Multiple sequence alignment - TraesCS6D01G076400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G076400 chr6D 100.000 2888 0 0 1 2888 41206038 41208925 0.000000e+00 5334.0
1 TraesCS6D01G076400 chr6D 94.591 758 28 6 1 753 22135600 22134851 0.000000e+00 1160.0
2 TraesCS6D01G076400 chr6D 92.256 749 26 10 1 744 418628369 418629090 0.000000e+00 1033.0
3 TraesCS6D01G076400 chr6D 78.295 387 69 14 1231 1611 464984762 464985139 4.810000e-58 235.0
4 TraesCS6D01G076400 chr6D 77.778 369 73 8 1252 1617 465011249 465010887 4.850000e-53 219.0
5 TraesCS6D01G076400 chr6B 93.944 1354 40 19 748 2070 96655539 96654197 0.000000e+00 2008.0
6 TraesCS6D01G076400 chr6B 89.740 731 61 11 2111 2838 648065010 648064291 0.000000e+00 922.0
7 TraesCS6D01G076400 chr6B 89.821 727 59 13 2109 2832 237825533 237826247 0.000000e+00 918.0
8 TraesCS6D01G076400 chr6B 88.469 529 48 11 2312 2838 483378255 483377738 6.790000e-176 627.0
9 TraesCS6D01G076400 chr6B 91.411 326 26 2 2514 2838 687057457 687057781 2.040000e-121 446.0
10 TraesCS6D01G076400 chr6B 97.561 41 0 1 2849 2888 96654115 96654075 5.160000e-08 69.4
11 TraesCS6D01G076400 chr6A 94.878 1269 39 11 765 2023 51760464 51761716 0.000000e+00 1960.0
12 TraesCS6D01G076400 chr6A 92.886 731 37 7 1 727 67028650 67029369 0.000000e+00 1048.0
13 TraesCS6D01G076400 chr6A 78.877 374 66 12 1243 1611 611513586 611513951 1.030000e-59 241.0
14 TraesCS6D01G076400 chr6A 100.000 37 0 0 2852 2888 51761837 51761873 5.160000e-08 69.4
15 TraesCS6D01G076400 chr6A 97.368 38 1 0 2072 2109 51761796 51761833 6.680000e-07 65.8
16 TraesCS6D01G076400 chr1D 94.667 750 32 5 1 745 62226766 62227512 0.000000e+00 1157.0
17 TraesCS6D01G076400 chr1D 93.307 747 34 6 1 742 62223917 62224652 0.000000e+00 1088.0
18 TraesCS6D01G076400 chr1D 92.468 770 30 5 1 744 62233802 62234569 0.000000e+00 1075.0
19 TraesCS6D01G076400 chr3D 94.681 752 18 11 1 747 586941147 586940413 0.000000e+00 1147.0
20 TraesCS6D01G076400 chr5D 93.850 748 30 6 1 744 535497905 535498640 0.000000e+00 1112.0
21 TraesCS6D01G076400 chr5D 92.510 761 26 9 1 754 480810821 480811557 0.000000e+00 1061.0
22 TraesCS6D01G076400 chr5D 93.837 649 22 3 1 647 479616359 479615727 0.000000e+00 961.0
23 TraesCS6D01G076400 chr5D 86.763 763 99 2 1063 1824 556273504 556272743 0.000000e+00 848.0
24 TraesCS6D01G076400 chr5D 86.745 762 99 2 1065 1825 561572999 561572239 0.000000e+00 846.0
25 TraesCS6D01G076400 chr5D 78.706 371 66 12 1252 1617 287571456 287571094 4.810000e-58 235.0
26 TraesCS6D01G076400 chr5A 92.686 752 47 7 1 747 159435256 159436004 0.000000e+00 1077.0
27 TraesCS6D01G076400 chr5A 88.645 775 88 0 1063 1837 689251931 689252705 0.000000e+00 944.0
28 TraesCS6D01G076400 chr7B 91.848 736 52 4 2109 2837 44761882 44761148 0.000000e+00 1020.0
29 TraesCS6D01G076400 chr7B 86.282 831 97 14 1007 1825 1437023 1437848 0.000000e+00 887.0
30 TraesCS6D01G076400 chr7B 92.366 393 25 3 2109 2497 190064365 190064756 3.250000e-154 555.0
31 TraesCS6D01G076400 chr7B 91.850 319 24 2 2514 2832 190064806 190065122 7.340000e-121 444.0
32 TraesCS6D01G076400 chr4D 88.023 860 93 9 983 1837 504597385 504598239 0.000000e+00 1009.0
33 TraesCS6D01G076400 chr4B 89.783 783 75 4 1063 1844 651514489 651515267 0.000000e+00 998.0
34 TraesCS6D01G076400 chr3B 89.807 726 59 10 2111 2833 227830351 227831064 0.000000e+00 917.0
35 TraesCS6D01G076400 chr3B 93.112 392 25 1 2109 2498 74979191 74978800 8.980000e-160 573.0
36 TraesCS6D01G076400 chr3B 91.411 326 26 2 2514 2838 74978730 74978406 2.040000e-121 446.0
37 TraesCS6D01G076400 chr2B 88.518 749 56 14 2109 2838 728800384 728801121 0.000000e+00 880.0
38 TraesCS6D01G076400 chr2B 95.178 394 15 2 2109 2498 745943071 745943464 1.140000e-173 619.0
39 TraesCS6D01G076400 chr2B 91.692 325 24 3 2514 2838 745943511 745943832 5.680000e-122 448.0
40 TraesCS6D01G076400 chr2D 92.881 604 30 6 140 740 595122187 595121594 0.000000e+00 865.0
41 TraesCS6D01G076400 chr4A 85.542 830 105 10 1007 1825 603666144 603666969 0.000000e+00 854.0
42 TraesCS6D01G076400 chr7D 93.112 392 24 2 2110 2498 16481749 16481358 3.230000e-159 571.0
43 TraesCS6D01G076400 chr2A 92.112 393 28 2 2109 2498 759811090 759810698 4.210000e-153 551.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G076400 chr6D 41206038 41208925 2887 False 5334.0 5334 100.000000 1 2888 1 chr6D.!!$F1 2887
1 TraesCS6D01G076400 chr6D 22134851 22135600 749 True 1160.0 1160 94.591000 1 753 1 chr6D.!!$R1 752
2 TraesCS6D01G076400 chr6D 418628369 418629090 721 False 1033.0 1033 92.256000 1 744 1 chr6D.!!$F2 743
3 TraesCS6D01G076400 chr6B 96654075 96655539 1464 True 1038.7 2008 95.752500 748 2888 2 chr6B.!!$R3 2140
4 TraesCS6D01G076400 chr6B 648064291 648065010 719 True 922.0 922 89.740000 2111 2838 1 chr6B.!!$R2 727
5 TraesCS6D01G076400 chr6B 237825533 237826247 714 False 918.0 918 89.821000 2109 2832 1 chr6B.!!$F1 723
6 TraesCS6D01G076400 chr6B 483377738 483378255 517 True 627.0 627 88.469000 2312 2838 1 chr6B.!!$R1 526
7 TraesCS6D01G076400 chr6A 67028650 67029369 719 False 1048.0 1048 92.886000 1 727 1 chr6A.!!$F1 726
8 TraesCS6D01G076400 chr6A 51760464 51761873 1409 False 698.4 1960 97.415333 765 2888 3 chr6A.!!$F3 2123
9 TraesCS6D01G076400 chr1D 62223917 62227512 3595 False 1122.5 1157 93.987000 1 745 2 chr1D.!!$F2 744
10 TraesCS6D01G076400 chr1D 62233802 62234569 767 False 1075.0 1075 92.468000 1 744 1 chr1D.!!$F1 743
11 TraesCS6D01G076400 chr3D 586940413 586941147 734 True 1147.0 1147 94.681000 1 747 1 chr3D.!!$R1 746
12 TraesCS6D01G076400 chr5D 535497905 535498640 735 False 1112.0 1112 93.850000 1 744 1 chr5D.!!$F2 743
13 TraesCS6D01G076400 chr5D 480810821 480811557 736 False 1061.0 1061 92.510000 1 754 1 chr5D.!!$F1 753
14 TraesCS6D01G076400 chr5D 479615727 479616359 632 True 961.0 961 93.837000 1 647 1 chr5D.!!$R2 646
15 TraesCS6D01G076400 chr5D 556272743 556273504 761 True 848.0 848 86.763000 1063 1824 1 chr5D.!!$R3 761
16 TraesCS6D01G076400 chr5D 561572239 561572999 760 True 846.0 846 86.745000 1065 1825 1 chr5D.!!$R4 760
17 TraesCS6D01G076400 chr5A 159435256 159436004 748 False 1077.0 1077 92.686000 1 747 1 chr5A.!!$F1 746
18 TraesCS6D01G076400 chr5A 689251931 689252705 774 False 944.0 944 88.645000 1063 1837 1 chr5A.!!$F2 774
19 TraesCS6D01G076400 chr7B 44761148 44761882 734 True 1020.0 1020 91.848000 2109 2837 1 chr7B.!!$R1 728
20 TraesCS6D01G076400 chr7B 1437023 1437848 825 False 887.0 887 86.282000 1007 1825 1 chr7B.!!$F1 818
21 TraesCS6D01G076400 chr7B 190064365 190065122 757 False 499.5 555 92.108000 2109 2832 2 chr7B.!!$F2 723
22 TraesCS6D01G076400 chr4D 504597385 504598239 854 False 1009.0 1009 88.023000 983 1837 1 chr4D.!!$F1 854
23 TraesCS6D01G076400 chr4B 651514489 651515267 778 False 998.0 998 89.783000 1063 1844 1 chr4B.!!$F1 781
24 TraesCS6D01G076400 chr3B 227830351 227831064 713 False 917.0 917 89.807000 2111 2833 1 chr3B.!!$F1 722
25 TraesCS6D01G076400 chr3B 74978406 74979191 785 True 509.5 573 92.261500 2109 2838 2 chr3B.!!$R1 729
26 TraesCS6D01G076400 chr2B 728800384 728801121 737 False 880.0 880 88.518000 2109 2838 1 chr2B.!!$F1 729
27 TraesCS6D01G076400 chr2B 745943071 745943832 761 False 533.5 619 93.435000 2109 2838 2 chr2B.!!$F2 729
28 TraesCS6D01G076400 chr2D 595121594 595122187 593 True 865.0 865 92.881000 140 740 1 chr2D.!!$R1 600
29 TraesCS6D01G076400 chr4A 603666144 603666969 825 False 854.0 854 85.542000 1007 1825 1 chr4A.!!$F1 818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 3852 0.035152 TGGCAGCAGGTTATGGACAG 60.035 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2843 5943 0.036952 CTCGTGACATGGAGTTGGCT 60.037 55.0 0.0 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 4.424711 ATCGCCCACATGCCCGTT 62.425 61.111 0.00 0.00 0.00 4.44
110 112 3.445096 ACCAAAAGCTATCAGTTGCCATC 59.555 43.478 0.00 0.00 0.00 3.51
379 385 1.202867 TGAGCAACCATGGCAACTGTA 60.203 47.619 13.04 0.00 37.61 2.74
380 386 1.470098 GAGCAACCATGGCAACTGTAG 59.530 52.381 13.04 0.00 37.61 2.74
381 387 1.202927 AGCAACCATGGCAACTGTAGT 60.203 47.619 13.04 0.00 37.61 2.73
382 388 1.613437 GCAACCATGGCAACTGTAGTT 59.387 47.619 13.04 0.00 39.12 2.24
394 400 2.413837 ACTGTAGTTGTCCGACATTGC 58.586 47.619 1.09 0.00 0.00 3.56
395 401 2.224185 ACTGTAGTTGTCCGACATTGCA 60.224 45.455 1.09 3.51 0.00 4.08
396 402 2.805671 CTGTAGTTGTCCGACATTGCAA 59.194 45.455 0.00 0.00 0.00 4.08
397 403 2.546368 TGTAGTTGTCCGACATTGCAAC 59.454 45.455 0.00 0.00 40.83 4.17
398 404 1.967319 AGTTGTCCGACATTGCAACT 58.033 45.000 0.00 0.00 44.36 3.16
399 405 1.603802 AGTTGTCCGACATTGCAACTG 59.396 47.619 0.00 4.25 46.43 3.16
400 406 1.333619 GTTGTCCGACATTGCAACTGT 59.666 47.619 0.00 7.78 38.41 3.55
594 3528 4.570663 GTGCTCGCTCGCCCGTAT 62.571 66.667 0.00 0.00 0.00 3.06
852 3789 4.483950 AGATAGCTTACCACATCTGCCTA 58.516 43.478 0.00 0.00 0.00 3.93
907 3852 0.035152 TGGCAGCAGGTTATGGACAG 60.035 55.000 0.00 0.00 0.00 3.51
910 3855 1.740025 GCAGCAGGTTATGGACAGAAC 59.260 52.381 1.40 1.40 0.00 3.01
915 3860 3.437049 GCAGGTTATGGACAGAACACTTC 59.563 47.826 11.37 0.00 34.44 3.01
926 3871 3.809832 ACAGAACACTTCACCGATTCTTG 59.190 43.478 0.00 0.00 0.00 3.02
930 3875 5.409826 AGAACACTTCACCGATTCTTGATTC 59.590 40.000 0.00 0.00 0.00 2.52
1089 4051 4.828296 TACCTCGACCCTCCGGCC 62.828 72.222 0.00 0.00 0.00 6.13
1147 4109 1.068083 CTGTACCGCGCCATCATCT 59.932 57.895 0.00 0.00 0.00 2.90
1889 4851 1.741770 GACGCCTCGGCTGTTGATT 60.742 57.895 6.35 0.00 39.32 2.57
1891 4853 2.753966 CGCCTCGGCTGTTGATTGG 61.754 63.158 6.35 0.00 39.32 3.16
1892 4854 1.377202 GCCTCGGCTGTTGATTGGA 60.377 57.895 0.00 0.00 38.26 3.53
1893 4855 1.372087 GCCTCGGCTGTTGATTGGAG 61.372 60.000 0.00 0.00 38.26 3.86
1906 4871 2.538790 TTGGAGCCACACCAAGAGA 58.461 52.632 0.00 0.00 41.64 3.10
2070 5047 6.573094 GCTCTATGAACAAGGAAAGCCAAATT 60.573 38.462 0.00 0.00 36.29 1.82
2079 5106 6.496911 ACAAGGAAAGCCAAATTAATGTAGGT 59.503 34.615 0.00 0.00 36.29 3.08
2216 5243 5.615289 AGCTGAGTATGAACACTTTCTGTT 58.385 37.500 0.00 0.00 46.44 3.16
2254 5281 4.739228 CGAGCTGATCTTGAGTCAATACTG 59.261 45.833 5.91 6.37 35.56 2.74
2255 5282 5.449725 CGAGCTGATCTTGAGTCAATACTGA 60.450 44.000 5.91 0.26 35.56 3.41
2282 5309 2.100749 TCGATTTTAGCTCGATGGCTCA 59.899 45.455 1.96 0.00 42.97 4.26
2464 5497 3.687212 TCGGCCATGTGTTAAATAGTGTG 59.313 43.478 2.24 0.00 0.00 3.82
2482 5515 2.223688 TGTGTTGTTTTTGGCATCTCCG 60.224 45.455 0.00 0.00 37.80 4.63
2498 5531 2.815211 CGGCATGCACTACGCTGT 60.815 61.111 21.36 0.00 43.06 4.40
2500 5533 0.875908 CGGCATGCACTACGCTGTAT 60.876 55.000 21.36 0.00 43.06 2.29
2501 5534 1.601914 CGGCATGCACTACGCTGTATA 60.602 52.381 21.36 0.00 43.06 1.47
2503 5536 3.672241 CGGCATGCACTACGCTGTATATA 60.672 47.826 21.36 0.00 43.06 0.86
2509 5542 8.269424 GCATGCACTACGCTGTATATATTTATC 58.731 37.037 14.21 0.00 43.06 1.75
2510 5543 8.755941 CATGCACTACGCTGTATATATTTATCC 58.244 37.037 0.00 0.00 43.06 2.59
2511 5544 7.262772 TGCACTACGCTGTATATATTTATCCC 58.737 38.462 0.00 0.00 43.06 3.85
2721 5821 2.605837 ACTAGCTCGAGATCGACTCA 57.394 50.000 18.75 0.00 45.14 3.41
2723 5823 3.472652 ACTAGCTCGAGATCGACTCAAT 58.527 45.455 18.75 0.00 45.14 2.57
2799 5899 6.583806 CACTTAATTTGAGCTTGCTCGAATTT 59.416 34.615 35.73 24.25 41.93 1.82
2820 5920 7.870509 ATTTTAATATGAGTTGAGCTGAGCA 57.129 32.000 7.39 0.00 0.00 4.26
2826 5926 1.458827 GAGTTGAGCTGAGCAAAGTCG 59.541 52.381 7.39 0.00 0.00 4.18
2842 5942 2.792374 TCGAACTCGACTCGTTTGC 58.208 52.632 10.93 0.00 44.22 3.68
2843 5943 0.029700 TCGAACTCGACTCGTTTGCA 59.970 50.000 10.93 0.00 44.22 4.08
2844 5944 0.431233 CGAACTCGACTCGTTTGCAG 59.569 55.000 0.00 0.00 43.02 4.41
2845 5945 0.161870 GAACTCGACTCGTTTGCAGC 59.838 55.000 0.00 0.00 0.00 5.25
2846 5946 1.222115 AACTCGACTCGTTTGCAGCC 61.222 55.000 0.00 0.00 0.00 4.85
2847 5947 1.664649 CTCGACTCGTTTGCAGCCA 60.665 57.895 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.930950 CTTTTGGTGTGTGGGAGAGAA 58.069 47.619 0.00 0.00 0.00 2.87
110 112 3.056678 TGCCATGTATCCTGCAAAAACAG 60.057 43.478 0.00 0.00 37.42 3.16
224 229 2.546899 TGCCACCTACTAACACTGGAT 58.453 47.619 0.00 0.00 0.00 3.41
379 385 1.967319 AGTTGCAATGTCGGACAACT 58.033 45.000 15.72 10.55 45.86 3.16
380 386 1.333619 ACAGTTGCAATGTCGGACAAC 59.666 47.619 15.72 8.30 42.08 3.32
381 387 1.674359 ACAGTTGCAATGTCGGACAA 58.326 45.000 15.72 0.00 0.00 3.18
382 388 2.224185 ACTACAGTTGCAATGTCGGACA 60.224 45.455 14.01 14.01 32.02 4.02
383 389 2.413837 ACTACAGTTGCAATGTCGGAC 58.586 47.619 14.94 0.00 32.02 4.79
384 390 2.831685 ACTACAGTTGCAATGTCGGA 57.168 45.000 14.94 1.97 32.02 4.55
395 401 2.870435 GCCATGTCGGACAACTACAGTT 60.870 50.000 15.72 0.00 36.12 3.16
396 402 1.337823 GCCATGTCGGACAACTACAGT 60.338 52.381 15.72 0.00 36.56 3.55
397 403 1.337728 TGCCATGTCGGACAACTACAG 60.338 52.381 15.72 1.98 36.56 2.74
398 404 0.682292 TGCCATGTCGGACAACTACA 59.318 50.000 15.72 8.46 36.56 2.74
399 405 1.463444 GTTGCCATGTCGGACAACTAC 59.537 52.381 15.72 10.65 43.12 2.73
400 406 1.803334 GTTGCCATGTCGGACAACTA 58.197 50.000 15.72 2.39 43.12 2.24
727 3664 2.005971 AAAGACGTCGATAACTGCCC 57.994 50.000 10.46 0.00 0.00 5.36
759 3696 3.502979 GCACCATTTACTAACCACGGAAA 59.497 43.478 0.00 0.00 0.00 3.13
826 3763 5.118990 GCAGATGTGGTAAGCTATCTTCAA 58.881 41.667 0.00 0.00 33.85 2.69
827 3764 4.443457 GGCAGATGTGGTAAGCTATCTTCA 60.443 45.833 0.00 0.00 33.85 3.02
828 3765 4.061596 GGCAGATGTGGTAAGCTATCTTC 58.938 47.826 0.00 0.00 33.85 2.87
829 3766 3.713764 AGGCAGATGTGGTAAGCTATCTT 59.286 43.478 0.00 0.00 36.35 2.40
890 3835 1.740025 GTTCTGTCCATAACCTGCTGC 59.260 52.381 0.00 0.00 0.00 5.25
907 3852 5.409826 AGAATCAAGAATCGGTGAAGTGTTC 59.590 40.000 0.00 0.00 0.00 3.18
910 3855 5.869753 AAGAATCAAGAATCGGTGAAGTG 57.130 39.130 0.00 0.00 0.00 3.16
915 3860 5.220931 GGATGGAAAGAATCAAGAATCGGTG 60.221 44.000 0.00 0.00 0.00 4.94
926 3871 5.792741 AGAGATCGATGGATGGAAAGAATC 58.207 41.667 0.54 0.00 31.51 2.52
930 3875 5.212532 AGAAGAGATCGATGGATGGAAAG 57.787 43.478 0.54 0.00 31.51 2.62
1147 4109 2.915659 ACTGGCGGTGAACTCGGA 60.916 61.111 0.00 0.00 0.00 4.55
1384 4346 2.403987 CGCCGACGTGTAGAGGAG 59.596 66.667 0.00 0.00 33.53 3.69
1495 4457 3.072468 CTTGGAGTACCCCGGCGA 61.072 66.667 9.30 0.00 34.81 5.54
1889 4851 0.325933 CATCTCTTGGTGTGGCTCCA 59.674 55.000 0.00 0.00 0.00 3.86
1891 4853 2.286872 CATCATCTCTTGGTGTGGCTC 58.713 52.381 0.00 0.00 31.34 4.70
1892 4854 1.064906 CCATCATCTCTTGGTGTGGCT 60.065 52.381 0.00 0.00 34.38 4.75
1893 4855 1.340405 ACCATCATCTCTTGGTGTGGC 60.340 52.381 0.00 0.00 44.49 5.01
1906 4871 6.270463 AGCTCTCTCAGATTGATTACCATCAT 59.730 38.462 0.00 0.00 39.28 2.45
1935 4900 3.323979 ACTGGTGTCGTTTCTTACATCCT 59.676 43.478 0.00 0.00 0.00 3.24
1936 4901 3.660865 ACTGGTGTCGTTTCTTACATCC 58.339 45.455 0.00 0.00 0.00 3.51
2017 4993 6.032094 GCGTAGTTACTGCTTGTTCATAGTA 58.968 40.000 0.00 0.00 0.00 1.82
2070 5047 9.625747 TCTGAATTTGCATGAATACCTACATTA 57.374 29.630 0.00 0.00 0.00 1.90
2079 5106 7.229306 GGAGTACCATCTGAATTTGCATGAATA 59.771 37.037 0.00 0.00 35.97 1.75
2216 5243 1.502231 GCTCGTTTCTCAACTGAGCA 58.498 50.000 18.50 0.00 46.93 4.26
2254 5281 1.776333 CGAGCTAAAATCGAGCGAGTC 59.224 52.381 0.00 0.00 44.98 3.36
2255 5282 1.400846 TCGAGCTAAAATCGAGCGAGT 59.599 47.619 0.00 0.00 43.79 4.18
2351 5382 1.095600 GGAGAAAAATCCTGGGCGAC 58.904 55.000 0.00 0.00 36.35 5.19
2464 5497 1.934849 GCCGGAGATGCCAAAAACAAC 60.935 52.381 5.05 0.00 35.94 3.32
2503 5536 9.799106 AGAGAACGATTTATGATTGGGATAAAT 57.201 29.630 0.00 0.00 38.25 1.40
2509 5542 8.383318 ACATAAGAGAACGATTTATGATTGGG 57.617 34.615 9.65 0.00 37.90 4.12
2510 5543 8.217115 CGACATAAGAGAACGATTTATGATTGG 58.783 37.037 9.65 0.00 37.90 3.16
2511 5544 8.968242 TCGACATAAGAGAACGATTTATGATTG 58.032 33.333 9.65 1.41 37.90 2.67
2682 5782 6.644592 GCTAGTTTCGAGCTAAATGAGATGAT 59.355 38.462 0.00 0.00 36.96 2.45
2721 5821 3.551890 CGTGCTCAGCTTGTAACGATATT 59.448 43.478 0.00 0.00 33.03 1.28
2723 5823 2.162809 TCGTGCTCAGCTTGTAACGATA 59.837 45.455 5.13 0.00 35.35 2.92
2799 5899 6.881065 ACTTTGCTCAGCTCAACTCATATTAA 59.119 34.615 0.00 0.00 0.00 1.40
2826 5926 0.161870 GCTGCAAACGAGTCGAGTTC 59.838 55.000 21.50 6.13 0.00 3.01
2833 5933 1.166531 GGAGTTGGCTGCAAACGAGT 61.167 55.000 13.89 0.00 32.93 4.18
2834 5934 1.165907 TGGAGTTGGCTGCAAACGAG 61.166 55.000 13.89 0.00 40.15 4.18
2835 5935 0.537143 ATGGAGTTGGCTGCAAACGA 60.537 50.000 13.89 3.36 45.96 3.85
2836 5936 0.387622 CATGGAGTTGGCTGCAAACG 60.388 55.000 13.89 0.00 45.96 3.60
2837 5937 0.675633 ACATGGAGTTGGCTGCAAAC 59.324 50.000 11.99 11.99 45.96 2.93
2838 5938 0.961019 GACATGGAGTTGGCTGCAAA 59.039 50.000 0.50 0.00 45.96 3.68
2839 5939 0.178995 TGACATGGAGTTGGCTGCAA 60.179 50.000 0.50 0.00 45.96 4.08
2840 5940 0.890542 GTGACATGGAGTTGGCTGCA 60.891 55.000 0.50 0.00 46.85 4.41
2841 5941 1.878775 GTGACATGGAGTTGGCTGC 59.121 57.895 0.00 0.00 0.00 5.25
2842 5942 0.320683 TCGTGACATGGAGTTGGCTG 60.321 55.000 0.00 0.00 0.00 4.85
2843 5943 0.036952 CTCGTGACATGGAGTTGGCT 60.037 55.000 0.00 0.00 0.00 4.75
2844 5944 1.021390 CCTCGTGACATGGAGTTGGC 61.021 60.000 0.00 0.00 0.00 4.52
2845 5945 0.608130 TCCTCGTGACATGGAGTTGG 59.392 55.000 0.00 0.00 0.00 3.77
2846 5946 2.094026 TGATCCTCGTGACATGGAGTTG 60.094 50.000 0.00 0.00 32.95 3.16
2847 5947 2.179427 TGATCCTCGTGACATGGAGTT 58.821 47.619 0.00 0.00 32.95 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.