Multiple sequence alignment - TraesCS6D01G075400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G075400 chr6D 100.000 5427 0 0 1 5427 38883589 38889015 0.000000e+00 10022
1 TraesCS6D01G075400 chr6D 88.542 288 29 4 4855 5139 327022155 327021869 4.020000e-91 346
2 TraesCS6D01G075400 chr6D 89.933 149 15 0 1 149 389869052 389868904 5.550000e-45 193
3 TraesCS6D01G075400 chr6D 89.933 149 15 0 1 149 389871508 389871360 5.550000e-45 193
4 TraesCS6D01G075400 chr6D 89.262 149 16 0 1 149 389867819 389867671 2.580000e-43 187
5 TraesCS6D01G075400 chr6D 89.262 149 16 0 1 149 389870289 389870141 2.580000e-43 187
6 TraesCS6D01G075400 chr6B 91.756 4779 245 55 156 4855 90276887 90281595 0.000000e+00 6505
7 TraesCS6D01G075400 chr6B 85.828 755 59 23 987 1725 418139595 418140317 0.000000e+00 758
8 TraesCS6D01G075400 chr6B 92.188 128 9 1 5292 5419 90281657 90281783 4.320000e-41 180
9 TraesCS6D01G075400 chr6A 90.126 3251 222 52 151 3352 51405407 51408607 0.000000e+00 4133
10 TraesCS6D01G075400 chr6A 89.705 1253 94 21 3564 4791 51408736 51409978 0.000000e+00 1567
11 TraesCS6D01G075400 chr6A 91.852 135 10 1 5285 5419 51410147 51410280 2.580000e-43 187
12 TraesCS6D01G075400 chr5B 86.528 772 56 21 972 1727 711517473 711516734 0.000000e+00 806
13 TraesCS6D01G075400 chr7B 86.010 772 60 19 972 1727 20987939 20987200 0.000000e+00 784
14 TraesCS6D01G075400 chr4B 85.209 622 54 17 972 1590 233161527 233160941 6.010000e-169 604
15 TraesCS6D01G075400 chr1B 83.789 475 45 14 972 1436 128661500 128661952 6.500000e-114 422
16 TraesCS6D01G075400 chr1B 84.884 258 27 8 1481 1726 128661965 128662222 3.250000e-62 250
17 TraesCS6D01G075400 chr3B 88.552 297 29 5 4855 5148 603212374 603212668 6.690000e-94 355
18 TraesCS6D01G075400 chr3B 88.850 287 29 3 4855 5139 377115405 377115120 3.110000e-92 350
19 TraesCS6D01G075400 chr5D 88.699 292 29 4 4855 5143 451067143 451067433 2.400000e-93 353
20 TraesCS6D01G075400 chr3D 88.850 287 30 2 4855 5139 255424678 255424392 8.650000e-93 351
21 TraesCS6D01G075400 chr3A 88.435 294 28 5 4855 5146 742045917 742046206 3.110000e-92 350
22 TraesCS6D01G075400 chr3A 86.250 320 34 8 4828 5139 587584704 587585021 6.730000e-89 339
23 TraesCS6D01G075400 chr2B 88.235 289 32 2 4854 5140 207191655 207191367 1.450000e-90 344
24 TraesCS6D01G075400 chr2A 88.276 290 31 3 4855 5141 561298754 561299043 1.450000e-90 344
25 TraesCS6D01G075400 chr2A 86.538 156 19 2 1 156 673322082 673322235 2.600000e-38 171
26 TraesCS6D01G075400 chr4A 87.582 153 18 1 1 153 483958573 483958724 5.590000e-40 176
27 TraesCS6D01G075400 chr2D 88.000 150 17 1 1 149 622019169 622019318 5.590000e-40 176
28 TraesCS6D01G075400 chr1D 88.356 146 17 0 4 149 459867559 459867414 5.590000e-40 176
29 TraesCS6D01G075400 chr7D 87.919 149 17 1 1 149 7568286 7568433 2.010000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G075400 chr6D 38883589 38889015 5426 False 10022.000000 10022 100.0000 1 5427 1 chr6D.!!$F1 5426
1 TraesCS6D01G075400 chr6B 90276887 90281783 4896 False 3342.500000 6505 91.9720 156 5419 2 chr6B.!!$F2 5263
2 TraesCS6D01G075400 chr6B 418139595 418140317 722 False 758.000000 758 85.8280 987 1725 1 chr6B.!!$F1 738
3 TraesCS6D01G075400 chr6A 51405407 51410280 4873 False 1962.333333 4133 90.5610 151 5419 3 chr6A.!!$F1 5268
4 TraesCS6D01G075400 chr5B 711516734 711517473 739 True 806.000000 806 86.5280 972 1727 1 chr5B.!!$R1 755
5 TraesCS6D01G075400 chr7B 20987200 20987939 739 True 784.000000 784 86.0100 972 1727 1 chr7B.!!$R1 755
6 TraesCS6D01G075400 chr4B 233160941 233161527 586 True 604.000000 604 85.2090 972 1590 1 chr4B.!!$R1 618
7 TraesCS6D01G075400 chr1B 128661500 128662222 722 False 336.000000 422 84.3365 972 1726 2 chr1B.!!$F1 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.111832 AGTCGTCACTAGGTGGTCCA 59.888 55.000 0.00 0.00 33.87 4.02 F
70 71 0.178861 AGGTGGTCCAAGGATCTGGT 60.179 55.000 0.00 0.00 37.74 4.00 F
426 431 0.529119 AGACCGAACGTGCGTTTCTT 60.529 50.000 16.18 0.00 38.60 2.52 F
2080 2181 0.618458 TATGGAAACTGGGAAGCGCT 59.382 50.000 2.64 2.64 0.00 5.92 F
2452 2557 2.838736 AGTTGCATCGTATCCCATCAC 58.161 47.619 0.00 0.00 0.00 3.06 F
2980 3090 0.177141 ACACGTGCAAGTACCTGTGT 59.823 50.000 17.22 1.04 35.86 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 1992 0.245539 TTCATCGTCCCGGTTGTCTC 59.754 55.00 0.00 0.00 0.00 3.36 R
2110 2211 5.692115 TGATGAGCATTAGTAAGTTCCCA 57.308 39.13 0.00 0.00 0.00 4.37 R
2444 2549 0.396435 AACTGAGTTGCGTGATGGGA 59.604 50.00 0.00 0.00 0.00 4.37 R
2961 3071 0.177141 ACACAGGTACTTGCACGTGT 59.823 50.00 18.38 0.14 45.65 4.49 R
4339 4478 0.456312 CTTGGTCGAGAGTACACGCC 60.456 60.00 0.00 4.97 0.00 5.68 R
4868 5028 1.221466 ATATCCCGATGCAACGCACG 61.221 55.00 11.32 0.54 43.04 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.191485 CGATGACGACAACGCGCC 62.191 66.667 5.73 0.00 43.96 6.53
19 20 2.809601 GATGACGACAACGCGCCT 60.810 61.111 5.73 0.00 43.96 5.52
20 21 2.357034 ATGACGACAACGCGCCTT 60.357 55.556 5.73 0.00 43.96 4.35
21 22 2.279937 GATGACGACAACGCGCCTTC 62.280 60.000 5.73 0.00 43.96 3.46
22 23 4.117372 GACGACAACGCGCCTTCG 62.117 66.667 18.72 18.72 43.96 3.79
23 24 4.634133 ACGACAACGCGCCTTCGA 62.634 61.111 24.86 0.00 43.96 3.71
24 25 4.117372 CGACAACGCGCCTTCGAC 62.117 66.667 16.23 0.00 38.10 4.20
25 26 2.733593 GACAACGCGCCTTCGACT 60.734 61.111 5.73 0.00 38.10 4.18
26 27 2.717809 GACAACGCGCCTTCGACTC 61.718 63.158 5.73 0.00 38.10 3.36
27 28 3.827784 CAACGCGCCTTCGACTCG 61.828 66.667 5.73 0.00 38.10 4.18
31 32 3.112709 GCGCCTTCGACTCGCTTT 61.113 61.111 15.17 0.00 44.79 3.51
32 33 1.804326 GCGCCTTCGACTCGCTTTA 60.804 57.895 15.17 0.00 44.79 1.85
33 34 1.743855 GCGCCTTCGACTCGCTTTAG 61.744 60.000 15.17 0.00 44.79 1.85
34 35 0.456312 CGCCTTCGACTCGCTTTAGT 60.456 55.000 0.00 0.00 38.10 2.24
35 36 0.992802 GCCTTCGACTCGCTTTAGTG 59.007 55.000 0.00 0.00 0.00 2.74
36 37 0.992802 CCTTCGACTCGCTTTAGTGC 59.007 55.000 0.00 0.00 0.00 4.40
37 38 1.402984 CCTTCGACTCGCTTTAGTGCT 60.403 52.381 0.00 0.00 0.00 4.40
38 39 2.329379 CTTCGACTCGCTTTAGTGCTT 58.671 47.619 0.00 0.00 0.00 3.91
39 40 1.698165 TCGACTCGCTTTAGTGCTTG 58.302 50.000 0.00 0.00 0.00 4.01
40 41 1.000607 TCGACTCGCTTTAGTGCTTGT 60.001 47.619 0.00 0.00 0.00 3.16
41 42 2.227149 TCGACTCGCTTTAGTGCTTGTA 59.773 45.455 0.00 0.00 0.00 2.41
42 43 2.594654 CGACTCGCTTTAGTGCTTGTAG 59.405 50.000 0.00 0.00 0.00 2.74
43 44 3.576648 GACTCGCTTTAGTGCTTGTAGT 58.423 45.455 0.00 0.00 0.00 2.73
44 45 3.576648 ACTCGCTTTAGTGCTTGTAGTC 58.423 45.455 0.00 0.00 0.00 2.59
45 46 2.592194 TCGCTTTAGTGCTTGTAGTCG 58.408 47.619 0.00 0.00 0.00 4.18
46 47 2.030540 TCGCTTTAGTGCTTGTAGTCGT 60.031 45.455 0.00 0.00 0.00 4.34
47 48 2.341760 CGCTTTAGTGCTTGTAGTCGTC 59.658 50.000 0.00 0.00 0.00 4.20
48 49 3.314553 GCTTTAGTGCTTGTAGTCGTCA 58.685 45.455 0.00 0.00 0.00 4.35
49 50 3.121445 GCTTTAGTGCTTGTAGTCGTCAC 59.879 47.826 0.00 0.00 0.00 3.67
50 51 4.547532 CTTTAGTGCTTGTAGTCGTCACT 58.452 43.478 0.00 0.00 40.60 3.41
51 52 5.694231 TTTAGTGCTTGTAGTCGTCACTA 57.306 39.130 0.00 0.00 38.71 2.74
52 53 3.833545 AGTGCTTGTAGTCGTCACTAG 57.166 47.619 0.00 0.00 35.67 2.57
53 54 2.488545 AGTGCTTGTAGTCGTCACTAGG 59.511 50.000 0.00 0.00 35.67 3.02
54 55 2.228343 GTGCTTGTAGTCGTCACTAGGT 59.772 50.000 0.00 0.00 35.67 3.08
55 56 2.228103 TGCTTGTAGTCGTCACTAGGTG 59.772 50.000 0.00 0.00 35.67 4.00
56 57 2.415625 GCTTGTAGTCGTCACTAGGTGG 60.416 54.545 0.00 0.00 35.67 4.61
57 58 2.574006 TGTAGTCGTCACTAGGTGGT 57.426 50.000 0.00 0.00 35.67 4.16
58 59 2.430465 TGTAGTCGTCACTAGGTGGTC 58.570 52.381 0.00 0.00 35.67 4.02
59 60 1.742268 GTAGTCGTCACTAGGTGGTCC 59.258 57.143 0.00 0.00 35.67 4.46
60 61 0.111832 AGTCGTCACTAGGTGGTCCA 59.888 55.000 0.00 0.00 33.87 4.02
61 62 0.963962 GTCGTCACTAGGTGGTCCAA 59.036 55.000 0.00 0.00 33.87 3.53
62 63 1.067776 GTCGTCACTAGGTGGTCCAAG 60.068 57.143 0.00 0.00 33.87 3.61
63 64 0.246635 CGTCACTAGGTGGTCCAAGG 59.753 60.000 0.00 0.00 33.87 3.61
64 65 1.640917 GTCACTAGGTGGTCCAAGGA 58.359 55.000 0.00 0.00 33.87 3.36
65 66 2.188817 GTCACTAGGTGGTCCAAGGAT 58.811 52.381 0.00 0.00 33.87 3.24
66 67 2.168728 GTCACTAGGTGGTCCAAGGATC 59.831 54.545 0.00 0.00 33.87 3.36
67 68 2.044492 TCACTAGGTGGTCCAAGGATCT 59.956 50.000 0.00 0.00 33.87 2.75
68 69 2.169352 CACTAGGTGGTCCAAGGATCTG 59.831 54.545 0.00 0.00 35.89 2.90
69 70 1.765314 CTAGGTGGTCCAAGGATCTGG 59.235 57.143 0.00 0.00 37.87 3.86
70 71 0.178861 AGGTGGTCCAAGGATCTGGT 60.179 55.000 0.00 0.00 37.74 4.00
71 72 0.698818 GGTGGTCCAAGGATCTGGTT 59.301 55.000 0.00 0.00 37.74 3.67
72 73 1.614317 GGTGGTCCAAGGATCTGGTTG 60.614 57.143 0.00 0.00 37.74 3.77
73 74 1.073923 GTGGTCCAAGGATCTGGTTGT 59.926 52.381 0.00 0.00 37.74 3.32
74 75 2.304761 GTGGTCCAAGGATCTGGTTGTA 59.695 50.000 0.00 0.00 37.74 2.41
75 76 2.983192 TGGTCCAAGGATCTGGTTGTAA 59.017 45.455 0.43 0.00 37.74 2.41
76 77 3.591527 TGGTCCAAGGATCTGGTTGTAAT 59.408 43.478 0.43 0.00 37.74 1.89
77 78 4.044065 TGGTCCAAGGATCTGGTTGTAATT 59.956 41.667 0.43 0.00 37.74 1.40
78 79 5.016831 GGTCCAAGGATCTGGTTGTAATTT 58.983 41.667 1.22 0.00 37.74 1.82
79 80 5.480422 GGTCCAAGGATCTGGTTGTAATTTT 59.520 40.000 1.22 0.00 37.74 1.82
80 81 6.014584 GGTCCAAGGATCTGGTTGTAATTTTT 60.015 38.462 1.22 0.00 37.74 1.94
81 82 7.177744 GGTCCAAGGATCTGGTTGTAATTTTTA 59.822 37.037 1.22 0.00 37.74 1.52
82 83 8.749354 GTCCAAGGATCTGGTTGTAATTTTTAT 58.251 33.333 1.22 0.00 37.74 1.40
83 84 9.320295 TCCAAGGATCTGGTTGTAATTTTTATT 57.680 29.630 1.22 0.00 37.74 1.40
108 109 7.956420 ATTTCTAATGTTCGTTGTACTGTCA 57.044 32.000 0.00 0.00 0.00 3.58
109 110 7.956420 TTTCTAATGTTCGTTGTACTGTCAT 57.044 32.000 0.00 0.00 0.00 3.06
110 111 6.944557 TCTAATGTTCGTTGTACTGTCATG 57.055 37.500 0.00 0.00 0.00 3.07
111 112 6.683715 TCTAATGTTCGTTGTACTGTCATGA 58.316 36.000 0.00 0.00 0.00 3.07
112 113 7.320399 TCTAATGTTCGTTGTACTGTCATGAT 58.680 34.615 0.00 0.00 0.00 2.45
113 114 6.801539 AATGTTCGTTGTACTGTCATGATT 57.198 33.333 0.00 0.00 0.00 2.57
114 115 5.590104 TGTTCGTTGTACTGTCATGATTG 57.410 39.130 0.00 0.00 0.00 2.67
115 116 5.293560 TGTTCGTTGTACTGTCATGATTGA 58.706 37.500 0.00 0.00 0.00 2.57
116 117 5.755861 TGTTCGTTGTACTGTCATGATTGAA 59.244 36.000 0.00 0.00 32.48 2.69
117 118 6.073819 TGTTCGTTGTACTGTCATGATTGAAG 60.074 38.462 0.00 0.00 32.48 3.02
118 119 5.778862 TCGTTGTACTGTCATGATTGAAGA 58.221 37.500 0.00 0.00 32.48 2.87
119 120 6.398095 TCGTTGTACTGTCATGATTGAAGAT 58.602 36.000 0.00 0.00 32.48 2.40
120 121 6.311200 TCGTTGTACTGTCATGATTGAAGATG 59.689 38.462 0.00 0.00 32.48 2.90
121 122 6.311200 CGTTGTACTGTCATGATTGAAGATGA 59.689 38.462 0.00 0.00 32.48 2.92
122 123 7.148590 CGTTGTACTGTCATGATTGAAGATGAA 60.149 37.037 0.00 0.00 32.48 2.57
123 124 8.671921 GTTGTACTGTCATGATTGAAGATGAAT 58.328 33.333 0.00 0.00 32.48 2.57
124 125 9.889128 TTGTACTGTCATGATTGAAGATGAATA 57.111 29.630 0.00 0.00 32.48 1.75
125 126 9.538508 TGTACTGTCATGATTGAAGATGAATAG 57.461 33.333 0.00 0.00 32.48 1.73
126 127 9.755804 GTACTGTCATGATTGAAGATGAATAGA 57.244 33.333 0.00 0.00 32.48 1.98
128 129 9.491675 ACTGTCATGATTGAAGATGAATAGATC 57.508 33.333 0.00 0.00 32.48 2.75
129 130 9.490379 CTGTCATGATTGAAGATGAATAGATCA 57.510 33.333 0.00 0.00 36.59 2.92
130 131 9.841295 TGTCATGATTGAAGATGAATAGATCAA 57.159 29.630 0.00 0.00 36.05 2.57
162 163 7.394016 TCTCACATAAAATGAGTGTGGTGTAT 58.606 34.615 5.07 0.00 43.47 2.29
190 191 4.935352 TCATGGACAAAGTGGAAAAAGG 57.065 40.909 0.00 0.00 0.00 3.11
195 196 2.096248 ACAAAGTGGAAAAAGGCGACA 58.904 42.857 0.00 0.00 0.00 4.35
206 208 5.508320 GGAAAAAGGCGACAAATGGACTTTA 60.508 40.000 0.00 0.00 0.00 1.85
207 209 5.523438 AAAAGGCGACAAATGGACTTTAA 57.477 34.783 0.00 0.00 0.00 1.52
208 210 5.722021 AAAGGCGACAAATGGACTTTAAT 57.278 34.783 0.00 0.00 0.00 1.40
210 212 5.813080 AGGCGACAAATGGACTTTAATAC 57.187 39.130 0.00 0.00 0.00 1.89
217 219 9.550811 CGACAAATGGACTTTAATACTTTTACC 57.449 33.333 0.00 0.00 0.00 2.85
220 222 9.550811 CAAATGGACTTTAATACTTTTACCGAC 57.449 33.333 0.00 0.00 0.00 4.79
233 235 6.956047 ACTTTTACCGACTCAAAATCAACTC 58.044 36.000 0.00 0.00 0.00 3.01
290 292 8.800370 TTCCACATTTCTTTGCAGTATATGTA 57.200 30.769 0.00 0.00 0.00 2.29
303 305 8.753497 TGCAGTATATGTACCATAGATCTAGG 57.247 38.462 8.70 8.06 0.00 3.02
321 323 3.065575 GTCATCACCATCGGACCAC 57.934 57.895 0.00 0.00 0.00 4.16
323 325 1.066143 GTCATCACCATCGGACCACTT 60.066 52.381 0.00 0.00 0.00 3.16
329 331 0.796312 CCATCGGACCACTTGTTTCG 59.204 55.000 0.00 0.00 0.00 3.46
417 422 6.647895 ACTTTGATTGTTATAAGACCGAACGT 59.352 34.615 0.00 0.00 0.00 3.99
418 423 6.397831 TTGATTGTTATAAGACCGAACGTG 57.602 37.500 0.00 0.00 0.00 4.49
419 424 4.327898 TGATTGTTATAAGACCGAACGTGC 59.672 41.667 0.00 0.00 0.00 5.34
420 425 2.252747 TGTTATAAGACCGAACGTGCG 58.747 47.619 9.60 9.60 0.00 5.34
423 428 1.787012 ATAAGACCGAACGTGCGTTT 58.213 45.000 16.18 8.84 38.60 3.60
424 429 1.130955 TAAGACCGAACGTGCGTTTC 58.869 50.000 16.18 10.86 38.60 2.78
426 431 0.529119 AGACCGAACGTGCGTTTCTT 60.529 50.000 16.18 0.00 38.60 2.52
427 432 1.130955 GACCGAACGTGCGTTTCTTA 58.869 50.000 16.18 0.00 38.60 2.10
428 433 1.123756 GACCGAACGTGCGTTTCTTAG 59.876 52.381 16.18 0.00 38.60 2.18
429 434 1.134226 CCGAACGTGCGTTTCTTAGT 58.866 50.000 16.18 0.00 38.60 2.24
430 435 1.123756 CCGAACGTGCGTTTCTTAGTC 59.876 52.381 16.18 0.00 38.60 2.59
434 439 4.470462 GAACGTGCGTTTCTTAGTCTCTA 58.530 43.478 11.35 0.00 38.60 2.43
475 482 4.018779 CCCTGGACCATCTTTTGTACCTTA 60.019 45.833 0.00 0.00 0.00 2.69
489 496 7.883391 TTTGTACCTTAAAGGAACAACATGA 57.117 32.000 0.00 0.00 37.67 3.07
534 541 5.139727 TGAAAATGACTCCTGAACCAACAT 58.860 37.500 0.00 0.00 0.00 2.71
545 553 4.229096 CTGAACCAACATTGAATTGACCG 58.771 43.478 0.00 0.00 0.00 4.79
549 557 3.888930 ACCAACATTGAATTGACCGAAGT 59.111 39.130 0.00 0.00 0.00 3.01
551 559 5.163457 ACCAACATTGAATTGACCGAAGTTT 60.163 36.000 0.00 0.00 0.00 2.66
561 569 9.661563 TGAATTGACCGAAGTTTATACTATTGT 57.338 29.630 0.00 0.00 33.17 2.71
595 615 2.004583 TCTTTTGTACATCGCCTCGG 57.995 50.000 0.00 0.00 0.00 4.63
598 618 1.179152 TTTGTACATCGCCTCGGAGA 58.821 50.000 6.58 0.00 0.00 3.71
602 622 1.945394 GTACATCGCCTCGGAGACTTA 59.055 52.381 6.58 0.00 0.00 2.24
606 626 3.118738 ACATCGCCTCGGAGACTTATTTT 60.119 43.478 6.58 0.00 0.00 1.82
613 633 6.091713 CGCCTCGGAGACTTATTTTCTTTTTA 59.908 38.462 6.58 0.00 0.00 1.52
614 634 7.242079 GCCTCGGAGACTTATTTTCTTTTTAC 58.758 38.462 6.58 0.00 0.00 2.01
616 636 9.649167 CCTCGGAGACTTATTTTCTTTTTACTA 57.351 33.333 6.58 0.00 0.00 1.82
666 691 2.162681 CGTGGAGGCCAAAAAGATCTT 58.837 47.619 5.01 0.88 34.18 2.40
731 756 4.096382 TCTGCAACTGAAAAAGAGTTCCAC 59.904 41.667 0.00 0.00 31.05 4.02
1371 1454 0.954452 CCTGGTTCTTCTTGGTGTGC 59.046 55.000 0.00 0.00 0.00 4.57
1426 1509 1.937191 AGTGGGGATTTGGCGAAATT 58.063 45.000 8.17 0.00 31.58 1.82
1499 1585 1.742768 GGAGATGGCGAACGAGGAT 59.257 57.895 0.00 0.00 0.00 3.24
1628 1721 3.086600 CAGGCCTGGAGGAGGGAC 61.087 72.222 26.14 0.00 43.07 4.46
1797 1898 2.978156 TCTTTGAGAATGCAACCCCT 57.022 45.000 0.00 0.00 0.00 4.79
1891 1992 1.080230 CAGACGCTGGAGGAGTGTG 60.080 63.158 0.00 0.00 45.82 3.82
2080 2181 0.618458 TATGGAAACTGGGAAGCGCT 59.382 50.000 2.64 2.64 0.00 5.92
2110 2211 7.706100 TTGTGTTACAAAGGTAAGGAAACTT 57.294 32.000 0.00 0.00 44.01 2.66
2111 2212 7.540299 TTGTGTTACAAAGGTAAGGAAACTTG 58.460 34.615 0.00 0.00 42.59 3.16
2126 2227 5.710567 AGGAAACTTGGGAACTTACTAATGC 59.289 40.000 0.00 0.00 37.44 3.56
2153 2254 7.997223 TCATCAATGATGCTTCCTTCTATTCTT 59.003 33.333 17.81 0.00 39.63 2.52
2154 2255 7.798596 TCAATGATGCTTCCTTCTATTCTTC 57.201 36.000 0.00 0.00 0.00 2.87
2203 2304 5.250982 TGCTTGATCCTTAGCATATGATGG 58.749 41.667 6.97 0.00 42.12 3.51
2218 2319 6.016860 GCATATGATGGTGCTGACAGAAATTA 60.017 38.462 6.97 0.00 38.30 1.40
2368 2472 4.351111 AGGGACTAGTGTGAAAAATCCTGT 59.649 41.667 0.00 0.00 36.02 4.00
2444 2549 5.826586 TGTTGACAAAAAGTTGCATCGTAT 58.173 33.333 0.00 0.00 38.39 3.06
2446 2551 5.041951 TGACAAAAAGTTGCATCGTATCC 57.958 39.130 0.00 0.00 38.39 2.59
2452 2557 2.838736 AGTTGCATCGTATCCCATCAC 58.161 47.619 0.00 0.00 0.00 3.06
2475 2580 3.944015 GCAACTCAGTTCAGAATAGGCAT 59.056 43.478 0.00 0.00 0.00 4.40
2476 2581 4.397417 GCAACTCAGTTCAGAATAGGCATT 59.603 41.667 0.00 0.00 0.00 3.56
2540 2648 6.929049 CGCTTCTGTGGATACCTTATAAATGA 59.071 38.462 0.00 0.00 0.00 2.57
2585 2693 6.809630 AACTTGGTAAGATCAGCTTTTCTC 57.190 37.500 0.00 0.00 38.05 2.87
2593 2701 4.002316 AGATCAGCTTTTCTCTGTCAAGC 58.998 43.478 0.00 0.00 42.81 4.01
2689 2797 5.114780 CCAGGACAGACTTCTAACATCATG 58.885 45.833 0.00 0.00 0.00 3.07
2945 3055 5.045651 TCCATGCTGTCTTCCTCATCTTAAA 60.046 40.000 0.00 0.00 0.00 1.52
2980 3090 0.177141 ACACGTGCAAGTACCTGTGT 59.823 50.000 17.22 1.04 35.86 3.72
2997 3107 4.442706 CTGTGTGTTTGAACTCAGTACCT 58.557 43.478 0.00 0.00 37.06 3.08
3005 3117 1.968493 GAACTCAGTACCTGGACCACA 59.032 52.381 0.00 0.00 31.51 4.17
3007 3119 2.621070 ACTCAGTACCTGGACCACATT 58.379 47.619 0.00 0.00 31.51 2.71
3011 3123 3.007940 TCAGTACCTGGACCACATTTCAG 59.992 47.826 0.00 0.00 31.51 3.02
3012 3124 2.084546 GTACCTGGACCACATTTCAGC 58.915 52.381 0.00 0.00 0.00 4.26
3014 3126 1.171308 CCTGGACCACATTTCAGCAG 58.829 55.000 0.00 0.00 0.00 4.24
3031 3143 5.324409 TCAGCAGTAAATCCATGTTTCCTT 58.676 37.500 0.00 0.00 0.00 3.36
3041 3153 4.285863 TCCATGTTTCCTTGTCTTGGTTT 58.714 39.130 0.00 0.00 0.00 3.27
3050 3162 4.141274 TCCTTGTCTTGGTTTCATTCCTGA 60.141 41.667 0.00 0.00 0.00 3.86
3405 3518 7.595488 AGGAATGGTTTAGATTTGGTGGATAT 58.405 34.615 0.00 0.00 0.00 1.63
3411 3524 7.556275 TGGTTTAGATTTGGTGGATATCAAGTC 59.444 37.037 4.83 0.00 34.78 3.01
3412 3525 7.013369 GGTTTAGATTTGGTGGATATCAAGTCC 59.987 40.741 4.83 1.91 35.04 3.85
3423 3538 5.119694 GGATATCAAGTCCCTCAACAGTTC 58.880 45.833 4.83 0.00 0.00 3.01
3529 3647 3.983344 GCATGACTTTAAAACTGGTGCAG 59.017 43.478 0.00 0.00 37.52 4.41
3537 3655 6.376018 ACTTTAAAACTGGTGCAGAACAGTAA 59.624 34.615 16.27 7.19 46.49 2.24
3548 3666 7.230510 TGGTGCAGAACAGTAAAGTGAAATAAT 59.769 33.333 0.00 0.00 0.00 1.28
3619 3737 8.454106 GCATGAAGTGAATTACTAGAACATGTT 58.546 33.333 11.78 11.78 39.18 2.71
3636 3754 6.122850 ACATGTTGATGTGCACATGTATAC 57.877 37.500 35.92 24.42 42.24 1.47
3637 3755 5.647225 ACATGTTGATGTGCACATGTATACA 59.353 36.000 35.92 28.28 42.24 2.29
3639 3757 6.180771 TGTTGATGTGCACATGTATACAAG 57.819 37.500 35.92 8.20 36.57 3.16
3647 3779 6.035542 TGTGCACATGTATACAAGTTACATCG 59.964 38.462 17.42 6.75 38.02 3.84
3686 3820 3.270027 TCTGTCTCCGTTTTATGCATGG 58.730 45.455 10.16 0.89 0.00 3.66
3850 3984 8.079211 ACAGAGCTATTTGAATAGTGAGGTTA 57.921 34.615 11.29 0.00 40.37 2.85
3957 4093 8.637099 CCTCTTTCTTTCTTCCATTCTTTCTTT 58.363 33.333 0.00 0.00 0.00 2.52
4129 4265 3.074390 TGTGGGGATGTGTGAAGAGAATT 59.926 43.478 0.00 0.00 0.00 2.17
4324 4463 1.371558 GAGGTTCCTTGTGCTCGGT 59.628 57.895 0.00 0.00 0.00 4.69
4475 4614 0.449388 GCCAATTTGCGTGGAGAGAG 59.551 55.000 0.00 0.00 38.54 3.20
4815 4975 4.142204 TGGTACAAAATGCATACATGCCAG 60.142 41.667 11.50 0.47 45.38 4.85
4825 4985 3.860754 GCATACATGCCAGCGTAGATGTA 60.861 47.826 2.65 0.00 45.74 2.29
4826 4986 2.225068 ACATGCCAGCGTAGATGTAC 57.775 50.000 0.00 0.00 45.74 2.90
4827 4987 1.480545 ACATGCCAGCGTAGATGTACA 59.519 47.619 0.00 0.00 45.74 2.90
4829 4989 2.753055 TGCCAGCGTAGATGTACAAA 57.247 45.000 0.00 0.00 45.74 2.83
4831 4991 3.605634 TGCCAGCGTAGATGTACAAAAT 58.394 40.909 0.00 0.00 45.74 1.82
4834 4994 5.820423 TGCCAGCGTAGATGTACAAAATAAT 59.180 36.000 0.00 0.00 45.74 1.28
4867 5027 6.985188 TCATTATTTGACTAGAACAGTGCC 57.015 37.500 0.00 0.00 37.72 5.01
4868 5028 5.880332 TCATTATTTGACTAGAACAGTGCCC 59.120 40.000 0.00 0.00 37.72 5.36
4869 5029 2.163818 TTTGACTAGAACAGTGCCCG 57.836 50.000 0.00 0.00 37.72 6.13
4870 5030 1.045407 TTGACTAGAACAGTGCCCGT 58.955 50.000 0.00 0.00 37.72 5.28
4871 5031 0.317160 TGACTAGAACAGTGCCCGTG 59.683 55.000 0.00 0.00 37.72 4.94
4872 5032 1.004918 ACTAGAACAGTGCCCGTGC 60.005 57.895 0.00 0.00 35.62 5.34
4873 5033 2.048597 TAGAACAGTGCCCGTGCG 60.049 61.111 0.00 0.00 41.78 5.34
4874 5034 2.765250 CTAGAACAGTGCCCGTGCGT 62.765 60.000 0.00 0.00 41.78 5.24
4875 5035 2.372040 TAGAACAGTGCCCGTGCGTT 62.372 55.000 0.00 0.00 41.78 4.84
4876 5036 3.521308 GAACAGTGCCCGTGCGTTG 62.521 63.158 0.00 0.00 41.78 4.10
4880 5040 4.759096 GTGCCCGTGCGTTGCATC 62.759 66.667 8.74 0.00 41.91 3.91
4885 5045 3.195002 CGTGCGTTGCATCGGGAT 61.195 61.111 18.16 0.00 41.91 3.85
4886 5046 1.880796 CGTGCGTTGCATCGGGATA 60.881 57.895 18.16 0.00 41.91 2.59
4887 5047 1.221466 CGTGCGTTGCATCGGGATAT 61.221 55.000 18.16 0.00 41.91 1.63
4888 5048 1.790755 GTGCGTTGCATCGGGATATA 58.209 50.000 18.16 0.00 41.91 0.86
4889 5049 2.139917 GTGCGTTGCATCGGGATATAA 58.860 47.619 18.16 0.00 41.91 0.98
4890 5050 2.546368 GTGCGTTGCATCGGGATATAAA 59.454 45.455 18.16 0.00 41.91 1.40
4891 5051 3.188460 GTGCGTTGCATCGGGATATAAAT 59.812 43.478 18.16 0.00 41.91 1.40
4892 5052 4.390603 GTGCGTTGCATCGGGATATAAATA 59.609 41.667 18.16 0.00 41.91 1.40
4893 5053 5.064707 GTGCGTTGCATCGGGATATAAATAT 59.935 40.000 18.16 0.00 41.91 1.28
4894 5054 5.645929 TGCGTTGCATCGGGATATAAATATT 59.354 36.000 18.16 0.00 31.71 1.28
4895 5055 6.183360 TGCGTTGCATCGGGATATAAATATTC 60.183 38.462 18.16 0.00 31.71 1.75
4896 5056 6.037172 GCGTTGCATCGGGATATAAATATTCT 59.963 38.462 18.16 0.00 0.00 2.40
4897 5057 7.223971 GCGTTGCATCGGGATATAAATATTCTA 59.776 37.037 18.16 0.00 0.00 2.10
4898 5058 8.755941 CGTTGCATCGGGATATAAATATTCTAG 58.244 37.037 9.33 0.00 0.00 2.43
4899 5059 9.601217 GTTGCATCGGGATATAAATATTCTAGT 57.399 33.333 0.00 0.00 0.00 2.57
4919 5079 9.595823 TTCTAGTATGTTAGGTTGTGATTTAGC 57.404 33.333 0.00 0.00 0.00 3.09
4920 5080 8.978472 TCTAGTATGTTAGGTTGTGATTTAGCT 58.022 33.333 0.00 0.00 0.00 3.32
4922 5082 8.943909 AGTATGTTAGGTTGTGATTTAGCTAC 57.056 34.615 0.00 0.00 0.00 3.58
4923 5083 8.537016 AGTATGTTAGGTTGTGATTTAGCTACA 58.463 33.333 0.00 0.00 0.00 2.74
4924 5084 9.158233 GTATGTTAGGTTGTGATTTAGCTACAA 57.842 33.333 0.00 0.00 32.39 2.41
4925 5085 8.630054 ATGTTAGGTTGTGATTTAGCTACAAA 57.370 30.769 0.65 0.00 36.23 2.83
4926 5086 8.630054 TGTTAGGTTGTGATTTAGCTACAAAT 57.370 30.769 0.65 0.00 36.23 2.32
4927 5087 9.727859 TGTTAGGTTGTGATTTAGCTACAAATA 57.272 29.630 0.65 0.00 36.23 1.40
4935 5095 9.877137 TGTGATTTAGCTACAAATAATAATGCG 57.123 29.630 0.00 0.00 0.00 4.73
4941 5101 9.877137 TTAGCTACAAATAATAATGCGATTGTG 57.123 29.630 0.00 0.00 33.48 3.33
4942 5102 7.930217 AGCTACAAATAATAATGCGATTGTGT 58.070 30.769 0.00 0.00 33.48 3.72
4943 5103 9.051679 AGCTACAAATAATAATGCGATTGTGTA 57.948 29.630 0.00 0.00 33.48 2.90
4944 5104 9.658475 GCTACAAATAATAATGCGATTGTGTAA 57.342 29.630 0.00 0.00 33.48 2.41
5083 5243 8.657074 TTATATACATGAAAGGTTGGACGAAG 57.343 34.615 0.00 0.00 28.09 3.79
5084 5244 2.504367 ACATGAAAGGTTGGACGAAGG 58.496 47.619 0.00 0.00 0.00 3.46
5085 5245 2.105821 ACATGAAAGGTTGGACGAAGGA 59.894 45.455 0.00 0.00 0.00 3.36
5086 5246 3.244911 ACATGAAAGGTTGGACGAAGGAT 60.245 43.478 0.00 0.00 0.00 3.24
5087 5247 2.778299 TGAAAGGTTGGACGAAGGATG 58.222 47.619 0.00 0.00 0.00 3.51
5088 5248 2.370519 TGAAAGGTTGGACGAAGGATGA 59.629 45.455 0.00 0.00 0.00 2.92
5089 5249 3.009033 TGAAAGGTTGGACGAAGGATGAT 59.991 43.478 0.00 0.00 0.00 2.45
5090 5250 2.698855 AGGTTGGACGAAGGATGATG 57.301 50.000 0.00 0.00 0.00 3.07
5091 5251 1.210478 AGGTTGGACGAAGGATGATGG 59.790 52.381 0.00 0.00 0.00 3.51
5092 5252 1.668419 GTTGGACGAAGGATGATGGG 58.332 55.000 0.00 0.00 0.00 4.00
5093 5253 1.209504 GTTGGACGAAGGATGATGGGA 59.790 52.381 0.00 0.00 0.00 4.37
5094 5254 1.578897 TGGACGAAGGATGATGGGAA 58.421 50.000 0.00 0.00 0.00 3.97
5095 5255 1.486310 TGGACGAAGGATGATGGGAAG 59.514 52.381 0.00 0.00 0.00 3.46
5096 5256 1.762957 GGACGAAGGATGATGGGAAGA 59.237 52.381 0.00 0.00 0.00 2.87
5097 5257 2.170607 GGACGAAGGATGATGGGAAGAA 59.829 50.000 0.00 0.00 0.00 2.52
5098 5258 3.370527 GGACGAAGGATGATGGGAAGAAA 60.371 47.826 0.00 0.00 0.00 2.52
5099 5259 3.873952 GACGAAGGATGATGGGAAGAAAG 59.126 47.826 0.00 0.00 0.00 2.62
5100 5260 3.209410 CGAAGGATGATGGGAAGAAAGG 58.791 50.000 0.00 0.00 0.00 3.11
5101 5261 3.370953 CGAAGGATGATGGGAAGAAAGGT 60.371 47.826 0.00 0.00 0.00 3.50
5102 5262 3.659183 AGGATGATGGGAAGAAAGGTG 57.341 47.619 0.00 0.00 0.00 4.00
5103 5263 3.192944 AGGATGATGGGAAGAAAGGTGA 58.807 45.455 0.00 0.00 0.00 4.02
5104 5264 3.593328 AGGATGATGGGAAGAAAGGTGAA 59.407 43.478 0.00 0.00 0.00 3.18
5105 5265 4.044571 AGGATGATGGGAAGAAAGGTGAAA 59.955 41.667 0.00 0.00 0.00 2.69
5106 5266 4.958581 GGATGATGGGAAGAAAGGTGAAAT 59.041 41.667 0.00 0.00 0.00 2.17
5107 5267 5.163478 GGATGATGGGAAGAAAGGTGAAATG 60.163 44.000 0.00 0.00 0.00 2.32
5108 5268 4.996793 TGATGGGAAGAAAGGTGAAATGA 58.003 39.130 0.00 0.00 0.00 2.57
5109 5269 5.392995 TGATGGGAAGAAAGGTGAAATGAA 58.607 37.500 0.00 0.00 0.00 2.57
5110 5270 5.837979 TGATGGGAAGAAAGGTGAAATGAAA 59.162 36.000 0.00 0.00 0.00 2.69
5111 5271 6.326064 TGATGGGAAGAAAGGTGAAATGAAAA 59.674 34.615 0.00 0.00 0.00 2.29
5112 5272 5.912892 TGGGAAGAAAGGTGAAATGAAAAC 58.087 37.500 0.00 0.00 0.00 2.43
5113 5273 5.163353 TGGGAAGAAAGGTGAAATGAAAACC 60.163 40.000 0.00 0.00 0.00 3.27
5114 5274 5.070446 GGGAAGAAAGGTGAAATGAAAACCT 59.930 40.000 0.00 0.00 46.40 3.50
5121 5281 6.459670 AGGTGAAATGAAAACCTTACGTTT 57.540 33.333 0.00 0.00 46.92 3.60
5157 5317 2.380084 TTTGGTCAGAGGCGATACAC 57.620 50.000 0.00 0.00 0.00 2.90
5158 5318 0.535335 TTGGTCAGAGGCGATACACC 59.465 55.000 0.00 0.00 0.00 4.16
5185 5347 8.464770 TGATAATTTTGTTTGCTTACTCATGC 57.535 30.769 0.00 0.00 0.00 4.06
5198 5360 5.176590 GCTTACTCATGCATGAAGTAGTAGC 59.823 44.000 28.39 26.86 36.18 3.58
5199 5361 6.471233 TTACTCATGCATGAAGTAGTAGCT 57.529 37.500 28.39 9.58 36.18 3.32
5200 5362 5.350504 ACTCATGCATGAAGTAGTAGCTT 57.649 39.130 28.39 0.00 36.18 3.74
5201 5363 5.738909 ACTCATGCATGAAGTAGTAGCTTT 58.261 37.500 28.39 0.00 36.18 3.51
5202 5364 5.583854 ACTCATGCATGAAGTAGTAGCTTTG 59.416 40.000 28.39 14.94 36.18 2.77
5224 5386 5.412640 TGATTTGCTATGGTTCAATGCTTG 58.587 37.500 0.00 0.00 0.00 4.01
5239 5401 1.202475 TGCTTGTGTAGTTCGTGCTCA 60.202 47.619 0.00 0.00 0.00 4.26
5240 5402 1.192534 GCTTGTGTAGTTCGTGCTCAC 59.807 52.381 0.00 0.00 0.00 3.51
5241 5403 2.469826 CTTGTGTAGTTCGTGCTCACA 58.530 47.619 0.69 0.00 37.27 3.58
5242 5404 2.812358 TGTGTAGTTCGTGCTCACAT 57.188 45.000 0.69 0.00 34.74 3.21
5243 5405 3.106242 TGTGTAGTTCGTGCTCACATT 57.894 42.857 0.69 0.00 34.74 2.71
5244 5406 3.462982 TGTGTAGTTCGTGCTCACATTT 58.537 40.909 0.69 0.00 34.74 2.32
5245 5407 3.493129 TGTGTAGTTCGTGCTCACATTTC 59.507 43.478 0.69 0.00 34.74 2.17
5246 5408 3.741344 GTGTAGTTCGTGCTCACATTTCT 59.259 43.478 0.69 0.00 0.00 2.52
5247 5409 4.211374 GTGTAGTTCGTGCTCACATTTCTT 59.789 41.667 0.69 0.00 0.00 2.52
5248 5410 4.814234 TGTAGTTCGTGCTCACATTTCTTT 59.186 37.500 0.69 0.00 0.00 2.52
5249 5411 4.900635 AGTTCGTGCTCACATTTCTTTT 57.099 36.364 0.69 0.00 0.00 2.27
5250 5412 6.480651 TGTAGTTCGTGCTCACATTTCTTTTA 59.519 34.615 0.69 0.00 0.00 1.52
5251 5413 6.371809 AGTTCGTGCTCACATTTCTTTTAA 57.628 33.333 0.69 0.00 0.00 1.52
5252 5414 6.791303 AGTTCGTGCTCACATTTCTTTTAAA 58.209 32.000 0.69 0.00 0.00 1.52
5253 5415 7.254852 AGTTCGTGCTCACATTTCTTTTAAAA 58.745 30.769 0.00 0.00 0.00 1.52
5254 5416 7.920682 AGTTCGTGCTCACATTTCTTTTAAAAT 59.079 29.630 0.09 0.00 0.00 1.82
5255 5417 8.539674 GTTCGTGCTCACATTTCTTTTAAAATT 58.460 29.630 0.09 0.00 0.00 1.82
5256 5418 8.060020 TCGTGCTCACATTTCTTTTAAAATTG 57.940 30.769 0.09 0.78 0.00 2.32
5257 5419 6.787043 CGTGCTCACATTTCTTTTAAAATTGC 59.213 34.615 0.09 0.00 0.00 3.56
5258 5420 7.306749 CGTGCTCACATTTCTTTTAAAATTGCT 60.307 33.333 0.09 0.00 0.00 3.91
5259 5421 7.795272 GTGCTCACATTTCTTTTAAAATTGCTG 59.205 33.333 0.09 0.94 0.00 4.41
5260 5422 7.041916 TGCTCACATTTCTTTTAAAATTGCTGG 60.042 33.333 0.09 0.00 0.00 4.85
5261 5423 7.041848 GCTCACATTTCTTTTAAAATTGCTGGT 60.042 33.333 0.09 0.00 0.00 4.00
5262 5424 8.729805 TCACATTTCTTTTAAAATTGCTGGTT 57.270 26.923 0.09 0.00 0.00 3.67
5263 5425 9.171877 TCACATTTCTTTTAAAATTGCTGGTTT 57.828 25.926 0.09 0.00 0.00 3.27
5268 5430 9.943163 TTTCTTTTAAAATTGCTGGTTTAATGC 57.057 25.926 0.09 0.00 31.21 3.56
5269 5431 8.093659 TCTTTTAAAATTGCTGGTTTAATGCC 57.906 30.769 0.09 0.00 31.21 4.40
5270 5432 6.473397 TTTAAAATTGCTGGTTTAATGCCG 57.527 33.333 0.00 0.00 31.21 5.69
5271 5433 2.671130 AATTGCTGGTTTAATGCCGG 57.329 45.000 0.00 0.00 35.53 6.13
5272 5434 1.846007 ATTGCTGGTTTAATGCCGGA 58.154 45.000 5.05 0.00 34.35 5.14
5273 5435 1.846007 TTGCTGGTTTAATGCCGGAT 58.154 45.000 5.05 0.00 34.35 4.18
5274 5436 1.388547 TGCTGGTTTAATGCCGGATC 58.611 50.000 5.05 0.00 34.35 3.36
5275 5437 1.340502 TGCTGGTTTAATGCCGGATCA 60.341 47.619 5.05 0.00 34.35 2.92
5276 5438 1.065551 GCTGGTTTAATGCCGGATCAC 59.934 52.381 5.05 0.00 34.35 3.06
5277 5439 2.364632 CTGGTTTAATGCCGGATCACA 58.635 47.619 5.05 0.00 34.35 3.58
5278 5440 2.951642 CTGGTTTAATGCCGGATCACAT 59.048 45.455 5.05 0.00 34.35 3.21
5279 5441 4.133820 CTGGTTTAATGCCGGATCACATA 58.866 43.478 5.05 0.00 34.35 2.29
5280 5442 3.880490 TGGTTTAATGCCGGATCACATAC 59.120 43.478 5.05 0.00 0.00 2.39
5281 5443 4.134563 GGTTTAATGCCGGATCACATACT 58.865 43.478 5.05 0.00 0.00 2.12
5282 5444 4.578928 GGTTTAATGCCGGATCACATACTT 59.421 41.667 5.05 0.00 0.00 2.24
5283 5445 5.067283 GGTTTAATGCCGGATCACATACTTT 59.933 40.000 5.05 0.00 0.00 2.66
5338 5500 3.130516 CGGAGTATGTAGTGGCTCTTTCA 59.869 47.826 0.00 0.00 0.00 2.69
5350 5512 2.302260 GCTCTTTCATTCTAAGGCCCC 58.698 52.381 0.00 0.00 0.00 5.80
5355 5517 3.366052 TTCATTCTAAGGCCCCTGTTC 57.634 47.619 0.00 0.00 0.00 3.18
5358 5520 0.328258 TTCTAAGGCCCCTGTTCAGC 59.672 55.000 0.00 0.00 0.00 4.26
5370 5532 3.367703 CCCTGTTCAGCAGCCTATTTTTG 60.368 47.826 0.00 0.00 43.71 2.44
5372 5534 3.495331 TGTTCAGCAGCCTATTTTTGGA 58.505 40.909 0.00 0.00 0.00 3.53
5375 5537 5.714333 TGTTCAGCAGCCTATTTTTGGATTA 59.286 36.000 0.00 0.00 0.00 1.75
5400 5562 7.553504 AAAAATCAAGGTAAAATACAGGCCT 57.446 32.000 0.00 0.00 0.00 5.19
5419 5581 5.047092 AGGCCTGTAAAATGGTTCATTTCAG 60.047 40.000 3.11 9.55 42.32 3.02
5420 5582 5.170748 GCCTGTAAAATGGTTCATTTCAGG 58.829 41.667 22.99 22.99 46.76 3.86
5421 5583 5.170748 CCTGTAAAATGGTTCATTTCAGGC 58.829 41.667 19.13 7.95 42.85 4.85
5422 5584 5.146010 TGTAAAATGGTTCATTTCAGGCC 57.854 39.130 0.00 0.00 42.32 5.19
5423 5585 3.701205 AAAATGGTTCATTTCAGGCCC 57.299 42.857 0.00 0.00 42.32 5.80
5424 5586 1.571955 AATGGTTCATTTCAGGCCCC 58.428 50.000 0.00 0.00 28.76 5.80
5425 5587 0.684153 ATGGTTCATTTCAGGCCCCG 60.684 55.000 0.00 0.00 0.00 5.73
5426 5588 2.710902 GGTTCATTTCAGGCCCCGC 61.711 63.158 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.191485 GGCGCGTTGTCGTCATCG 62.191 66.667 8.43 8.46 39.05 3.84
2 3 2.279937 GAAGGCGCGTTGTCGTCATC 62.280 60.000 21.52 0.00 36.38 2.92
3 4 2.357034 AAGGCGCGTTGTCGTCAT 60.357 55.556 15.53 0.00 36.38 3.06
4 5 3.033764 GAAGGCGCGTTGTCGTCA 61.034 61.111 21.52 0.00 36.38 4.35
5 6 4.117372 CGAAGGCGCGTTGTCGTC 62.117 66.667 21.52 4.25 39.49 4.20
6 7 4.634133 TCGAAGGCGCGTTGTCGT 62.634 61.111 21.52 0.00 39.49 4.34
7 8 4.117372 GTCGAAGGCGCGTTGTCG 62.117 66.667 21.52 18.28 37.46 4.35
8 9 2.717809 GAGTCGAAGGCGCGTTGTC 61.718 63.158 21.52 5.85 36.95 3.18
9 10 2.733593 GAGTCGAAGGCGCGTTGT 60.734 61.111 21.52 0.00 36.95 3.32
15 16 0.456312 ACTAAAGCGAGTCGAAGGCG 60.456 55.000 18.61 3.37 36.95 5.52
16 17 0.992802 CACTAAAGCGAGTCGAAGGC 59.007 55.000 18.61 0.00 0.00 4.35
17 18 0.992802 GCACTAAAGCGAGTCGAAGG 59.007 55.000 18.61 3.43 0.00 3.46
18 19 1.983972 AGCACTAAAGCGAGTCGAAG 58.016 50.000 18.61 9.68 40.15 3.79
19 20 2.058798 CAAGCACTAAAGCGAGTCGAA 58.941 47.619 18.61 0.00 40.15 3.71
20 21 1.000607 ACAAGCACTAAAGCGAGTCGA 60.001 47.619 18.61 0.00 40.15 4.20
21 22 1.419374 ACAAGCACTAAAGCGAGTCG 58.581 50.000 8.54 8.54 40.15 4.18
22 23 3.576648 ACTACAAGCACTAAAGCGAGTC 58.423 45.455 0.00 0.00 40.15 3.36
23 24 3.576648 GACTACAAGCACTAAAGCGAGT 58.423 45.455 0.00 0.00 40.15 4.18
24 25 2.594654 CGACTACAAGCACTAAAGCGAG 59.405 50.000 0.00 0.00 40.15 5.03
25 26 2.030540 ACGACTACAAGCACTAAAGCGA 60.031 45.455 0.00 0.00 40.15 4.93
26 27 2.325761 ACGACTACAAGCACTAAAGCG 58.674 47.619 0.00 0.00 40.15 4.68
27 28 3.121445 GTGACGACTACAAGCACTAAAGC 59.879 47.826 0.00 0.00 0.00 3.51
28 29 4.547532 AGTGACGACTACAAGCACTAAAG 58.452 43.478 0.00 0.00 37.98 1.85
29 30 4.579454 AGTGACGACTACAAGCACTAAA 57.421 40.909 0.00 0.00 37.98 1.85
30 31 4.155462 CCTAGTGACGACTACAAGCACTAA 59.845 45.833 0.00 0.00 40.36 2.24
31 32 3.688185 CCTAGTGACGACTACAAGCACTA 59.312 47.826 0.00 0.00 40.08 2.74
32 33 2.488545 CCTAGTGACGACTACAAGCACT 59.511 50.000 0.00 0.00 42.04 4.40
33 34 2.228343 ACCTAGTGACGACTACAAGCAC 59.772 50.000 0.00 0.00 33.21 4.40
34 35 2.228103 CACCTAGTGACGACTACAAGCA 59.772 50.000 0.00 0.00 35.23 3.91
35 36 2.415625 CCACCTAGTGACGACTACAAGC 60.416 54.545 0.00 0.00 35.23 4.01
36 37 2.818432 ACCACCTAGTGACGACTACAAG 59.182 50.000 0.00 0.00 35.23 3.16
37 38 2.816087 GACCACCTAGTGACGACTACAA 59.184 50.000 0.00 0.00 35.23 2.41
38 39 2.430465 GACCACCTAGTGACGACTACA 58.570 52.381 0.00 0.00 35.23 2.74
39 40 1.742268 GGACCACCTAGTGACGACTAC 59.258 57.143 0.00 0.00 35.23 2.73
40 41 1.352017 TGGACCACCTAGTGACGACTA 59.648 52.381 0.00 0.00 35.23 2.59
41 42 0.111832 TGGACCACCTAGTGACGACT 59.888 55.000 0.00 0.00 35.23 4.18
42 43 0.963962 TTGGACCACCTAGTGACGAC 59.036 55.000 0.00 0.00 35.23 4.34
43 44 1.254026 CTTGGACCACCTAGTGACGA 58.746 55.000 0.00 0.00 35.23 4.20
44 45 0.246635 CCTTGGACCACCTAGTGACG 59.753 60.000 0.00 0.00 37.33 4.35
45 46 1.640917 TCCTTGGACCACCTAGTGAC 58.359 55.000 0.00 0.00 37.33 3.67
46 47 2.044492 AGATCCTTGGACCACCTAGTGA 59.956 50.000 0.00 0.00 37.33 3.41
47 48 2.169352 CAGATCCTTGGACCACCTAGTG 59.831 54.545 0.00 0.00 37.33 2.74
48 49 2.472029 CAGATCCTTGGACCACCTAGT 58.528 52.381 0.00 0.00 37.33 2.57
49 50 1.765314 CCAGATCCTTGGACCACCTAG 59.235 57.143 0.00 0.00 40.87 3.02
50 51 1.080498 ACCAGATCCTTGGACCACCTA 59.920 52.381 7.95 0.00 40.87 3.08
51 52 0.178861 ACCAGATCCTTGGACCACCT 60.179 55.000 7.95 0.00 40.87 4.00
52 53 0.698818 AACCAGATCCTTGGACCACC 59.301 55.000 7.95 0.00 40.87 4.61
53 54 1.073923 ACAACCAGATCCTTGGACCAC 59.926 52.381 7.95 0.00 40.87 4.16
54 55 1.444933 ACAACCAGATCCTTGGACCA 58.555 50.000 7.95 0.00 40.87 4.02
55 56 3.713826 TTACAACCAGATCCTTGGACC 57.286 47.619 7.95 0.00 40.87 4.46
56 57 6.590234 AAAATTACAACCAGATCCTTGGAC 57.410 37.500 7.95 0.00 40.87 4.02
57 58 8.893563 ATAAAAATTACAACCAGATCCTTGGA 57.106 30.769 7.95 0.00 40.87 3.53
82 83 9.478768 TGACAGTACAACGAACATTAGAAATAA 57.521 29.630 0.00 0.00 0.00 1.40
83 84 9.647797 ATGACAGTACAACGAACATTAGAAATA 57.352 29.630 0.00 0.00 0.00 1.40
84 85 7.956420 TGACAGTACAACGAACATTAGAAAT 57.044 32.000 0.00 0.00 0.00 2.17
85 86 7.654116 TCATGACAGTACAACGAACATTAGAAA 59.346 33.333 0.00 0.00 0.00 2.52
86 87 7.149307 TCATGACAGTACAACGAACATTAGAA 58.851 34.615 0.00 0.00 0.00 2.10
87 88 6.683715 TCATGACAGTACAACGAACATTAGA 58.316 36.000 0.00 0.00 0.00 2.10
88 89 6.944557 TCATGACAGTACAACGAACATTAG 57.055 37.500 0.00 0.00 0.00 1.73
89 90 7.600752 TCAATCATGACAGTACAACGAACATTA 59.399 33.333 0.00 0.00 0.00 1.90
90 91 6.426633 TCAATCATGACAGTACAACGAACATT 59.573 34.615 0.00 0.00 0.00 2.71
91 92 5.931724 TCAATCATGACAGTACAACGAACAT 59.068 36.000 0.00 0.00 0.00 2.71
92 93 5.293560 TCAATCATGACAGTACAACGAACA 58.706 37.500 0.00 0.00 0.00 3.18
93 94 5.839262 TCAATCATGACAGTACAACGAAC 57.161 39.130 0.00 0.00 0.00 3.95
94 95 6.220201 TCTTCAATCATGACAGTACAACGAA 58.780 36.000 0.00 0.00 34.61 3.85
95 96 5.778862 TCTTCAATCATGACAGTACAACGA 58.221 37.500 0.00 0.00 34.61 3.85
96 97 6.311200 TCATCTTCAATCATGACAGTACAACG 59.689 38.462 0.00 0.00 34.61 4.10
97 98 7.601073 TCATCTTCAATCATGACAGTACAAC 57.399 36.000 0.00 0.00 34.61 3.32
98 99 8.797350 ATTCATCTTCAATCATGACAGTACAA 57.203 30.769 0.00 0.00 34.61 2.41
99 100 9.538508 CTATTCATCTTCAATCATGACAGTACA 57.461 33.333 0.00 0.00 34.61 2.90
100 101 9.755804 TCTATTCATCTTCAATCATGACAGTAC 57.244 33.333 0.00 0.00 34.61 2.73
102 103 9.491675 GATCTATTCATCTTCAATCATGACAGT 57.508 33.333 0.00 0.00 34.61 3.55
103 104 9.490379 TGATCTATTCATCTTCAATCATGACAG 57.510 33.333 0.00 0.00 34.61 3.51
104 105 9.841295 TTGATCTATTCATCTTCAATCATGACA 57.159 29.630 0.00 0.00 32.31 3.58
130 131 9.520204 CACACTCATTTTATGTGAGAAAACTTT 57.480 29.630 9.86 0.00 45.34 2.66
131 132 8.137437 CCACACTCATTTTATGTGAGAAAACTT 58.863 33.333 9.86 0.00 45.34 2.66
132 133 7.285401 ACCACACTCATTTTATGTGAGAAAACT 59.715 33.333 9.86 0.00 45.34 2.66
133 134 7.379529 CACCACACTCATTTTATGTGAGAAAAC 59.620 37.037 9.86 0.00 45.34 2.43
134 135 7.068103 ACACCACACTCATTTTATGTGAGAAAA 59.932 33.333 9.86 0.00 45.34 2.29
135 136 6.545666 ACACCACACTCATTTTATGTGAGAAA 59.454 34.615 9.86 0.00 45.34 2.52
136 137 6.061441 ACACCACACTCATTTTATGTGAGAA 58.939 36.000 9.86 0.00 45.34 2.87
137 138 5.620206 ACACCACACTCATTTTATGTGAGA 58.380 37.500 9.86 0.00 45.34 3.27
138 139 5.947228 ACACCACACTCATTTTATGTGAG 57.053 39.130 5.20 1.85 45.34 3.51
139 140 7.994425 AATACACCACACTCATTTTATGTGA 57.006 32.000 5.20 0.00 45.34 3.58
147 148 9.859427 CATGATTTAAAATACACCACACTCATT 57.141 29.630 0.00 0.00 0.00 2.57
148 149 8.469200 CCATGATTTAAAATACACCACACTCAT 58.531 33.333 0.00 0.00 0.00 2.90
149 150 7.667635 TCCATGATTTAAAATACACCACACTCA 59.332 33.333 0.00 0.00 0.00 3.41
162 163 9.672673 TTTTTCCACTTTGTCCATGATTTAAAA 57.327 25.926 0.00 0.00 0.00 1.52
190 191 9.058424 GTAAAAGTATTAAAGTCCATTTGTCGC 57.942 33.333 0.00 0.00 32.01 5.19
195 196 9.511272 AGTCGGTAAAAGTATTAAAGTCCATTT 57.489 29.630 0.00 0.00 34.72 2.32
206 208 9.063615 AGTTGATTTTGAGTCGGTAAAAGTATT 57.936 29.630 0.00 0.00 0.00 1.89
207 209 8.617290 AGTTGATTTTGAGTCGGTAAAAGTAT 57.383 30.769 0.00 0.00 0.00 2.12
208 210 7.095940 CGAGTTGATTTTGAGTCGGTAAAAGTA 60.096 37.037 0.00 0.00 35.62 2.24
210 212 6.071463 CGAGTTGATTTTGAGTCGGTAAAAG 58.929 40.000 0.00 0.00 35.62 2.27
217 219 3.247648 ACCAACGAGTTGATTTTGAGTCG 59.752 43.478 16.66 0.00 42.93 4.18
220 222 6.539649 TTCTACCAACGAGTTGATTTTGAG 57.460 37.500 16.66 1.76 42.93 3.02
233 235 2.409975 ACCGTGTTGATTCTACCAACG 58.590 47.619 0.00 4.82 44.92 4.10
290 292 5.079998 TGGTGATGACCTAGATCTATGGT 57.920 43.478 18.34 18.34 43.58 3.55
301 303 0.617535 TGGTCCGATGGTGATGACCT 60.618 55.000 2.11 0.00 45.98 3.85
303 305 0.537188 AGTGGTCCGATGGTGATGAC 59.463 55.000 0.00 0.00 0.00 3.06
309 311 1.876416 CGAAACAAGTGGTCCGATGGT 60.876 52.381 0.00 0.00 0.00 3.55
321 323 6.453643 TCGAATCTTTTCTCTCGAAACAAG 57.546 37.500 0.00 0.00 38.77 3.16
329 331 7.278868 TGGAGCTAAATTCGAATCTTTTCTCTC 59.721 37.037 11.83 11.70 0.00 3.20
398 403 3.305094 CGCACGTTCGGTCTTATAACAAT 59.695 43.478 0.00 0.00 0.00 2.71
405 410 1.130955 GAAACGCACGTTCGGTCTTA 58.869 50.000 13.06 0.00 37.35 2.10
411 416 2.049228 AGACTAAGAAACGCACGTTCG 58.951 47.619 9.10 5.94 37.35 3.95
417 422 7.481642 CCTTTCTATAGAGACTAAGAAACGCA 58.518 38.462 11.80 0.00 34.95 5.24
418 423 6.418523 GCCTTTCTATAGAGACTAAGAAACGC 59.581 42.308 11.80 4.97 34.95 4.84
419 424 7.708998 AGCCTTTCTATAGAGACTAAGAAACG 58.291 38.462 11.80 0.00 34.95 3.60
420 425 9.878667 AAAGCCTTTCTATAGAGACTAAGAAAC 57.121 33.333 11.80 3.73 34.95 2.78
423 428 8.824756 TCAAAGCCTTTCTATAGAGACTAAGA 57.175 34.615 11.80 4.56 0.00 2.10
426 431 9.080097 GGTATCAAAGCCTTTCTATAGAGACTA 57.920 37.037 2.02 0.00 0.00 2.59
427 432 7.015779 GGGTATCAAAGCCTTTCTATAGAGACT 59.984 40.741 2.02 0.00 42.89 3.24
428 433 7.156000 GGGTATCAAAGCCTTTCTATAGAGAC 58.844 42.308 2.02 0.00 42.89 3.36
429 434 6.270231 GGGGTATCAAAGCCTTTCTATAGAGA 59.730 42.308 2.02 0.00 45.70 3.10
430 435 6.271159 AGGGGTATCAAAGCCTTTCTATAGAG 59.729 42.308 2.02 0.00 45.70 2.43
434 439 4.141158 CCAGGGGTATCAAAGCCTTTCTAT 60.141 45.833 0.00 0.00 45.70 1.98
565 573 7.757624 GGCGATGTACAAAAGATGGAAATAAAA 59.242 33.333 0.00 0.00 0.00 1.52
566 574 7.122055 AGGCGATGTACAAAAGATGGAAATAAA 59.878 33.333 0.00 0.00 0.00 1.40
567 575 6.601613 AGGCGATGTACAAAAGATGGAAATAA 59.398 34.615 0.00 0.00 0.00 1.40
569 577 4.949856 AGGCGATGTACAAAAGATGGAAAT 59.050 37.500 0.00 0.00 0.00 2.17
572 580 3.531538 GAGGCGATGTACAAAAGATGGA 58.468 45.455 0.00 0.00 0.00 3.41
573 581 2.285220 CGAGGCGATGTACAAAAGATGG 59.715 50.000 0.00 0.00 0.00 3.51
575 583 2.167693 TCCGAGGCGATGTACAAAAGAT 59.832 45.455 0.00 0.00 0.00 2.40
577 585 1.927174 CTCCGAGGCGATGTACAAAAG 59.073 52.381 0.00 0.00 0.00 2.27
579 587 1.135199 GTCTCCGAGGCGATGTACAAA 60.135 52.381 0.00 0.00 0.00 2.83
581 589 0.393944 AGTCTCCGAGGCGATGTACA 60.394 55.000 0.00 0.00 0.00 2.90
582 590 0.739561 AAGTCTCCGAGGCGATGTAC 59.260 55.000 0.00 0.00 0.00 2.90
584 592 1.693627 ATAAGTCTCCGAGGCGATGT 58.306 50.000 0.00 0.00 0.00 3.06
636 661 7.776030 TCTTTTTGGCCTCCACGATATTTATAA 59.224 33.333 3.32 0.00 30.78 0.98
637 662 7.284074 TCTTTTTGGCCTCCACGATATTTATA 58.716 34.615 3.32 0.00 30.78 0.98
639 664 5.502079 TCTTTTTGGCCTCCACGATATTTA 58.498 37.500 3.32 0.00 30.78 1.40
646 671 1.826385 AGATCTTTTTGGCCTCCACG 58.174 50.000 3.32 0.00 30.78 4.94
666 691 5.624159 CCATAGGATGCTTACTTCCAATCA 58.376 41.667 0.00 0.00 41.55 2.57
1186 1229 2.876645 GAAGTCGAGCGTGGCGAG 60.877 66.667 0.00 0.00 38.59 5.03
1321 1404 2.892425 GAACATCTCGCGGGCCTG 60.892 66.667 7.41 7.41 0.00 4.85
1371 1454 0.323629 TGACCAAAAGCTACTCCCCG 59.676 55.000 0.00 0.00 0.00 5.73
1479 1565 2.278857 CTCGTTCGCCATCTCCGG 60.279 66.667 0.00 0.00 0.00 5.14
1891 1992 0.245539 TTCATCGTCCCGGTTGTCTC 59.754 55.000 0.00 0.00 0.00 3.36
2110 2211 5.692115 TGATGAGCATTAGTAAGTTCCCA 57.308 39.130 0.00 0.00 0.00 4.37
2111 2212 6.767902 TCATTGATGAGCATTAGTAAGTTCCC 59.232 38.462 0.00 0.00 32.11 3.97
2113 2214 7.802251 GCATCATTGATGAGCATTAGTAAGTTC 59.198 37.037 26.94 3.07 42.09 3.01
2116 2217 7.436430 AGCATCATTGATGAGCATTAGTAAG 57.564 36.000 26.94 0.00 42.09 2.34
2123 2224 3.833732 AGGAAGCATCATTGATGAGCAT 58.166 40.909 26.94 11.66 42.09 3.79
2126 2227 7.662258 AGAATAGAAGGAAGCATCATTGATGAG 59.338 37.037 26.94 5.34 42.09 2.90
2153 2254 6.407752 GGTTCTCCTATAAATCTCAAACCCGA 60.408 42.308 0.00 0.00 0.00 5.14
2154 2255 5.758784 GGTTCTCCTATAAATCTCAAACCCG 59.241 44.000 0.00 0.00 0.00 5.28
2203 2304 8.375465 GCAATTTTACATAATTTCTGTCAGCAC 58.625 33.333 0.00 0.00 0.00 4.40
2368 2472 3.009473 AGCAGAACTCTAGATTTTGCCCA 59.991 43.478 18.28 0.00 0.00 5.36
2444 2549 0.396435 AACTGAGTTGCGTGATGGGA 59.604 50.000 0.00 0.00 0.00 4.37
2446 2551 1.462283 CTGAACTGAGTTGCGTGATGG 59.538 52.381 0.90 0.00 0.00 3.51
2452 2557 2.349886 GCCTATTCTGAACTGAGTTGCG 59.650 50.000 0.90 0.00 0.00 4.85
2540 2648 8.418597 AGTTACCATACGTGATACCTCATTAT 57.581 34.615 0.00 0.00 32.98 1.28
2550 2658 6.534475 TCTTACCAAGTTACCATACGTGAT 57.466 37.500 0.00 0.00 30.41 3.06
2585 2693 2.819115 AGATATCAGCACGCTTGACAG 58.181 47.619 5.32 0.00 0.00 3.51
2708 2818 6.486993 GGAGACTTCCACTTTATCAACAACTT 59.513 38.462 0.00 0.00 43.45 2.66
2748 2858 9.360093 TGTTTAATTTCAACCAAATAATAGCGG 57.640 29.630 0.00 0.00 33.16 5.52
2945 3055 5.643348 TGCACGTGTCTTTATTGAGATGATT 59.357 36.000 18.38 0.00 0.00 2.57
2961 3071 0.177141 ACACAGGTACTTGCACGTGT 59.823 50.000 18.38 0.14 45.65 4.49
2997 3107 3.500448 TTACTGCTGAAATGTGGTCCA 57.500 42.857 0.00 0.00 0.00 4.02
3005 3117 6.438425 AGGAAACATGGATTTACTGCTGAAAT 59.562 34.615 0.00 0.00 31.16 2.17
3007 3119 5.324409 AGGAAACATGGATTTACTGCTGAA 58.676 37.500 0.00 0.00 31.16 3.02
3011 3123 5.183904 AGACAAGGAAACATGGATTTACTGC 59.816 40.000 0.00 0.00 32.80 4.40
3012 3124 6.824305 AGACAAGGAAACATGGATTTACTG 57.176 37.500 0.00 0.00 32.80 2.74
3014 3126 6.015434 ACCAAGACAAGGAAACATGGATTTAC 60.015 38.462 0.00 0.00 32.07 2.01
3031 3143 8.106462 TGTTATATCAGGAATGAAACCAAGACA 58.894 33.333 0.00 0.00 0.00 3.41
3086 3198 6.649155 TGCATAGAACTTTCTATAAGGCACA 58.351 36.000 14.15 5.05 46.01 4.57
3117 3229 1.541147 ACATGCATGTCAAGGGAAACG 59.459 47.619 26.61 0.00 35.87 3.60
3291 3403 4.336713 ACAAAAGCAACCAAGAGAGAACTC 59.663 41.667 0.00 0.00 42.90 3.01
3377 3490 6.556874 TCCACCAAATCTAAACCATTCCTTTT 59.443 34.615 0.00 0.00 0.00 2.27
3405 3518 5.825593 ATAAGAACTGTTGAGGGACTTGA 57.174 39.130 0.00 0.00 41.55 3.02
3411 3524 6.884280 AACTGAAATAAGAACTGTTGAGGG 57.116 37.500 0.00 0.00 0.00 4.30
3423 3538 9.571810 TTATGCTGTGCAAATAACTGAAATAAG 57.428 29.630 0.00 0.00 43.62 1.73
3480 3596 5.682234 TTCTGGCTGATGTGAAGAATCTA 57.318 39.130 0.00 0.00 0.00 1.98
3523 3641 4.893424 TTTCACTTTACTGTTCTGCACC 57.107 40.909 0.00 0.00 0.00 5.01
3548 3666 8.621532 AGTCTAAACTGCTGATCATTAACAAA 57.378 30.769 0.00 0.00 33.32 2.83
3553 3671 7.840931 TCAAGAGTCTAAACTGCTGATCATTA 58.159 34.615 0.00 0.00 35.28 1.90
3554 3672 6.705302 TCAAGAGTCTAAACTGCTGATCATT 58.295 36.000 0.00 0.00 35.28 2.57
3555 3673 6.291648 TCAAGAGTCTAAACTGCTGATCAT 57.708 37.500 0.00 0.00 35.28 2.45
3556 3674 5.728637 TCAAGAGTCTAAACTGCTGATCA 57.271 39.130 0.00 0.00 35.28 2.92
3557 3675 6.162777 AGTTCAAGAGTCTAAACTGCTGATC 58.837 40.000 16.23 4.93 35.28 2.92
3558 3676 6.107901 AGTTCAAGAGTCTAAACTGCTGAT 57.892 37.500 16.23 0.00 35.28 2.90
3559 3677 5.537300 AGTTCAAGAGTCTAAACTGCTGA 57.463 39.130 16.23 2.86 35.28 4.26
3560 3678 7.386299 ACATTAGTTCAAGAGTCTAAACTGCTG 59.614 37.037 22.25 20.10 35.28 4.41
3561 3679 7.445945 ACATTAGTTCAAGAGTCTAAACTGCT 58.554 34.615 22.25 11.81 35.28 4.24
3562 3680 7.385205 TGACATTAGTTCAAGAGTCTAAACTGC 59.615 37.037 22.25 11.80 35.28 4.40
3563 3681 8.704234 GTGACATTAGTTCAAGAGTCTAAACTG 58.296 37.037 22.25 13.65 35.28 3.16
3564 3682 7.873505 GGTGACATTAGTTCAAGAGTCTAAACT 59.126 37.037 19.29 19.29 38.88 2.66
3567 3685 7.540474 AGGTGACATTAGTTCAAGAGTCTAA 57.460 36.000 0.00 0.00 0.00 2.10
3571 3689 4.757149 GCAAGGTGACATTAGTTCAAGAGT 59.243 41.667 0.00 0.00 0.00 3.24
3619 3737 6.876257 TGTAACTTGTATACATGTGCACATCA 59.124 34.615 29.23 20.12 34.92 3.07
3636 3754 3.181526 GCTGAGCAAGACGATGTAACTTG 60.182 47.826 0.00 0.00 42.33 3.16
3637 3755 2.996621 GCTGAGCAAGACGATGTAACTT 59.003 45.455 0.00 0.00 0.00 2.66
3639 3757 2.611518 AGCTGAGCAAGACGATGTAAC 58.388 47.619 7.39 0.00 0.00 2.50
3647 3779 5.004922 ACAGATAAGTAGCTGAGCAAGAC 57.995 43.478 7.39 1.22 41.99 3.01
4129 4265 3.319198 GCCCGGAGTCCAGGTTCA 61.319 66.667 13.22 0.00 0.00 3.18
4339 4478 0.456312 CTTGGTCGAGAGTACACGCC 60.456 60.000 0.00 4.97 0.00 5.68
4475 4614 1.342819 AGTTAGCCAGATCATCTCCGC 59.657 52.381 0.00 0.00 0.00 5.54
4508 4647 1.278985 TGTCCTTCATCTGCCGTCAAT 59.721 47.619 0.00 0.00 0.00 2.57
4552 4691 2.386779 TGCCTCTCCTCTCTCATCAAG 58.613 52.381 0.00 0.00 0.00 3.02
4646 4788 2.791560 CCAGTTCACATAGAAGATCGCG 59.208 50.000 0.00 0.00 36.78 5.87
4710 4852 8.933807 CACTGCATAGATACTCCATAAAATGAG 58.066 37.037 0.00 0.00 0.00 2.90
4713 4855 6.656693 GCCACTGCATAGATACTCCATAAAAT 59.343 38.462 0.00 0.00 37.47 1.82
4716 4858 4.840680 AGCCACTGCATAGATACTCCATAA 59.159 41.667 0.00 0.00 41.13 1.90
4718 4860 3.246301 AGCCACTGCATAGATACTCCAT 58.754 45.455 0.00 0.00 41.13 3.41
4719 4861 2.630098 GAGCCACTGCATAGATACTCCA 59.370 50.000 0.00 0.00 41.13 3.86
4720 4862 2.896685 AGAGCCACTGCATAGATACTCC 59.103 50.000 0.00 0.00 41.13 3.85
4722 4864 3.323403 GGAAGAGCCACTGCATAGATACT 59.677 47.826 0.00 0.00 41.13 2.12
4723 4865 3.070159 TGGAAGAGCCACTGCATAGATAC 59.930 47.826 0.00 0.00 43.33 2.24
4780 4929 8.518430 TGCATTTTGTACCATGTAACTATGAT 57.482 30.769 0.00 0.00 0.00 2.45
4807 4967 1.480545 TGTACATCTACGCTGGCATGT 59.519 47.619 0.00 0.00 33.95 3.21
4809 4969 2.979814 TTGTACATCTACGCTGGCAT 57.020 45.000 0.00 0.00 0.00 4.40
4863 5023 4.759096 GATGCAACGCACGGGCAC 62.759 66.667 11.77 0.00 43.04 5.01
4868 5028 1.221466 ATATCCCGATGCAACGCACG 61.221 55.000 11.32 0.54 43.04 5.34
4869 5029 1.790755 TATATCCCGATGCAACGCAC 58.209 50.000 11.32 0.00 43.04 5.34
4870 5030 2.535012 TTATATCCCGATGCAACGCA 57.465 45.000 11.32 0.00 44.86 5.24
4871 5031 5.734855 ATATTTATATCCCGATGCAACGC 57.265 39.130 11.32 0.00 0.00 4.84
4872 5032 7.539712 AGAATATTTATATCCCGATGCAACG 57.460 36.000 9.71 9.71 0.00 4.10
4873 5033 9.601217 ACTAGAATATTTATATCCCGATGCAAC 57.399 33.333 0.00 0.00 0.00 4.17
4893 5053 9.595823 GCTAAATCACAACCTAACATACTAGAA 57.404 33.333 0.00 0.00 0.00 2.10
4894 5054 8.978472 AGCTAAATCACAACCTAACATACTAGA 58.022 33.333 0.00 0.00 0.00 2.43
4897 5057 8.537016 TGTAGCTAAATCACAACCTAACATACT 58.463 33.333 0.00 0.00 0.00 2.12
4898 5058 8.712285 TGTAGCTAAATCACAACCTAACATAC 57.288 34.615 0.00 0.00 0.00 2.39
4899 5059 9.727859 TTTGTAGCTAAATCACAACCTAACATA 57.272 29.630 0.00 0.00 32.19 2.29
4900 5060 8.630054 TTTGTAGCTAAATCACAACCTAACAT 57.370 30.769 0.00 0.00 32.19 2.71
4901 5061 8.630054 ATTTGTAGCTAAATCACAACCTAACA 57.370 30.769 0.00 0.00 32.19 2.41
4909 5069 9.877137 CGCATTATTATTTGTAGCTAAATCACA 57.123 29.630 0.00 0.00 32.79 3.58
4915 5075 9.877137 CACAATCGCATTATTATTTGTAGCTAA 57.123 29.630 0.00 0.00 0.00 3.09
4916 5076 9.051679 ACACAATCGCATTATTATTTGTAGCTA 57.948 29.630 0.00 0.00 0.00 3.32
4917 5077 7.930217 ACACAATCGCATTATTATTTGTAGCT 58.070 30.769 0.00 0.00 0.00 3.32
4918 5078 9.658475 TTACACAATCGCATTATTATTTGTAGC 57.342 29.630 0.00 0.00 0.00 3.58
5057 5217 9.273016 CTTCGTCCAACCTTTCATGTATATAAT 57.727 33.333 0.00 0.00 0.00 1.28
5058 5218 7.713507 CCTTCGTCCAACCTTTCATGTATATAA 59.286 37.037 0.00 0.00 0.00 0.98
5059 5219 7.070198 TCCTTCGTCCAACCTTTCATGTATATA 59.930 37.037 0.00 0.00 0.00 0.86
5060 5220 6.055588 CCTTCGTCCAACCTTTCATGTATAT 58.944 40.000 0.00 0.00 0.00 0.86
5061 5221 5.188163 TCCTTCGTCCAACCTTTCATGTATA 59.812 40.000 0.00 0.00 0.00 1.47
5062 5222 4.019681 TCCTTCGTCCAACCTTTCATGTAT 60.020 41.667 0.00 0.00 0.00 2.29
5063 5223 3.325425 TCCTTCGTCCAACCTTTCATGTA 59.675 43.478 0.00 0.00 0.00 2.29
5064 5224 2.105821 TCCTTCGTCCAACCTTTCATGT 59.894 45.455 0.00 0.00 0.00 3.21
5065 5225 2.778299 TCCTTCGTCCAACCTTTCATG 58.222 47.619 0.00 0.00 0.00 3.07
5066 5226 3.009033 TCATCCTTCGTCCAACCTTTCAT 59.991 43.478 0.00 0.00 0.00 2.57
5067 5227 2.370519 TCATCCTTCGTCCAACCTTTCA 59.629 45.455 0.00 0.00 0.00 2.69
5068 5228 3.053831 TCATCCTTCGTCCAACCTTTC 57.946 47.619 0.00 0.00 0.00 2.62
5069 5229 3.347216 CATCATCCTTCGTCCAACCTTT 58.653 45.455 0.00 0.00 0.00 3.11
5070 5230 2.356125 CCATCATCCTTCGTCCAACCTT 60.356 50.000 0.00 0.00 0.00 3.50
5071 5231 1.210478 CCATCATCCTTCGTCCAACCT 59.790 52.381 0.00 0.00 0.00 3.50
5072 5232 1.668419 CCATCATCCTTCGTCCAACC 58.332 55.000 0.00 0.00 0.00 3.77
5073 5233 1.209504 TCCCATCATCCTTCGTCCAAC 59.790 52.381 0.00 0.00 0.00 3.77
5074 5234 1.578897 TCCCATCATCCTTCGTCCAA 58.421 50.000 0.00 0.00 0.00 3.53
5075 5235 1.486310 CTTCCCATCATCCTTCGTCCA 59.514 52.381 0.00 0.00 0.00 4.02
5076 5236 1.762957 TCTTCCCATCATCCTTCGTCC 59.237 52.381 0.00 0.00 0.00 4.79
5077 5237 3.543680 TTCTTCCCATCATCCTTCGTC 57.456 47.619 0.00 0.00 0.00 4.20
5078 5238 3.370953 CCTTTCTTCCCATCATCCTTCGT 60.371 47.826 0.00 0.00 0.00 3.85
5079 5239 3.209410 CCTTTCTTCCCATCATCCTTCG 58.791 50.000 0.00 0.00 0.00 3.79
5080 5240 3.950395 CACCTTTCTTCCCATCATCCTTC 59.050 47.826 0.00 0.00 0.00 3.46
5081 5241 3.593328 TCACCTTTCTTCCCATCATCCTT 59.407 43.478 0.00 0.00 0.00 3.36
5082 5242 3.192944 TCACCTTTCTTCCCATCATCCT 58.807 45.455 0.00 0.00 0.00 3.24
5083 5243 3.652057 TCACCTTTCTTCCCATCATCC 57.348 47.619 0.00 0.00 0.00 3.51
5084 5244 5.653769 TCATTTCACCTTTCTTCCCATCATC 59.346 40.000 0.00 0.00 0.00 2.92
5085 5245 5.582953 TCATTTCACCTTTCTTCCCATCAT 58.417 37.500 0.00 0.00 0.00 2.45
5086 5246 4.996793 TCATTTCACCTTTCTTCCCATCA 58.003 39.130 0.00 0.00 0.00 3.07
5087 5247 5.982890 TTCATTTCACCTTTCTTCCCATC 57.017 39.130 0.00 0.00 0.00 3.51
5088 5248 6.464322 GGTTTTCATTTCACCTTTCTTCCCAT 60.464 38.462 0.00 0.00 0.00 4.00
5089 5249 5.163353 GGTTTTCATTTCACCTTTCTTCCCA 60.163 40.000 0.00 0.00 0.00 4.37
5090 5250 5.070446 AGGTTTTCATTTCACCTTTCTTCCC 59.930 40.000 0.00 0.00 37.70 3.97
5091 5251 6.161855 AGGTTTTCATTTCACCTTTCTTCC 57.838 37.500 0.00 0.00 37.70 3.46
5092 5252 7.378728 CGTAAGGTTTTCATTTCACCTTTCTTC 59.621 37.037 8.08 0.00 46.85 2.87
5093 5253 7.147966 ACGTAAGGTTTTCATTTCACCTTTCTT 60.148 33.333 8.08 0.00 46.85 2.52
5094 5254 6.320418 ACGTAAGGTTTTCATTTCACCTTTCT 59.680 34.615 8.08 0.00 46.85 2.52
5095 5255 6.500910 ACGTAAGGTTTTCATTTCACCTTTC 58.499 36.000 8.08 2.95 46.85 2.62
5096 5256 6.459670 ACGTAAGGTTTTCATTTCACCTTT 57.540 33.333 8.08 0.00 46.85 3.11
5123 5283 8.696374 CCTCTGACCAAATCTCTACTACATAAA 58.304 37.037 0.00 0.00 0.00 1.40
5124 5284 7.201920 GCCTCTGACCAAATCTCTACTACATAA 60.202 40.741 0.00 0.00 0.00 1.90
5125 5285 6.265649 GCCTCTGACCAAATCTCTACTACATA 59.734 42.308 0.00 0.00 0.00 2.29
5126 5286 5.069781 GCCTCTGACCAAATCTCTACTACAT 59.930 44.000 0.00 0.00 0.00 2.29
5127 5287 4.402793 GCCTCTGACCAAATCTCTACTACA 59.597 45.833 0.00 0.00 0.00 2.74
5128 5288 4.498345 CGCCTCTGACCAAATCTCTACTAC 60.498 50.000 0.00 0.00 0.00 2.73
5129 5289 3.632604 CGCCTCTGACCAAATCTCTACTA 59.367 47.826 0.00 0.00 0.00 1.82
5130 5290 2.428890 CGCCTCTGACCAAATCTCTACT 59.571 50.000 0.00 0.00 0.00 2.57
5131 5291 2.427453 TCGCCTCTGACCAAATCTCTAC 59.573 50.000 0.00 0.00 0.00 2.59
5132 5292 2.735151 TCGCCTCTGACCAAATCTCTA 58.265 47.619 0.00 0.00 0.00 2.43
5133 5293 1.561643 TCGCCTCTGACCAAATCTCT 58.438 50.000 0.00 0.00 0.00 3.10
5134 5294 2.611225 ATCGCCTCTGACCAAATCTC 57.389 50.000 0.00 0.00 0.00 2.75
5135 5295 2.766263 TGTATCGCCTCTGACCAAATCT 59.234 45.455 0.00 0.00 0.00 2.40
5140 5300 1.327690 GGGTGTATCGCCTCTGACCA 61.328 60.000 0.00 0.00 33.98 4.02
5157 5317 7.601856 TGAGTAAGCAAACAAAATTATCAGGG 58.398 34.615 0.00 0.00 0.00 4.45
5158 5318 9.079833 CATGAGTAAGCAAACAAAATTATCAGG 57.920 33.333 0.00 0.00 0.00 3.86
5185 5347 7.081526 AGCAAATCAAAGCTACTACTTCATG 57.918 36.000 0.00 0.00 39.78 3.07
5198 5360 6.103997 AGCATTGAACCATAGCAAATCAAAG 58.896 36.000 0.00 0.00 34.09 2.77
5199 5361 6.040209 AGCATTGAACCATAGCAAATCAAA 57.960 33.333 0.00 0.00 34.09 2.69
5200 5362 5.664294 AGCATTGAACCATAGCAAATCAA 57.336 34.783 0.00 0.00 34.80 2.57
5201 5363 5.664294 AAGCATTGAACCATAGCAAATCA 57.336 34.783 0.00 0.00 0.00 2.57
5224 5386 3.741344 AGAAATGTGAGCACGAACTACAC 59.259 43.478 0.00 0.00 0.00 2.90
5242 5404 9.943163 GCATTAAACCAGCAATTTTAAAAGAAA 57.057 25.926 6.79 0.00 0.00 2.52
5243 5405 8.563732 GGCATTAAACCAGCAATTTTAAAAGAA 58.436 29.630 6.79 0.00 0.00 2.52
5244 5406 7.095439 CGGCATTAAACCAGCAATTTTAAAAGA 60.095 33.333 6.79 0.00 0.00 2.52
5245 5407 7.014702 CGGCATTAAACCAGCAATTTTAAAAG 58.985 34.615 6.79 0.00 0.00 2.27
5246 5408 6.073003 CCGGCATTAAACCAGCAATTTTAAAA 60.073 34.615 2.51 2.51 0.00 1.52
5247 5409 5.409826 CCGGCATTAAACCAGCAATTTTAAA 59.590 36.000 0.00 0.00 0.00 1.52
5248 5410 4.932200 CCGGCATTAAACCAGCAATTTTAA 59.068 37.500 0.00 0.00 0.00 1.52
5249 5411 4.220821 TCCGGCATTAAACCAGCAATTTTA 59.779 37.500 0.00 0.00 0.00 1.52
5250 5412 3.007398 TCCGGCATTAAACCAGCAATTTT 59.993 39.130 0.00 0.00 0.00 1.82
5251 5413 2.564947 TCCGGCATTAAACCAGCAATTT 59.435 40.909 0.00 0.00 0.00 1.82
5252 5414 2.175202 TCCGGCATTAAACCAGCAATT 58.825 42.857 0.00 0.00 0.00 2.32
5253 5415 1.846007 TCCGGCATTAAACCAGCAAT 58.154 45.000 0.00 0.00 0.00 3.56
5254 5416 1.748493 GATCCGGCATTAAACCAGCAA 59.252 47.619 0.00 0.00 0.00 3.91
5255 5417 1.340502 TGATCCGGCATTAAACCAGCA 60.341 47.619 0.00 0.00 0.00 4.41
5256 5418 1.065551 GTGATCCGGCATTAAACCAGC 59.934 52.381 0.00 0.00 0.00 4.85
5257 5419 2.364632 TGTGATCCGGCATTAAACCAG 58.635 47.619 0.00 0.00 0.00 4.00
5258 5420 2.498644 TGTGATCCGGCATTAAACCA 57.501 45.000 0.00 0.00 0.00 3.67
5259 5421 4.134563 AGTATGTGATCCGGCATTAAACC 58.865 43.478 0.00 0.00 0.00 3.27
5260 5422 5.751243 AAGTATGTGATCCGGCATTAAAC 57.249 39.130 0.00 0.00 0.00 2.01
5261 5423 5.883115 TGAAAGTATGTGATCCGGCATTAAA 59.117 36.000 0.00 0.00 0.00 1.52
5262 5424 5.432645 TGAAAGTATGTGATCCGGCATTAA 58.567 37.500 0.00 0.00 0.00 1.40
5263 5425 5.029807 TGAAAGTATGTGATCCGGCATTA 57.970 39.130 0.00 0.00 0.00 1.90
5264 5426 3.884895 TGAAAGTATGTGATCCGGCATT 58.115 40.909 0.00 0.00 0.00 3.56
5265 5427 3.558931 TGAAAGTATGTGATCCGGCAT 57.441 42.857 0.00 0.00 0.00 4.40
5266 5428 3.342377 TTGAAAGTATGTGATCCGGCA 57.658 42.857 0.00 0.00 0.00 5.69
5267 5429 4.695217 TTTTGAAAGTATGTGATCCGGC 57.305 40.909 0.00 0.00 0.00 6.13
5268 5430 6.435430 TCATTTTGAAAGTATGTGATCCGG 57.565 37.500 0.00 0.00 0.00 5.14
5269 5431 7.970061 ACATTCATTTTGAAAGTATGTGATCCG 59.030 33.333 0.00 0.00 40.12 4.18
5338 5500 1.064389 GCTGAACAGGGGCCTTAGAAT 60.064 52.381 0.84 0.00 0.00 2.40
5355 5517 7.903995 TTTTTAATCCAAAAATAGGCTGCTG 57.096 32.000 0.00 0.00 40.39 4.41
5400 5562 4.020662 GGGCCTGAAATGAACCATTTTACA 60.021 41.667 0.84 1.41 43.05 2.41
5409 5571 2.885113 GCGGGGCCTGAAATGAAC 59.115 61.111 18.84 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.