Multiple sequence alignment - TraesCS6D01G074700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G074700 chr6D 100.000 2423 0 0 1 2423 38227511 38225089 0.000000e+00 4475.0
1 TraesCS6D01G074700 chr6B 95.163 1468 53 6 559 2009 89139260 89137794 0.000000e+00 2302.0
2 TraesCS6D01G074700 chr6B 89.100 633 50 6 904 1533 89000327 88999711 0.000000e+00 769.0
3 TraesCS6D01G074700 chr6B 91.546 414 19 3 2010 2423 89137735 89137338 7.570000e-155 556.0
4 TraesCS6D01G074700 chr6B 87.595 395 45 2 1013 1403 89168591 89168197 2.840000e-124 455.0
5 TraesCS6D01G074700 chr6B 81.620 321 59 0 1055 1375 91005923 91006243 1.430000e-67 267.0
6 TraesCS6D01G074700 chr6B 82.249 169 25 4 1206 1370 90960607 90960774 9.030000e-30 141.0
7 TraesCS6D01G074700 chr6B 92.727 55 4 0 2305 2359 88998736 88998682 2.000000e-11 80.5
8 TraesCS6D01G074700 chr6A 92.863 1149 62 5 1015 2147 49769948 49768804 0.000000e+00 1650.0
9 TraesCS6D01G074700 chr6A 92.608 487 27 7 1 480 2840287 2840771 0.000000e+00 691.0
10 TraesCS6D01G074700 chr6A 83.418 392 59 4 1013 1401 49775397 49775009 2.290000e-95 359.0
11 TraesCS6D01G074700 chr1B 92.990 485 26 4 1 480 185545476 185545957 0.000000e+00 701.0
12 TraesCS6D01G074700 chr3B 92.784 485 25 8 1 479 75874327 75874807 0.000000e+00 693.0
13 TraesCS6D01G074700 chr3B 92.577 485 26 8 1 479 75839276 75839756 0.000000e+00 688.0
14 TraesCS6D01G074700 chr3B 92.547 483 27 7 1 477 816470301 816470780 0.000000e+00 684.0
15 TraesCS6D01G074700 chr3B 92.181 486 27 8 1 479 75811976 75812457 0.000000e+00 676.0
16 TraesCS6D01G074700 chr3A 89.979 469 38 4 16 479 650796590 650796126 4.460000e-167 597.0
17 TraesCS6D01G074700 chr7A 82.796 465 61 12 34 490 512345979 512346432 4.850000e-107 398.0
18 TraesCS6D01G074700 chr4B 82.090 469 68 12 15 476 659518720 659519179 1.050000e-103 387.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G074700 chr6D 38225089 38227511 2422 True 4475.00 4475 100.0000 1 2423 1 chr6D.!!$R1 2422
1 TraesCS6D01G074700 chr6B 89137338 89139260 1922 True 1429.00 2302 93.3545 559 2423 2 chr6B.!!$R3 1864
2 TraesCS6D01G074700 chr6B 88998682 89000327 1645 True 424.75 769 90.9135 904 2359 2 chr6B.!!$R2 1455
3 TraesCS6D01G074700 chr6A 49768804 49769948 1144 True 1650.00 1650 92.8630 1015 2147 1 chr6A.!!$R1 1132

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 503 0.030603 GGAGGGGAGGGTCAGAATCT 60.031 60.0 0.0 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 2094 0.105039 CCCCGTAGTGATTCAGAGCC 59.895 60.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.357796 TGCTATATTGAGCGAGATATATTTGC 57.642 34.615 0.00 0.00 45.99 3.68
27 28 7.981225 TGCTATATTGAGCGAGATATATTTGCA 59.019 33.333 7.31 0.00 45.99 4.08
28 29 8.820933 GCTATATTGAGCGAGATATATTTGCAA 58.179 33.333 0.00 0.00 31.57 4.08
30 31 8.783833 ATATTGAGCGAGATATATTTGCAACT 57.216 30.769 0.00 0.00 0.00 3.16
31 32 9.875691 ATATTGAGCGAGATATATTTGCAACTA 57.124 29.630 0.00 0.00 0.00 2.24
32 33 7.408132 TTGAGCGAGATATATTTGCAACTAC 57.592 36.000 0.00 0.00 0.00 2.73
33 34 6.749139 TGAGCGAGATATATTTGCAACTACT 58.251 36.000 0.00 0.00 0.00 2.57
34 35 6.642540 TGAGCGAGATATATTTGCAACTACTG 59.357 38.462 0.00 0.00 0.00 2.74
35 36 6.749139 AGCGAGATATATTTGCAACTACTGA 58.251 36.000 0.00 0.00 0.00 3.41
36 37 6.642950 AGCGAGATATATTTGCAACTACTGAC 59.357 38.462 0.00 0.00 0.00 3.51
37 38 6.399039 GCGAGATATATTTGCAACTACTGACG 60.399 42.308 0.00 3.66 0.00 4.35
38 39 6.856426 CGAGATATATTTGCAACTACTGACGA 59.144 38.462 0.00 0.00 0.00 4.20
39 40 7.539022 CGAGATATATTTGCAACTACTGACGAT 59.461 37.037 0.00 0.00 0.00 3.73
40 41 8.526218 AGATATATTTGCAACTACTGACGATG 57.474 34.615 0.00 0.00 0.00 3.84
41 42 8.360390 AGATATATTTGCAACTACTGACGATGA 58.640 33.333 0.00 0.00 0.00 2.92
42 43 9.144747 GATATATTTGCAACTACTGACGATGAT 57.855 33.333 0.00 0.00 0.00 2.45
43 44 4.926860 TTTGCAACTACTGACGATGATG 57.073 40.909 0.00 0.00 0.00 3.07
44 45 3.866883 TGCAACTACTGACGATGATGA 57.133 42.857 0.00 0.00 0.00 2.92
45 46 4.391405 TGCAACTACTGACGATGATGAT 57.609 40.909 0.00 0.00 0.00 2.45
46 47 5.514274 TGCAACTACTGACGATGATGATA 57.486 39.130 0.00 0.00 0.00 2.15
47 48 6.089249 TGCAACTACTGACGATGATGATAT 57.911 37.500 0.00 0.00 0.00 1.63
48 49 6.515832 TGCAACTACTGACGATGATGATATT 58.484 36.000 0.00 0.00 0.00 1.28
49 50 6.421801 TGCAACTACTGACGATGATGATATTG 59.578 38.462 0.00 0.00 0.00 1.90
50 51 6.422100 GCAACTACTGACGATGATGATATTGT 59.578 38.462 0.00 0.00 0.00 2.71
51 52 7.595130 GCAACTACTGACGATGATGATATTGTA 59.405 37.037 0.00 0.00 0.00 2.41
52 53 9.631452 CAACTACTGACGATGATGATATTGTAT 57.369 33.333 0.00 0.00 0.00 2.29
57 58 8.893727 ACTGACGATGATGATATTGTATATCGA 58.106 33.333 10.21 0.00 39.20 3.59
58 59 9.890352 CTGACGATGATGATATTGTATATCGAT 57.110 33.333 2.16 2.16 39.20 3.59
77 78 9.958234 ATATCGATTTCAATCATATAGGTCTCG 57.042 33.333 1.71 0.00 35.11 4.04
78 79 6.093404 TCGATTTCAATCATATAGGTCTCGC 58.907 40.000 0.62 0.00 35.11 5.03
79 80 5.863935 CGATTTCAATCATATAGGTCTCGCA 59.136 40.000 0.62 0.00 35.11 5.10
80 81 6.366061 CGATTTCAATCATATAGGTCTCGCAA 59.634 38.462 0.62 0.00 35.11 4.85
81 82 7.095649 CGATTTCAATCATATAGGTCTCGCAAA 60.096 37.037 0.62 0.00 35.11 3.68
82 83 7.482654 TTTCAATCATATAGGTCTCGCAAAG 57.517 36.000 0.00 0.00 0.00 2.77
83 84 5.541845 TCAATCATATAGGTCTCGCAAAGG 58.458 41.667 0.00 0.00 0.00 3.11
84 85 4.543590 ATCATATAGGTCTCGCAAAGGG 57.456 45.455 0.00 0.00 0.00 3.95
85 86 2.037251 TCATATAGGTCTCGCAAAGGGC 59.963 50.000 0.00 0.00 39.90 5.19
86 87 1.789523 TATAGGTCTCGCAAAGGGCT 58.210 50.000 0.00 0.00 41.67 5.19
87 88 0.912486 ATAGGTCTCGCAAAGGGCTT 59.088 50.000 0.00 0.00 41.67 4.35
88 89 0.690762 TAGGTCTCGCAAAGGGCTTT 59.309 50.000 0.00 0.00 41.67 3.51
89 90 0.178990 AGGTCTCGCAAAGGGCTTTT 60.179 50.000 0.00 0.00 41.67 2.27
90 91 1.073284 AGGTCTCGCAAAGGGCTTTTA 59.927 47.619 0.00 0.00 41.67 1.52
91 92 1.199327 GGTCTCGCAAAGGGCTTTTAC 59.801 52.381 0.00 0.00 41.67 2.01
92 93 1.199327 GTCTCGCAAAGGGCTTTTACC 59.801 52.381 0.00 0.00 41.67 2.85
93 94 1.073284 TCTCGCAAAGGGCTTTTACCT 59.927 47.619 0.00 0.00 41.67 3.08
94 95 1.468914 CTCGCAAAGGGCTTTTACCTC 59.531 52.381 0.00 0.00 41.67 3.85
95 96 0.168128 CGCAAAGGGCTTTTACCTCG 59.832 55.000 0.00 0.00 41.67 4.63
96 97 1.244816 GCAAAGGGCTTTTACCTCGT 58.755 50.000 0.00 0.00 37.35 4.18
97 98 1.199327 GCAAAGGGCTTTTACCTCGTC 59.801 52.381 0.00 0.00 37.35 4.20
98 99 1.463444 CAAAGGGCTTTTACCTCGTCG 59.537 52.381 0.00 0.00 37.35 5.12
99 100 0.971386 AAGGGCTTTTACCTCGTCGA 59.029 50.000 0.00 0.00 37.35 4.20
100 101 0.971386 AGGGCTTTTACCTCGTCGAA 59.029 50.000 0.00 0.00 31.01 3.71
101 102 1.067071 AGGGCTTTTACCTCGTCGAAG 60.067 52.381 0.00 0.00 31.01 3.79
102 103 1.337541 GGGCTTTTACCTCGTCGAAGT 60.338 52.381 1.52 1.52 0.00 3.01
103 104 1.725164 GGCTTTTACCTCGTCGAAGTG 59.275 52.381 6.75 0.00 0.00 3.16
104 105 1.725164 GCTTTTACCTCGTCGAAGTGG 59.275 52.381 16.38 16.38 0.00 4.00
105 106 2.865276 GCTTTTACCTCGTCGAAGTGGT 60.865 50.000 24.61 24.61 40.60 4.16
106 107 3.612479 GCTTTTACCTCGTCGAAGTGGTA 60.612 47.826 22.80 22.80 38.71 3.25
107 108 4.549458 CTTTTACCTCGTCGAAGTGGTAA 58.451 43.478 29.08 29.08 43.96 2.85
108 109 3.837213 TTACCTCGTCGAAGTGGTAAG 57.163 47.619 29.08 8.53 42.09 2.34
109 110 1.613836 ACCTCGTCGAAGTGGTAAGT 58.386 50.000 21.07 0.00 36.37 2.24
110 111 1.959282 ACCTCGTCGAAGTGGTAAGTT 59.041 47.619 21.07 0.00 36.37 2.66
111 112 2.363359 ACCTCGTCGAAGTGGTAAGTTT 59.637 45.455 21.07 0.00 36.37 2.66
112 113 3.181472 ACCTCGTCGAAGTGGTAAGTTTT 60.181 43.478 21.07 0.00 36.37 2.43
113 114 4.037923 ACCTCGTCGAAGTGGTAAGTTTTA 59.962 41.667 21.07 0.00 36.37 1.52
114 115 4.620184 CCTCGTCGAAGTGGTAAGTTTTAG 59.380 45.833 10.78 0.00 0.00 1.85
115 116 5.437289 TCGTCGAAGTGGTAAGTTTTAGA 57.563 39.130 0.00 0.00 0.00 2.10
116 117 6.017400 TCGTCGAAGTGGTAAGTTTTAGAT 57.983 37.500 0.00 0.00 0.00 1.98
117 118 6.449698 TCGTCGAAGTGGTAAGTTTTAGATT 58.550 36.000 0.00 0.00 0.00 2.40
118 119 6.925165 TCGTCGAAGTGGTAAGTTTTAGATTT 59.075 34.615 0.00 0.00 0.00 2.17
119 120 7.007697 CGTCGAAGTGGTAAGTTTTAGATTTG 58.992 38.462 0.00 0.00 0.00 2.32
120 121 7.306983 CGTCGAAGTGGTAAGTTTTAGATTTGT 60.307 37.037 0.00 0.00 0.00 2.83
121 122 8.981647 GTCGAAGTGGTAAGTTTTAGATTTGTA 58.018 33.333 0.00 0.00 0.00 2.41
122 123 9.715121 TCGAAGTGGTAAGTTTTAGATTTGTAT 57.285 29.630 0.00 0.00 0.00 2.29
123 124 9.968743 CGAAGTGGTAAGTTTTAGATTTGTATC 57.031 33.333 0.00 0.00 0.00 2.24
156 157 9.638176 AATTCTTTCACTTGATATCTATGCCTT 57.362 29.630 3.98 0.00 0.00 4.35
157 158 8.668510 TTCTTTCACTTGATATCTATGCCTTC 57.331 34.615 3.98 0.00 0.00 3.46
158 159 8.027524 TCTTTCACTTGATATCTATGCCTTCT 57.972 34.615 3.98 0.00 0.00 2.85
159 160 8.147058 TCTTTCACTTGATATCTATGCCTTCTC 58.853 37.037 3.98 0.00 0.00 2.87
160 161 7.609097 TTCACTTGATATCTATGCCTTCTCT 57.391 36.000 3.98 0.00 0.00 3.10
161 162 7.609097 TCACTTGATATCTATGCCTTCTCTT 57.391 36.000 3.98 0.00 0.00 2.85
162 163 8.712228 TCACTTGATATCTATGCCTTCTCTTA 57.288 34.615 3.98 0.00 0.00 2.10
163 164 9.319060 TCACTTGATATCTATGCCTTCTCTTAT 57.681 33.333 3.98 0.00 0.00 1.73
164 165 9.368674 CACTTGATATCTATGCCTTCTCTTATG 57.631 37.037 3.98 0.00 0.00 1.90
165 166 9.319060 ACTTGATATCTATGCCTTCTCTTATGA 57.681 33.333 3.98 0.00 0.00 2.15
191 192 9.671279 AAAATTTTCTTTTCATGTCTTGAAGGT 57.329 25.926 0.00 0.00 44.90 3.50
192 193 8.652810 AATTTTCTTTTCATGTCTTGAAGGTG 57.347 30.769 0.00 0.00 44.90 4.00
193 194 6.773976 TTTCTTTTCATGTCTTGAAGGTGT 57.226 33.333 0.00 0.00 44.90 4.16
194 195 6.773976 TTCTTTTCATGTCTTGAAGGTGTT 57.226 33.333 0.00 0.00 44.90 3.32
195 196 6.135290 TCTTTTCATGTCTTGAAGGTGTTG 57.865 37.500 0.00 0.00 44.90 3.33
196 197 4.916983 TTTCATGTCTTGAAGGTGTTGG 57.083 40.909 0.00 0.00 44.90 3.77
197 198 2.229792 TCATGTCTTGAAGGTGTTGGC 58.770 47.619 0.00 0.00 0.00 4.52
198 199 2.158623 TCATGTCTTGAAGGTGTTGGCT 60.159 45.455 0.00 0.00 0.00 4.75
199 200 1.967319 TGTCTTGAAGGTGTTGGCTC 58.033 50.000 0.00 0.00 0.00 4.70
200 201 1.490490 TGTCTTGAAGGTGTTGGCTCT 59.510 47.619 0.00 0.00 0.00 4.09
201 202 2.092429 TGTCTTGAAGGTGTTGGCTCTT 60.092 45.455 0.00 0.00 0.00 2.85
202 203 2.550180 GTCTTGAAGGTGTTGGCTCTTC 59.450 50.000 0.00 0.00 37.85 2.87
203 204 2.439507 TCTTGAAGGTGTTGGCTCTTCT 59.560 45.455 0.00 0.00 38.10 2.85
204 205 3.117888 TCTTGAAGGTGTTGGCTCTTCTT 60.118 43.478 0.00 0.00 38.10 2.52
205 206 2.851195 TGAAGGTGTTGGCTCTTCTTC 58.149 47.619 0.00 0.00 38.10 2.87
206 207 2.155279 GAAGGTGTTGGCTCTTCTTCC 58.845 52.381 0.00 0.00 35.37 3.46
207 208 1.140312 AGGTGTTGGCTCTTCTTCCA 58.860 50.000 0.00 0.00 0.00 3.53
208 209 1.202818 AGGTGTTGGCTCTTCTTCCAC 60.203 52.381 0.00 0.00 30.97 4.02
209 210 1.239347 GTGTTGGCTCTTCTTCCACC 58.761 55.000 0.00 0.00 30.97 4.61
210 211 0.250295 TGTTGGCTCTTCTTCCACCG 60.250 55.000 0.00 0.00 30.97 4.94
211 212 0.034896 GTTGGCTCTTCTTCCACCGA 59.965 55.000 0.00 0.00 30.97 4.69
212 213 0.984230 TTGGCTCTTCTTCCACCGAT 59.016 50.000 0.00 0.00 30.97 4.18
213 214 0.250234 TGGCTCTTCTTCCACCGATG 59.750 55.000 0.00 0.00 0.00 3.84
214 215 0.537188 GGCTCTTCTTCCACCGATGA 59.463 55.000 0.00 0.00 0.00 2.92
215 216 1.139853 GGCTCTTCTTCCACCGATGAT 59.860 52.381 0.00 0.00 0.00 2.45
216 217 2.208431 GCTCTTCTTCCACCGATGATG 58.792 52.381 0.00 0.00 0.00 3.07
217 218 2.159043 GCTCTTCTTCCACCGATGATGA 60.159 50.000 0.00 0.00 0.00 2.92
218 219 3.715495 CTCTTCTTCCACCGATGATGAG 58.285 50.000 0.00 0.00 37.74 2.90
219 220 2.432146 TCTTCTTCCACCGATGATGAGG 59.568 50.000 0.00 0.00 0.00 3.86
220 221 1.866015 TCTTCCACCGATGATGAGGT 58.134 50.000 0.00 0.00 42.34 3.85
221 222 2.187958 TCTTCCACCGATGATGAGGTT 58.812 47.619 0.00 0.00 39.00 3.50
222 223 3.371034 TCTTCCACCGATGATGAGGTTA 58.629 45.455 0.00 0.00 39.00 2.85
223 224 3.967326 TCTTCCACCGATGATGAGGTTAT 59.033 43.478 0.00 0.00 39.00 1.89
224 225 3.751479 TCCACCGATGATGAGGTTATG 57.249 47.619 0.00 0.00 39.00 1.90
225 226 3.038280 TCCACCGATGATGAGGTTATGT 58.962 45.455 0.00 0.00 39.00 2.29
226 227 3.133691 CCACCGATGATGAGGTTATGTG 58.866 50.000 0.00 0.00 39.00 3.21
227 228 3.181466 CCACCGATGATGAGGTTATGTGA 60.181 47.826 0.00 0.00 39.00 3.58
228 229 3.804325 CACCGATGATGAGGTTATGTGAC 59.196 47.826 0.00 0.00 39.00 3.67
229 230 3.052745 CCGATGATGAGGTTATGTGACG 58.947 50.000 0.00 0.00 0.00 4.35
230 231 2.472861 CGATGATGAGGTTATGTGACGC 59.527 50.000 0.00 0.00 0.00 5.19
231 232 3.457234 GATGATGAGGTTATGTGACGCA 58.543 45.455 0.00 0.00 0.00 5.24
232 233 2.616960 TGATGAGGTTATGTGACGCAC 58.383 47.619 0.00 3.44 34.56 5.34
233 234 2.233676 TGATGAGGTTATGTGACGCACT 59.766 45.455 10.54 0.00 35.11 4.40
234 235 2.078849 TGAGGTTATGTGACGCACTG 57.921 50.000 10.54 0.00 35.11 3.66
235 236 1.616374 TGAGGTTATGTGACGCACTGA 59.384 47.619 10.54 0.00 35.11 3.41
236 237 2.233676 TGAGGTTATGTGACGCACTGAT 59.766 45.455 10.54 1.32 35.11 2.90
237 238 2.604914 GAGGTTATGTGACGCACTGATG 59.395 50.000 10.54 0.00 35.11 3.07
238 239 2.233676 AGGTTATGTGACGCACTGATGA 59.766 45.455 10.54 0.00 35.11 2.92
239 240 3.000041 GGTTATGTGACGCACTGATGAA 59.000 45.455 10.54 0.00 35.11 2.57
240 241 3.062639 GGTTATGTGACGCACTGATGAAG 59.937 47.826 10.54 0.00 35.11 3.02
241 242 1.730501 ATGTGACGCACTGATGAAGG 58.269 50.000 10.54 0.00 35.11 3.46
242 243 0.678950 TGTGACGCACTGATGAAGGA 59.321 50.000 10.54 0.00 35.11 3.36
243 244 1.276138 TGTGACGCACTGATGAAGGAT 59.724 47.619 10.54 0.00 35.11 3.24
244 245 2.289631 TGTGACGCACTGATGAAGGATT 60.290 45.455 10.54 0.00 35.11 3.01
245 246 2.094894 GTGACGCACTGATGAAGGATTG 59.905 50.000 3.20 0.00 0.00 2.67
246 247 2.028203 TGACGCACTGATGAAGGATTGA 60.028 45.455 0.00 0.00 0.00 2.57
247 248 3.201290 GACGCACTGATGAAGGATTGAT 58.799 45.455 0.00 0.00 0.00 2.57
248 249 3.201290 ACGCACTGATGAAGGATTGATC 58.799 45.455 0.00 0.00 39.28 2.92
249 250 3.118482 ACGCACTGATGAAGGATTGATCT 60.118 43.478 0.00 0.00 39.57 2.75
250 251 3.247886 CGCACTGATGAAGGATTGATCTG 59.752 47.826 0.00 0.00 39.57 2.90
251 252 3.564644 GCACTGATGAAGGATTGATCTGG 59.435 47.826 0.00 0.00 40.77 3.86
252 253 4.778579 CACTGATGAAGGATTGATCTGGT 58.221 43.478 0.00 0.00 40.77 4.00
253 254 5.685861 GCACTGATGAAGGATTGATCTGGTA 60.686 44.000 0.00 0.00 40.77 3.25
254 255 5.757320 CACTGATGAAGGATTGATCTGGTAC 59.243 44.000 0.00 0.00 40.77 3.34
255 256 5.664908 ACTGATGAAGGATTGATCTGGTACT 59.335 40.000 0.00 0.00 40.77 2.73
256 257 6.157645 ACTGATGAAGGATTGATCTGGTACTT 59.842 38.462 0.00 0.00 40.77 2.24
257 258 6.962182 TGATGAAGGATTGATCTGGTACTTT 58.038 36.000 0.00 0.00 39.57 2.66
258 259 7.405292 TGATGAAGGATTGATCTGGTACTTTT 58.595 34.615 0.00 0.00 39.57 2.27
259 260 7.890127 TGATGAAGGATTGATCTGGTACTTTTT 59.110 33.333 0.00 0.00 39.57 1.94
289 290 8.783093 TCACATATTGTTCTTTGTAGTTCTTGG 58.217 33.333 0.00 0.00 0.00 3.61
290 291 7.538678 CACATATTGTTCTTTGTAGTTCTTGGC 59.461 37.037 0.00 0.00 0.00 4.52
291 292 7.230510 ACATATTGTTCTTTGTAGTTCTTGGCA 59.769 33.333 0.00 0.00 0.00 4.92
292 293 6.655078 ATTGTTCTTTGTAGTTCTTGGCAT 57.345 33.333 0.00 0.00 0.00 4.40
293 294 5.437289 TGTTCTTTGTAGTTCTTGGCATG 57.563 39.130 0.00 0.00 0.00 4.06
294 295 4.887071 TGTTCTTTGTAGTTCTTGGCATGT 59.113 37.500 0.00 0.00 0.00 3.21
295 296 5.359576 TGTTCTTTGTAGTTCTTGGCATGTT 59.640 36.000 0.00 0.00 0.00 2.71
296 297 6.127479 TGTTCTTTGTAGTTCTTGGCATGTTT 60.127 34.615 0.00 0.00 0.00 2.83
297 298 6.463995 TCTTTGTAGTTCTTGGCATGTTTT 57.536 33.333 0.00 0.00 0.00 2.43
298 299 6.872920 TCTTTGTAGTTCTTGGCATGTTTTT 58.127 32.000 0.00 0.00 0.00 1.94
299 300 8.001881 TCTTTGTAGTTCTTGGCATGTTTTTA 57.998 30.769 0.00 0.00 0.00 1.52
300 301 8.637986 TCTTTGTAGTTCTTGGCATGTTTTTAT 58.362 29.630 0.00 0.00 0.00 1.40
301 302 8.810652 TTTGTAGTTCTTGGCATGTTTTTATC 57.189 30.769 0.00 0.00 0.00 1.75
302 303 7.759489 TGTAGTTCTTGGCATGTTTTTATCT 57.241 32.000 0.00 0.00 0.00 1.98
303 304 8.856153 TGTAGTTCTTGGCATGTTTTTATCTA 57.144 30.769 0.00 0.00 0.00 1.98
304 305 9.461312 TGTAGTTCTTGGCATGTTTTTATCTAT 57.539 29.630 0.00 0.00 0.00 1.98
309 310 9.995003 TTCTTGGCATGTTTTTATCTATTTTGT 57.005 25.926 0.00 0.00 0.00 2.83
310 311 9.995003 TCTTGGCATGTTTTTATCTATTTTGTT 57.005 25.926 0.00 0.00 0.00 2.83
312 313 9.553064 TTGGCATGTTTTTATCTATTTTGTTGT 57.447 25.926 0.00 0.00 0.00 3.32
326 327 9.853555 TCTATTTTGTTGTACCATTAAGCATTG 57.146 29.630 0.00 0.00 0.00 2.82
327 328 9.853555 CTATTTTGTTGTACCATTAAGCATTGA 57.146 29.630 0.00 0.00 0.00 2.57
328 329 8.761575 ATTTTGTTGTACCATTAAGCATTGAG 57.238 30.769 0.00 0.00 0.00 3.02
329 330 5.309323 TGTTGTACCATTAAGCATTGAGC 57.691 39.130 0.00 0.00 46.19 4.26
351 352 8.911662 TGAGCTTAAATTCTAAATTTTTCGTGC 58.088 29.630 0.00 2.76 0.00 5.34
352 353 8.810652 AGCTTAAATTCTAAATTTTTCGTGCA 57.189 26.923 0.00 0.00 0.00 4.57
353 354 9.255304 AGCTTAAATTCTAAATTTTTCGTGCAA 57.745 25.926 0.00 0.00 0.00 4.08
359 360 9.474920 AATTCTAAATTTTTCGTGCAATTGAGA 57.525 25.926 10.34 2.00 30.72 3.27
360 361 7.851822 TCTAAATTTTTCGTGCAATTGAGAC 57.148 32.000 10.34 3.77 28.49 3.36
361 362 7.421599 TCTAAATTTTTCGTGCAATTGAGACA 58.578 30.769 10.34 0.00 28.49 3.41
362 363 8.081633 TCTAAATTTTTCGTGCAATTGAGACAT 58.918 29.630 10.34 0.00 28.49 3.06
363 364 9.340695 CTAAATTTTTCGTGCAATTGAGACATA 57.659 29.630 10.34 0.00 0.00 2.29
364 365 8.761575 AAATTTTTCGTGCAATTGAGACATAT 57.238 26.923 10.34 0.00 0.00 1.78
365 366 8.761575 AATTTTTCGTGCAATTGAGACATATT 57.238 26.923 10.34 3.08 0.00 1.28
366 367 8.761575 ATTTTTCGTGCAATTGAGACATATTT 57.238 26.923 10.34 0.00 0.00 1.40
367 368 8.586570 TTTTTCGTGCAATTGAGACATATTTT 57.413 26.923 10.34 0.00 0.00 1.82
368 369 7.565450 TTTCGTGCAATTGAGACATATTTTG 57.435 32.000 10.34 0.00 0.00 2.44
369 370 6.252967 TCGTGCAATTGAGACATATTTTGT 57.747 33.333 10.34 0.00 42.79 2.83
370 371 7.371126 TCGTGCAATTGAGACATATTTTGTA 57.629 32.000 10.34 0.00 39.18 2.41
371 372 7.984391 TCGTGCAATTGAGACATATTTTGTAT 58.016 30.769 10.34 0.00 39.18 2.29
372 373 7.909641 TCGTGCAATTGAGACATATTTTGTATG 59.090 33.333 10.34 0.00 39.18 2.39
373 374 7.166307 CGTGCAATTGAGACATATTTTGTATGG 59.834 37.037 10.34 0.00 39.18 2.74
374 375 7.436080 GTGCAATTGAGACATATTTTGTATGGG 59.564 37.037 10.34 0.00 39.18 4.00
375 376 6.925165 GCAATTGAGACATATTTTGTATGGGG 59.075 38.462 10.34 0.00 39.18 4.96
376 377 7.417797 GCAATTGAGACATATTTTGTATGGGGT 60.418 37.037 10.34 0.00 39.18 4.95
377 378 8.477256 CAATTGAGACATATTTTGTATGGGGTT 58.523 33.333 0.00 0.00 39.18 4.11
378 379 8.608185 ATTGAGACATATTTTGTATGGGGTTT 57.392 30.769 0.76 0.00 39.18 3.27
379 380 7.639113 TGAGACATATTTTGTATGGGGTTTC 57.361 36.000 0.76 0.00 39.18 2.78
380 381 7.410174 TGAGACATATTTTGTATGGGGTTTCT 58.590 34.615 0.76 0.00 39.18 2.52
381 382 7.893302 TGAGACATATTTTGTATGGGGTTTCTT 59.107 33.333 0.76 0.00 39.18 2.52
382 383 8.664669 AGACATATTTTGTATGGGGTTTCTTT 57.335 30.769 0.76 0.00 39.18 2.52
383 384 9.100197 AGACATATTTTGTATGGGGTTTCTTTT 57.900 29.630 0.76 0.00 39.18 2.27
388 389 7.619512 TTTTGTATGGGGTTTCTTTTATGGT 57.380 32.000 0.00 0.00 0.00 3.55
389 390 8.722622 TTTTGTATGGGGTTTCTTTTATGGTA 57.277 30.769 0.00 0.00 0.00 3.25
390 391 7.948034 TTGTATGGGGTTTCTTTTATGGTAG 57.052 36.000 0.00 0.00 0.00 3.18
391 392 5.889289 TGTATGGGGTTTCTTTTATGGTAGC 59.111 40.000 0.00 0.00 0.00 3.58
392 393 4.668138 TGGGGTTTCTTTTATGGTAGCT 57.332 40.909 0.00 0.00 0.00 3.32
393 394 5.782677 TGGGGTTTCTTTTATGGTAGCTA 57.217 39.130 0.00 0.00 0.00 3.32
394 395 5.751586 TGGGGTTTCTTTTATGGTAGCTAG 58.248 41.667 0.00 0.00 0.00 3.42
395 396 5.489637 TGGGGTTTCTTTTATGGTAGCTAGA 59.510 40.000 0.00 0.00 0.00 2.43
396 397 6.012333 TGGGGTTTCTTTTATGGTAGCTAGAA 60.012 38.462 0.00 0.00 0.00 2.10
397 398 6.542735 GGGGTTTCTTTTATGGTAGCTAGAAG 59.457 42.308 0.00 0.00 0.00 2.85
398 399 6.038382 GGGTTTCTTTTATGGTAGCTAGAAGC 59.962 42.308 0.00 0.00 42.84 3.86
399 400 6.038382 GGTTTCTTTTATGGTAGCTAGAAGCC 59.962 42.308 8.23 8.23 43.77 4.35
400 401 6.561519 TTCTTTTATGGTAGCTAGAAGCCT 57.438 37.500 0.00 0.00 43.77 4.58
401 402 6.561519 TCTTTTATGGTAGCTAGAAGCCTT 57.438 37.500 0.00 0.00 43.77 4.35
402 403 7.670605 TCTTTTATGGTAGCTAGAAGCCTTA 57.329 36.000 0.00 0.00 43.77 2.69
403 404 8.263854 TCTTTTATGGTAGCTAGAAGCCTTAT 57.736 34.615 0.00 0.00 43.77 1.73
404 405 8.150945 TCTTTTATGGTAGCTAGAAGCCTTATG 58.849 37.037 0.00 0.00 43.77 1.90
405 406 4.899352 ATGGTAGCTAGAAGCCTTATGG 57.101 45.455 0.00 0.00 43.77 2.74
406 407 3.923648 TGGTAGCTAGAAGCCTTATGGA 58.076 45.455 0.00 0.00 43.77 3.41
407 408 4.493618 TGGTAGCTAGAAGCCTTATGGAT 58.506 43.478 0.00 0.00 43.77 3.41
408 409 4.284490 TGGTAGCTAGAAGCCTTATGGATG 59.716 45.833 0.00 0.00 43.77 3.51
409 410 4.284746 GGTAGCTAGAAGCCTTATGGATGT 59.715 45.833 0.00 0.00 43.77 3.06
410 411 5.221742 GGTAGCTAGAAGCCTTATGGATGTT 60.222 44.000 0.00 0.00 43.77 2.71
411 412 6.014499 GGTAGCTAGAAGCCTTATGGATGTTA 60.014 42.308 0.00 0.00 43.77 2.41
412 413 6.500589 AGCTAGAAGCCTTATGGATGTTAA 57.499 37.500 0.00 0.00 43.77 2.01
413 414 6.900194 AGCTAGAAGCCTTATGGATGTTAAA 58.100 36.000 0.00 0.00 43.77 1.52
414 415 7.521669 AGCTAGAAGCCTTATGGATGTTAAAT 58.478 34.615 0.00 0.00 43.77 1.40
415 416 8.001292 AGCTAGAAGCCTTATGGATGTTAAATT 58.999 33.333 0.00 0.00 43.77 1.82
416 417 8.633561 GCTAGAAGCCTTATGGATGTTAAATTT 58.366 33.333 0.00 0.00 34.48 1.82
462 463 4.722700 GCCGAGGGCTTGCTCCAA 62.723 66.667 0.00 0.00 46.69 3.53
463 464 2.273449 CCGAGGGCTTGCTCCAAT 59.727 61.111 0.00 0.00 0.00 3.16
464 465 1.821332 CCGAGGGCTTGCTCCAATC 60.821 63.158 0.00 0.00 0.00 2.67
465 466 1.821332 CGAGGGCTTGCTCCAATCC 60.821 63.158 0.00 0.00 0.00 3.01
466 467 1.611965 GAGGGCTTGCTCCAATCCT 59.388 57.895 0.00 0.00 31.20 3.24
467 468 0.750911 GAGGGCTTGCTCCAATCCTG 60.751 60.000 5.22 0.00 31.20 3.86
468 469 1.755783 GGGCTTGCTCCAATCCTGG 60.756 63.158 0.00 0.00 45.08 4.45
469 470 2.421399 GGCTTGCTCCAATCCTGGC 61.421 63.158 0.00 0.00 43.17 4.85
470 471 1.379576 GCTTGCTCCAATCCTGGCT 60.380 57.895 0.00 0.00 43.17 4.75
471 472 1.382692 GCTTGCTCCAATCCTGGCTC 61.383 60.000 0.00 0.00 43.17 4.70
472 473 0.750911 CTTGCTCCAATCCTGGCTCC 60.751 60.000 0.00 0.00 43.17 4.70
473 474 2.203126 GCTCCAATCCTGGCTCCG 60.203 66.667 0.00 0.00 43.17 4.63
474 475 2.203126 CTCCAATCCTGGCTCCGC 60.203 66.667 0.00 0.00 43.17 5.54
490 491 4.741239 GCCACTGGAGGGAGGGGA 62.741 72.222 0.00 0.00 39.11 4.81
491 492 2.366167 CCACTGGAGGGAGGGGAG 60.366 72.222 0.00 0.00 39.11 4.30
492 493 2.366167 CACTGGAGGGAGGGGAGG 60.366 72.222 0.00 0.00 0.00 4.30
493 494 3.700350 ACTGGAGGGAGGGGAGGG 61.700 72.222 0.00 0.00 0.00 4.30
494 495 3.700350 CTGGAGGGAGGGGAGGGT 61.700 72.222 0.00 0.00 0.00 4.34
495 496 3.695825 TGGAGGGAGGGGAGGGTC 61.696 72.222 0.00 0.00 0.00 4.46
496 497 3.695825 GGAGGGAGGGGAGGGTCA 61.696 72.222 0.00 0.00 0.00 4.02
497 498 2.041405 GAGGGAGGGGAGGGTCAG 60.041 72.222 0.00 0.00 0.00 3.51
498 499 2.540910 AGGGAGGGGAGGGTCAGA 60.541 66.667 0.00 0.00 0.00 3.27
499 500 2.182858 GAGGGAGGGGAGGGTCAGAA 62.183 65.000 0.00 0.00 0.00 3.02
500 501 1.004891 GGGAGGGGAGGGTCAGAAT 59.995 63.158 0.00 0.00 0.00 2.40
501 502 1.057275 GGGAGGGGAGGGTCAGAATC 61.057 65.000 0.00 0.00 0.00 2.52
502 503 0.030603 GGAGGGGAGGGTCAGAATCT 60.031 60.000 0.00 0.00 0.00 2.40
503 504 1.626631 GGAGGGGAGGGTCAGAATCTT 60.627 57.143 0.00 0.00 0.00 2.40
504 505 1.488393 GAGGGGAGGGTCAGAATCTTG 59.512 57.143 0.00 0.00 0.00 3.02
505 506 0.548510 GGGGAGGGTCAGAATCTTGG 59.451 60.000 0.00 0.00 0.00 3.61
506 507 1.290134 GGGAGGGTCAGAATCTTGGT 58.710 55.000 0.00 0.00 0.00 3.67
507 508 1.636003 GGGAGGGTCAGAATCTTGGTT 59.364 52.381 0.00 0.00 0.00 3.67
508 509 2.844348 GGGAGGGTCAGAATCTTGGTTA 59.156 50.000 0.00 0.00 0.00 2.85
509 510 3.370633 GGGAGGGTCAGAATCTTGGTTAC 60.371 52.174 0.00 0.00 0.00 2.50
510 511 3.370633 GGAGGGTCAGAATCTTGGTTACC 60.371 52.174 0.00 0.00 0.00 2.85
511 512 3.256704 AGGGTCAGAATCTTGGTTACCA 58.743 45.455 0.00 0.00 0.00 3.25
512 513 3.852578 AGGGTCAGAATCTTGGTTACCAT 59.147 43.478 4.38 0.00 31.53 3.55
513 514 3.947834 GGGTCAGAATCTTGGTTACCATG 59.052 47.826 4.38 8.04 31.53 3.66
514 515 3.947834 GGTCAGAATCTTGGTTACCATGG 59.052 47.826 11.19 11.19 31.53 3.66
515 516 3.947834 GTCAGAATCTTGGTTACCATGGG 59.052 47.826 18.09 5.52 31.53 4.00
516 517 3.053693 TCAGAATCTTGGTTACCATGGGG 60.054 47.826 18.09 3.28 41.29 4.96
517 518 3.053693 CAGAATCTTGGTTACCATGGGGA 60.054 47.826 18.09 0.00 38.05 4.81
518 519 3.203040 AGAATCTTGGTTACCATGGGGAG 59.797 47.826 18.09 5.66 38.05 4.30
519 520 2.053747 TCTTGGTTACCATGGGGAGT 57.946 50.000 18.09 0.00 38.05 3.85
520 521 1.633432 TCTTGGTTACCATGGGGAGTG 59.367 52.381 18.09 0.00 38.05 3.51
521 522 1.633432 CTTGGTTACCATGGGGAGTGA 59.367 52.381 18.09 0.00 38.05 3.41
522 523 1.748732 TGGTTACCATGGGGAGTGAA 58.251 50.000 18.09 0.00 38.05 3.18
523 524 2.283834 TGGTTACCATGGGGAGTGAAT 58.716 47.619 18.09 0.00 38.05 2.57
524 525 3.465832 TGGTTACCATGGGGAGTGAATA 58.534 45.455 18.09 0.00 38.05 1.75
525 526 3.201266 TGGTTACCATGGGGAGTGAATAC 59.799 47.826 18.09 0.00 38.05 1.89
526 527 3.434596 GGTTACCATGGGGAGTGAATACC 60.435 52.174 18.09 3.25 38.05 2.73
527 528 2.286935 ACCATGGGGAGTGAATACCT 57.713 50.000 18.09 0.00 38.05 3.08
528 529 2.573463 ACCATGGGGAGTGAATACCTT 58.427 47.619 18.09 0.00 38.05 3.50
529 530 2.926329 ACCATGGGGAGTGAATACCTTT 59.074 45.455 18.09 0.00 38.05 3.11
530 531 3.336694 ACCATGGGGAGTGAATACCTTTT 59.663 43.478 18.09 0.00 38.05 2.27
531 532 4.202781 ACCATGGGGAGTGAATACCTTTTT 60.203 41.667 18.09 0.00 38.05 1.94
532 533 4.402474 CCATGGGGAGTGAATACCTTTTTC 59.598 45.833 2.85 0.00 35.59 2.29
533 534 3.681593 TGGGGAGTGAATACCTTTTTCG 58.318 45.455 0.00 0.00 29.30 3.46
534 535 3.328343 TGGGGAGTGAATACCTTTTTCGA 59.672 43.478 0.00 0.00 29.30 3.71
535 536 3.939592 GGGGAGTGAATACCTTTTTCGAG 59.060 47.826 0.00 0.00 29.30 4.04
536 537 4.323257 GGGGAGTGAATACCTTTTTCGAGA 60.323 45.833 0.00 0.00 29.30 4.04
537 538 5.429130 GGGAGTGAATACCTTTTTCGAGAT 58.571 41.667 0.00 0.00 0.00 2.75
538 539 5.294552 GGGAGTGAATACCTTTTTCGAGATG 59.705 44.000 0.00 0.00 0.00 2.90
539 540 5.875359 GGAGTGAATACCTTTTTCGAGATGT 59.125 40.000 0.00 0.00 0.00 3.06
540 541 7.039882 GGAGTGAATACCTTTTTCGAGATGTA 58.960 38.462 0.00 0.00 0.00 2.29
541 542 7.711339 GGAGTGAATACCTTTTTCGAGATGTAT 59.289 37.037 0.00 0.00 0.00 2.29
542 543 8.425577 AGTGAATACCTTTTTCGAGATGTATG 57.574 34.615 0.00 0.00 0.00 2.39
543 544 7.495934 AGTGAATACCTTTTTCGAGATGTATGG 59.504 37.037 0.00 0.00 0.00 2.74
544 545 7.280205 GTGAATACCTTTTTCGAGATGTATGGT 59.720 37.037 0.00 0.00 0.00 3.55
545 546 7.827236 TGAATACCTTTTTCGAGATGTATGGTT 59.173 33.333 0.00 0.00 0.00 3.67
546 547 7.787725 ATACCTTTTTCGAGATGTATGGTTC 57.212 36.000 0.00 0.00 0.00 3.62
547 548 4.941873 ACCTTTTTCGAGATGTATGGTTCC 59.058 41.667 0.00 0.00 0.00 3.62
548 549 4.941263 CCTTTTTCGAGATGTATGGTTCCA 59.059 41.667 0.00 0.00 0.00 3.53
549 550 5.590259 CCTTTTTCGAGATGTATGGTTCCAT 59.410 40.000 9.37 9.37 0.00 3.41
550 551 6.435430 TTTTTCGAGATGTATGGTTCCATG 57.565 37.500 13.86 0.00 0.00 3.66
551 552 3.751479 TCGAGATGTATGGTTCCATGG 57.249 47.619 4.97 4.97 0.00 3.66
552 553 2.146342 CGAGATGTATGGTTCCATGGC 58.854 52.381 6.96 7.67 0.00 4.40
553 554 2.224378 CGAGATGTATGGTTCCATGGCT 60.224 50.000 6.96 6.07 0.00 4.75
554 555 3.144506 GAGATGTATGGTTCCATGGCTG 58.855 50.000 6.96 0.00 0.00 4.85
555 556 1.610522 GATGTATGGTTCCATGGCTGC 59.389 52.381 6.96 0.00 0.00 5.25
556 557 0.747644 TGTATGGTTCCATGGCTGCG 60.748 55.000 6.96 0.00 0.00 5.18
557 558 1.823470 TATGGTTCCATGGCTGCGC 60.823 57.895 6.96 0.00 0.00 6.09
567 568 0.319040 ATGGCTGCGCATACGAGTAG 60.319 55.000 12.24 0.00 43.93 2.57
604 605 1.419922 CGGTCAGTGCGTTGCATAC 59.580 57.895 0.00 0.00 41.91 2.39
661 662 4.742201 GAGGCTGGCTCGCACGAA 62.742 66.667 15.80 0.00 0.00 3.85
790 803 9.542462 AATAAATGCGCTAATACACTTCTAGAA 57.458 29.630 9.73 4.81 0.00 2.10
791 804 7.843490 AAATGCGCTAATACACTTCTAGAAA 57.157 32.000 9.73 0.00 0.00 2.52
818 834 3.562557 GGAAATGCAAATTCATGATGGCC 59.437 43.478 15.10 0.00 0.00 5.36
823 839 0.748450 AAATTCATGATGGCCCAGCG 59.252 50.000 0.00 0.00 0.00 5.18
845 861 5.675444 GCGTTTACCTTTTTGCGACTATATG 59.325 40.000 0.00 0.00 0.00 1.78
852 868 2.526304 TTGCGACTATATGAGCCCAC 57.474 50.000 0.00 0.00 0.00 4.61
855 871 1.613925 GCGACTATATGAGCCCACAGA 59.386 52.381 0.00 0.00 0.00 3.41
928 944 0.101399 CGTTCGCATCTAGCCTCTGT 59.899 55.000 0.00 0.00 41.38 3.41
941 957 2.300437 AGCCTCTGTTTGTAGTCACTCC 59.700 50.000 0.00 0.00 0.00 3.85
1099 1148 1.534476 TACCACTCCAAGGGCGACA 60.534 57.895 0.00 0.00 0.00 4.35
1175 1224 3.145228 GCCTCTGGCTCTACAACAC 57.855 57.895 0.73 0.00 46.69 3.32
1177 1226 1.270839 GCCTCTGGCTCTACAACACAA 60.271 52.381 0.73 0.00 46.69 3.33
1182 1231 0.882927 GGCTCTACAACACAACGGCA 60.883 55.000 0.00 0.00 0.00 5.69
1278 1327 3.731728 ATGGTCATGGGCACGGCT 61.732 61.111 0.00 0.00 0.00 5.52
1835 2094 4.778143 GCCACCGGTGTAGCCCAG 62.778 72.222 31.80 16.29 0.00 4.45
1895 2155 0.957395 AGACGCATGGAGTTTGCCAG 60.957 55.000 0.00 0.00 42.15 4.85
2084 2430 5.643379 AATAATGAATTGCGTGGTTCAGT 57.357 34.783 5.14 4.92 37.72 3.41
2088 2434 3.206964 TGAATTGCGTGGTTCAGTAACA 58.793 40.909 0.00 0.00 37.34 2.41
2102 2448 2.668457 CAGTAACAAGCGTGTGATCTCC 59.332 50.000 5.91 0.00 38.27 3.71
2125 2562 5.594725 CCTATGTCTCTGCAGTCCTTTACTA 59.405 44.000 14.67 0.00 35.76 1.82
2139 2576 7.957484 CAGTCCTTTACTATTTTGAATCACACG 59.043 37.037 0.00 0.00 35.76 4.49
2156 2593 3.874873 GCAAGGCGCCAAATTTCC 58.125 55.556 31.54 0.00 32.94 3.13
2157 2594 1.293179 GCAAGGCGCCAAATTTCCT 59.707 52.632 31.54 0.76 32.94 3.36
2158 2595 0.320683 GCAAGGCGCCAAATTTCCTT 60.321 50.000 31.54 8.56 39.35 3.36
2159 2596 1.431496 CAAGGCGCCAAATTTCCTTG 58.569 50.000 31.54 17.61 46.33 3.61
2231 2668 1.231958 TTGGAAACGTTAGCGCCTGG 61.232 55.000 2.29 0.00 42.83 4.45
2232 2669 2.479198 GAAACGTTAGCGCCTGGC 59.521 61.111 9.11 9.11 42.83 4.85
2267 2704 5.104562 GGTTGTCCCTAACTTTTTCTTCG 57.895 43.478 0.00 0.00 0.00 3.79
2365 2802 0.307760 CAGAACTTTCCGGTGTGCAC 59.692 55.000 10.75 10.75 0.00 4.57
2369 2806 1.278637 CTTTCCGGTGTGCACGTTC 59.721 57.895 13.13 5.17 0.00 3.95
2371 2808 4.953868 TCCGGTGTGCACGTTCCG 62.954 66.667 28.48 28.48 42.22 4.30
2375 2812 2.025418 GGTGTGCACGTTCCGGTAG 61.025 63.158 13.13 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.820933 GCAAATATATCTCGCTCAATATAGCAA 58.179 33.333 0.00 0.00 42.91 3.91
1 2 7.981225 TGCAAATATATCTCGCTCAATATAGCA 59.019 33.333 0.00 0.00 42.91 3.49
2 3 8.357796 TGCAAATATATCTCGCTCAATATAGC 57.642 34.615 0.00 0.00 39.21 2.97
5 6 8.783833 AGTTGCAAATATATCTCGCTCAATAT 57.216 30.769 0.00 0.00 0.00 1.28
6 7 9.140286 GTAGTTGCAAATATATCTCGCTCAATA 57.860 33.333 10.15 0.00 0.00 1.90
7 8 7.875041 AGTAGTTGCAAATATATCTCGCTCAAT 59.125 33.333 10.15 0.00 0.00 2.57
8 9 7.169813 CAGTAGTTGCAAATATATCTCGCTCAA 59.830 37.037 10.15 0.00 0.00 3.02
9 10 6.642540 CAGTAGTTGCAAATATATCTCGCTCA 59.357 38.462 10.15 0.00 0.00 4.26
10 11 6.863645 TCAGTAGTTGCAAATATATCTCGCTC 59.136 38.462 10.15 0.00 0.00 5.03
11 12 6.642950 GTCAGTAGTTGCAAATATATCTCGCT 59.357 38.462 10.15 0.00 0.00 4.93
12 13 6.399039 CGTCAGTAGTTGCAAATATATCTCGC 60.399 42.308 10.15 0.00 0.00 5.03
13 14 6.856426 TCGTCAGTAGTTGCAAATATATCTCG 59.144 38.462 10.15 11.21 0.00 4.04
14 15 8.642885 CATCGTCAGTAGTTGCAAATATATCTC 58.357 37.037 10.15 0.00 0.00 2.75
15 16 8.360390 TCATCGTCAGTAGTTGCAAATATATCT 58.640 33.333 10.15 0.00 0.00 1.98
16 17 8.520835 TCATCGTCAGTAGTTGCAAATATATC 57.479 34.615 10.15 0.00 0.00 1.63
17 18 8.929746 CATCATCGTCAGTAGTTGCAAATATAT 58.070 33.333 10.15 0.00 0.00 0.86
18 19 8.141268 TCATCATCGTCAGTAGTTGCAAATATA 58.859 33.333 10.15 0.00 0.00 0.86
19 20 6.986231 TCATCATCGTCAGTAGTTGCAAATAT 59.014 34.615 10.15 0.00 0.00 1.28
20 21 6.337356 TCATCATCGTCAGTAGTTGCAAATA 58.663 36.000 0.00 0.00 0.00 1.40
21 22 5.178061 TCATCATCGTCAGTAGTTGCAAAT 58.822 37.500 4.23 4.23 0.00 2.32
22 23 4.565022 TCATCATCGTCAGTAGTTGCAAA 58.435 39.130 0.00 0.00 0.00 3.68
23 24 4.186856 TCATCATCGTCAGTAGTTGCAA 57.813 40.909 0.00 0.00 0.00 4.08
24 25 3.866883 TCATCATCGTCAGTAGTTGCA 57.133 42.857 0.00 0.00 0.00 4.08
25 26 6.422100 ACAATATCATCATCGTCAGTAGTTGC 59.578 38.462 0.00 0.00 0.00 4.17
26 27 7.936950 ACAATATCATCATCGTCAGTAGTTG 57.063 36.000 0.00 0.00 0.00 3.16
31 32 8.893727 TCGATATACAATATCATCATCGTCAGT 58.106 33.333 7.49 0.00 36.22 3.41
32 33 9.890352 ATCGATATACAATATCATCATCGTCAG 57.110 33.333 0.00 0.00 36.22 3.51
51 52 9.958234 CGAGACCTATATGATTGAAATCGATAT 57.042 33.333 0.00 0.00 38.26 1.63
52 53 7.915923 GCGAGACCTATATGATTGAAATCGATA 59.084 37.037 0.00 0.00 38.26 2.92
53 54 6.754209 GCGAGACCTATATGATTGAAATCGAT 59.246 38.462 0.00 0.00 38.26 3.59
54 55 6.093404 GCGAGACCTATATGATTGAAATCGA 58.907 40.000 0.00 0.00 38.26 3.59
55 56 5.863935 TGCGAGACCTATATGATTGAAATCG 59.136 40.000 0.00 0.00 38.26 3.34
56 57 7.658179 TTGCGAGACCTATATGATTGAAATC 57.342 36.000 0.00 0.00 35.97 2.17
57 58 7.173907 CCTTTGCGAGACCTATATGATTGAAAT 59.826 37.037 0.00 0.00 0.00 2.17
58 59 6.483307 CCTTTGCGAGACCTATATGATTGAAA 59.517 38.462 0.00 0.00 0.00 2.69
59 60 5.991606 CCTTTGCGAGACCTATATGATTGAA 59.008 40.000 0.00 0.00 0.00 2.69
60 61 5.511373 CCCTTTGCGAGACCTATATGATTGA 60.511 44.000 0.00 0.00 0.00 2.57
61 62 4.692625 CCCTTTGCGAGACCTATATGATTG 59.307 45.833 0.00 0.00 0.00 2.67
62 63 4.804261 GCCCTTTGCGAGACCTATATGATT 60.804 45.833 0.00 0.00 0.00 2.57
63 64 3.307059 GCCCTTTGCGAGACCTATATGAT 60.307 47.826 0.00 0.00 0.00 2.45
64 65 2.037251 GCCCTTTGCGAGACCTATATGA 59.963 50.000 0.00 0.00 0.00 2.15
65 66 2.417719 GCCCTTTGCGAGACCTATATG 58.582 52.381 0.00 0.00 0.00 1.78
66 67 2.841442 GCCCTTTGCGAGACCTATAT 57.159 50.000 0.00 0.00 0.00 0.86
77 78 1.199327 GACGAGGTAAAAGCCCTTTGC 59.801 52.381 0.00 0.00 41.71 3.68
78 79 1.463444 CGACGAGGTAAAAGCCCTTTG 59.537 52.381 0.00 0.00 32.36 2.77
79 80 1.345415 TCGACGAGGTAAAAGCCCTTT 59.655 47.619 0.00 0.00 30.60 3.11
80 81 0.971386 TCGACGAGGTAAAAGCCCTT 59.029 50.000 0.00 0.00 30.60 3.95
81 82 0.971386 TTCGACGAGGTAAAAGCCCT 59.029 50.000 0.00 0.00 34.11 5.19
82 83 1.337541 ACTTCGACGAGGTAAAAGCCC 60.338 52.381 11.29 0.00 0.00 5.19
83 84 1.725164 CACTTCGACGAGGTAAAAGCC 59.275 52.381 12.62 0.00 0.00 4.35
84 85 1.725164 CCACTTCGACGAGGTAAAAGC 59.275 52.381 12.62 0.00 0.00 3.51
85 86 3.022607 ACCACTTCGACGAGGTAAAAG 57.977 47.619 12.62 1.24 31.32 2.27
86 87 4.037923 ACTTACCACTTCGACGAGGTAAAA 59.962 41.667 24.06 11.28 43.70 1.52
87 88 3.569701 ACTTACCACTTCGACGAGGTAAA 59.430 43.478 24.06 12.97 43.70 2.01
88 89 3.149196 ACTTACCACTTCGACGAGGTAA 58.851 45.455 23.06 23.06 42.56 2.85
89 90 2.783135 ACTTACCACTTCGACGAGGTA 58.217 47.619 12.62 13.07 35.62 3.08
90 91 1.613836 ACTTACCACTTCGACGAGGT 58.386 50.000 15.00 15.00 38.14 3.85
91 92 2.719426 AACTTACCACTTCGACGAGG 57.281 50.000 5.30 5.30 0.00 4.63
92 93 5.455392 TCTAAAACTTACCACTTCGACGAG 58.545 41.667 0.00 0.00 0.00 4.18
93 94 5.437289 TCTAAAACTTACCACTTCGACGA 57.563 39.130 0.00 0.00 0.00 4.20
94 95 6.701432 AATCTAAAACTTACCACTTCGACG 57.299 37.500 0.00 0.00 0.00 5.12
95 96 7.858583 ACAAATCTAAAACTTACCACTTCGAC 58.141 34.615 0.00 0.00 0.00 4.20
96 97 9.715121 ATACAAATCTAAAACTTACCACTTCGA 57.285 29.630 0.00 0.00 0.00 3.71
97 98 9.968743 GATACAAATCTAAAACTTACCACTTCG 57.031 33.333 0.00 0.00 0.00 3.79
130 131 9.638176 AAGGCATAGATATCAAGTGAAAGAATT 57.362 29.630 5.32 0.00 0.00 2.17
131 132 9.282569 GAAGGCATAGATATCAAGTGAAAGAAT 57.717 33.333 5.32 0.00 0.00 2.40
132 133 8.489489 AGAAGGCATAGATATCAAGTGAAAGAA 58.511 33.333 5.32 0.00 0.00 2.52
133 134 8.027524 AGAAGGCATAGATATCAAGTGAAAGA 57.972 34.615 5.32 0.00 0.00 2.52
134 135 8.149647 AGAGAAGGCATAGATATCAAGTGAAAG 58.850 37.037 5.32 0.00 0.00 2.62
135 136 8.027524 AGAGAAGGCATAGATATCAAGTGAAA 57.972 34.615 5.32 0.00 0.00 2.69
136 137 7.609097 AGAGAAGGCATAGATATCAAGTGAA 57.391 36.000 5.32 0.00 0.00 3.18
137 138 7.609097 AAGAGAAGGCATAGATATCAAGTGA 57.391 36.000 5.32 0.00 0.00 3.41
138 139 9.368674 CATAAGAGAAGGCATAGATATCAAGTG 57.631 37.037 5.32 1.85 0.00 3.16
139 140 9.319060 TCATAAGAGAAGGCATAGATATCAAGT 57.681 33.333 5.32 0.00 0.00 3.16
176 177 2.622942 GCCAACACCTTCAAGACATGAA 59.377 45.455 0.00 0.00 45.71 2.57
177 178 2.158623 AGCCAACACCTTCAAGACATGA 60.159 45.455 0.00 0.00 35.85 3.07
178 179 2.227388 GAGCCAACACCTTCAAGACATG 59.773 50.000 0.00 0.00 0.00 3.21
179 180 2.107204 AGAGCCAACACCTTCAAGACAT 59.893 45.455 0.00 0.00 0.00 3.06
180 181 1.490490 AGAGCCAACACCTTCAAGACA 59.510 47.619 0.00 0.00 0.00 3.41
181 182 2.262423 AGAGCCAACACCTTCAAGAC 57.738 50.000 0.00 0.00 0.00 3.01
182 183 2.439507 AGAAGAGCCAACACCTTCAAGA 59.560 45.455 0.00 0.00 38.89 3.02
183 184 2.856222 AGAAGAGCCAACACCTTCAAG 58.144 47.619 0.00 0.00 38.89 3.02
184 185 3.214328 GAAGAAGAGCCAACACCTTCAA 58.786 45.455 0.00 0.00 38.89 2.69
185 186 2.487265 GGAAGAAGAGCCAACACCTTCA 60.487 50.000 0.00 0.00 38.89 3.02
186 187 2.155279 GGAAGAAGAGCCAACACCTTC 58.845 52.381 0.00 0.00 37.23 3.46
187 188 1.494721 TGGAAGAAGAGCCAACACCTT 59.505 47.619 0.00 0.00 0.00 3.50
188 189 1.140312 TGGAAGAAGAGCCAACACCT 58.860 50.000 0.00 0.00 0.00 4.00
189 190 1.239347 GTGGAAGAAGAGCCAACACC 58.761 55.000 0.00 0.00 35.63 4.16
190 191 1.239347 GGTGGAAGAAGAGCCAACAC 58.761 55.000 0.00 0.00 41.56 3.32
191 192 0.250295 CGGTGGAAGAAGAGCCAACA 60.250 55.000 0.00 0.00 42.05 3.33
192 193 0.034896 TCGGTGGAAGAAGAGCCAAC 59.965 55.000 0.00 0.00 38.52 3.77
193 194 0.984230 ATCGGTGGAAGAAGAGCCAA 59.016 50.000 0.00 0.00 35.63 4.52
194 195 0.250234 CATCGGTGGAAGAAGAGCCA 59.750 55.000 0.00 0.00 0.00 4.75
195 196 0.537188 TCATCGGTGGAAGAAGAGCC 59.463 55.000 0.00 0.00 0.00 4.70
196 197 2.159043 TCATCATCGGTGGAAGAAGAGC 60.159 50.000 0.00 0.00 0.00 4.09
197 198 3.492309 CCTCATCATCGGTGGAAGAAGAG 60.492 52.174 0.00 0.00 36.19 2.85
198 199 2.432146 CCTCATCATCGGTGGAAGAAGA 59.568 50.000 0.00 0.00 0.00 2.87
199 200 2.169352 ACCTCATCATCGGTGGAAGAAG 59.831 50.000 0.00 0.00 30.90 2.85
200 201 2.187958 ACCTCATCATCGGTGGAAGAA 58.812 47.619 0.00 0.00 30.90 2.52
201 202 1.866015 ACCTCATCATCGGTGGAAGA 58.134 50.000 0.00 0.00 30.90 2.87
202 203 2.698855 AACCTCATCATCGGTGGAAG 57.301 50.000 0.00 0.00 32.86 3.46
203 204 3.454447 ACATAACCTCATCATCGGTGGAA 59.546 43.478 0.00 0.00 32.86 3.53
204 205 3.038280 ACATAACCTCATCATCGGTGGA 58.962 45.455 0.00 0.00 32.86 4.02
205 206 3.133691 CACATAACCTCATCATCGGTGG 58.866 50.000 0.00 0.00 32.86 4.61
206 207 3.804325 GTCACATAACCTCATCATCGGTG 59.196 47.826 0.00 0.00 32.86 4.94
207 208 3.490933 CGTCACATAACCTCATCATCGGT 60.491 47.826 0.00 0.00 34.27 4.69
208 209 3.052745 CGTCACATAACCTCATCATCGG 58.947 50.000 0.00 0.00 0.00 4.18
209 210 2.472861 GCGTCACATAACCTCATCATCG 59.527 50.000 0.00 0.00 0.00 3.84
210 211 3.246226 GTGCGTCACATAACCTCATCATC 59.754 47.826 5.30 0.00 34.08 2.92
211 212 3.118629 AGTGCGTCACATAACCTCATCAT 60.119 43.478 11.58 0.00 36.74 2.45
212 213 2.233676 AGTGCGTCACATAACCTCATCA 59.766 45.455 11.58 0.00 36.74 3.07
213 214 2.604914 CAGTGCGTCACATAACCTCATC 59.395 50.000 11.58 0.00 36.74 2.92
214 215 2.233676 TCAGTGCGTCACATAACCTCAT 59.766 45.455 11.58 0.00 36.74 2.90
215 216 1.616374 TCAGTGCGTCACATAACCTCA 59.384 47.619 11.58 0.00 36.74 3.86
216 217 2.363788 TCAGTGCGTCACATAACCTC 57.636 50.000 11.58 0.00 36.74 3.85
217 218 2.233676 TCATCAGTGCGTCACATAACCT 59.766 45.455 11.58 0.00 36.74 3.50
218 219 2.616960 TCATCAGTGCGTCACATAACC 58.383 47.619 11.58 0.00 36.74 2.85
219 220 3.062639 CCTTCATCAGTGCGTCACATAAC 59.937 47.826 11.58 0.00 36.74 1.89
220 221 3.056179 TCCTTCATCAGTGCGTCACATAA 60.056 43.478 11.58 0.00 36.74 1.90
221 222 2.495669 TCCTTCATCAGTGCGTCACATA 59.504 45.455 11.58 1.12 36.74 2.29
222 223 1.276138 TCCTTCATCAGTGCGTCACAT 59.724 47.619 11.58 0.00 36.74 3.21
223 224 0.678950 TCCTTCATCAGTGCGTCACA 59.321 50.000 11.58 0.00 36.74 3.58
224 225 2.015736 ATCCTTCATCAGTGCGTCAC 57.984 50.000 2.28 2.28 34.10 3.67
225 226 2.028203 TCAATCCTTCATCAGTGCGTCA 60.028 45.455 0.00 0.00 0.00 4.35
226 227 2.621338 TCAATCCTTCATCAGTGCGTC 58.379 47.619 0.00 0.00 0.00 5.19
227 228 2.768253 TCAATCCTTCATCAGTGCGT 57.232 45.000 0.00 0.00 0.00 5.24
228 229 3.247886 CAGATCAATCCTTCATCAGTGCG 59.752 47.826 0.00 0.00 0.00 5.34
229 230 3.564644 CCAGATCAATCCTTCATCAGTGC 59.435 47.826 0.00 0.00 0.00 4.40
230 231 4.778579 ACCAGATCAATCCTTCATCAGTG 58.221 43.478 0.00 0.00 0.00 3.66
231 232 5.664908 AGTACCAGATCAATCCTTCATCAGT 59.335 40.000 0.00 0.00 0.00 3.41
232 233 6.172136 AGTACCAGATCAATCCTTCATCAG 57.828 41.667 0.00 0.00 0.00 2.90
233 234 6.566079 AAGTACCAGATCAATCCTTCATCA 57.434 37.500 0.00 0.00 0.00 3.07
234 235 7.872113 AAAAGTACCAGATCAATCCTTCATC 57.128 36.000 0.00 0.00 0.00 2.92
263 264 8.783093 CCAAGAACTACAAAGAACAATATGTGA 58.217 33.333 0.00 0.00 0.00 3.58
264 265 7.538678 GCCAAGAACTACAAAGAACAATATGTG 59.461 37.037 0.00 0.00 0.00 3.21
265 266 7.230510 TGCCAAGAACTACAAAGAACAATATGT 59.769 33.333 0.00 0.00 0.00 2.29
266 267 7.592938 TGCCAAGAACTACAAAGAACAATATG 58.407 34.615 0.00 0.00 0.00 1.78
267 268 7.759489 TGCCAAGAACTACAAAGAACAATAT 57.241 32.000 0.00 0.00 0.00 1.28
268 269 7.230510 ACATGCCAAGAACTACAAAGAACAATA 59.769 33.333 0.00 0.00 0.00 1.90
269 270 6.040842 ACATGCCAAGAACTACAAAGAACAAT 59.959 34.615 0.00 0.00 0.00 2.71
270 271 5.359576 ACATGCCAAGAACTACAAAGAACAA 59.640 36.000 0.00 0.00 0.00 2.83
271 272 4.887071 ACATGCCAAGAACTACAAAGAACA 59.113 37.500 0.00 0.00 0.00 3.18
272 273 5.438761 ACATGCCAAGAACTACAAAGAAC 57.561 39.130 0.00 0.00 0.00 3.01
273 274 6.463995 AAACATGCCAAGAACTACAAAGAA 57.536 33.333 0.00 0.00 0.00 2.52
274 275 6.463995 AAAACATGCCAAGAACTACAAAGA 57.536 33.333 0.00 0.00 0.00 2.52
275 276 8.816640 ATAAAAACATGCCAAGAACTACAAAG 57.183 30.769 0.00 0.00 0.00 2.77
276 277 8.637986 AGATAAAAACATGCCAAGAACTACAAA 58.362 29.630 0.00 0.00 0.00 2.83
277 278 8.177119 AGATAAAAACATGCCAAGAACTACAA 57.823 30.769 0.00 0.00 0.00 2.41
278 279 7.759489 AGATAAAAACATGCCAAGAACTACA 57.241 32.000 0.00 0.00 0.00 2.74
283 284 9.995003 ACAAAATAGATAAAAACATGCCAAGAA 57.005 25.926 0.00 0.00 0.00 2.52
284 285 9.995003 AACAAAATAGATAAAAACATGCCAAGA 57.005 25.926 0.00 0.00 0.00 3.02
286 287 9.553064 ACAACAAAATAGATAAAAACATGCCAA 57.447 25.926 0.00 0.00 0.00 4.52
303 304 7.331687 GCTCAATGCTTAATGGTACAACAAAAT 59.668 33.333 0.00 0.00 39.90 1.82
304 305 6.644592 GCTCAATGCTTAATGGTACAACAAAA 59.355 34.615 0.00 0.00 39.90 2.44
305 306 6.155827 GCTCAATGCTTAATGGTACAACAAA 58.844 36.000 0.00 0.00 39.90 2.83
306 307 5.708948 GCTCAATGCTTAATGGTACAACAA 58.291 37.500 0.00 0.00 39.90 2.83
307 308 5.309323 GCTCAATGCTTAATGGTACAACA 57.691 39.130 0.00 0.00 39.90 3.33
325 326 8.911662 GCACGAAAAATTTAGAATTTAAGCTCA 58.088 29.630 0.00 0.00 0.00 4.26
326 327 8.911662 TGCACGAAAAATTTAGAATTTAAGCTC 58.088 29.630 0.00 0.00 0.00 4.09
327 328 8.810652 TGCACGAAAAATTTAGAATTTAAGCT 57.189 26.923 0.00 0.00 0.00 3.74
333 334 9.474920 TCTCAATTGCACGAAAAATTTAGAATT 57.525 25.926 0.00 0.00 28.17 2.17
334 335 8.915654 GTCTCAATTGCACGAAAAATTTAGAAT 58.084 29.630 0.00 0.00 31.34 2.40
335 336 7.918033 TGTCTCAATTGCACGAAAAATTTAGAA 59.082 29.630 0.00 0.00 31.34 2.10
336 337 7.421599 TGTCTCAATTGCACGAAAAATTTAGA 58.578 30.769 0.00 0.00 0.00 2.10
337 338 7.621832 TGTCTCAATTGCACGAAAAATTTAG 57.378 32.000 0.00 0.00 0.00 1.85
338 339 9.853555 ATATGTCTCAATTGCACGAAAAATTTA 57.146 25.926 0.00 0.00 0.00 1.40
339 340 8.761575 ATATGTCTCAATTGCACGAAAAATTT 57.238 26.923 0.00 0.00 0.00 1.82
340 341 8.761575 AATATGTCTCAATTGCACGAAAAATT 57.238 26.923 0.00 0.00 0.00 1.82
341 342 8.761575 AAATATGTCTCAATTGCACGAAAAAT 57.238 26.923 0.00 0.00 0.00 1.82
342 343 8.486383 CAAAATATGTCTCAATTGCACGAAAAA 58.514 29.630 0.00 0.00 0.00 1.94
343 344 7.651304 ACAAAATATGTCTCAATTGCACGAAAA 59.349 29.630 0.00 0.00 37.96 2.29
344 345 7.144661 ACAAAATATGTCTCAATTGCACGAAA 58.855 30.769 0.00 0.00 37.96 3.46
345 346 6.676950 ACAAAATATGTCTCAATTGCACGAA 58.323 32.000 0.00 0.00 37.96 3.85
346 347 6.252967 ACAAAATATGTCTCAATTGCACGA 57.747 33.333 0.00 0.00 37.96 4.35
347 348 7.166307 CCATACAAAATATGTCTCAATTGCACG 59.834 37.037 0.00 0.00 42.70 5.34
348 349 7.436080 CCCATACAAAATATGTCTCAATTGCAC 59.564 37.037 0.00 0.40 42.70 4.57
349 350 7.417683 CCCCATACAAAATATGTCTCAATTGCA 60.418 37.037 0.00 0.00 42.70 4.08
350 351 6.925165 CCCCATACAAAATATGTCTCAATTGC 59.075 38.462 0.00 0.00 42.70 3.56
351 352 8.010733 ACCCCATACAAAATATGTCTCAATTG 57.989 34.615 0.00 0.00 42.70 2.32
352 353 8.608185 AACCCCATACAAAATATGTCTCAATT 57.392 30.769 0.00 0.00 42.70 2.32
353 354 8.608185 AAACCCCATACAAAATATGTCTCAAT 57.392 30.769 0.00 0.00 42.70 2.57
354 355 7.893302 AGAAACCCCATACAAAATATGTCTCAA 59.107 33.333 0.00 0.00 42.70 3.02
355 356 7.410174 AGAAACCCCATACAAAATATGTCTCA 58.590 34.615 0.00 0.00 42.70 3.27
356 357 7.881775 AGAAACCCCATACAAAATATGTCTC 57.118 36.000 0.00 0.00 42.70 3.36
357 358 8.664669 AAAGAAACCCCATACAAAATATGTCT 57.335 30.769 0.00 0.00 42.70 3.41
362 363 9.327731 ACCATAAAAGAAACCCCATACAAAATA 57.672 29.630 0.00 0.00 0.00 1.40
363 364 8.213489 ACCATAAAAGAAACCCCATACAAAAT 57.787 30.769 0.00 0.00 0.00 1.82
364 365 7.619512 ACCATAAAAGAAACCCCATACAAAA 57.380 32.000 0.00 0.00 0.00 2.44
365 366 7.093684 GCTACCATAAAAGAAACCCCATACAAA 60.094 37.037 0.00 0.00 0.00 2.83
366 367 6.378848 GCTACCATAAAAGAAACCCCATACAA 59.621 38.462 0.00 0.00 0.00 2.41
367 368 5.889289 GCTACCATAAAAGAAACCCCATACA 59.111 40.000 0.00 0.00 0.00 2.29
368 369 6.127101 AGCTACCATAAAAGAAACCCCATAC 58.873 40.000 0.00 0.00 0.00 2.39
369 370 6.335781 AGCTACCATAAAAGAAACCCCATA 57.664 37.500 0.00 0.00 0.00 2.74
370 371 5.206905 AGCTACCATAAAAGAAACCCCAT 57.793 39.130 0.00 0.00 0.00 4.00
371 372 4.668138 AGCTACCATAAAAGAAACCCCA 57.332 40.909 0.00 0.00 0.00 4.96
372 373 5.997843 TCTAGCTACCATAAAAGAAACCCC 58.002 41.667 0.00 0.00 0.00 4.95
373 374 6.038382 GCTTCTAGCTACCATAAAAGAAACCC 59.962 42.308 0.00 0.00 38.45 4.11
374 375 6.038382 GGCTTCTAGCTACCATAAAAGAAACC 59.962 42.308 0.00 0.00 41.99 3.27
375 376 6.824196 AGGCTTCTAGCTACCATAAAAGAAAC 59.176 38.462 1.34 0.00 41.99 2.78
376 377 6.958767 AGGCTTCTAGCTACCATAAAAGAAA 58.041 36.000 1.34 0.00 41.99 2.52
377 378 6.561519 AGGCTTCTAGCTACCATAAAAGAA 57.438 37.500 1.34 0.00 41.99 2.52
378 379 6.561519 AAGGCTTCTAGCTACCATAAAAGA 57.438 37.500 0.00 0.00 41.99 2.52
379 380 7.389053 CCATAAGGCTTCTAGCTACCATAAAAG 59.611 40.741 1.30 0.00 41.99 2.27
380 381 7.071950 TCCATAAGGCTTCTAGCTACCATAAAA 59.928 37.037 1.30 0.00 41.99 1.52
381 382 6.557253 TCCATAAGGCTTCTAGCTACCATAAA 59.443 38.462 1.30 0.00 41.99 1.40
382 383 6.082031 TCCATAAGGCTTCTAGCTACCATAA 58.918 40.000 1.30 0.00 41.99 1.90
383 384 5.651303 TCCATAAGGCTTCTAGCTACCATA 58.349 41.667 1.30 0.00 41.99 2.74
384 385 4.493618 TCCATAAGGCTTCTAGCTACCAT 58.506 43.478 1.30 0.00 41.99 3.55
385 386 3.923648 TCCATAAGGCTTCTAGCTACCA 58.076 45.455 1.30 0.00 41.99 3.25
386 387 4.284746 ACATCCATAAGGCTTCTAGCTACC 59.715 45.833 1.30 0.00 41.99 3.18
387 388 5.476091 ACATCCATAAGGCTTCTAGCTAC 57.524 43.478 1.30 0.00 41.99 3.58
388 389 7.612065 TTAACATCCATAAGGCTTCTAGCTA 57.388 36.000 1.30 0.00 41.99 3.32
389 390 6.500589 TTAACATCCATAAGGCTTCTAGCT 57.499 37.500 1.30 0.00 41.99 3.32
390 391 7.751768 ATTTAACATCCATAAGGCTTCTAGC 57.248 36.000 1.30 0.00 41.46 3.42
446 447 1.821332 GATTGGAGCAAGCCCTCGG 60.821 63.158 0.00 0.00 32.57 4.63
447 448 1.821332 GGATTGGAGCAAGCCCTCG 60.821 63.158 0.00 0.00 43.25 4.63
448 449 4.249513 GGATTGGAGCAAGCCCTC 57.750 61.111 0.00 0.00 43.25 4.30
473 474 4.741239 TCCCCTCCCTCCAGTGGC 62.741 72.222 3.51 0.00 0.00 5.01
474 475 2.366167 CTCCCCTCCCTCCAGTGG 60.366 72.222 1.40 1.40 0.00 4.00
475 476 2.366167 CCTCCCCTCCCTCCAGTG 60.366 72.222 0.00 0.00 0.00 3.66
476 477 3.700350 CCCTCCCCTCCCTCCAGT 61.700 72.222 0.00 0.00 0.00 4.00
477 478 3.700350 ACCCTCCCCTCCCTCCAG 61.700 72.222 0.00 0.00 0.00 3.86
478 479 3.695825 GACCCTCCCCTCCCTCCA 61.696 72.222 0.00 0.00 0.00 3.86
479 480 3.695825 TGACCCTCCCCTCCCTCC 61.696 72.222 0.00 0.00 0.00 4.30
480 481 2.041405 CTGACCCTCCCCTCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
481 482 1.541168 ATTCTGACCCTCCCCTCCCT 61.541 60.000 0.00 0.00 0.00 4.20
482 483 1.004891 ATTCTGACCCTCCCCTCCC 59.995 63.158 0.00 0.00 0.00 4.30
483 484 0.030603 AGATTCTGACCCTCCCCTCC 60.031 60.000 0.00 0.00 0.00 4.30
484 485 1.488393 CAAGATTCTGACCCTCCCCTC 59.512 57.143 0.00 0.00 0.00 4.30
485 486 1.589414 CAAGATTCTGACCCTCCCCT 58.411 55.000 0.00 0.00 0.00 4.79
486 487 0.548510 CCAAGATTCTGACCCTCCCC 59.451 60.000 0.00 0.00 0.00 4.81
487 488 1.290134 ACCAAGATTCTGACCCTCCC 58.710 55.000 0.00 0.00 0.00 4.30
488 489 3.370633 GGTAACCAAGATTCTGACCCTCC 60.371 52.174 0.00 0.00 0.00 4.30
489 490 3.263425 TGGTAACCAAGATTCTGACCCTC 59.737 47.826 0.00 0.00 0.00 4.30
490 491 3.256704 TGGTAACCAAGATTCTGACCCT 58.743 45.455 0.00 0.00 0.00 4.34
491 492 3.713826 TGGTAACCAAGATTCTGACCC 57.286 47.619 0.00 0.00 0.00 4.46
492 493 3.947834 CCATGGTAACCAAGATTCTGACC 59.052 47.826 2.57 0.00 36.95 4.02
493 494 3.947834 CCCATGGTAACCAAGATTCTGAC 59.052 47.826 11.73 0.00 36.95 3.51
494 495 3.053693 CCCCATGGTAACCAAGATTCTGA 60.054 47.826 11.73 0.00 36.95 3.27
495 496 3.053693 TCCCCATGGTAACCAAGATTCTG 60.054 47.826 11.73 0.00 36.95 3.02
496 497 3.197983 TCCCCATGGTAACCAAGATTCT 58.802 45.455 11.73 0.00 36.95 2.40
497 498 3.053619 ACTCCCCATGGTAACCAAGATTC 60.054 47.826 11.73 0.00 36.95 2.52
498 499 2.926329 ACTCCCCATGGTAACCAAGATT 59.074 45.455 11.73 0.00 36.95 2.40
499 500 2.242196 CACTCCCCATGGTAACCAAGAT 59.758 50.000 11.73 0.00 36.95 2.40
500 501 1.633432 CACTCCCCATGGTAACCAAGA 59.367 52.381 11.73 0.00 36.95 3.02
501 502 1.633432 TCACTCCCCATGGTAACCAAG 59.367 52.381 11.73 1.18 36.95 3.61
502 503 1.748732 TCACTCCCCATGGTAACCAA 58.251 50.000 11.73 0.00 36.95 3.67
503 504 1.748732 TTCACTCCCCATGGTAACCA 58.251 50.000 11.73 0.00 38.19 3.67
504 505 3.434596 GGTATTCACTCCCCATGGTAACC 60.435 52.174 11.73 0.00 0.00 2.85
505 506 3.458487 AGGTATTCACTCCCCATGGTAAC 59.542 47.826 11.73 0.00 0.00 2.50
506 507 3.743132 AGGTATTCACTCCCCATGGTAA 58.257 45.455 11.73 0.00 0.00 2.85
507 508 3.431411 AGGTATTCACTCCCCATGGTA 57.569 47.619 11.73 0.00 0.00 3.25
508 509 2.286935 AGGTATTCACTCCCCATGGT 57.713 50.000 11.73 0.00 0.00 3.55
509 510 3.669939 AAAGGTATTCACTCCCCATGG 57.330 47.619 4.14 4.14 0.00 3.66
510 511 4.096382 CGAAAAAGGTATTCACTCCCCATG 59.904 45.833 0.00 0.00 0.00 3.66
511 512 4.018779 TCGAAAAAGGTATTCACTCCCCAT 60.019 41.667 0.00 0.00 0.00 4.00
512 513 3.328343 TCGAAAAAGGTATTCACTCCCCA 59.672 43.478 0.00 0.00 0.00 4.96
513 514 3.939592 CTCGAAAAAGGTATTCACTCCCC 59.060 47.826 0.00 0.00 0.00 4.81
514 515 4.828829 TCTCGAAAAAGGTATTCACTCCC 58.171 43.478 0.00 0.00 0.00 4.30
515 516 5.875359 ACATCTCGAAAAAGGTATTCACTCC 59.125 40.000 0.00 0.00 0.00 3.85
516 517 6.969828 ACATCTCGAAAAAGGTATTCACTC 57.030 37.500 0.00 0.00 0.00 3.51
517 518 7.495934 CCATACATCTCGAAAAAGGTATTCACT 59.504 37.037 0.00 0.00 0.00 3.41
518 519 7.280205 ACCATACATCTCGAAAAAGGTATTCAC 59.720 37.037 0.00 0.00 0.00 3.18
519 520 7.335627 ACCATACATCTCGAAAAAGGTATTCA 58.664 34.615 0.00 0.00 0.00 2.57
520 521 7.787725 ACCATACATCTCGAAAAAGGTATTC 57.212 36.000 0.00 0.00 0.00 1.75
521 522 7.282450 GGAACCATACATCTCGAAAAAGGTATT 59.718 37.037 0.00 0.00 0.00 1.89
522 523 6.766467 GGAACCATACATCTCGAAAAAGGTAT 59.234 38.462 0.00 0.00 0.00 2.73
523 524 6.110707 GGAACCATACATCTCGAAAAAGGTA 58.889 40.000 0.00 0.00 0.00 3.08
524 525 4.941873 GGAACCATACATCTCGAAAAAGGT 59.058 41.667 0.00 0.00 0.00 3.50
525 526 4.941263 TGGAACCATACATCTCGAAAAAGG 59.059 41.667 0.00 0.00 0.00 3.11
526 527 6.458751 CCATGGAACCATACATCTCGAAAAAG 60.459 42.308 5.56 0.00 34.91 2.27
527 528 5.356751 CCATGGAACCATACATCTCGAAAAA 59.643 40.000 5.56 0.00 34.91 1.94
528 529 4.881273 CCATGGAACCATACATCTCGAAAA 59.119 41.667 5.56 0.00 34.91 2.29
529 530 4.450976 CCATGGAACCATACATCTCGAAA 58.549 43.478 5.56 0.00 34.91 3.46
530 531 3.744214 GCCATGGAACCATACATCTCGAA 60.744 47.826 18.40 0.00 34.91 3.71
531 532 2.224281 GCCATGGAACCATACATCTCGA 60.224 50.000 18.40 0.00 34.91 4.04
532 533 2.146342 GCCATGGAACCATACATCTCG 58.854 52.381 18.40 0.00 34.91 4.04
533 534 3.144506 CAGCCATGGAACCATACATCTC 58.855 50.000 18.40 0.00 34.91 2.75
534 535 2.750807 GCAGCCATGGAACCATACATCT 60.751 50.000 18.40 0.00 34.91 2.90
535 536 1.610522 GCAGCCATGGAACCATACATC 59.389 52.381 18.40 0.00 34.91 3.06
536 537 1.696063 GCAGCCATGGAACCATACAT 58.304 50.000 18.40 0.00 34.91 2.29
537 538 0.747644 CGCAGCCATGGAACCATACA 60.748 55.000 18.40 0.00 34.91 2.29
538 539 2.024918 CGCAGCCATGGAACCATAC 58.975 57.895 18.40 0.00 34.91 2.39
539 540 4.557554 CGCAGCCATGGAACCATA 57.442 55.556 18.40 0.00 34.91 2.74
552 553 2.054363 CATTCCTACTCGTATGCGCAG 58.946 52.381 18.32 3.73 38.14 5.18
553 554 1.679153 TCATTCCTACTCGTATGCGCA 59.321 47.619 14.96 14.96 38.14 6.09
554 555 2.417339 TCATTCCTACTCGTATGCGC 57.583 50.000 0.00 0.00 38.14 6.09
555 556 3.164358 CGATCATTCCTACTCGTATGCG 58.836 50.000 0.00 0.00 39.92 4.73
556 557 3.914966 CACGATCATTCCTACTCGTATGC 59.085 47.826 0.00 0.00 41.98 3.14
557 558 3.914966 GCACGATCATTCCTACTCGTATG 59.085 47.826 0.00 0.00 41.98 2.39
649 650 4.069232 CCTCCTTCGTGCGAGCCA 62.069 66.667 0.00 0.00 0.00 4.75
661 662 2.856988 TTTTCCGCCACCCCTCCT 60.857 61.111 0.00 0.00 0.00 3.69
791 804 7.576098 GCCATCATGAATTTGCATTTCCTTTTT 60.576 33.333 0.00 0.00 0.00 1.94
818 834 1.002251 TCGCAAAAAGGTAAACGCTGG 60.002 47.619 0.00 0.00 0.00 4.85
823 839 6.905609 GCTCATATAGTCGCAAAAAGGTAAAC 59.094 38.462 0.00 0.00 0.00 2.01
845 861 1.904990 GAGAAGGGGTCTGTGGGCTC 61.905 65.000 0.00 0.00 36.41 4.70
852 868 1.036707 GATCGAGGAGAAGGGGTCTG 58.963 60.000 0.00 0.00 36.41 3.51
855 871 0.105913 GAGGATCGAGGAGAAGGGGT 60.106 60.000 0.00 0.00 0.00 4.95
928 944 2.028476 CACCCGATGGAGTGACTACAAA 60.028 50.000 0.00 0.00 36.01 2.83
941 957 0.320247 GAGGCTAGATGCACCCGATG 60.320 60.000 0.00 0.00 45.15 3.84
1106 1155 4.717629 TGGCGACGAAGGCGACAG 62.718 66.667 0.00 0.00 42.70 3.51
1278 1327 4.954118 ACGTGGAGGGTGAGGCCA 62.954 66.667 5.01 0.00 39.65 5.36
1300 1349 1.565156 GCGATGAACCACACGAGCAA 61.565 55.000 0.00 0.00 0.00 3.91
1335 1384 3.249189 AAGGCGGAGAAGGCACCA 61.249 61.111 0.00 0.00 39.37 4.17
1375 1424 3.244422 TGGAAGACAAGTAAAGACGCCAT 60.244 43.478 0.00 0.00 0.00 4.40
1586 1668 1.589113 GAGGAGCACAAGAGAGCGT 59.411 57.895 0.00 0.00 36.39 5.07
1590 1672 0.322975 GCTTGGAGGAGCACAAGAGA 59.677 55.000 8.45 0.00 45.22 3.10
1628 1725 2.989824 CCGTGAGTGGGGACGAGT 60.990 66.667 0.00 0.00 37.81 4.18
1677 1774 4.905429 TGCTACTCTTTTCATGGCTACAA 58.095 39.130 0.00 0.00 0.00 2.41
1760 2019 4.141981 TGCAGACAAAAAGAGGAAATGCAA 60.142 37.500 0.00 0.00 38.13 4.08
1835 2094 0.105039 CCCCGTAGTGATTCAGAGCC 59.895 60.000 0.00 0.00 0.00 4.70
1895 2155 2.271800 CTCCATCGTAAGCTCACAACC 58.728 52.381 0.00 0.00 37.18 3.77
2016 2347 2.036733 ACACACATACACACCTAAGCGT 59.963 45.455 0.00 0.00 0.00 5.07
2074 2420 1.070843 CACGCTTGTTACTGAACCACG 60.071 52.381 0.00 0.00 34.38 4.94
2084 2430 4.159693 ACATAGGAGATCACACGCTTGTTA 59.840 41.667 0.00 0.00 31.66 2.41
2088 2434 3.027412 AGACATAGGAGATCACACGCTT 58.973 45.455 0.00 0.00 0.00 4.68
2102 2448 5.590530 AGTAAAGGACTGCAGAGACATAG 57.409 43.478 23.35 0.00 36.87 2.23
2125 2562 2.676076 GCCTTGCGTGTGATTCAAAAT 58.324 42.857 0.00 0.00 0.00 1.82
2139 2576 0.320683 AAGGAAATTTGGCGCCTTGC 60.321 50.000 29.70 18.59 39.18 4.01
2148 2585 1.876322 TTTGGCGCCAAGGAAATTTG 58.124 45.000 37.88 0.00 37.24 2.32
2150 2587 2.857186 AATTTGGCGCCAAGGAAATT 57.143 40.000 37.88 30.56 37.24 1.82
2151 2588 2.857186 AAATTTGGCGCCAAGGAAAT 57.143 40.000 37.88 27.04 37.24 2.17
2152 2589 2.630580 ACTAAATTTGGCGCCAAGGAAA 59.369 40.909 37.88 26.04 37.24 3.13
2153 2590 2.243810 ACTAAATTTGGCGCCAAGGAA 58.756 42.857 37.88 26.41 37.24 3.36
2154 2591 1.917872 ACTAAATTTGGCGCCAAGGA 58.082 45.000 37.88 27.16 37.24 3.36
2155 2592 4.359706 GAATACTAAATTTGGCGCCAAGG 58.640 43.478 37.88 26.82 37.24 3.61
2156 2593 4.142271 TGGAATACTAAATTTGGCGCCAAG 60.142 41.667 37.88 29.16 37.24 3.61
2157 2594 3.764434 TGGAATACTAAATTTGGCGCCAA 59.236 39.130 37.30 37.30 0.00 4.52
2158 2595 3.357203 TGGAATACTAAATTTGGCGCCA 58.643 40.909 29.03 29.03 0.00 5.69
2159 2596 4.298332 CATGGAATACTAAATTTGGCGCC 58.702 43.478 22.73 22.73 0.00 6.53
2160 2597 3.735746 GCATGGAATACTAAATTTGGCGC 59.264 43.478 0.00 0.00 0.00 6.53
2161 2598 3.974401 CGCATGGAATACTAAATTTGGCG 59.026 43.478 0.00 0.00 0.00 5.69
2162 2599 4.037446 TCCGCATGGAATACTAAATTTGGC 59.963 41.667 0.00 0.00 42.85 4.52
2163 2600 5.766150 TCCGCATGGAATACTAAATTTGG 57.234 39.130 0.00 0.00 42.85 3.28
2365 2802 6.724925 GAAACCGATTAATTTCTACCGGAACG 60.725 42.308 9.46 0.00 40.57 3.95
2369 2806 5.583457 AGTGAAACCGATTAATTTCTACCGG 59.417 40.000 0.00 0.00 42.30 5.28
2371 2808 6.128117 TGCAGTGAAACCGATTAATTTCTACC 60.128 38.462 0.00 0.00 37.80 3.18
2375 2812 6.253512 GGAATGCAGTGAAACCGATTAATTTC 59.746 38.462 0.00 0.00 37.80 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.