGTTTAG 59.876 44.000 15.34 15.34 0.00 1.85
5894 6921 4.700213 TGATTGGTGGCTCTAAAGTTTAGC 59.300 41.667 16.46 9.46 35.47 3.09
5895 6922 2.695359 TGGTGGCTCTAAAGTTTAGCG 58.305 47.619 16.46 12.23 37.11 4.26
5896 6923 2.038033 TGGTGGCTCTAAAGTTTAGCGT 59.962 45.455 16.46 0.00 37.11 5.07
5897 6924 2.671888 GGTGGCTCTAAAGTTTAGCGTC 59.328 50.000 16.46 13.05 37.11 5.19
5898 6925 3.323243 GTGGCTCTAAAGTTTAGCGTCA 58.677 45.455 14.35 14.35 37.11 4.35
5899 6926 3.123116 GTGGCTCTAAAGTTTAGCGTCAC 59.877 47.826 25.99 25.99 37.11 3.67
5900 6927 3.006537 TGGCTCTAAAGTTTAGCGTCACT 59.993 43.478 14.35 0.00 37.11 3.41
5901 6928 3.995048 GGCTCTAAAGTTTAGCGTCACTT 59.005 43.478 16.46 0.00 37.11 3.16
5902 6929 4.091655 GGCTCTAAAGTTTAGCGTCACTTC 59.908 45.833 16.46 0.00 37.11 3.01
5903 6930 4.201504 GCTCTAAAGTTTAGCGTCACTTCG 60.202 45.833 16.46 0.00 31.79 3.79
5904 6931 5.112220 TCTAAAGTTTAGCGTCACTTCGA 57.888 39.130 16.46 0.00 31.79 3.71
5905 6932 5.522456 TCTAAAGTTTAGCGTCACTTCGAA 58.478 37.500 16.46 0.00 31.79 3.71
5906 6933 5.978919 TCTAAAGTTTAGCGTCACTTCGAAA 59.021 36.000 16.46 0.00 31.79 3.46
5907 6934 4.710528 AAGTTTAGCGTCACTTCGAAAG 57.289 40.909 0.00 0.00 0.00 2.62
5908 6935 3.714391 AGTTTAGCGTCACTTCGAAAGT 58.286 40.909 0.00 0.00 44.06 2.66
5909 6936 4.117685 AGTTTAGCGTCACTTCGAAAGTT 58.882 39.130 0.00 0.00 40.46 2.66
5910 6937 4.025979 AGTTTAGCGTCACTTCGAAAGTTG 60.026 41.667 0.00 0.00 40.46 3.16
5911 6938 2.218953 AGCGTCACTTCGAAAGTTGA 57.781 45.000 0.00 0.00 40.46 3.18
5912 6939 2.128035 AGCGTCACTTCGAAAGTTGAG 58.872 47.619 0.00 0.00 40.46 3.02
5913 6940 1.192534 GCGTCACTTCGAAAGTTGAGG 59.807 52.381 14.72 14.72 40.46 3.86
5914 6941 2.739292 CGTCACTTCGAAAGTTGAGGA 58.261 47.619 14.20 1.71 40.46 3.71
5915 6942 2.726760 CGTCACTTCGAAAGTTGAGGAG 59.273 50.000 14.20 0.00 40.46 3.69
5916 6943 3.060602 GTCACTTCGAAAGTTGAGGAGG 58.939 50.000 0.00 0.00 40.46 4.30
5917 6944 2.698797 TCACTTCGAAAGTTGAGGAGGT 59.301 45.455 0.00 0.00 40.46 3.85
5918 6945 2.802816 CACTTCGAAAGTTGAGGAGGTG 59.197 50.000 0.00 0.00 40.46 4.00
5919 6946 2.434702 ACTTCGAAAGTTGAGGAGGTGT 59.565 45.455 0.00 0.00 39.04 4.16
5920 6947 2.526304 TCGAAAGTTGAGGAGGTGTG 57.474 50.000 0.00 0.00 0.00 3.82
5921 6948 2.036387 TCGAAAGTTGAGGAGGTGTGA 58.964 47.619 0.00 0.00 0.00 3.58
5922 6949 2.035961 TCGAAAGTTGAGGAGGTGTGAG 59.964 50.000 0.00 0.00 0.00 3.51
5923 6950 2.035961 CGAAAGTTGAGGAGGTGTGAGA 59.964 50.000 0.00 0.00 0.00 3.27
5924 6951 3.306364 CGAAAGTTGAGGAGGTGTGAGAT 60.306 47.826 0.00 0.00 0.00 2.75
5925 6952 3.971245 AAGTTGAGGAGGTGTGAGATC 57.029 47.619 0.00 0.00 0.00 2.75
5926 6953 3.182887 AGTTGAGGAGGTGTGAGATCT 57.817 47.619 0.00 0.00 0.00 2.75
5927 6954 3.096092 AGTTGAGGAGGTGTGAGATCTC 58.904 50.000 16.21 16.21 0.00 2.75
5928 6955 3.096092 GTTGAGGAGGTGTGAGATCTCT 58.904 50.000 22.95 2.53 0.00 3.10
5929 6956 3.464720 TGAGGAGGTGTGAGATCTCTT 57.535 47.619 22.95 4.40 0.00 2.85
5930 6957 4.592997 TGAGGAGGTGTGAGATCTCTTA 57.407 45.455 22.95 9.55 0.00 2.10
5931 6958 5.136068 TGAGGAGGTGTGAGATCTCTTAT 57.864 43.478 22.95 5.38 0.00 1.73
5932 6959 6.267492 TGAGGAGGTGTGAGATCTCTTATA 57.733 41.667 22.95 0.00 0.00 0.98
5933 6960 6.065374 TGAGGAGGTGTGAGATCTCTTATAC 58.935 44.000 22.95 13.24 0.00 1.47
5934 6961 6.019656 AGGAGGTGTGAGATCTCTTATACA 57.980 41.667 22.95 15.60 0.00 2.29
5935 6962 6.068010 AGGAGGTGTGAGATCTCTTATACAG 58.932 44.000 22.95 0.00 0.00 2.74
5936 6963 5.830991 GGAGGTGTGAGATCTCTTATACAGT 59.169 44.000 22.95 9.27 0.00 3.55
5937 6964 6.238897 GGAGGTGTGAGATCTCTTATACAGTG 60.239 46.154 22.95 0.00 0.00 3.66
5938 6965 5.596361 AGGTGTGAGATCTCTTATACAGTGG 59.404 44.000 22.95 0.00 0.00 4.00
5939 6966 5.221342 GGTGTGAGATCTCTTATACAGTGGG 60.221 48.000 22.95 0.00 0.00 4.61
5940 6967 5.361285 GTGTGAGATCTCTTATACAGTGGGT 59.639 44.000 22.95 0.00 0.00 4.51
5941 6968 5.958380 TGTGAGATCTCTTATACAGTGGGTT 59.042 40.000 22.95 0.00 0.00 4.11
5942 6969 6.096987 TGTGAGATCTCTTATACAGTGGGTTC 59.903 42.308 22.95 0.00 0.00 3.62
5943 6970 6.322712 GTGAGATCTCTTATACAGTGGGTTCT 59.677 42.308 22.95 0.00 0.00 3.01
5944 6971 6.547880 TGAGATCTCTTATACAGTGGGTTCTC 59.452 42.308 22.95 0.00 0.00 2.87
5945 6972 5.836358 AGATCTCTTATACAGTGGGTTCTCC 59.164 44.000 0.00 0.00 0.00 3.71
5956 6983 1.078426 GGTTCTCCCCATCACCACG 60.078 63.158 0.00 0.00 0.00 4.94
5957 6984 1.677552 GTTCTCCCCATCACCACGT 59.322 57.895 0.00 0.00 0.00 4.49
5958 6985 0.673644 GTTCTCCCCATCACCACGTG 60.674 60.000 9.08 9.08 34.45 4.49
5959 6986 0.834261 TTCTCCCCATCACCACGTGA 60.834 55.000 19.30 0.00 46.90 4.35
5960 6987 1.079127 CTCCCCATCACCACGTGAC 60.079 63.158 19.30 0.00 45.65 3.67
5961 6988 1.826340 CTCCCCATCACCACGTGACA 61.826 60.000 19.30 0.00 45.65 3.58
5962 6989 1.198094 TCCCCATCACCACGTGACAT 61.198 55.000 19.30 2.34 45.65 3.06
5963 6990 0.744414 CCCCATCACCACGTGACATC 60.744 60.000 19.30 0.00 45.65 3.06
5964 6991 0.250234 CCCATCACCACGTGACATCT 59.750 55.000 19.30 0.00 45.65 2.90
5965 6992 1.362768 CCATCACCACGTGACATCTG 58.637 55.000 19.30 7.55 45.65 2.90
5966 6993 1.338105 CCATCACCACGTGACATCTGT 60.338 52.381 19.30 1.46 45.65 3.41
5967 6994 1.728425 CATCACCACGTGACATCTGTG 59.272 52.381 19.30 15.13 45.65 3.66
5973 7000 1.195448 CACGTGACATCTGTGGAAAGC 59.805 52.381 10.90 0.00 0.00 3.51
5974 7001 1.202639 ACGTGACATCTGTGGAAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
372 414 4.082571 GGTTTGGTCATCTGAATTGTGAGG 60.083 45.833 0.00 0.00 0.00 3.86
473 523 5.975693 TTGTTTTAGTCTAGGGGCAATTG 57.024 39.130 0.00 0.00 0.00 2.32
477 527 4.794334 TGTTTTGTTTTAGTCTAGGGGCA 58.206 39.130 0.00 0.00 0.00 5.36
478 528 5.777850 TTGTTTTGTTTTAGTCTAGGGGC 57.222 39.130 0.00 0.00 0.00 5.80
769 828 1.133325 GCAGGAGAGAGACAGGGGATA 60.133 57.143 0.00 0.00 0.00 2.59
770 829 0.398381 GCAGGAGAGAGACAGGGGAT 60.398 60.000 0.00 0.00 0.00 3.85
846 940 1.509703 GACGTCCAAACCTGAGTTCC 58.490 55.000 3.51 0.00 34.19 3.62
992 1089 2.758089 GCTGTCTCCATGCCAAGCG 61.758 63.158 0.00 0.00 0.00 4.68
1031 1128 0.979665 CTCCTTCTTGGTCTCTGGCA 59.020 55.000 0.00 0.00 37.07 4.92
1033 1130 0.251634 GGCTCCTTCTTGGTCTCTGG 59.748 60.000 0.00 0.00 37.07 3.86
1075 1172 2.435586 CTTGGTCTCTGGCGCAGG 60.436 66.667 10.83 0.09 31.51 4.85
1076 1173 1.004560 TTCTTGGTCTCTGGCGCAG 60.005 57.895 10.83 4.99 0.00 5.18
1077 1174 1.004560 CTTCTTGGTCTCTGGCGCA 60.005 57.895 10.83 0.00 0.00 6.09
1078 1175 1.743252 CCTTCTTGGTCTCTGGCGC 60.743 63.158 0.00 0.00 0.00 6.53
1079 1176 1.078848 CCCTTCTTGGTCTCTGGCG 60.079 63.158 0.00 0.00 0.00 5.69
1080 1177 1.301293 CCCCTTCTTGGTCTCTGGC 59.699 63.158 0.00 0.00 0.00 4.85
1081 1178 1.301293 GCCCCTTCTTGGTCTCTGG 59.699 63.158 0.00 0.00 0.00 3.86
1556 1695 5.662657 TGATGATGGATAAGTGAGGAAGTGA 59.337 40.000 0.00 0.00 0.00 3.41
1567 1706 9.152595 CAACTCTGTATGATGATGATGGATAAG 57.847 37.037 0.00 0.00 0.00 1.73
1605 1744 5.622770 TTTCTCGGAAATTTGTTAGGAGC 57.377 39.130 0.00 0.00 0.00 4.70
1716 1856 4.141846 CCCCGGATATGTCCATCTAATCTG 60.142 50.000 0.73 0.00 45.37 2.90
1755 1895 1.208776 CTCTCAGCCATCACCACATGA 59.791 52.381 0.00 0.00 43.13 3.07
1791 1931 0.033894 GTCCCTCGGTCTCTTCCTCT 60.034 60.000 0.00 0.00 0.00 3.69
1897 2044 2.247267 GTGTTTGGTTCGGCGTCG 59.753 61.111 1.15 1.15 37.82 5.12
1902 2049 4.676586 GGCGCGTGTTTGGTTCGG 62.677 66.667 8.43 0.00 0.00 4.30
1964 2111 3.380004 AGTCAGTCAGTCTCGATGATTCC 59.620 47.826 0.00 0.00 0.00 3.01
1987 2139 5.248640 AGTGTTGCATAACTACTTCAGCAT 58.751 37.500 0.12 0.00 37.68 3.79
1995 2154 6.300354 AGTTCACAAGTGTTGCATAACTAC 57.700 37.500 2.49 0.00 37.68 2.73
1996 2155 7.214381 ACTAGTTCACAAGTGTTGCATAACTA 58.786 34.615 2.49 5.25 37.68 2.24
2019 2178 7.878127 ACTTGTCATAACAACTTGCATACTACT 59.122 33.333 0.00 0.00 40.45 2.57
2020 2179 7.957484 CACTTGTCATAACAACTTGCATACTAC 59.043 37.037 0.00 0.00 40.45 2.73
2022 2181 6.486657 ACACTTGTCATAACAACTTGCATACT 59.513 34.615 0.00 0.00 40.45 2.12
2038 2198 6.439375 AGGTACACTTGGATATACACTTGTCA 59.561 38.462 4.20 0.00 0.00 3.58
2040 2200 6.212791 ACAGGTACACTTGGATATACACTTGT 59.787 38.462 6.00 6.00 0.00 3.16
2042 2202 6.127140 GGACAGGTACACTTGGATATACACTT 60.127 42.308 0.00 0.00 0.00 3.16
2050 2210 1.279271 GCTGGACAGGTACACTTGGAT 59.721 52.381 1.01 0.00 0.00 3.41
2055 2232 1.344763 GAGTTGCTGGACAGGTACACT 59.655 52.381 1.01 0.00 0.00 3.55
2070 2247 2.423185 TGCACCACTGAAAACAGAGTTG 59.577 45.455 0.00 0.00 0.00 3.16
2071 2248 2.684881 CTGCACCACTGAAAACAGAGTT 59.315 45.455 0.00 0.00 0.00 3.01
2140 2318 4.023291 TCAAAGGGCACTTCTTCACTTTT 58.977 39.130 0.00 0.00 35.41 2.27
2142 2320 3.297134 TCAAAGGGCACTTCTTCACTT 57.703 42.857 0.00 0.00 35.41 3.16
2143 2321 3.515602 ATCAAAGGGCACTTCTTCACT 57.484 42.857 0.00 0.00 35.41 3.41
2144 2322 4.037923 TGAAATCAAAGGGCACTTCTTCAC 59.962 41.667 0.00 0.00 35.41 3.18
2145 2323 4.214310 TGAAATCAAAGGGCACTTCTTCA 58.786 39.130 0.00 6.53 35.41 3.02
2151 2347 1.928868 CCCTGAAATCAAAGGGCACT 58.071 50.000 0.00 0.00 46.63 4.40
2166 2362 6.827727 ACTACAAGTAAATATACAGGCCCTG 58.172 40.000 9.83 9.83 37.52 4.45
2167 2363 7.092578 ACAACTACAAGTAAATATACAGGCCCT 60.093 37.037 0.00 0.00 34.29 5.19
2169 2365 9.257651 CTACAACTACAAGTAAATATACAGGCC 57.742 37.037 0.00 0.00 34.29 5.19
2222 2424 2.416547 CTGCAAACCAAGTAGTCCGATG 59.583 50.000 0.00 0.00 0.00 3.84
2277 2479 2.224572 TGCCTTTGCAGCAAAATCCATT 60.225 40.909 20.95 0.00 44.23 3.16
2298 2500 6.686126 GCACCTTATATGCCATTCAAACCATT 60.686 38.462 0.00 0.00 37.08 3.16
2342 2544 8.721478 GCAACTTCACATATAGTTTTCTCTGAA 58.279 33.333 0.00 0.00 32.50 3.02
2372 2574 1.676006 ACCACTTTCAGAAAAGCACCG 59.324 47.619 0.00 0.00 44.82 4.94
2378 2580 5.888724 TGTATTGGTGACCACTTTCAGAAAA 59.111 36.000 2.46 0.00 30.78 2.29
2425 2629 3.974642 ACCCAGACTAGTGTTTTCCTCTT 59.025 43.478 0.00 0.00 0.00 2.85
2426 2630 3.325135 CACCCAGACTAGTGTTTTCCTCT 59.675 47.826 0.00 0.00 0.00 3.69
2486 2690 5.904362 AGCAACAGTTCAGTTCTTTTTCT 57.096 34.783 0.00 0.00 0.00 2.52
2487 2691 6.325596 AGAAGCAACAGTTCAGTTCTTTTTC 58.674 36.000 0.00 0.00 0.00 2.29
2553 2796 6.373005 TTTGATCAGATGTTAGGTCCTTGA 57.627 37.500 0.00 0.00 0.00 3.02
2724 2968 1.957177 TGAGGTGTAAAATTTGCGCCA 59.043 42.857 24.16 5.87 46.68 5.69
2924 3168 3.064958 CACCATTAGCAGACAGAATGCAG 59.935 47.826 0.00 0.00 46.31 4.41
3069 3431 7.703197 GTGCATATTCACACATCATTCATTGAA 59.297 33.333 0.75 0.75 36.07 2.69
3122 3484 6.644248 AACCAATTTTCTACCACAACTACC 57.356 37.500 0.00 0.00 0.00 3.18
3203 3580 5.120399 TCTTAGTTTTCACCAGCTTTCGAA 58.880 37.500 0.00 0.00 0.00 3.71
3212 3589 6.055588 CCTCTCTGTTTCTTAGTTTTCACCA 58.944 40.000 0.00 0.00 0.00 4.17
3229 3606 7.360438 CCGTTTTCTTCATTTTCTACCTCTCTG 60.360 40.741 0.00 0.00 0.00 3.35
3253 3632 1.857837 GTGTGGTTTTGATTGCAACCG 59.142 47.619 0.00 0.00 44.88 4.44
3261 3640 4.927978 TTCGATTTGGTGTGGTTTTGAT 57.072 36.364 0.00 0.00 0.00 2.57
3273 3652 7.298122 GTGGCAGTACATATATTTCGATTTGG 58.702 38.462 0.00 0.00 0.00 3.28
3388 3775 5.840243 TTCCATTACATTTCCTGCATCTG 57.160 39.130 0.00 0.00 0.00 2.90
3432 3821 4.567959 GCACATAAATTCCATGCAACTTCC 59.432 41.667 0.00 0.00 36.30 3.46
3476 3865 5.656416 TGGAAATTTGAAGGACACAGAGTTT 59.344 36.000 0.00 0.00 0.00 2.66
3480 3869 4.952957 TGTTGGAAATTTGAAGGACACAGA 59.047 37.500 0.00 0.00 0.00 3.41
3481 3870 5.261209 TGTTGGAAATTTGAAGGACACAG 57.739 39.130 0.00 0.00 0.00 3.66
3490 3880 6.041511 CACACATCAGTTGTTGGAAATTTGA 58.958 36.000 0.00 0.00 36.00 2.69
3530 3920 6.299141 ACGGGCTAGATGTTTATCAAATGAT 58.701 36.000 0.00 1.01 35.70 2.45
3531 3921 5.680619 ACGGGCTAGATGTTTATCAAATGA 58.319 37.500 0.00 0.00 35.70 2.57
3532 3922 5.527214 TGACGGGCTAGATGTTTATCAAATG 59.473 40.000 0.00 0.00 35.70 2.32
3580 3970 1.360192 GCCCTCACAGTGTGCAAAC 59.640 57.895 18.80 0.00 32.98 2.93
3596 4011 5.298347 GGTACTACAGTATCAGAATTGGCC 58.702 45.833 0.00 0.00 32.07 5.36
3624 4039 6.612247 TTCTCAAAACTAGACAAATTCGCA 57.388 33.333 0.00 0.00 0.00 5.10
3662 4078 2.365582 CCTATTGTACAGGTGGCCAAC 58.634 52.381 14.82 14.82 0.00 3.77
3664 4080 0.254747 GCCTATTGTACAGGTGGCCA 59.745 55.000 18.43 0.00 35.45 5.36
3673 4089 5.746721 CCCTTTTTATTTGCGCCTATTGTAC 59.253 40.000 4.18 0.00 0.00 2.90
3716 4132 4.072131 CCCTTTTTCTCCTGTTGATCGAA 58.928 43.478 0.00 0.00 0.00 3.71
3718 4134 3.189287 CACCCTTTTTCTCCTGTTGATCG 59.811 47.826 0.00 0.00 0.00 3.69
3719 4135 4.145052 ACACCCTTTTTCTCCTGTTGATC 58.855 43.478 0.00 0.00 0.00 2.92
3720 4136 4.184649 ACACCCTTTTTCTCCTGTTGAT 57.815 40.909 0.00 0.00 0.00 2.57
3721 4137 3.662759 ACACCCTTTTTCTCCTGTTGA 57.337 42.857 0.00 0.00 0.00 3.18
3722 4138 3.253432 GCTACACCCTTTTTCTCCTGTTG 59.747 47.826 0.00 0.00 0.00 3.33
3723 4139 3.117663 TGCTACACCCTTTTTCTCCTGTT 60.118 43.478 0.00 0.00 0.00 3.16
3725 4141 3.140325 TGCTACACCCTTTTTCTCCTG 57.860 47.619 0.00 0.00 0.00 3.86
3726 4142 3.138468 AGTTGCTACACCCTTTTTCTCCT 59.862 43.478 0.13 0.00 0.00 3.69
3729 4145 4.164843 TCAGTTGCTACACCCTTTTTCT 57.835 40.909 0.13 0.00 0.00 2.52
3730 4146 4.911514 TTCAGTTGCTACACCCTTTTTC 57.088 40.909 0.13 0.00 0.00 2.29
3739 4157 3.814625 TCATGTGGTTTCAGTTGCTACA 58.185 40.909 0.13 0.00 0.00 2.74
3758 4176 1.266718 GGCACACTCATTTCGCTTTCA 59.733 47.619 0.00 0.00 0.00 2.69
3778 4196 2.184448 CTAAATCAAACAATGGCGGCG 58.816 47.619 0.51 0.51 0.00 6.46
3788 4206 8.228464 GTGACTTGCCTAAGTACTAAATCAAAC 58.772 37.037 0.00 0.00 46.79 2.93
3794 4212 6.041182 TGACAGTGACTTGCCTAAGTACTAAA 59.959 38.462 0.00 0.00 46.79 1.85
3797 4215 3.895656 TGACAGTGACTTGCCTAAGTACT 59.104 43.478 0.00 0.00 46.79 2.73
3798 4216 4.238514 CTGACAGTGACTTGCCTAAGTAC 58.761 47.826 0.00 0.00 46.79 2.73
3799 4217 3.258372 CCTGACAGTGACTTGCCTAAGTA 59.742 47.826 0.00 0.00 46.79 2.24
3867 4290 4.323336 CCACAAAATTTCGAGGCATTTACG 59.677 41.667 0.00 0.00 0.00 3.18
3877 4300 3.954904 TCCCACTTTCCACAAAATTTCGA 59.045 39.130 0.00 0.00 0.00 3.71
3886 4309 3.650942 ACTATCAGTTCCCACTTTCCACA 59.349 43.478 0.00 0.00 0.00 4.17
3932 4355 9.950680 CTTATGGAAAATACGCACATAAATTCT 57.049 29.630 0.00 0.00 34.67 2.40
3945 4368 6.480320 ACGACTGAGATGCTTATGGAAAATAC 59.520 38.462 0.00 0.00 0.00 1.89
3957 4380 1.107114 CCAGGTACGACTGAGATGCT 58.893 55.000 7.83 0.00 40.97 3.79
4002 4431 3.575256 TGGTAGGTCGCCATCGTTTATAT 59.425 43.478 0.00 0.00 36.96 0.86
4011 4441 2.487265 GGAATGATTGGTAGGTCGCCAT 60.487 50.000 0.00 0.00 35.71 4.40
4021 4451 4.262592 GGCAGAAAAGTTGGAATGATTGGT 60.263 41.667 0.00 0.00 0.00 3.67
4143 4597 7.746475 CGAAGTTAAATCAGGAATTCAGAACAC 59.254 37.037 7.93 1.75 0.00 3.32
4149 4624 6.567687 TTGCGAAGTTAAATCAGGAATTCA 57.432 33.333 7.93 0.00 0.00 2.57
4185 4661 3.243535 TGGTGCAGATCGAGACATATGTC 60.244 47.826 25.47 25.47 45.08 3.06
4188 4664 2.288702 GCTGGTGCAGATCGAGACATAT 60.289 50.000 0.00 0.00 39.41 1.78
4204 4680 4.012374 ACGATTGATGATGAAAAGCTGGT 58.988 39.130 0.00 0.00 0.00 4.00
4222 4698 5.499139 AACACTGAAACATCAAACACGAT 57.501 34.783 0.00 0.00 0.00 3.73
4372 4849 2.049802 TCGGTCGGCGTGAAAGAC 60.050 61.111 6.85 0.00 0.00 3.01
4498 4975 6.545666 ACAACAGTTAATTGATCACCTGAACA 59.454 34.615 4.81 0.00 0.00 3.18
4516 4993 9.828039 AGTACTAGCTTTTAAAGTAACAACAGT 57.172 29.630 6.57 2.98 0.00 3.55
4518 4995 9.603921 ACAGTACTAGCTTTTAAAGTAACAACA 57.396 29.630 6.57 0.00 0.00 3.33
4531 5008 9.464714 CATCGATGTAAATACAGTACTAGCTTT 57.535 33.333 17.50 0.00 39.92 3.51
4532 5009 8.847196 TCATCGATGTAAATACAGTACTAGCTT 58.153 33.333 24.09 0.00 39.92 3.74
4533 5010 8.392372 TCATCGATGTAAATACAGTACTAGCT 57.608 34.615 24.09 0.00 39.92 3.32
4534 5011 9.627395 ATTCATCGATGTAAATACAGTACTAGC 57.373 33.333 24.09 0.00 39.92 3.42
4540 5017 9.770097 ATGAGAATTCATCGATGTAAATACAGT 57.230 29.630 24.09 3.75 39.94 3.55
4546 5023 8.837788 AGCATATGAGAATTCATCGATGTAAA 57.162 30.769 24.09 13.12 42.97 2.01
4553 5030 5.063186 GGCAGTAGCATATGAGAATTCATCG 59.937 44.000 6.97 0.00 42.15 3.84
4561 5038 4.694760 ACAATGGCAGTAGCATATGAGA 57.305 40.909 6.97 0.00 44.61 3.27
4565 5042 7.170277 TGATGATAACAATGGCAGTAGCATAT 58.830 34.615 0.00 0.00 44.61 1.78
4568 5045 4.779696 TGATGATAACAATGGCAGTAGCA 58.220 39.130 0.00 0.00 44.61 3.49
4569 5046 5.066375 TGTTGATGATAACAATGGCAGTAGC 59.934 40.000 0.00 0.00 37.60 3.58
4570 5047 6.093909 TGTGTTGATGATAACAATGGCAGTAG 59.906 38.462 0.00 0.00 41.75 2.57
4575 5052 5.314923 ACTGTGTTGATGATAACAATGGC 57.685 39.130 0.00 0.00 41.75 4.40
4579 5056 9.676195 CATTACAAACTGTGTTGATGATAACAA 57.324 29.630 8.86 0.00 41.75 2.83
4580 5057 7.807433 GCATTACAAACTGTGTTGATGATAACA 59.193 33.333 8.86 0.00 41.98 2.41
4581 5058 7.807433 TGCATTACAAACTGTGTTGATGATAAC 59.193 33.333 8.86 0.00 41.98 1.89
4582 5059 7.880105 TGCATTACAAACTGTGTTGATGATAA 58.120 30.769 8.86 0.78 41.98 1.75
4583 5060 7.446001 TGCATTACAAACTGTGTTGATGATA 57.554 32.000 8.86 0.00 41.98 2.15
4585 5062 5.764487 TGCATTACAAACTGTGTTGATGA 57.236 34.783 8.86 0.00 41.98 2.92
4586 5063 5.921976 ACATGCATTACAAACTGTGTTGATG 59.078 36.000 0.00 0.00 41.98 3.07
4587 5064 6.088016 ACATGCATTACAAACTGTGTTGAT 57.912 33.333 0.00 0.00 41.98 2.57
4588 5065 5.512753 ACATGCATTACAAACTGTGTTGA 57.487 34.783 0.00 0.00 41.98 3.18
4589 5066 6.586868 AAACATGCATTACAAACTGTGTTG 57.413 33.333 0.00 0.00 41.98 3.33
4591 5068 7.594758 GTCATAAACATGCATTACAAACTGTGT 59.405 33.333 0.00 0.00 44.82 3.72
4592 5069 7.809331 AGTCATAAACATGCATTACAAACTGTG 59.191 33.333 0.00 0.00 0.00 3.66
4593 5070 7.885297 AGTCATAAACATGCATTACAAACTGT 58.115 30.769 0.00 0.00 0.00 3.55
4621 5098 4.339530 TGGACCAACACATTCGATGAAAAA 59.660 37.500 0.00 0.00 0.00 1.94
4622 5099 3.885901 TGGACCAACACATTCGATGAAAA 59.114 39.130 0.00 0.00 0.00 2.29
4623 5100 3.481453 TGGACCAACACATTCGATGAAA 58.519 40.909 0.00 0.00 0.00 2.69
4624 5101 3.133141 TGGACCAACACATTCGATGAA 57.867 42.857 0.00 0.00 0.00 2.57
4625 5102 2.849294 TGGACCAACACATTCGATGA 57.151 45.000 0.00 0.00 0.00 2.92
4626 5103 4.439305 AAATGGACCAACACATTCGATG 57.561 40.909 0.00 0.00 36.36 3.84
4627 5104 4.280677 ACAAAATGGACCAACACATTCGAT 59.719 37.500 0.00 0.00 36.36 3.59
4628 5105 3.634448 ACAAAATGGACCAACACATTCGA 59.366 39.130 0.00 0.00 36.36 3.71
4629 5106 3.976169 ACAAAATGGACCAACACATTCG 58.024 40.909 0.00 0.00 36.36 3.34
4630 5107 3.980775 CGACAAAATGGACCAACACATTC 59.019 43.478 0.00 0.00 36.36 2.67
4631 5108 3.798548 GCGACAAAATGGACCAACACATT 60.799 43.478 0.00 0.00 38.85 2.71
4632 5109 2.288152 GCGACAAAATGGACCAACACAT 60.288 45.455 0.00 0.00 0.00 3.21
4633 5110 1.066303 GCGACAAAATGGACCAACACA 59.934 47.619 0.00 0.00 0.00 3.72
4634 5111 1.066303 TGCGACAAAATGGACCAACAC 59.934 47.619 0.00 0.00 0.00 3.32
4637 5114 2.028130 AGTTGCGACAAAATGGACCAA 58.972 42.857 6.90 0.00 0.00 3.67
4639 5116 1.880027 AGAGTTGCGACAAAATGGACC 59.120 47.619 6.90 0.00 0.00 4.46
4642 5119 2.664916 CCAAGAGTTGCGACAAAATGG 58.335 47.619 6.90 5.43 0.00 3.16
4645 5122 1.065401 CAGCCAAGAGTTGCGACAAAA 59.935 47.619 6.90 0.00 0.00 2.44
4649 5126 2.010145 TATCAGCCAAGAGTTGCGAC 57.990 50.000 0.00 0.00 0.00 5.19
4652 5129 2.648059 ACCATATCAGCCAAGAGTTGC 58.352 47.619 0.00 0.00 0.00 4.17
4653 5130 4.460382 ACAAACCATATCAGCCAAGAGTTG 59.540 41.667 0.00 0.00 0.00 3.16
4662 5146 1.670811 CCGACCACAAACCATATCAGC 59.329 52.381 0.00 0.00 0.00 4.26
4669 5153 1.147376 CCTGACCGACCACAAACCA 59.853 57.895 0.00 0.00 0.00 3.67
4676 5160 3.238497 CCACCACCTGACCGACCA 61.238 66.667 0.00 0.00 0.00 4.02
4677 5161 3.239253 ACCACCACCTGACCGACC 61.239 66.667 0.00 0.00 0.00 4.79
4678 5162 2.030562 CACCACCACCTGACCGAC 59.969 66.667 0.00 0.00 0.00 4.79
4679 5163 3.238497 CCACCACCACCTGACCGA 61.238 66.667 0.00 0.00 0.00 4.69
4680 5164 4.329545 CCCACCACCACCTGACCG 62.330 72.222 0.00 0.00 0.00 4.79
4681 5165 2.411765 CTTCCCACCACCACCTGACC 62.412 65.000 0.00 0.00 0.00 4.02
4941 5425 4.035102 GGGACTTTGGCCGCCTCT 62.035 66.667 11.61 0.00 0.00 3.69
4977 5461 2.123683 CCGGCTAGCTCTCCTCCA 60.124 66.667 15.72 0.00 0.00 3.86
5053 5627 0.882042 ATTGGCGGCATCGATCAGTC 60.882 55.000 14.32 0.00 39.00 3.51
5202 5782 7.018235 GGAGAAGAAACGAAGAAATTGATCAC 58.982 38.462 0.00 0.00 0.00 3.06
5210 5790 3.047796 CGTCGGAGAAGAAACGAAGAAA 58.952 45.455 0.00 0.00 38.59 2.52
5246 5826 2.159085 CCAGTAAAGCCGGGAGAAGTAG 60.159 54.545 2.18 0.00 0.00 2.57
5254 5834 1.450312 CTGAGCCAGTAAAGCCGGG 60.450 63.158 2.18 0.00 0.00 5.73
5278 5858 2.033141 CCATAGCCATCCAGCCGG 59.967 66.667 0.00 0.00 0.00 6.13
5279 5859 1.830587 TAGCCATAGCCATCCAGCCG 61.831 60.000 0.00 0.00 41.25 5.52
5280 5860 0.035630 CTAGCCATAGCCATCCAGCC 60.036 60.000 0.00 0.00 41.25 4.85
5291 5871 4.819630 CCAAATTAAAGGTCGCTAGCCATA 59.180 41.667 9.66 0.00 0.00 2.74
5292 5872 3.632145 CCAAATTAAAGGTCGCTAGCCAT 59.368 43.478 9.66 0.00 0.00 4.40
5294 5874 3.014623 ACCAAATTAAAGGTCGCTAGCC 58.985 45.455 9.66 0.00 30.79 3.93
5295 5875 4.696899 AACCAAATTAAAGGTCGCTAGC 57.303 40.909 4.06 4.06 37.07 3.42
5296 5876 6.249035 TCAAACCAAATTAAAGGTCGCTAG 57.751 37.500 0.00 0.00 37.07 3.42
5297 5877 6.263617 AGTTCAAACCAAATTAAAGGTCGCTA 59.736 34.615 0.00 0.00 37.07 4.26
5299 5879 5.174943 CAGTTCAAACCAAATTAAAGGTCGC 59.825 40.000 0.00 0.00 37.07 5.19
5301 5881 8.410912 ACTACAGTTCAAACCAAATTAAAGGTC 58.589 33.333 0.00 0.00 37.07 3.85
5302 5882 8.194769 CACTACAGTTCAAACCAAATTAAAGGT 58.805 33.333 0.00 0.00 40.61 3.50
5304 5884 9.965824 ATCACTACAGTTCAAACCAAATTAAAG 57.034 29.630 0.00 0.00 0.00 1.85
5305 5885 9.743057 CATCACTACAGTTCAAACCAAATTAAA 57.257 29.630 0.00 0.00 0.00 1.52
5306 5886 8.356657 CCATCACTACAGTTCAAACCAAATTAA 58.643 33.333 0.00 0.00 0.00 1.40
5307 5887 7.721842 TCCATCACTACAGTTCAAACCAAATTA 59.278 33.333 0.00 0.00 0.00 1.40
5308 5888 6.549364 TCCATCACTACAGTTCAAACCAAATT 59.451 34.615 0.00 0.00 0.00 1.82
5309 5889 6.068010 TCCATCACTACAGTTCAAACCAAAT 58.932 36.000 0.00 0.00 0.00 2.32
5310 5890 5.441500 TCCATCACTACAGTTCAAACCAAA 58.558 37.500 0.00 0.00 0.00 3.28
5311 5891 5.042463 TCCATCACTACAGTTCAAACCAA 57.958 39.130 0.00 0.00 0.00 3.67
5312 5892 4.102524 ACTCCATCACTACAGTTCAAACCA 59.897 41.667 0.00 0.00 0.00 3.67
5313 5893 4.642429 ACTCCATCACTACAGTTCAAACC 58.358 43.478 0.00 0.00 0.00 3.27
5314 5894 5.297547 TGACTCCATCACTACAGTTCAAAC 58.702 41.667 0.00 0.00 29.99 2.93
5315 5895 5.545063 TGACTCCATCACTACAGTTCAAA 57.455 39.130 0.00 0.00 29.99 2.69
5333 5913 1.407979 CGCTATTACCGGGAAGTGACT 59.592 52.381 4.81 0.00 0.00 3.41
5334 5914 1.135721 ACGCTATTACCGGGAAGTGAC 59.864 52.381 4.81 0.00 0.00 3.67
5338 5918 1.868519 GCAGACGCTATTACCGGGAAG 60.869 57.143 4.81 0.00 34.30 3.46
5358 5938 4.252971 TCAACGACTTCCTCTACCTTTG 57.747 45.455 0.00 0.00 0.00 2.77
5364 5944 5.977489 TGAAGATTCAACGACTTCCTCTA 57.023 39.130 0.00 0.00 39.14 2.43
5381 5961 5.869344 CAGATCACACCGAAAGTATTGAAGA 59.131 40.000 0.00 0.00 0.00 2.87
5388 5968 3.056821 CAGTCCAGATCACACCGAAAGTA 60.057 47.826 0.00 0.00 0.00 2.24
5428 6008 7.547370 CCAAAAGACAAATCTACCTAGAGTCAG 59.453 40.741 0.00 0.00 35.50 3.51
5454 6035 0.097674 AGTCGCGTGTATGGTCGTAC 59.902 55.000 5.77 0.00 0.00 3.67
5457 6038 1.154093 ACAGTCGCGTGTATGGTCG 60.154 57.895 5.77 0.00 0.00 4.79
5469 6050 3.695060 AGTATAGAGGTTGACCACAGTCG 59.305 47.826 2.56 0.00 46.74 4.18
5470 6051 6.770746 TTAGTATAGAGGTTGACCACAGTC 57.229 41.667 2.56 0.00 43.83 3.51
5508 6092 3.016736 AGGAATACGGCATGAACTTTGG 58.983 45.455 0.00 0.00 0.00 3.28
5520 6104 5.762045 CCATTTTAGATTGCAGGAATACGG 58.238 41.667 0.00 0.00 0.00 4.02
5522 6106 6.396829 AGCCATTTTAGATTGCAGGAATAC 57.603 37.500 0.00 0.00 0.00 1.89
5524 6108 5.945144 AAGCCATTTTAGATTGCAGGAAT 57.055 34.783 0.00 0.00 0.00 3.01
5534 6118 7.182060 AGAACCCTATGAAAAGCCATTTTAGA 58.818 34.615 0.00 0.00 38.74 2.10
5540 6124 5.046376 CCAAAAGAACCCTATGAAAAGCCAT 60.046 40.000 0.00 0.00 0.00 4.40
5553 6137 1.905637 ATCACGTCCCAAAAGAACCC 58.094 50.000 0.00 0.00 0.00 4.11
5555 6139 4.738252 GTGAAAATCACGTCCCAAAAGAAC 59.262 41.667 0.00 0.00 37.67 3.01
5577 6161 6.821388 AGGAGAATTATGAGTCAAATAGCGT 58.179 36.000 0.00 0.00 0.00 5.07
5578 6162 7.655328 AGAAGGAGAATTATGAGTCAAATAGCG 59.345 37.037 0.00 0.00 0.00 4.26
5579 6163 8.900983 AGAAGGAGAATTATGAGTCAAATAGC 57.099 34.615 0.00 0.00 0.00 2.97
5600 6616 3.111098 GCCGCATGCAAATAGAAAGAAG 58.889 45.455 19.57 0.00 40.77 2.85
5603 6619 1.134753 TGGCCGCATGCAAATAGAAAG 59.865 47.619 19.57 0.00 43.89 2.62
5604 6620 1.180907 TGGCCGCATGCAAATAGAAA 58.819 45.000 19.57 0.00 43.89 2.52
5605 6621 1.401761 ATGGCCGCATGCAAATAGAA 58.598 45.000 19.57 0.00 43.89 2.10
5606 6622 1.879380 GTATGGCCGCATGCAAATAGA 59.121 47.619 19.57 0.00 43.89 1.98
5632 6648 4.826183 GCATAGGATTGAGAAAGCAGGAAT 59.174 41.667 0.00 0.00 0.00 3.01
5634 6650 3.200605 TGCATAGGATTGAGAAAGCAGGA 59.799 43.478 0.00 0.00 0.00 3.86
5636 6652 4.820173 TGATGCATAGGATTGAGAAAGCAG 59.180 41.667 0.00 0.00 33.94 4.24
5637 6653 4.784177 TGATGCATAGGATTGAGAAAGCA 58.216 39.130 0.00 0.00 35.03 3.91
5638 6654 5.390673 CGATGATGCATAGGATTGAGAAAGC 60.391 44.000 0.00 0.00 0.00 3.51
5639 6655 5.699915 ACGATGATGCATAGGATTGAGAAAG 59.300 40.000 0.00 0.00 0.00 2.62
5643 6659 5.105595 TCCTACGATGATGCATAGGATTGAG 60.106 44.000 9.18 0.00 38.61 3.02
5647 6663 5.423290 TCATTCCTACGATGATGCATAGGAT 59.577 40.000 13.20 0.29 42.16 3.24
5686 6713 7.807680 AGTTCGTACAAATTTCAAAGGATCTC 58.192 34.615 0.00 0.00 0.00 2.75
5733 6760 5.780282 TGGAGAGAACTGGAACTGAATCTTA 59.220 40.000 0.00 0.00 30.80 2.10
5743 6770 4.286808 TGAATCATGTGGAGAGAACTGGAA 59.713 41.667 0.00 0.00 0.00 3.53
5746 6773 4.630505 CACTGAATCATGTGGAGAGAACTG 59.369 45.833 0.00 0.00 0.00 3.16
5747 6774 4.529769 TCACTGAATCATGTGGAGAGAACT 59.470 41.667 11.07 0.00 35.15 3.01
5819 6846 4.780815 TCAGAAATTGTACATGGGCCTAG 58.219 43.478 4.53 0.00 0.00 3.02
5822 6849 4.799564 TTTCAGAAATTGTACATGGGCC 57.200 40.909 0.00 0.00 0.00 5.80
5823 6850 6.127647 TGAGATTTCAGAAATTGTACATGGGC 60.128 38.462 9.84 0.00 0.00 5.36
5832 6859 6.093082 GGGCCAATTTGAGATTTCAGAAATTG 59.907 38.462 9.84 12.97 39.27 2.32
5835 6862 4.321899 CGGGCCAATTTGAGATTTCAGAAA 60.322 41.667 4.39 0.00 34.15 2.52
5857 6884 5.101628 CCACCAATCACCATTTTATTCACG 58.898 41.667 0.00 0.00 0.00 4.35
5858 6885 4.869861 GCCACCAATCACCATTTTATTCAC 59.130 41.667 0.00 0.00 0.00 3.18
5870 6897 5.392057 GCTAAACTTTAGAGCCACCAATCAC 60.392 44.000 12.05 0.00 0.00 3.06
5871 6898 4.700213 GCTAAACTTTAGAGCCACCAATCA 59.300 41.667 12.05 0.00 0.00 2.57
5872 6899 4.201822 CGCTAAACTTTAGAGCCACCAATC 60.202 45.833 12.05 0.00 32.35 2.67
5873 6900 3.689649 CGCTAAACTTTAGAGCCACCAAT 59.310 43.478 12.05 0.00 32.35 3.16
5874 6901 3.071479 CGCTAAACTTTAGAGCCACCAA 58.929 45.455 12.05 0.00 32.35 3.67
5875 6902 2.038033 ACGCTAAACTTTAGAGCCACCA 59.962 45.455 12.05 0.00 32.35 4.17
5876 6903 2.671888 GACGCTAAACTTTAGAGCCACC 59.328 50.000 12.05 0.00 32.35 4.61
5877 6904 3.123116 GTGACGCTAAACTTTAGAGCCAC 59.877 47.826 13.24 13.24 32.35 5.01
5878 6905 3.006537 AGTGACGCTAAACTTTAGAGCCA 59.993 43.478 12.05 5.17 32.35 4.75
5879 6906 3.586892 AGTGACGCTAAACTTTAGAGCC 58.413 45.455 12.05 2.70 32.35 4.70
5880 6907 4.201504 CGAAGTGACGCTAAACTTTAGAGC 60.202 45.833 12.05 6.34 36.77 4.09
5881 6908 5.152097 TCGAAGTGACGCTAAACTTTAGAG 58.848 41.667 12.05 10.93 36.77 2.43
5882 6909 5.112220 TCGAAGTGACGCTAAACTTTAGA 57.888 39.130 12.05 0.00 36.77 2.10
5883 6910 5.817616 TTCGAAGTGACGCTAAACTTTAG 57.182 39.130 0.00 4.39 36.77 1.85
5884 6911 5.750067 ACTTTCGAAGTGACGCTAAACTTTA 59.250 36.000 0.00 0.00 41.01 1.85
5885 6912 4.569564 ACTTTCGAAGTGACGCTAAACTTT 59.430 37.500 0.00 0.00 41.01 2.66
5886 6913 4.117685 ACTTTCGAAGTGACGCTAAACTT 58.882 39.130 0.00 0.00 41.01 2.66
5887 6914 3.714391 ACTTTCGAAGTGACGCTAAACT 58.286 40.909 0.00 0.00 41.01 2.66
5888 6915 4.026310 TCAACTTTCGAAGTGACGCTAAAC 60.026 41.667 0.00 0.00 41.91 2.01
5889 6916 4.114073 TCAACTTTCGAAGTGACGCTAAA 58.886 39.130 0.00 0.00 41.91 1.85
5890 6917 3.708890 TCAACTTTCGAAGTGACGCTAA 58.291 40.909 0.00 0.00 41.91 3.09
5891 6918 3.305964 CTCAACTTTCGAAGTGACGCTA 58.694 45.455 0.00 0.00 41.91 4.26
5892 6919 2.128035 CTCAACTTTCGAAGTGACGCT 58.872 47.619 0.00 0.00 41.91 5.07
5893 6920 1.192534 CCTCAACTTTCGAAGTGACGC 59.807 52.381 0.00 0.00 41.91 5.19
5894 6921 2.726760 CTCCTCAACTTTCGAAGTGACG 59.273 50.000 0.00 0.00 41.91 4.35
5895 6922 3.060602 CCTCCTCAACTTTCGAAGTGAC 58.939 50.000 0.00 0.00 41.91 3.67
5896 6923 2.698797 ACCTCCTCAACTTTCGAAGTGA 59.301 45.455 0.00 3.19 41.91 3.41
5897 6924 2.802816 CACCTCCTCAACTTTCGAAGTG 59.197 50.000 0.00 0.00 41.91 3.16
5898 6925 2.434702 ACACCTCCTCAACTTTCGAAGT 59.565 45.455 0.00 0.00 45.46 3.01
5899 6926 2.802816 CACACCTCCTCAACTTTCGAAG 59.197 50.000 0.00 0.00 0.00 3.79
5900 6927 2.432874 TCACACCTCCTCAACTTTCGAA 59.567 45.455 0.00 0.00 0.00 3.71
5901 6928 2.035961 CTCACACCTCCTCAACTTTCGA 59.964 50.000 0.00 0.00 0.00 3.71
5902 6929 2.035961 TCTCACACCTCCTCAACTTTCG 59.964 50.000 0.00 0.00 0.00 3.46
5903 6930 3.753294 TCTCACACCTCCTCAACTTTC 57.247 47.619 0.00 0.00 0.00 2.62
5904 6931 3.906846 AGATCTCACACCTCCTCAACTTT 59.093 43.478 0.00 0.00 0.00 2.66
5905 6932 3.513515 GAGATCTCACACCTCCTCAACTT 59.486 47.826 18.11 0.00 0.00 2.66
5906 6933 3.096092 GAGATCTCACACCTCCTCAACT 58.904 50.000 18.11 0.00 0.00 3.16
5907 6934 3.096092 AGAGATCTCACACCTCCTCAAC 58.904 50.000 24.39 0.00 0.00 3.18
5908 6935 3.464720 AGAGATCTCACACCTCCTCAA 57.535 47.619 24.39 0.00 0.00 3.02
5909 6936 3.464720 AAGAGATCTCACACCTCCTCA 57.535 47.619 24.39 0.00 0.00 3.86
5910 6937 6.065374 TGTATAAGAGATCTCACACCTCCTC 58.935 44.000 24.39 6.43 0.00 3.71
5911 6938 6.019656 TGTATAAGAGATCTCACACCTCCT 57.980 41.667 24.39 0.00 0.00 3.69
5912 6939 5.830991 ACTGTATAAGAGATCTCACACCTCC 59.169 44.000 24.39 6.68 0.00 4.30
5913 6940 6.238897 CCACTGTATAAGAGATCTCACACCTC 60.239 46.154 24.39 10.37 0.00 3.85
5914 6941 5.596361 CCACTGTATAAGAGATCTCACACCT 59.404 44.000 24.39 0.16 0.00 4.00
5915 6942 5.221342 CCCACTGTATAAGAGATCTCACACC 60.221 48.000 24.39 8.66 0.00 4.16
5916 6943 5.361285 ACCCACTGTATAAGAGATCTCACAC 59.639 44.000 24.39 15.17 0.00 3.82
5917 6944 5.519808 ACCCACTGTATAAGAGATCTCACA 58.480 41.667 24.39 17.42 0.00 3.58
5918 6945 6.322712 AGAACCCACTGTATAAGAGATCTCAC 59.677 42.308 24.39 13.84 0.00 3.51
5919 6946 6.436027 AGAACCCACTGTATAAGAGATCTCA 58.564 40.000 24.39 5.31 0.00 3.27
5920 6947 6.015772 GGAGAACCCACTGTATAAGAGATCTC 60.016 46.154 15.29 15.29 34.14 2.75
5921 6948 5.836358 GGAGAACCCACTGTATAAGAGATCT 59.164 44.000 0.00 0.00 34.14 2.75
5922 6949 6.091718 GGAGAACCCACTGTATAAGAGATC 57.908 45.833 0.00 0.00 34.14 2.75
5938 6965 1.078426 CGTGGTGATGGGGAGAACC 60.078 63.158 0.00 0.00 39.11 3.62
5939 6966 0.673644 CACGTGGTGATGGGGAGAAC 60.674 60.000 7.95 0.00 35.23 3.01
5940 6967 0.834261 TCACGTGGTGATGGGGAGAA 60.834 55.000 17.00 0.00 37.67 2.87
5941 6968 1.229051 TCACGTGGTGATGGGGAGA 60.229 57.895 17.00 0.00 37.67 3.71
5942 6969 1.079127 GTCACGTGGTGATGGGGAG 60.079 63.158 17.00 0.00 44.63 4.30
5943 6970 1.198094 ATGTCACGTGGTGATGGGGA 61.198 55.000 17.00 0.00 44.63 4.81
5944 6971 0.744414 GATGTCACGTGGTGATGGGG 60.744 60.000 17.00 0.00 44.63 4.96
5945 6972 0.250234 AGATGTCACGTGGTGATGGG 59.750 55.000 17.00 0.00 44.63 4.00
5946 6973 1.338105 ACAGATGTCACGTGGTGATGG 60.338 52.381 17.00 4.72 44.63 3.51
5947 6974 1.728425 CACAGATGTCACGTGGTGATG 59.272 52.381 17.00 10.91 44.63 3.07
5948 6975 1.338105 CCACAGATGTCACGTGGTGAT 60.338 52.381 17.00 5.13 44.63 3.06
5949 6976 0.033366 CCACAGATGTCACGTGGTGA 59.967 55.000 17.00 0.00 44.27 4.02
5950 6977 2.532186 CCACAGATGTCACGTGGTG 58.468 57.895 17.00 13.94 44.27 4.17
5953 6980 1.195448 GCTTTCCACAGATGTCACGTG 59.805 52.381 9.94 9.94 0.00 4.49
5954 6981 1.202639 TGCTTTCCACAGATGTCACGT 60.203 47.619 0.00 0.00 0.00 4.49
5955 6982 1.511850 TGCTTTCCACAGATGTCACG 58.488 50.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.