Multiple sequence alignment - TraesCS6D01G075500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G075500 | chr6D | 100.000 | 3017 | 0 | 0 | 1 | 3017 | 39064771 | 39061755 | 0.000000e+00 | 5572.0 |
1 | TraesCS6D01G075500 | chr6D | 86.014 | 143 | 18 | 2 | 2874 | 3016 | 20265649 | 20265789 | 5.210000e-33 | 152.0 |
2 | TraesCS6D01G075500 | chr7A | 97.798 | 1998 | 43 | 1 | 663 | 2660 | 542716729 | 542718725 | 0.000000e+00 | 3445.0 |
3 | TraesCS6D01G075500 | chr7A | 89.843 | 827 | 58 | 21 | 1837 | 2659 | 660575337 | 660576141 | 0.000000e+00 | 1038.0 |
4 | TraesCS6D01G075500 | chr7A | 100.000 | 29 | 0 | 0 | 2173 | 2201 | 660575609 | 660575637 | 2.000000e-03 | 54.7 |
5 | TraesCS6D01G075500 | chr3A | 97.797 | 1997 | 44 | 0 | 663 | 2659 | 144699844 | 144701840 | 0.000000e+00 | 3445.0 |
6 | TraesCS6D01G075500 | chr3A | 97.346 | 1997 | 51 | 2 | 663 | 2659 | 126053444 | 126055438 | 0.000000e+00 | 3393.0 |
7 | TraesCS6D01G075500 | chr3A | 97.953 | 635 | 12 | 1 | 33 | 667 | 144698443 | 144699076 | 0.000000e+00 | 1099.0 |
8 | TraesCS6D01G075500 | chr3A | 97.638 | 635 | 13 | 2 | 33 | 667 | 126052044 | 126052676 | 0.000000e+00 | 1088.0 |
9 | TraesCS6D01G075500 | chr3A | 83.444 | 151 | 24 | 1 | 2866 | 3016 | 633846895 | 633846746 | 4.060000e-29 | 139.0 |
10 | TraesCS6D01G075500 | chr3A | 97.500 | 40 | 1 | 0 | 2815 | 2854 | 222104428 | 222104389 | 5.400000e-08 | 69.4 |
11 | TraesCS6D01G075500 | chr1A | 97.497 | 1998 | 48 | 2 | 663 | 2659 | 564157851 | 564155855 | 0.000000e+00 | 3411.0 |
12 | TraesCS6D01G075500 | chr1A | 97.638 | 635 | 14 | 1 | 33 | 667 | 564159253 | 564158620 | 0.000000e+00 | 1088.0 |
13 | TraesCS6D01G075500 | chr4A | 97.292 | 1994 | 53 | 1 | 666 | 2659 | 147533807 | 147531815 | 0.000000e+00 | 3382.0 |
14 | TraesCS6D01G075500 | chr4B | 96.897 | 1998 | 62 | 0 | 663 | 2660 | 167376573 | 167374576 | 0.000000e+00 | 3347.0 |
15 | TraesCS6D01G075500 | chr4B | 97.447 | 666 | 16 | 1 | 1 | 666 | 167377517 | 167376853 | 0.000000e+00 | 1134.0 |
16 | TraesCS6D01G075500 | chr2B | 96.695 | 1997 | 65 | 1 | 663 | 2659 | 311908511 | 311906516 | 0.000000e+00 | 3321.0 |
17 | TraesCS6D01G075500 | chr2B | 83.444 | 151 | 23 | 1 | 2866 | 3016 | 147493681 | 147493829 | 4.060000e-29 | 139.0 |
18 | TraesCS6D01G075500 | chr6B | 96.495 | 1997 | 69 | 1 | 663 | 2659 | 18467657 | 18469652 | 0.000000e+00 | 3299.0 |
19 | TraesCS6D01G075500 | chr6B | 97.601 | 667 | 15 | 1 | 1 | 667 | 18463154 | 18462489 | 0.000000e+00 | 1142.0 |
20 | TraesCS6D01G075500 | chr6B | 97.451 | 667 | 16 | 1 | 1 | 667 | 18466223 | 18466888 | 0.000000e+00 | 1136.0 |
21 | TraesCS6D01G075500 | chr3B | 96.414 | 2008 | 58 | 4 | 663 | 2669 | 228016948 | 228018942 | 0.000000e+00 | 3297.0 |
22 | TraesCS6D01G075500 | chr3B | 97.451 | 667 | 13 | 2 | 1 | 667 | 228015517 | 228016179 | 0.000000e+00 | 1134.0 |
23 | TraesCS6D01G075500 | chr7B | 97.748 | 666 | 14 | 1 | 2 | 667 | 660102504 | 660103168 | 0.000000e+00 | 1146.0 |
24 | TraesCS6D01G075500 | chr6A | 97.601 | 667 | 15 | 1 | 1 | 667 | 603906449 | 603907114 | 0.000000e+00 | 1142.0 |
25 | TraesCS6D01G075500 | chr6A | 87.940 | 199 | 21 | 3 | 2812 | 3008 | 51413382 | 51413185 | 6.500000e-57 | 231.0 |
26 | TraesCS6D01G075500 | chr6A | 84.615 | 143 | 21 | 1 | 2874 | 3016 | 88804031 | 88804172 | 1.130000e-29 | 141.0 |
27 | TraesCS6D01G075500 | chr5B | 86.301 | 146 | 20 | 0 | 2872 | 3017 | 23997926 | 23997781 | 3.110000e-35 | 159.0 |
28 | TraesCS6D01G075500 | chrUn | 83.444 | 151 | 23 | 2 | 2866 | 3016 | 103547088 | 103547236 | 4.060000e-29 | 139.0 |
29 | TraesCS6D01G075500 | chr1D | 83.562 | 146 | 22 | 2 | 2872 | 3016 | 434614923 | 434614779 | 5.250000e-28 | 135.0 |
30 | TraesCS6D01G075500 | chr1D | 82.895 | 152 | 22 | 3 | 2866 | 3017 | 7337506 | 7337653 | 1.890000e-27 | 134.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G075500 | chr6D | 39061755 | 39064771 | 3016 | True | 5572.00 | 5572 | 100.0000 | 1 | 3017 | 1 | chr6D.!!$R1 | 3016 |
1 | TraesCS6D01G075500 | chr7A | 542716729 | 542718725 | 1996 | False | 3445.00 | 3445 | 97.7980 | 663 | 2660 | 1 | chr7A.!!$F1 | 1997 |
2 | TraesCS6D01G075500 | chr7A | 660575337 | 660576141 | 804 | False | 546.35 | 1038 | 94.9215 | 1837 | 2659 | 2 | chr7A.!!$F2 | 822 |
3 | TraesCS6D01G075500 | chr3A | 144698443 | 144701840 | 3397 | False | 2272.00 | 3445 | 97.8750 | 33 | 2659 | 2 | chr3A.!!$F2 | 2626 |
4 | TraesCS6D01G075500 | chr3A | 126052044 | 126055438 | 3394 | False | 2240.50 | 3393 | 97.4920 | 33 | 2659 | 2 | chr3A.!!$F1 | 2626 |
5 | TraesCS6D01G075500 | chr1A | 564155855 | 564159253 | 3398 | True | 2249.50 | 3411 | 97.5675 | 33 | 2659 | 2 | chr1A.!!$R1 | 2626 |
6 | TraesCS6D01G075500 | chr4A | 147531815 | 147533807 | 1992 | True | 3382.00 | 3382 | 97.2920 | 666 | 2659 | 1 | chr4A.!!$R1 | 1993 |
7 | TraesCS6D01G075500 | chr4B | 167374576 | 167377517 | 2941 | True | 2240.50 | 3347 | 97.1720 | 1 | 2660 | 2 | chr4B.!!$R1 | 2659 |
8 | TraesCS6D01G075500 | chr2B | 311906516 | 311908511 | 1995 | True | 3321.00 | 3321 | 96.6950 | 663 | 2659 | 1 | chr2B.!!$R1 | 1996 |
9 | TraesCS6D01G075500 | chr6B | 18466223 | 18469652 | 3429 | False | 2217.50 | 3299 | 96.9730 | 1 | 2659 | 2 | chr6B.!!$F1 | 2658 |
10 | TraesCS6D01G075500 | chr6B | 18462489 | 18463154 | 665 | True | 1142.00 | 1142 | 97.6010 | 1 | 667 | 1 | chr6B.!!$R1 | 666 |
11 | TraesCS6D01G075500 | chr3B | 228015517 | 228018942 | 3425 | False | 2215.50 | 3297 | 96.9325 | 1 | 2669 | 2 | chr3B.!!$F1 | 2668 |
12 | TraesCS6D01G075500 | chr7B | 660102504 | 660103168 | 664 | False | 1146.00 | 1146 | 97.7480 | 2 | 667 | 1 | chr7B.!!$F1 | 665 |
13 | TraesCS6D01G075500 | chr6A | 603906449 | 603907114 | 665 | False | 1142.00 | 1142 | 97.6010 | 1 | 667 | 1 | chr6A.!!$F2 | 666 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
50 | 51 | 1.173043 | CTGAGAGCGAGGTTGAGAGT | 58.827 | 55.000 | 0.0 | 0.0 | 0.00 | 3.24 | F |
1332 | 2108 | 1.349357 | AGAGGACCACCAAAGAAGAGC | 59.651 | 52.381 | 0.0 | 0.0 | 38.94 | 4.09 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1987 | 2764 | 0.108585 | AGCCTCCTTTTGCTTCGTGA | 59.891 | 50.0 | 0.0 | 0.0 | 32.94 | 4.35 | R |
2981 | 3806 | 0.036388 | TCTCCTCCCATTGAACGCAC | 60.036 | 55.0 | 0.0 | 0.0 | 0.00 | 5.34 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
50 | 51 | 1.173043 | CTGAGAGCGAGGTTGAGAGT | 58.827 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
114 | 115 | 7.301420 | AGTAGAGGAAGATGAGGAATATCACA | 58.699 | 38.462 | 0.00 | 0.00 | 30.46 | 3.58 |
374 | 375 | 8.293867 | GTGCACAGTAATGGTAATTTTCTAACA | 58.706 | 33.333 | 13.17 | 0.00 | 0.00 | 2.41 |
629 | 630 | 6.639563 | TCATGGAATCGACATCAACTCTAAA | 58.360 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
721 | 1495 | 5.425217 | GGGTTGATTCTTCCCCACATAATTT | 59.575 | 40.000 | 5.74 | 0.00 | 37.09 | 1.82 |
933 | 1707 | 7.553760 | ACATCTCTTATCAATGCACACATACAA | 59.446 | 33.333 | 0.00 | 0.00 | 34.62 | 2.41 |
1072 | 1846 | 3.833650 | TCCACCACTACTAAAATCCACGA | 59.166 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
1156 | 1930 | 6.377146 | CCAACACTTATGCCCTATTTGTAAGT | 59.623 | 38.462 | 0.00 | 0.00 | 36.37 | 2.24 |
1158 | 1932 | 9.120538 | CAACACTTATGCCCTATTTGTAAGTAT | 57.879 | 33.333 | 0.00 | 0.00 | 34.75 | 2.12 |
1332 | 2108 | 1.349357 | AGAGGACCACCAAAGAAGAGC | 59.651 | 52.381 | 0.00 | 0.00 | 38.94 | 4.09 |
1421 | 2197 | 1.467342 | GCCAAGGTTAGCCACTTTACG | 59.533 | 52.381 | 0.00 | 0.00 | 37.19 | 3.18 |
1446 | 2222 | 9.999009 | CGCTCATGCTCATAATTATATGAAATT | 57.001 | 29.630 | 9.04 | 0.00 | 45.51 | 1.82 |
1804 | 2580 | 3.119388 | GCTGCCATGAATGTGTATGTGTT | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
1847 | 2623 | 1.761784 | TGTGGCCAACAAGAAAGCATT | 59.238 | 42.857 | 7.24 | 0.00 | 35.24 | 3.56 |
1927 | 2703 | 2.172505 | CACCTTCCTATGGTGCCACATA | 59.827 | 50.000 | 0.00 | 0.00 | 46.73 | 2.29 |
1987 | 2764 | 2.044252 | CCAGCCCTGCAATGAGCT | 60.044 | 61.111 | 0.00 | 0.00 | 45.94 | 4.09 |
2154 | 2931 | 3.921119 | TTTGACATGATGTGAACCTGC | 57.079 | 42.857 | 1.23 | 0.00 | 0.00 | 4.85 |
2163 | 2940 | 6.261603 | ACATGATGTGAACCTGCACTATTATG | 59.738 | 38.462 | 0.00 | 0.00 | 39.49 | 1.90 |
2201 | 2978 | 3.239449 | ACCTGAATGTGTGTAGAGGACA | 58.761 | 45.455 | 0.00 | 0.00 | 34.94 | 4.02 |
2529 | 3354 | 5.236282 | TCATGTCGGATTTAACGGTGTTAA | 58.764 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
2551 | 3376 | 2.302260 | TGCCAAAACTGACGGAAATGA | 58.698 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
2661 | 3486 | 4.339530 | GGCCAAATAAGGAATTCTCTCCAC | 59.660 | 45.833 | 5.23 | 0.00 | 38.02 | 4.02 |
2662 | 3487 | 4.035675 | GCCAAATAAGGAATTCTCTCCACG | 59.964 | 45.833 | 5.23 | 0.00 | 38.02 | 4.94 |
2663 | 3488 | 5.428253 | CCAAATAAGGAATTCTCTCCACGA | 58.572 | 41.667 | 5.23 | 0.00 | 38.02 | 4.35 |
2671 | 3496 | 8.839310 | AAGGAATTCTCTCCACGAATAATATG | 57.161 | 34.615 | 5.23 | 0.00 | 38.02 | 1.78 |
2672 | 3497 | 6.876257 | AGGAATTCTCTCCACGAATAATATGC | 59.124 | 38.462 | 5.23 | 0.00 | 38.02 | 3.14 |
2673 | 3498 | 6.092807 | GGAATTCTCTCCACGAATAATATGCC | 59.907 | 42.308 | 5.23 | 0.00 | 35.36 | 4.40 |
2674 | 3499 | 5.808366 | TTCTCTCCACGAATAATATGCCT | 57.192 | 39.130 | 0.00 | 0.00 | 0.00 | 4.75 |
2675 | 3500 | 5.808366 | TCTCTCCACGAATAATATGCCTT | 57.192 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
2676 | 3501 | 5.541845 | TCTCTCCACGAATAATATGCCTTG | 58.458 | 41.667 | 0.00 | 0.00 | 0.00 | 3.61 |
2677 | 3502 | 4.641396 | TCTCCACGAATAATATGCCTTGG | 58.359 | 43.478 | 0.00 | 0.00 | 0.00 | 3.61 |
2678 | 3503 | 4.346709 | TCTCCACGAATAATATGCCTTGGA | 59.653 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
2679 | 3504 | 5.013079 | TCTCCACGAATAATATGCCTTGGAT | 59.987 | 40.000 | 0.00 | 0.00 | 31.58 | 3.41 |
2680 | 3505 | 5.003160 | TCCACGAATAATATGCCTTGGATG | 58.997 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2681 | 3506 | 4.156556 | CCACGAATAATATGCCTTGGATGG | 59.843 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
2682 | 3507 | 5.003160 | CACGAATAATATGCCTTGGATGGA | 58.997 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2683 | 3508 | 5.122869 | CACGAATAATATGCCTTGGATGGAG | 59.877 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2684 | 3509 | 4.095483 | CGAATAATATGCCTTGGATGGAGC | 59.905 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
2685 | 3510 | 1.901591 | AATATGCCTTGGATGGAGCG | 58.098 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
2686 | 3511 | 0.037303 | ATATGCCTTGGATGGAGCGG | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
2687 | 3512 | 1.344953 | TATGCCTTGGATGGAGCGGT | 61.345 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
2688 | 3513 | 2.044946 | GCCTTGGATGGAGCGGTT | 60.045 | 61.111 | 0.00 | 0.00 | 0.00 | 4.44 |
2689 | 3514 | 2.409870 | GCCTTGGATGGAGCGGTTG | 61.410 | 63.158 | 0.00 | 0.00 | 0.00 | 3.77 |
2690 | 3515 | 1.002134 | CCTTGGATGGAGCGGTTGT | 60.002 | 57.895 | 0.00 | 0.00 | 0.00 | 3.32 |
2691 | 3516 | 1.308069 | CCTTGGATGGAGCGGTTGTG | 61.308 | 60.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2692 | 3517 | 1.303236 | TTGGATGGAGCGGTTGTGG | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
2693 | 3518 | 2.438434 | GGATGGAGCGGTTGTGGG | 60.438 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
2694 | 3519 | 3.134127 | GATGGAGCGGTTGTGGGC | 61.134 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
2701 | 3526 | 4.953868 | CGGTTGTGGGCGTCGTCA | 62.954 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
2702 | 3527 | 2.358247 | GGTTGTGGGCGTCGTCAT | 60.358 | 61.111 | 0.00 | 0.00 | 0.00 | 3.06 |
2703 | 3528 | 2.388232 | GGTTGTGGGCGTCGTCATC | 61.388 | 63.158 | 0.00 | 0.00 | 0.00 | 2.92 |
2704 | 3529 | 1.374252 | GTTGTGGGCGTCGTCATCT | 60.374 | 57.895 | 0.00 | 0.00 | 0.00 | 2.90 |
2705 | 3530 | 1.374125 | TTGTGGGCGTCGTCATCTG | 60.374 | 57.895 | 0.00 | 0.00 | 0.00 | 2.90 |
2706 | 3531 | 3.188786 | GTGGGCGTCGTCATCTGC | 61.189 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
2707 | 3532 | 3.690280 | TGGGCGTCGTCATCTGCA | 61.690 | 61.111 | 0.00 | 0.00 | 0.00 | 4.41 |
2708 | 3533 | 2.434185 | GGGCGTCGTCATCTGCAA | 60.434 | 61.111 | 0.00 | 0.00 | 0.00 | 4.08 |
2709 | 3534 | 2.456119 | GGGCGTCGTCATCTGCAAG | 61.456 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
2721 | 3546 | 4.408821 | TGCAAGAGCCCGCGGAAT | 62.409 | 61.111 | 30.73 | 15.32 | 41.13 | 3.01 |
2722 | 3547 | 3.134127 | GCAAGAGCCCGCGGAATT | 61.134 | 61.111 | 30.73 | 11.74 | 33.58 | 2.17 |
2723 | 3548 | 3.102097 | CAAGAGCCCGCGGAATTC | 58.898 | 61.111 | 30.73 | 20.24 | 0.00 | 2.17 |
2724 | 3549 | 1.450312 | CAAGAGCCCGCGGAATTCT | 60.450 | 57.895 | 30.73 | 22.21 | 0.00 | 2.40 |
2725 | 3550 | 1.153349 | AAGAGCCCGCGGAATTCTC | 60.153 | 57.895 | 30.73 | 24.43 | 0.00 | 2.87 |
2726 | 3551 | 1.617947 | AAGAGCCCGCGGAATTCTCT | 61.618 | 55.000 | 30.73 | 26.13 | 35.82 | 3.10 |
2727 | 3552 | 1.592939 | GAGCCCGCGGAATTCTCTC | 60.593 | 63.158 | 30.73 | 17.54 | 0.00 | 3.20 |
2728 | 3553 | 2.589159 | GCCCGCGGAATTCTCTCC | 60.589 | 66.667 | 30.73 | 0.00 | 0.00 | 3.71 |
2729 | 3554 | 2.900273 | CCCGCGGAATTCTCTCCA | 59.100 | 61.111 | 30.73 | 0.00 | 34.91 | 3.86 |
2730 | 3555 | 1.447643 | CCCGCGGAATTCTCTCCAT | 59.552 | 57.895 | 30.73 | 0.00 | 34.91 | 3.41 |
2731 | 3556 | 0.601311 | CCCGCGGAATTCTCTCCATC | 60.601 | 60.000 | 30.73 | 0.00 | 34.91 | 3.51 |
2732 | 3557 | 0.390860 | CCGCGGAATTCTCTCCATCT | 59.609 | 55.000 | 24.07 | 0.00 | 34.91 | 2.90 |
2733 | 3558 | 1.202580 | CCGCGGAATTCTCTCCATCTT | 60.203 | 52.381 | 24.07 | 0.00 | 34.91 | 2.40 |
2734 | 3559 | 2.131183 | CGCGGAATTCTCTCCATCTTC | 58.869 | 52.381 | 5.23 | 0.00 | 34.91 | 2.87 |
2735 | 3560 | 2.223923 | CGCGGAATTCTCTCCATCTTCT | 60.224 | 50.000 | 5.23 | 0.00 | 34.91 | 2.85 |
2736 | 3561 | 3.739519 | CGCGGAATTCTCTCCATCTTCTT | 60.740 | 47.826 | 5.23 | 0.00 | 34.91 | 2.52 |
2737 | 3562 | 3.559242 | GCGGAATTCTCTCCATCTTCTTG | 59.441 | 47.826 | 5.23 | 0.00 | 34.91 | 3.02 |
2738 | 3563 | 3.559242 | CGGAATTCTCTCCATCTTCTTGC | 59.441 | 47.826 | 5.23 | 0.00 | 34.91 | 4.01 |
2739 | 3564 | 3.882288 | GGAATTCTCTCCATCTTCTTGCC | 59.118 | 47.826 | 5.23 | 0.00 | 35.36 | 4.52 |
2740 | 3565 | 3.574354 | ATTCTCTCCATCTTCTTGCCC | 57.426 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
2741 | 3566 | 1.207791 | TCTCTCCATCTTCTTGCCCC | 58.792 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
2742 | 3567 | 0.179062 | CTCTCCATCTTCTTGCCCCG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
2743 | 3568 | 0.909610 | TCTCCATCTTCTTGCCCCGT | 60.910 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2744 | 3569 | 0.462759 | CTCCATCTTCTTGCCCCGTC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2745 | 3570 | 0.909610 | TCCATCTTCTTGCCCCGTCT | 60.910 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2746 | 3571 | 0.462759 | CCATCTTCTTGCCCCGTCTC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2747 | 3572 | 0.539051 | CATCTTCTTGCCCCGTCTCT | 59.461 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2748 | 3573 | 0.827368 | ATCTTCTTGCCCCGTCTCTC | 59.173 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2749 | 3574 | 0.251832 | TCTTCTTGCCCCGTCTCTCT | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2750 | 3575 | 1.005569 | TCTTCTTGCCCCGTCTCTCTA | 59.994 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
2751 | 3576 | 1.135333 | CTTCTTGCCCCGTCTCTCTAC | 59.865 | 57.143 | 0.00 | 0.00 | 0.00 | 2.59 |
2752 | 3577 | 0.039180 | TCTTGCCCCGTCTCTCTACA | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2753 | 3578 | 1.115467 | CTTGCCCCGTCTCTCTACAT | 58.885 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2754 | 3579 | 1.482593 | CTTGCCCCGTCTCTCTACATT | 59.517 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
2755 | 3580 | 0.824109 | TGCCCCGTCTCTCTACATTG | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2756 | 3581 | 0.824759 | GCCCCGTCTCTCTACATTGT | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2757 | 3582 | 1.207329 | GCCCCGTCTCTCTACATTGTT | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 2.83 |
2758 | 3583 | 2.354805 | GCCCCGTCTCTCTACATTGTTT | 60.355 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2759 | 3584 | 3.868754 | GCCCCGTCTCTCTACATTGTTTT | 60.869 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
2760 | 3585 | 4.324267 | CCCCGTCTCTCTACATTGTTTTT | 58.676 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
2782 | 3607 | 2.543777 | TTTCTCTCCACGTCCTTTGG | 57.456 | 50.000 | 0.00 | 0.00 | 35.18 | 3.28 |
2783 | 3608 | 1.420430 | TTCTCTCCACGTCCTTTGGT | 58.580 | 50.000 | 0.00 | 0.00 | 35.42 | 3.67 |
2784 | 3609 | 1.420430 | TCTCTCCACGTCCTTTGGTT | 58.580 | 50.000 | 0.00 | 0.00 | 35.42 | 3.67 |
2785 | 3610 | 1.766496 | TCTCTCCACGTCCTTTGGTTT | 59.234 | 47.619 | 0.00 | 0.00 | 35.42 | 3.27 |
2786 | 3611 | 2.171870 | TCTCTCCACGTCCTTTGGTTTT | 59.828 | 45.455 | 0.00 | 0.00 | 35.42 | 2.43 |
2787 | 3612 | 2.548480 | CTCTCCACGTCCTTTGGTTTTC | 59.452 | 50.000 | 0.00 | 0.00 | 35.42 | 2.29 |
2788 | 3613 | 2.171870 | TCTCCACGTCCTTTGGTTTTCT | 59.828 | 45.455 | 0.00 | 0.00 | 35.42 | 2.52 |
2789 | 3614 | 2.290641 | CTCCACGTCCTTTGGTTTTCTG | 59.709 | 50.000 | 0.00 | 0.00 | 35.42 | 3.02 |
2790 | 3615 | 2.021457 | CCACGTCCTTTGGTTTTCTGT | 58.979 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
2791 | 3616 | 3.118334 | TCCACGTCCTTTGGTTTTCTGTA | 60.118 | 43.478 | 0.00 | 0.00 | 35.42 | 2.74 |
2792 | 3617 | 3.250040 | CCACGTCCTTTGGTTTTCTGTAG | 59.750 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
2793 | 3618 | 4.124238 | CACGTCCTTTGGTTTTCTGTAGA | 58.876 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2794 | 3619 | 4.755123 | CACGTCCTTTGGTTTTCTGTAGAT | 59.245 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
2795 | 3620 | 5.238650 | CACGTCCTTTGGTTTTCTGTAGATT | 59.761 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2796 | 3621 | 5.826208 | ACGTCCTTTGGTTTTCTGTAGATTT | 59.174 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2797 | 3622 | 6.320418 | ACGTCCTTTGGTTTTCTGTAGATTTT | 59.680 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2798 | 3623 | 7.147966 | ACGTCCTTTGGTTTTCTGTAGATTTTT | 60.148 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
2799 | 3624 | 7.167468 | CGTCCTTTGGTTTTCTGTAGATTTTTG | 59.833 | 37.037 | 0.00 | 0.00 | 0.00 | 2.44 |
2800 | 3625 | 7.979537 | GTCCTTTGGTTTTCTGTAGATTTTTGT | 59.020 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2801 | 3626 | 8.536175 | TCCTTTGGTTTTCTGTAGATTTTTGTT | 58.464 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
2802 | 3627 | 9.810545 | CCTTTGGTTTTCTGTAGATTTTTGTTA | 57.189 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
2812 | 3637 | 9.010029 | TCTGTAGATTTTTGTTAATCTCAACCC | 57.990 | 33.333 | 2.39 | 0.00 | 42.39 | 4.11 |
2813 | 3638 | 8.698973 | TGTAGATTTTTGTTAATCTCAACCCA | 57.301 | 30.769 | 2.39 | 0.00 | 42.39 | 4.51 |
2814 | 3639 | 8.573035 | TGTAGATTTTTGTTAATCTCAACCCAC | 58.427 | 33.333 | 2.39 | 0.00 | 42.39 | 4.61 |
2815 | 3640 | 7.595819 | AGATTTTTGTTAATCTCAACCCACA | 57.404 | 32.000 | 0.00 | 0.00 | 40.01 | 4.17 |
2816 | 3641 | 7.433680 | AGATTTTTGTTAATCTCAACCCACAC | 58.566 | 34.615 | 0.00 | 0.00 | 40.01 | 3.82 |
2817 | 3642 | 6.531503 | TTTTTGTTAATCTCAACCCACACA | 57.468 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
2818 | 3643 | 6.531503 | TTTTGTTAATCTCAACCCACACAA | 57.468 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
2819 | 3644 | 6.531503 | TTTGTTAATCTCAACCCACACAAA | 57.468 | 33.333 | 0.00 | 0.00 | 32.02 | 2.83 |
2820 | 3645 | 6.531503 | TTGTTAATCTCAACCCACACAAAA | 57.468 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
2821 | 3646 | 5.897050 | TGTTAATCTCAACCCACACAAAAC | 58.103 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
2822 | 3647 | 5.419155 | TGTTAATCTCAACCCACACAAAACA | 59.581 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2823 | 3648 | 6.071334 | TGTTAATCTCAACCCACACAAAACAA | 60.071 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
2824 | 3649 | 5.413309 | AATCTCAACCCACACAAAACAAA | 57.587 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
2825 | 3650 | 4.873746 | TCTCAACCCACACAAAACAAAA | 57.126 | 36.364 | 0.00 | 0.00 | 0.00 | 2.44 |
2826 | 3651 | 5.215252 | TCTCAACCCACACAAAACAAAAA | 57.785 | 34.783 | 0.00 | 0.00 | 0.00 | 1.94 |
2827 | 3652 | 4.991687 | TCTCAACCCACACAAAACAAAAAC | 59.008 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
2828 | 3653 | 4.065789 | TCAACCCACACAAAACAAAAACC | 58.934 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
2829 | 3654 | 3.771577 | ACCCACACAAAACAAAAACCA | 57.228 | 38.095 | 0.00 | 0.00 | 0.00 | 3.67 |
2830 | 3655 | 4.086706 | ACCCACACAAAACAAAAACCAA | 57.913 | 36.364 | 0.00 | 0.00 | 0.00 | 3.67 |
2831 | 3656 | 3.815962 | ACCCACACAAAACAAAAACCAAC | 59.184 | 39.130 | 0.00 | 0.00 | 0.00 | 3.77 |
2832 | 3657 | 3.815401 | CCCACACAAAACAAAAACCAACA | 59.185 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
2833 | 3658 | 4.457257 | CCCACACAAAACAAAAACCAACAT | 59.543 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
2834 | 3659 | 5.643777 | CCCACACAAAACAAAAACCAACATA | 59.356 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2835 | 3660 | 6.317391 | CCCACACAAAACAAAAACCAACATAT | 59.683 | 34.615 | 0.00 | 0.00 | 0.00 | 1.78 |
2836 | 3661 | 7.495934 | CCCACACAAAACAAAAACCAACATATA | 59.504 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
2837 | 3662 | 9.050601 | CCACACAAAACAAAAACCAACATATAT | 57.949 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
2870 | 3695 | 9.314321 | ACTTGGAATAATATGTGACTTAACTCG | 57.686 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
2871 | 3696 | 9.314321 | CTTGGAATAATATGTGACTTAACTCGT | 57.686 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
2872 | 3697 | 8.642908 | TGGAATAATATGTGACTTAACTCGTG | 57.357 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
2873 | 3698 | 7.709182 | TGGAATAATATGTGACTTAACTCGTGG | 59.291 | 37.037 | 0.00 | 0.00 | 0.00 | 4.94 |
2874 | 3699 | 7.709613 | GGAATAATATGTGACTTAACTCGTGGT | 59.290 | 37.037 | 0.00 | 0.00 | 0.00 | 4.16 |
2875 | 3700 | 9.095065 | GAATAATATGTGACTTAACTCGTGGTT | 57.905 | 33.333 | 2.69 | 2.69 | 41.54 | 3.67 |
2876 | 3701 | 6.721571 | AATATGTGACTTAACTCGTGGTTG | 57.278 | 37.500 | 6.75 | 0.00 | 38.75 | 3.77 |
2877 | 3702 | 2.828877 | TGTGACTTAACTCGTGGTTGG | 58.171 | 47.619 | 6.75 | 3.44 | 38.75 | 3.77 |
2878 | 3703 | 2.431419 | TGTGACTTAACTCGTGGTTGGA | 59.569 | 45.455 | 6.75 | 0.00 | 38.75 | 3.53 |
2879 | 3704 | 3.070446 | TGTGACTTAACTCGTGGTTGGAT | 59.930 | 43.478 | 6.75 | 0.00 | 38.75 | 3.41 |
2880 | 3705 | 3.432252 | GTGACTTAACTCGTGGTTGGATG | 59.568 | 47.826 | 6.75 | 0.00 | 38.75 | 3.51 |
2881 | 3706 | 3.322541 | TGACTTAACTCGTGGTTGGATGA | 59.677 | 43.478 | 6.75 | 0.00 | 38.75 | 2.92 |
2882 | 3707 | 4.020573 | TGACTTAACTCGTGGTTGGATGAT | 60.021 | 41.667 | 6.75 | 0.00 | 38.75 | 2.45 |
2883 | 3708 | 4.906618 | ACTTAACTCGTGGTTGGATGATT | 58.093 | 39.130 | 6.75 | 0.00 | 38.75 | 2.57 |
2884 | 3709 | 6.045072 | ACTTAACTCGTGGTTGGATGATTA | 57.955 | 37.500 | 6.75 | 0.00 | 38.75 | 1.75 |
2885 | 3710 | 6.106673 | ACTTAACTCGTGGTTGGATGATTAG | 58.893 | 40.000 | 6.75 | 0.00 | 38.75 | 1.73 |
2886 | 3711 | 4.819105 | AACTCGTGGTTGGATGATTAGA | 57.181 | 40.909 | 0.00 | 0.00 | 36.70 | 2.10 |
2887 | 3712 | 4.819105 | ACTCGTGGTTGGATGATTAGAA | 57.181 | 40.909 | 0.00 | 0.00 | 0.00 | 2.10 |
2888 | 3713 | 4.759782 | ACTCGTGGTTGGATGATTAGAAG | 58.240 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
2889 | 3714 | 4.122776 | CTCGTGGTTGGATGATTAGAAGG | 58.877 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
2890 | 3715 | 3.118408 | TCGTGGTTGGATGATTAGAAGGG | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
2891 | 3716 | 3.370527 | CGTGGTTGGATGATTAGAAGGGT | 60.371 | 47.826 | 0.00 | 0.00 | 0.00 | 4.34 |
2892 | 3717 | 4.141801 | CGTGGTTGGATGATTAGAAGGGTA | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
2893 | 3718 | 5.368989 | GTGGTTGGATGATTAGAAGGGTAG | 58.631 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
2894 | 3719 | 5.036916 | TGGTTGGATGATTAGAAGGGTAGT | 58.963 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
2895 | 3720 | 5.104527 | TGGTTGGATGATTAGAAGGGTAGTG | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2896 | 3721 | 5.368989 | GTTGGATGATTAGAAGGGTAGTGG | 58.631 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
2897 | 3722 | 4.631234 | TGGATGATTAGAAGGGTAGTGGT | 58.369 | 43.478 | 0.00 | 0.00 | 0.00 | 4.16 |
2898 | 3723 | 5.784023 | TGGATGATTAGAAGGGTAGTGGTA | 58.216 | 41.667 | 0.00 | 0.00 | 0.00 | 3.25 |
2899 | 3724 | 6.390504 | TGGATGATTAGAAGGGTAGTGGTAT | 58.609 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2900 | 3725 | 6.270000 | TGGATGATTAGAAGGGTAGTGGTATG | 59.730 | 42.308 | 0.00 | 0.00 | 0.00 | 2.39 |
2901 | 3726 | 5.546621 | TGATTAGAAGGGTAGTGGTATGC | 57.453 | 43.478 | 0.00 | 0.00 | 0.00 | 3.14 |
2902 | 3727 | 4.347000 | TGATTAGAAGGGTAGTGGTATGCC | 59.653 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
2903 | 3728 | 1.508256 | AGAAGGGTAGTGGTATGCCC | 58.492 | 55.000 | 0.00 | 0.00 | 45.01 | 5.36 |
2904 | 3729 | 1.209621 | GAAGGGTAGTGGTATGCCCA | 58.790 | 55.000 | 0.00 | 0.00 | 46.95 | 5.36 |
2905 | 3730 | 1.141053 | GAAGGGTAGTGGTATGCCCAG | 59.859 | 57.143 | 0.00 | 0.00 | 46.95 | 4.45 |
2906 | 3731 | 1.148498 | GGGTAGTGGTATGCCCAGC | 59.852 | 63.158 | 0.00 | 0.00 | 46.45 | 4.85 |
2907 | 3732 | 1.148498 | GGTAGTGGTATGCCCAGCC | 59.852 | 63.158 | 0.00 | 0.00 | 46.45 | 4.85 |
2908 | 3733 | 1.148498 | GTAGTGGTATGCCCAGCCC | 59.852 | 63.158 | 0.00 | 0.00 | 46.45 | 5.19 |
2909 | 3734 | 1.307430 | TAGTGGTATGCCCAGCCCA | 60.307 | 57.895 | 0.00 | 0.00 | 46.45 | 5.36 |
2910 | 3735 | 0.697511 | TAGTGGTATGCCCAGCCCAT | 60.698 | 55.000 | 0.00 | 0.00 | 46.45 | 4.00 |
2911 | 3736 | 1.529244 | GTGGTATGCCCAGCCCATC | 60.529 | 63.158 | 0.00 | 0.00 | 46.45 | 3.51 |
2912 | 3737 | 2.005840 | TGGTATGCCCAGCCCATCA | 61.006 | 57.895 | 0.00 | 0.00 | 38.72 | 3.07 |
2913 | 3738 | 1.228367 | GGTATGCCCAGCCCATCAG | 60.228 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
2914 | 3739 | 1.708993 | GGTATGCCCAGCCCATCAGA | 61.709 | 60.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2915 | 3740 | 0.250640 | GTATGCCCAGCCCATCAGAG | 60.251 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2916 | 3741 | 0.695462 | TATGCCCAGCCCATCAGAGT | 60.695 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2917 | 3742 | 1.578215 | ATGCCCAGCCCATCAGAGTT | 61.578 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2918 | 3743 | 1.452833 | GCCCAGCCCATCAGAGTTC | 60.453 | 63.158 | 0.00 | 0.00 | 0.00 | 3.01 |
2919 | 3744 | 1.993653 | CCCAGCCCATCAGAGTTCA | 59.006 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
2920 | 3745 | 0.329261 | CCCAGCCCATCAGAGTTCAA | 59.671 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2921 | 3746 | 1.681166 | CCCAGCCCATCAGAGTTCAAG | 60.681 | 57.143 | 0.00 | 0.00 | 0.00 | 3.02 |
2922 | 3747 | 1.004044 | CCAGCCCATCAGAGTTCAAGT | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2923 | 3748 | 2.354259 | CAGCCCATCAGAGTTCAAGTC | 58.646 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
2924 | 3749 | 1.280421 | AGCCCATCAGAGTTCAAGTCC | 59.720 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2925 | 3750 | 1.280421 | GCCCATCAGAGTTCAAGTCCT | 59.720 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2926 | 3751 | 2.501723 | GCCCATCAGAGTTCAAGTCCTA | 59.498 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
2927 | 3752 | 3.680196 | GCCCATCAGAGTTCAAGTCCTAC | 60.680 | 52.174 | 0.00 | 0.00 | 0.00 | 3.18 |
2928 | 3753 | 3.515502 | CCCATCAGAGTTCAAGTCCTACA | 59.484 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
2929 | 3754 | 4.499183 | CCATCAGAGTTCAAGTCCTACAC | 58.501 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
2930 | 3755 | 4.221703 | CCATCAGAGTTCAAGTCCTACACT | 59.778 | 45.833 | 0.00 | 0.00 | 36.64 | 3.55 |
2942 | 3767 | 4.256920 | AGTCCTACACTTGACATTGATGC | 58.743 | 43.478 | 0.00 | 0.00 | 33.89 | 3.91 |
2943 | 3768 | 4.019860 | AGTCCTACACTTGACATTGATGCT | 60.020 | 41.667 | 0.00 | 0.00 | 33.89 | 3.79 |
2944 | 3769 | 4.331168 | GTCCTACACTTGACATTGATGCTC | 59.669 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
2945 | 3770 | 3.308053 | CCTACACTTGACATTGATGCTCG | 59.692 | 47.826 | 0.00 | 0.00 | 0.00 | 5.03 |
2946 | 3771 | 1.466167 | ACACTTGACATTGATGCTCGC | 59.534 | 47.619 | 0.00 | 0.00 | 0.00 | 5.03 |
2947 | 3772 | 1.465777 | CACTTGACATTGATGCTCGCA | 59.534 | 47.619 | 0.00 | 0.00 | 0.00 | 5.10 |
2948 | 3773 | 2.096980 | CACTTGACATTGATGCTCGCAT | 59.903 | 45.455 | 3.70 | 3.70 | 39.69 | 4.73 |
2949 | 3774 | 2.751259 | ACTTGACATTGATGCTCGCATT | 59.249 | 40.909 | 5.79 | 0.00 | 36.70 | 3.56 |
2950 | 3775 | 3.192001 | ACTTGACATTGATGCTCGCATTT | 59.808 | 39.130 | 5.79 | 0.00 | 36.70 | 2.32 |
2951 | 3776 | 3.853831 | TGACATTGATGCTCGCATTTT | 57.146 | 38.095 | 5.79 | 0.00 | 36.70 | 1.82 |
2952 | 3777 | 3.761657 | TGACATTGATGCTCGCATTTTC | 58.238 | 40.909 | 5.79 | 0.00 | 36.70 | 2.29 |
2953 | 3778 | 3.111098 | GACATTGATGCTCGCATTTTCC | 58.889 | 45.455 | 5.79 | 0.00 | 36.70 | 3.13 |
2954 | 3779 | 2.756760 | ACATTGATGCTCGCATTTTCCT | 59.243 | 40.909 | 5.79 | 0.00 | 36.70 | 3.36 |
2955 | 3780 | 2.925578 | TTGATGCTCGCATTTTCCTG | 57.074 | 45.000 | 5.79 | 0.00 | 36.70 | 3.86 |
2956 | 3781 | 2.112380 | TGATGCTCGCATTTTCCTGA | 57.888 | 45.000 | 5.79 | 0.00 | 36.70 | 3.86 |
2957 | 3782 | 2.435422 | TGATGCTCGCATTTTCCTGAA | 58.565 | 42.857 | 5.79 | 0.00 | 36.70 | 3.02 |
2958 | 3783 | 3.018856 | TGATGCTCGCATTTTCCTGAAT | 58.981 | 40.909 | 5.79 | 0.00 | 36.70 | 2.57 |
2959 | 3784 | 3.444742 | TGATGCTCGCATTTTCCTGAATT | 59.555 | 39.130 | 5.79 | 0.00 | 36.70 | 2.17 |
2960 | 3785 | 3.940209 | TGCTCGCATTTTCCTGAATTT | 57.060 | 38.095 | 0.00 | 0.00 | 0.00 | 1.82 |
2961 | 3786 | 5.125257 | TGATGCTCGCATTTTCCTGAATTTA | 59.875 | 36.000 | 5.79 | 0.00 | 36.70 | 1.40 |
2962 | 3787 | 5.581126 | TGCTCGCATTTTCCTGAATTTAT | 57.419 | 34.783 | 0.00 | 0.00 | 0.00 | 1.40 |
2963 | 3788 | 5.964758 | TGCTCGCATTTTCCTGAATTTATT | 58.035 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2964 | 3789 | 6.397272 | TGCTCGCATTTTCCTGAATTTATTT | 58.603 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2965 | 3790 | 6.531240 | TGCTCGCATTTTCCTGAATTTATTTC | 59.469 | 34.615 | 0.00 | 0.00 | 34.72 | 2.17 |
2966 | 3791 | 6.531240 | GCTCGCATTTTCCTGAATTTATTTCA | 59.469 | 34.615 | 0.00 | 0.00 | 42.09 | 2.69 |
2975 | 3800 | 4.981806 | TGAATTTATTTCAGCCCTTCCG | 57.018 | 40.909 | 0.00 | 0.00 | 39.44 | 4.30 |
2976 | 3801 | 3.699038 | TGAATTTATTTCAGCCCTTCCGG | 59.301 | 43.478 | 0.00 | 0.00 | 39.44 | 5.14 |
2977 | 3802 | 5.943695 | TGAATTTATTTCAGCCCTTCCGGC | 61.944 | 45.833 | 0.00 | 0.00 | 44.53 | 6.13 |
2993 | 3818 | 4.365287 | GCGATGTGCGTTCAATGG | 57.635 | 55.556 | 0.00 | 0.00 | 43.41 | 3.16 |
2994 | 3819 | 1.226379 | GCGATGTGCGTTCAATGGG | 60.226 | 57.895 | 0.00 | 0.00 | 43.41 | 4.00 |
2995 | 3820 | 1.643868 | GCGATGTGCGTTCAATGGGA | 61.644 | 55.000 | 0.00 | 0.00 | 43.41 | 4.37 |
2996 | 3821 | 0.374758 | CGATGTGCGTTCAATGGGAG | 59.625 | 55.000 | 0.00 | 0.00 | 34.64 | 4.30 |
2997 | 3822 | 0.734889 | GATGTGCGTTCAATGGGAGG | 59.265 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2998 | 3823 | 0.327924 | ATGTGCGTTCAATGGGAGGA | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2999 | 3824 | 0.321564 | TGTGCGTTCAATGGGAGGAG | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3000 | 3825 | 0.036388 | GTGCGTTCAATGGGAGGAGA | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3001 | 3826 | 0.036388 | TGCGTTCAATGGGAGGAGAC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3002 | 3827 | 1.084370 | GCGTTCAATGGGAGGAGACG | 61.084 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3003 | 3828 | 0.246635 | CGTTCAATGGGAGGAGACGT | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3004 | 3829 | 1.337823 | CGTTCAATGGGAGGAGACGTT | 60.338 | 52.381 | 0.00 | 0.00 | 0.00 | 3.99 |
3005 | 3830 | 2.347731 | GTTCAATGGGAGGAGACGTTC | 58.652 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
3013 | 3838 | 4.808649 | GGAGACGTTCCCATCGAC | 57.191 | 61.111 | 0.00 | 0.00 | 40.37 | 4.20 |
3014 | 3839 | 2.190756 | GGAGACGTTCCCATCGACT | 58.809 | 57.895 | 0.00 | 0.00 | 40.37 | 4.18 |
3015 | 3840 | 1.386533 | GGAGACGTTCCCATCGACTA | 58.613 | 55.000 | 0.00 | 0.00 | 40.37 | 2.59 |
3016 | 3841 | 1.955080 | GGAGACGTTCCCATCGACTAT | 59.045 | 52.381 | 0.00 | 0.00 | 40.37 | 2.12 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
50 | 51 | 1.133668 | TCATCCTCGCTCTCATCCTCA | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
242 | 243 | 3.181501 | TGCACTCTTTTCGGTGTCAAAAG | 60.182 | 43.478 | 1.00 | 1.00 | 40.71 | 2.27 |
243 | 244 | 2.750166 | TGCACTCTTTTCGGTGTCAAAA | 59.250 | 40.909 | 0.00 | 0.00 | 36.03 | 2.44 |
328 | 329 | 4.574013 | GCACTCATCTTCCATTGTAGAAGG | 59.426 | 45.833 | 1.03 | 0.00 | 40.94 | 3.46 |
374 | 375 | 9.189156 | ACCATAAATTAAGCACACATGAGTAAT | 57.811 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
396 | 397 | 7.126733 | AGTACTAGAGTAAAGACCATGACCAT | 58.873 | 38.462 | 0.00 | 0.00 | 31.52 | 3.55 |
629 | 630 | 5.151454 | AGCAGCTTACCCATATAGACTCTT | 58.849 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
721 | 1495 | 7.896811 | TCTCTAGTCTTTGCATTCAACTTCTA | 58.103 | 34.615 | 0.00 | 0.00 | 30.75 | 2.10 |
1072 | 1846 | 2.835764 | TCTCAGTTTTATGCCTACCCGT | 59.164 | 45.455 | 0.00 | 0.00 | 0.00 | 5.28 |
1156 | 1930 | 7.557724 | CATTTATGCCAATGATGCCCATAATA | 58.442 | 34.615 | 0.00 | 0.00 | 36.39 | 0.98 |
1158 | 1932 | 5.795972 | CATTTATGCCAATGATGCCCATAA | 58.204 | 37.500 | 0.00 | 0.00 | 36.39 | 1.90 |
1272 | 2048 | 3.417069 | AGTTAACATGTGTGGCTGCTA | 57.583 | 42.857 | 8.61 | 0.00 | 0.00 | 3.49 |
1332 | 2108 | 0.314935 | ATGCTTTGGTGGTCTTTGCG | 59.685 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1490 | 2266 | 7.473027 | TTCTCTTTTTCGTAGTTGTAGGTTG | 57.527 | 36.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1648 | 2424 | 5.412617 | ACTCCCTTTCCCTTTTTCCTTAA | 57.587 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
1734 | 2510 | 5.394115 | CCCAGGTTAACAATAGAACAATGCC | 60.394 | 44.000 | 8.10 | 0.00 | 0.00 | 4.40 |
1804 | 2580 | 5.009911 | CACAAATGGGTTGAGTTCTTGATCA | 59.990 | 40.000 | 0.00 | 0.00 | 39.87 | 2.92 |
1847 | 2623 | 5.363101 | TGGCATGTAATTTCAAAGCAACAA | 58.637 | 33.333 | 12.53 | 0.00 | 0.00 | 2.83 |
1987 | 2764 | 0.108585 | AGCCTCCTTTTGCTTCGTGA | 59.891 | 50.000 | 0.00 | 0.00 | 32.94 | 4.35 |
2154 | 2931 | 9.586435 | TTCACATAGAGTTCACACATAATAGTG | 57.414 | 33.333 | 0.00 | 0.00 | 44.93 | 2.74 |
2163 | 2940 | 4.883083 | TCAGGTTCACATAGAGTTCACAC | 58.117 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
2529 | 3354 | 3.320541 | TCATTTCCGTCAGTTTTGGCAAT | 59.679 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |
2661 | 3486 | 4.095483 | GCTCCATCCAAGGCATATTATTCG | 59.905 | 45.833 | 0.00 | 0.00 | 0.00 | 3.34 |
2662 | 3487 | 4.095483 | CGCTCCATCCAAGGCATATTATTC | 59.905 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
2663 | 3488 | 4.012374 | CGCTCCATCCAAGGCATATTATT | 58.988 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2669 | 3494 | 2.194056 | CCGCTCCATCCAAGGCAT | 59.806 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
2670 | 3495 | 2.905996 | AACCGCTCCATCCAAGGCA | 61.906 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
2671 | 3496 | 2.044946 | AACCGCTCCATCCAAGGC | 60.045 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
2672 | 3497 | 1.002134 | ACAACCGCTCCATCCAAGG | 60.002 | 57.895 | 0.00 | 0.00 | 0.00 | 3.61 |
2673 | 3498 | 1.308069 | CCACAACCGCTCCATCCAAG | 61.308 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2674 | 3499 | 1.303236 | CCACAACCGCTCCATCCAA | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
2675 | 3500 | 2.350895 | CCACAACCGCTCCATCCA | 59.649 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
2676 | 3501 | 2.438434 | CCCACAACCGCTCCATCC | 60.438 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2677 | 3502 | 3.134127 | GCCCACAACCGCTCCATC | 61.134 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2684 | 3509 | 4.953868 | TGACGACGCCCACAACCG | 62.954 | 66.667 | 0.00 | 0.00 | 0.00 | 4.44 |
2685 | 3510 | 2.358247 | ATGACGACGCCCACAACC | 60.358 | 61.111 | 0.00 | 0.00 | 0.00 | 3.77 |
2686 | 3511 | 1.374252 | AGATGACGACGCCCACAAC | 60.374 | 57.895 | 0.00 | 0.00 | 0.00 | 3.32 |
2687 | 3512 | 1.374125 | CAGATGACGACGCCCACAA | 60.374 | 57.895 | 0.00 | 0.00 | 0.00 | 3.33 |
2688 | 3513 | 2.261361 | CAGATGACGACGCCCACA | 59.739 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
2689 | 3514 | 3.188786 | GCAGATGACGACGCCCAC | 61.189 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
2690 | 3515 | 3.233259 | TTGCAGATGACGACGCCCA | 62.233 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
2691 | 3516 | 2.434185 | TTGCAGATGACGACGCCC | 60.434 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
2692 | 3517 | 1.416813 | CTCTTGCAGATGACGACGCC | 61.417 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
2693 | 3518 | 1.994467 | CTCTTGCAGATGACGACGC | 59.006 | 57.895 | 0.00 | 0.00 | 0.00 | 5.19 |
2694 | 3519 | 1.416813 | GGCTCTTGCAGATGACGACG | 61.417 | 60.000 | 0.00 | 0.00 | 41.91 | 5.12 |
2695 | 3520 | 1.086634 | GGGCTCTTGCAGATGACGAC | 61.087 | 60.000 | 0.00 | 0.00 | 41.91 | 4.34 |
2696 | 3521 | 1.219124 | GGGCTCTTGCAGATGACGA | 59.781 | 57.895 | 0.00 | 0.00 | 41.91 | 4.20 |
2697 | 3522 | 2.169789 | CGGGCTCTTGCAGATGACG | 61.170 | 63.158 | 0.00 | 0.00 | 41.91 | 4.35 |
2698 | 3523 | 2.467826 | GCGGGCTCTTGCAGATGAC | 61.468 | 63.158 | 0.00 | 0.00 | 41.91 | 3.06 |
2699 | 3524 | 2.124983 | GCGGGCTCTTGCAGATGA | 60.125 | 61.111 | 0.00 | 0.00 | 41.91 | 2.92 |
2700 | 3525 | 3.570638 | CGCGGGCTCTTGCAGATG | 61.571 | 66.667 | 0.00 | 0.00 | 41.91 | 2.90 |
2701 | 3526 | 4.845580 | CCGCGGGCTCTTGCAGAT | 62.846 | 66.667 | 20.10 | 0.00 | 41.91 | 2.90 |
2704 | 3529 | 3.918253 | AATTCCGCGGGCTCTTGCA | 62.918 | 57.895 | 27.83 | 0.00 | 41.91 | 4.08 |
2705 | 3530 | 3.113386 | GAATTCCGCGGGCTCTTGC | 62.113 | 63.158 | 27.83 | 4.87 | 38.76 | 4.01 |
2706 | 3531 | 1.432270 | GAGAATTCCGCGGGCTCTTG | 61.432 | 60.000 | 27.83 | 0.00 | 0.00 | 3.02 |
2707 | 3532 | 1.153349 | GAGAATTCCGCGGGCTCTT | 60.153 | 57.895 | 27.83 | 13.52 | 0.00 | 2.85 |
2708 | 3533 | 2.022240 | GAGAGAATTCCGCGGGCTCT | 62.022 | 60.000 | 28.06 | 28.06 | 38.55 | 4.09 |
2709 | 3534 | 1.592939 | GAGAGAATTCCGCGGGCTC | 60.593 | 63.158 | 27.83 | 24.16 | 0.00 | 4.70 |
2710 | 3535 | 2.501610 | GAGAGAATTCCGCGGGCT | 59.498 | 61.111 | 27.83 | 17.43 | 0.00 | 5.19 |
2711 | 3536 | 2.589159 | GGAGAGAATTCCGCGGGC | 60.589 | 66.667 | 27.83 | 12.63 | 0.00 | 6.13 |
2712 | 3537 | 0.601311 | GATGGAGAGAATTCCGCGGG | 60.601 | 60.000 | 27.83 | 6.80 | 40.27 | 6.13 |
2713 | 3538 | 0.390860 | AGATGGAGAGAATTCCGCGG | 59.609 | 55.000 | 22.12 | 22.12 | 40.27 | 6.46 |
2714 | 3539 | 2.131183 | GAAGATGGAGAGAATTCCGCG | 58.869 | 52.381 | 0.00 | 0.00 | 40.27 | 6.46 |
2715 | 3540 | 3.467374 | AGAAGATGGAGAGAATTCCGC | 57.533 | 47.619 | 0.65 | 0.00 | 40.27 | 5.54 |
2716 | 3541 | 3.559242 | GCAAGAAGATGGAGAGAATTCCG | 59.441 | 47.826 | 0.65 | 0.00 | 40.27 | 4.30 |
2717 | 3542 | 3.882288 | GGCAAGAAGATGGAGAGAATTCC | 59.118 | 47.826 | 0.65 | 0.00 | 37.77 | 3.01 |
2718 | 3543 | 3.882288 | GGGCAAGAAGATGGAGAGAATTC | 59.118 | 47.826 | 0.00 | 0.00 | 0.00 | 2.17 |
2719 | 3544 | 3.372458 | GGGGCAAGAAGATGGAGAGAATT | 60.372 | 47.826 | 0.00 | 0.00 | 0.00 | 2.17 |
2720 | 3545 | 2.174424 | GGGGCAAGAAGATGGAGAGAAT | 59.826 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2721 | 3546 | 1.561542 | GGGGCAAGAAGATGGAGAGAA | 59.438 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
2722 | 3547 | 1.207791 | GGGGCAAGAAGATGGAGAGA | 58.792 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2723 | 3548 | 0.179062 | CGGGGCAAGAAGATGGAGAG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2724 | 3549 | 0.909610 | ACGGGGCAAGAAGATGGAGA | 60.910 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2725 | 3550 | 0.462759 | GACGGGGCAAGAAGATGGAG | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2726 | 3551 | 0.909610 | AGACGGGGCAAGAAGATGGA | 60.910 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2727 | 3552 | 0.462759 | GAGACGGGGCAAGAAGATGG | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2728 | 3553 | 0.539051 | AGAGACGGGGCAAGAAGATG | 59.461 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2729 | 3554 | 0.827368 | GAGAGACGGGGCAAGAAGAT | 59.173 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2730 | 3555 | 0.251832 | AGAGAGACGGGGCAAGAAGA | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2731 | 3556 | 1.135333 | GTAGAGAGACGGGGCAAGAAG | 59.865 | 57.143 | 0.00 | 0.00 | 0.00 | 2.85 |
2732 | 3557 | 1.183549 | GTAGAGAGACGGGGCAAGAA | 58.816 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2733 | 3558 | 0.039180 | TGTAGAGAGACGGGGCAAGA | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2734 | 3559 | 1.115467 | ATGTAGAGAGACGGGGCAAG | 58.885 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
2735 | 3560 | 1.207089 | CAATGTAGAGAGACGGGGCAA | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 4.52 |
2736 | 3561 | 0.824109 | CAATGTAGAGAGACGGGGCA | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2737 | 3562 | 0.824759 | ACAATGTAGAGAGACGGGGC | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
2738 | 3563 | 3.611766 | AAACAATGTAGAGAGACGGGG | 57.388 | 47.619 | 0.00 | 0.00 | 0.00 | 5.73 |
2761 | 3586 | 3.211045 | CCAAAGGACGTGGAGAGAAAAA | 58.789 | 45.455 | 0.00 | 0.00 | 38.54 | 1.94 |
2762 | 3587 | 2.171870 | ACCAAAGGACGTGGAGAGAAAA | 59.828 | 45.455 | 0.00 | 0.00 | 39.62 | 2.29 |
2763 | 3588 | 1.766496 | ACCAAAGGACGTGGAGAGAAA | 59.234 | 47.619 | 0.00 | 0.00 | 39.62 | 2.52 |
2764 | 3589 | 1.420430 | ACCAAAGGACGTGGAGAGAA | 58.580 | 50.000 | 0.00 | 0.00 | 39.62 | 2.87 |
2765 | 3590 | 1.420430 | AACCAAAGGACGTGGAGAGA | 58.580 | 50.000 | 0.00 | 0.00 | 39.62 | 3.10 |
2766 | 3591 | 2.256117 | AAACCAAAGGACGTGGAGAG | 57.744 | 50.000 | 0.00 | 0.00 | 39.62 | 3.20 |
2767 | 3592 | 2.171870 | AGAAAACCAAAGGACGTGGAGA | 59.828 | 45.455 | 0.00 | 0.00 | 39.62 | 3.71 |
2768 | 3593 | 2.290641 | CAGAAAACCAAAGGACGTGGAG | 59.709 | 50.000 | 0.00 | 0.00 | 39.62 | 3.86 |
2769 | 3594 | 2.294074 | CAGAAAACCAAAGGACGTGGA | 58.706 | 47.619 | 0.00 | 0.00 | 39.62 | 4.02 |
2770 | 3595 | 2.021457 | ACAGAAAACCAAAGGACGTGG | 58.979 | 47.619 | 0.00 | 0.00 | 42.28 | 4.94 |
2771 | 3596 | 4.124238 | TCTACAGAAAACCAAAGGACGTG | 58.876 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 |
2772 | 3597 | 4.411256 | TCTACAGAAAACCAAAGGACGT | 57.589 | 40.909 | 0.00 | 0.00 | 0.00 | 4.34 |
2773 | 3598 | 5.941948 | AATCTACAGAAAACCAAAGGACG | 57.058 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
2774 | 3599 | 7.979537 | ACAAAAATCTACAGAAAACCAAAGGAC | 59.020 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2775 | 3600 | 8.073467 | ACAAAAATCTACAGAAAACCAAAGGA | 57.927 | 30.769 | 0.00 | 0.00 | 0.00 | 3.36 |
2776 | 3601 | 8.716646 | AACAAAAATCTACAGAAAACCAAAGG | 57.283 | 30.769 | 0.00 | 0.00 | 0.00 | 3.11 |
2786 | 3611 | 9.010029 | GGGTTGAGATTAACAAAAATCTACAGA | 57.990 | 33.333 | 0.00 | 0.00 | 44.38 | 3.41 |
2787 | 3612 | 8.792633 | TGGGTTGAGATTAACAAAAATCTACAG | 58.207 | 33.333 | 0.00 | 0.00 | 44.38 | 2.74 |
2788 | 3613 | 8.573035 | GTGGGTTGAGATTAACAAAAATCTACA | 58.427 | 33.333 | 0.00 | 0.00 | 44.38 | 2.74 |
2789 | 3614 | 8.573035 | TGTGGGTTGAGATTAACAAAAATCTAC | 58.427 | 33.333 | 0.00 | 0.00 | 44.38 | 2.59 |
2790 | 3615 | 8.573035 | GTGTGGGTTGAGATTAACAAAAATCTA | 58.427 | 33.333 | 0.00 | 0.00 | 44.38 | 1.98 |
2791 | 3616 | 7.069331 | TGTGTGGGTTGAGATTAACAAAAATCT | 59.931 | 33.333 | 0.00 | 0.00 | 46.46 | 2.40 |
2792 | 3617 | 7.206687 | TGTGTGGGTTGAGATTAACAAAAATC | 58.793 | 34.615 | 0.00 | 0.00 | 36.33 | 2.17 |
2793 | 3618 | 7.118496 | TGTGTGGGTTGAGATTAACAAAAAT | 57.882 | 32.000 | 0.00 | 0.00 | 32.22 | 1.82 |
2794 | 3619 | 6.531503 | TGTGTGGGTTGAGATTAACAAAAA | 57.468 | 33.333 | 0.00 | 0.00 | 32.22 | 1.94 |
2795 | 3620 | 6.531503 | TTGTGTGGGTTGAGATTAACAAAA | 57.468 | 33.333 | 0.00 | 0.00 | 32.22 | 2.44 |
2796 | 3621 | 6.531503 | TTTGTGTGGGTTGAGATTAACAAA | 57.468 | 33.333 | 0.00 | 0.00 | 34.80 | 2.83 |
2797 | 3622 | 6.071334 | TGTTTTGTGTGGGTTGAGATTAACAA | 60.071 | 34.615 | 0.00 | 0.00 | 32.22 | 2.83 |
2798 | 3623 | 5.419155 | TGTTTTGTGTGGGTTGAGATTAACA | 59.581 | 36.000 | 0.00 | 0.00 | 32.22 | 2.41 |
2799 | 3624 | 5.897050 | TGTTTTGTGTGGGTTGAGATTAAC | 58.103 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
2800 | 3625 | 6.531503 | TTGTTTTGTGTGGGTTGAGATTAA | 57.468 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2801 | 3626 | 6.531503 | TTTGTTTTGTGTGGGTTGAGATTA | 57.468 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
2802 | 3627 | 5.413309 | TTTGTTTTGTGTGGGTTGAGATT | 57.587 | 34.783 | 0.00 | 0.00 | 0.00 | 2.40 |
2803 | 3628 | 5.413309 | TTTTGTTTTGTGTGGGTTGAGAT | 57.587 | 34.783 | 0.00 | 0.00 | 0.00 | 2.75 |
2804 | 3629 | 4.873746 | TTTTGTTTTGTGTGGGTTGAGA | 57.126 | 36.364 | 0.00 | 0.00 | 0.00 | 3.27 |
2805 | 3630 | 4.153296 | GGTTTTTGTTTTGTGTGGGTTGAG | 59.847 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2806 | 3631 | 4.065789 | GGTTTTTGTTTTGTGTGGGTTGA | 58.934 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
2807 | 3632 | 3.815401 | TGGTTTTTGTTTTGTGTGGGTTG | 59.185 | 39.130 | 0.00 | 0.00 | 0.00 | 3.77 |
2808 | 3633 | 4.086706 | TGGTTTTTGTTTTGTGTGGGTT | 57.913 | 36.364 | 0.00 | 0.00 | 0.00 | 4.11 |
2809 | 3634 | 3.771577 | TGGTTTTTGTTTTGTGTGGGT | 57.228 | 38.095 | 0.00 | 0.00 | 0.00 | 4.51 |
2810 | 3635 | 3.815401 | TGTTGGTTTTTGTTTTGTGTGGG | 59.185 | 39.130 | 0.00 | 0.00 | 0.00 | 4.61 |
2811 | 3636 | 5.619625 | ATGTTGGTTTTTGTTTTGTGTGG | 57.380 | 34.783 | 0.00 | 0.00 | 0.00 | 4.17 |
2844 | 3669 | 9.314321 | CGAGTTAAGTCACATATTATTCCAAGT | 57.686 | 33.333 | 10.83 | 0.00 | 0.00 | 3.16 |
2845 | 3670 | 9.314321 | ACGAGTTAAGTCACATATTATTCCAAG | 57.686 | 33.333 | 10.83 | 0.00 | 0.00 | 3.61 |
2846 | 3671 | 9.093970 | CACGAGTTAAGTCACATATTATTCCAA | 57.906 | 33.333 | 10.83 | 0.00 | 0.00 | 3.53 |
2847 | 3672 | 7.709182 | CCACGAGTTAAGTCACATATTATTCCA | 59.291 | 37.037 | 10.83 | 0.00 | 0.00 | 3.53 |
2848 | 3673 | 7.709613 | ACCACGAGTTAAGTCACATATTATTCC | 59.290 | 37.037 | 10.83 | 0.00 | 0.00 | 3.01 |
2849 | 3674 | 8.644318 | ACCACGAGTTAAGTCACATATTATTC | 57.356 | 34.615 | 10.83 | 0.00 | 0.00 | 1.75 |
2850 | 3675 | 8.879759 | CAACCACGAGTTAAGTCACATATTATT | 58.120 | 33.333 | 10.83 | 0.00 | 36.18 | 1.40 |
2851 | 3676 | 7.494625 | CCAACCACGAGTTAAGTCACATATTAT | 59.505 | 37.037 | 10.83 | 0.00 | 36.18 | 1.28 |
2852 | 3677 | 6.814644 | CCAACCACGAGTTAAGTCACATATTA | 59.185 | 38.462 | 10.83 | 0.00 | 36.18 | 0.98 |
2853 | 3678 | 5.642063 | CCAACCACGAGTTAAGTCACATATT | 59.358 | 40.000 | 10.83 | 0.00 | 36.18 | 1.28 |
2854 | 3679 | 5.046878 | TCCAACCACGAGTTAAGTCACATAT | 60.047 | 40.000 | 10.83 | 0.00 | 36.18 | 1.78 |
2855 | 3680 | 4.281435 | TCCAACCACGAGTTAAGTCACATA | 59.719 | 41.667 | 10.83 | 0.00 | 36.18 | 2.29 |
2856 | 3681 | 3.070446 | TCCAACCACGAGTTAAGTCACAT | 59.930 | 43.478 | 10.83 | 0.00 | 36.18 | 3.21 |
2857 | 3682 | 2.431419 | TCCAACCACGAGTTAAGTCACA | 59.569 | 45.455 | 10.83 | 0.00 | 36.18 | 3.58 |
2858 | 3683 | 3.102052 | TCCAACCACGAGTTAAGTCAC | 57.898 | 47.619 | 10.83 | 0.00 | 36.18 | 3.67 |
2859 | 3684 | 3.322541 | TCATCCAACCACGAGTTAAGTCA | 59.677 | 43.478 | 10.83 | 0.00 | 36.18 | 3.41 |
2860 | 3685 | 3.921677 | TCATCCAACCACGAGTTAAGTC | 58.078 | 45.455 | 0.00 | 0.00 | 36.18 | 3.01 |
2861 | 3686 | 4.553330 | ATCATCCAACCACGAGTTAAGT | 57.447 | 40.909 | 0.00 | 0.00 | 36.18 | 2.24 |
2862 | 3687 | 6.338146 | TCTAATCATCCAACCACGAGTTAAG | 58.662 | 40.000 | 0.00 | 0.00 | 36.18 | 1.85 |
2863 | 3688 | 6.288941 | TCTAATCATCCAACCACGAGTTAA | 57.711 | 37.500 | 0.00 | 0.00 | 36.18 | 2.01 |
2864 | 3689 | 5.925506 | TCTAATCATCCAACCACGAGTTA | 57.074 | 39.130 | 0.00 | 0.00 | 36.18 | 2.24 |
2865 | 3690 | 4.819105 | TCTAATCATCCAACCACGAGTT | 57.181 | 40.909 | 0.00 | 0.00 | 40.16 | 3.01 |
2866 | 3691 | 4.383118 | CCTTCTAATCATCCAACCACGAGT | 60.383 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
2867 | 3692 | 4.122776 | CCTTCTAATCATCCAACCACGAG | 58.877 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
2868 | 3693 | 3.118408 | CCCTTCTAATCATCCAACCACGA | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
2869 | 3694 | 3.206150 | CCCTTCTAATCATCCAACCACG | 58.794 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2870 | 3695 | 4.236527 | ACCCTTCTAATCATCCAACCAC | 57.763 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
2871 | 3696 | 5.036916 | ACTACCCTTCTAATCATCCAACCA | 58.963 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
2872 | 3697 | 5.368989 | CACTACCCTTCTAATCATCCAACC | 58.631 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
2873 | 3698 | 5.104485 | ACCACTACCCTTCTAATCATCCAAC | 60.104 | 44.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2874 | 3699 | 5.036916 | ACCACTACCCTTCTAATCATCCAA | 58.963 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
2875 | 3700 | 4.631234 | ACCACTACCCTTCTAATCATCCA | 58.369 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
2876 | 3701 | 6.702329 | CATACCACTACCCTTCTAATCATCC | 58.298 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2877 | 3702 | 6.166982 | GCATACCACTACCCTTCTAATCATC | 58.833 | 44.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2878 | 3703 | 5.013183 | GGCATACCACTACCCTTCTAATCAT | 59.987 | 44.000 | 0.00 | 0.00 | 35.26 | 2.45 |
2879 | 3704 | 4.347000 | GGCATACCACTACCCTTCTAATCA | 59.653 | 45.833 | 0.00 | 0.00 | 35.26 | 2.57 |
2880 | 3705 | 4.262938 | GGGCATACCACTACCCTTCTAATC | 60.263 | 50.000 | 0.00 | 0.00 | 39.42 | 1.75 |
2881 | 3706 | 3.651423 | GGGCATACCACTACCCTTCTAAT | 59.349 | 47.826 | 0.00 | 0.00 | 39.42 | 1.73 |
2882 | 3707 | 3.043418 | GGGCATACCACTACCCTTCTAA | 58.957 | 50.000 | 0.00 | 0.00 | 39.42 | 2.10 |
2883 | 3708 | 2.022820 | TGGGCATACCACTACCCTTCTA | 60.023 | 50.000 | 0.00 | 0.00 | 46.80 | 2.10 |
2884 | 3709 | 1.274184 | TGGGCATACCACTACCCTTCT | 60.274 | 52.381 | 0.00 | 0.00 | 46.80 | 2.85 |
2885 | 3710 | 1.141053 | CTGGGCATACCACTACCCTTC | 59.859 | 57.143 | 0.00 | 0.00 | 46.80 | 3.46 |
2886 | 3711 | 1.213296 | CTGGGCATACCACTACCCTT | 58.787 | 55.000 | 0.00 | 0.00 | 46.80 | 3.95 |
2887 | 3712 | 1.345715 | GCTGGGCATACCACTACCCT | 61.346 | 60.000 | 0.00 | 0.00 | 46.80 | 4.34 |
2888 | 3713 | 1.148498 | GCTGGGCATACCACTACCC | 59.852 | 63.158 | 0.00 | 0.00 | 46.80 | 3.69 |
2889 | 3714 | 1.148498 | GGCTGGGCATACCACTACC | 59.852 | 63.158 | 0.00 | 0.00 | 46.80 | 3.18 |
2890 | 3715 | 1.148498 | GGGCTGGGCATACCACTAC | 59.852 | 63.158 | 0.00 | 0.00 | 46.80 | 2.73 |
2891 | 3716 | 0.697511 | ATGGGCTGGGCATACCACTA | 60.698 | 55.000 | 0.00 | 0.00 | 46.80 | 2.74 |
2892 | 3717 | 1.999634 | GATGGGCTGGGCATACCACT | 62.000 | 60.000 | 0.00 | 0.00 | 46.80 | 4.00 |
2893 | 3718 | 1.529244 | GATGGGCTGGGCATACCAC | 60.529 | 63.158 | 0.00 | 0.00 | 46.80 | 4.16 |
2895 | 3720 | 1.228367 | CTGATGGGCTGGGCATACC | 60.228 | 63.158 | 0.00 | 0.00 | 40.81 | 2.73 |
2896 | 3721 | 0.250640 | CTCTGATGGGCTGGGCATAC | 60.251 | 60.000 | 0.00 | 0.00 | 0.00 | 2.39 |
2897 | 3722 | 0.695462 | ACTCTGATGGGCTGGGCATA | 60.695 | 55.000 | 0.00 | 0.00 | 0.00 | 3.14 |
2898 | 3723 | 1.578215 | AACTCTGATGGGCTGGGCAT | 61.578 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2899 | 3724 | 2.202236 | GAACTCTGATGGGCTGGGCA | 62.202 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2900 | 3725 | 1.452833 | GAACTCTGATGGGCTGGGC | 60.453 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
2901 | 3726 | 0.329261 | TTGAACTCTGATGGGCTGGG | 59.671 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2902 | 3727 | 1.004044 | ACTTGAACTCTGATGGGCTGG | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
2903 | 3728 | 2.354259 | GACTTGAACTCTGATGGGCTG | 58.646 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
2904 | 3729 | 1.280421 | GGACTTGAACTCTGATGGGCT | 59.720 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
2905 | 3730 | 1.280421 | AGGACTTGAACTCTGATGGGC | 59.720 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
2906 | 3731 | 3.515502 | TGTAGGACTTGAACTCTGATGGG | 59.484 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
2907 | 3732 | 4.221703 | AGTGTAGGACTTGAACTCTGATGG | 59.778 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
2908 | 3733 | 5.398603 | AGTGTAGGACTTGAACTCTGATG | 57.601 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
2919 | 3744 | 4.697352 | GCATCAATGTCAAGTGTAGGACTT | 59.303 | 41.667 | 0.00 | 0.00 | 46.52 | 3.01 |
2920 | 3745 | 4.019860 | AGCATCAATGTCAAGTGTAGGACT | 60.020 | 41.667 | 0.00 | 0.00 | 35.94 | 3.85 |
2921 | 3746 | 4.256920 | AGCATCAATGTCAAGTGTAGGAC | 58.743 | 43.478 | 0.00 | 0.00 | 34.63 | 3.85 |
2922 | 3747 | 4.507710 | GAGCATCAATGTCAAGTGTAGGA | 58.492 | 43.478 | 0.00 | 0.00 | 33.17 | 2.94 |
2923 | 3748 | 3.308053 | CGAGCATCAATGTCAAGTGTAGG | 59.692 | 47.826 | 0.00 | 0.00 | 33.17 | 3.18 |
2924 | 3749 | 3.242220 | GCGAGCATCAATGTCAAGTGTAG | 60.242 | 47.826 | 0.00 | 0.00 | 33.17 | 2.74 |
2925 | 3750 | 2.672874 | GCGAGCATCAATGTCAAGTGTA | 59.327 | 45.455 | 0.00 | 0.00 | 33.17 | 2.90 |
2926 | 3751 | 1.466167 | GCGAGCATCAATGTCAAGTGT | 59.534 | 47.619 | 0.00 | 0.00 | 33.17 | 3.55 |
2927 | 3752 | 1.465777 | TGCGAGCATCAATGTCAAGTG | 59.534 | 47.619 | 0.00 | 0.00 | 33.17 | 3.16 |
2928 | 3753 | 1.812235 | TGCGAGCATCAATGTCAAGT | 58.188 | 45.000 | 0.00 | 0.00 | 33.17 | 3.16 |
2929 | 3754 | 3.416119 | AATGCGAGCATCAATGTCAAG | 57.584 | 42.857 | 11.26 | 0.00 | 35.31 | 3.02 |
2930 | 3755 | 3.853831 | AAATGCGAGCATCAATGTCAA | 57.146 | 38.095 | 11.26 | 0.00 | 35.31 | 3.18 |
2931 | 3756 | 3.427909 | GGAAAATGCGAGCATCAATGTCA | 60.428 | 43.478 | 11.26 | 0.00 | 35.31 | 3.58 |
2932 | 3757 | 3.111098 | GGAAAATGCGAGCATCAATGTC | 58.889 | 45.455 | 11.26 | 0.80 | 35.31 | 3.06 |
2933 | 3758 | 2.756760 | AGGAAAATGCGAGCATCAATGT | 59.243 | 40.909 | 11.26 | 0.00 | 35.31 | 2.71 |
2934 | 3759 | 3.113322 | CAGGAAAATGCGAGCATCAATG | 58.887 | 45.455 | 11.26 | 3.27 | 35.31 | 2.82 |
2935 | 3760 | 3.018856 | TCAGGAAAATGCGAGCATCAAT | 58.981 | 40.909 | 11.26 | 0.77 | 35.31 | 2.57 |
2936 | 3761 | 2.435422 | TCAGGAAAATGCGAGCATCAA | 58.565 | 42.857 | 11.26 | 0.00 | 35.31 | 2.57 |
2937 | 3762 | 2.112380 | TCAGGAAAATGCGAGCATCA | 57.888 | 45.000 | 11.26 | 0.00 | 35.31 | 3.07 |
2938 | 3763 | 3.705043 | ATTCAGGAAAATGCGAGCATC | 57.295 | 42.857 | 11.26 | 0.00 | 35.31 | 3.91 |
2939 | 3764 | 4.460948 | AAATTCAGGAAAATGCGAGCAT | 57.539 | 36.364 | 4.52 | 4.52 | 38.46 | 3.79 |
2940 | 3765 | 3.940209 | AAATTCAGGAAAATGCGAGCA | 57.060 | 38.095 | 0.00 | 0.00 | 0.00 | 4.26 |
2941 | 3766 | 6.531240 | TGAAATAAATTCAGGAAAATGCGAGC | 59.469 | 34.615 | 0.00 | 0.00 | 43.08 | 5.03 |
2954 | 3779 | 4.981806 | CGGAAGGGCTGAAATAAATTCA | 57.018 | 40.909 | 0.00 | 0.00 | 45.71 | 2.57 |
2970 | 3795 | 3.083600 | GAACGCACATCGCCGGAAG | 62.084 | 63.158 | 5.05 | 0.00 | 43.23 | 3.46 |
2971 | 3796 | 3.115892 | GAACGCACATCGCCGGAA | 61.116 | 61.111 | 5.05 | 0.00 | 43.23 | 4.30 |
2972 | 3797 | 3.867700 | TTGAACGCACATCGCCGGA | 62.868 | 57.895 | 5.05 | 0.00 | 43.23 | 5.14 |
2973 | 3798 | 2.749865 | ATTGAACGCACATCGCCGG | 61.750 | 57.895 | 0.00 | 0.00 | 43.23 | 6.13 |
2974 | 3799 | 1.580893 | CATTGAACGCACATCGCCG | 60.581 | 57.895 | 0.00 | 0.00 | 43.23 | 6.46 |
2975 | 3800 | 1.226379 | CCATTGAACGCACATCGCC | 60.226 | 57.895 | 0.00 | 0.00 | 43.23 | 5.54 |
2976 | 3801 | 1.226379 | CCCATTGAACGCACATCGC | 60.226 | 57.895 | 0.00 | 0.00 | 43.23 | 4.58 |
2977 | 3802 | 0.374758 | CTCCCATTGAACGCACATCG | 59.625 | 55.000 | 0.00 | 0.00 | 45.38 | 3.84 |
2978 | 3803 | 0.734889 | CCTCCCATTGAACGCACATC | 59.265 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2979 | 3804 | 0.327924 | TCCTCCCATTGAACGCACAT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2980 | 3805 | 0.321564 | CTCCTCCCATTGAACGCACA | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2981 | 3806 | 0.036388 | TCTCCTCCCATTGAACGCAC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2982 | 3807 | 0.036388 | GTCTCCTCCCATTGAACGCA | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 5.24 |
2983 | 3808 | 1.084370 | CGTCTCCTCCCATTGAACGC | 61.084 | 60.000 | 0.00 | 0.00 | 0.00 | 4.84 |
2984 | 3809 | 0.246635 | ACGTCTCCTCCCATTGAACG | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2985 | 3810 | 2.347731 | GAACGTCTCCTCCCATTGAAC | 58.652 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
2986 | 3811 | 1.278127 | GGAACGTCTCCTCCCATTGAA | 59.722 | 52.381 | 8.87 | 0.00 | 41.61 | 2.69 |
2987 | 3812 | 0.902531 | GGAACGTCTCCTCCCATTGA | 59.097 | 55.000 | 8.87 | 0.00 | 41.61 | 2.57 |
2988 | 3813 | 3.460648 | GGAACGTCTCCTCCCATTG | 57.539 | 57.895 | 8.87 | 0.00 | 41.61 | 2.82 |
2993 | 3818 | 1.035932 | TCGATGGGAACGTCTCCTCC | 61.036 | 60.000 | 13.94 | 6.16 | 44.68 | 4.30 |
2994 | 3819 | 0.100861 | GTCGATGGGAACGTCTCCTC | 59.899 | 60.000 | 13.94 | 6.42 | 44.68 | 3.71 |
2995 | 3820 | 0.323542 | AGTCGATGGGAACGTCTCCT | 60.324 | 55.000 | 13.94 | 0.00 | 44.68 | 3.69 |
2996 | 3821 | 1.386533 | TAGTCGATGGGAACGTCTCC | 58.613 | 55.000 | 7.90 | 7.90 | 44.51 | 3.71 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.