AutoCloner

Multiple sequence alignment - TraesCS6D01G074100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G074100	chr6D	100.000	2765	0	0	1	2765	37882191	37879427	0.000000e+00	5107
1	TraesCS6D01G074100	chr6D	94.737	1045	41	5	859	1895	37839233	37838195	0.000000e+00	1613
2	TraesCS6D01G074100	chr6D	92.676	1065	56	6	824	1874	37736022	37734966	0.000000e+00	1515
3	TraesCS6D01G074100	chr6D	85.448	859	82	21	1918	2765	37837289	37836463	0.000000e+00	854
4	TraesCS6D01G074100	chr6D	95.349	516	21	3	153	666	361418964	361418450	0.000000e+00	817
5	TraesCS6D01G074100	chr6B	91.298	1333	93	15	773	2095	88573052	88571733	0.000000e+00	1797
6	TraesCS6D01G074100	chr6B	91.723	1039	65	9	841	1875	88498658	88497637	0.000000e+00	1423
7	TraesCS6D01G074100	chr6A	90.594	1212	75	12	694	1875	49132291	49131089	0.000000e+00	1570
8	TraesCS6D01G074100	chr3D	93.400	697	23	9	1	676	61845974	61846668	0.000000e+00	1011
9	TraesCS6D01G074100	chr3D	93.094	695	24	11	1	674	419989260	419988569	0.000000e+00	996
10	TraesCS6D01G074100	chr1D	93.114	668	28	6	19	670	110013653	110012988	0.000000e+00	963
11	TraesCS6D01G074100	chr1D	94.590	536	28	1	145	680	54927857	54927323	0.000000e+00	828
12	TraesCS6D01G074100	chr1D	96.319	489	17	1	190	678	439210529	439210042	0.000000e+00	802
13	TraesCS6D01G074100	chr1D	90.909	88	6	2	19	105	54928312	54928226	1.740000e-22	117
14	TraesCS6D01G074100	chr7D	92.500	680	25	9	1	654	621137834	621138513	0.000000e+00	950
15	TraesCS6D01G074100	chr7D	92.227	669	25	9	19	670	36376105	36375447	0.000000e+00	922
16	TraesCS6D01G074100	chr7D	96.466	481	17	0	190	670	179222545	179222065	0.000000e+00	795
17	TraesCS6D01G074100	chr4D	91.931	694	27	12	1	666	445095789	445095097	0.000000e+00	944

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G074100	chr6D	37879427	37882191	2764	True	5107.0	5107	100.0000	1	2765	1	chr6D.!!$R2	2764
1	TraesCS6D01G074100	chr6D	37734966	37736022	1056	True	1515.0	1515	92.6760	824	1874	1	chr6D.!!$R1	1050
2	TraesCS6D01G074100	chr6D	37836463	37839233	2770	True	1233.5	1613	90.0925	859	2765	2	chr6D.!!$R4	1906
3	TraesCS6D01G074100	chr6D	361418450	361418964	514	True	817.0	817	95.3490	153	666	1	chr6D.!!$R3	513
4	TraesCS6D01G074100	chr6B	88571733	88573052	1319	True	1797.0	1797	91.2980	773	2095	1	chr6B.!!$R2	1322
5	TraesCS6D01G074100	chr6B	88497637	88498658	1021	True	1423.0	1423	91.7230	841	1875	1	chr6B.!!$R1	1034
6	TraesCS6D01G074100	chr6A	49131089	49132291	1202	True	1570.0	1570	90.5940	694	1875	1	chr6A.!!$R1	1181
7	TraesCS6D01G074100	chr3D	61845974	61846668	694	False	1011.0	1011	93.4000	1	676	1	chr3D.!!$F1	675
8	TraesCS6D01G074100	chr3D	419988569	419989260	691	True	996.0	996	93.0940	1	674	1	chr3D.!!$R1	673
9	TraesCS6D01G074100	chr1D	110012988	110013653	665	True	963.0	963	93.1140	19	670	1	chr1D.!!$R1	651
10	TraesCS6D01G074100	chr1D	54927323	54928312	989	True	472.5	828	92.7495	19	680	2	chr1D.!!$R3	661
11	TraesCS6D01G074100	chr7D	621137834	621138513	679	False	950.0	950	92.5000	1	654	1	chr7D.!!$F1	653
12	TraesCS6D01G074100	chr7D	36375447	36376105	658	True	922.0	922	92.2270	19	670	1	chr7D.!!$R1	651
13	TraesCS6D01G074100	chr4D	445095097	445095789	692	True	944.0	944	91.9310	1	666	1	chr4D.!!$R1	665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
921	1307	0.39113	TTCGGATCCGTTTCAGGCTG	60.391	55.0	32.15	8.58	40.74	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2501	3802	0.108804	CGCTGTCACTAACCGACCAT	60.109	55.0	0.0	0.0	32.15	3.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
91	99	4.200283	CCTCTCCGTCTCAGGCGC	62.200	72.222	0.00	0.00	0.00	6.53
288	636	0.461961	CTAAGCACTAGGCCGCTCTT	59.538	55.000	3.15	4.05	46.50	2.85
566	915	5.394562	TTCTGGAGAGAGATAGTGGATGA	57.605	43.478	0.00	0.00	0.00	2.92
573	922	3.417101	AGAGATAGTGGATGAGTAGCGG	58.583	50.000	0.00	0.00	0.00	5.52
601	951	1.208358	CAGCGACGAAGGTACGTGA	59.792	57.895	0.00	0.00	46.52	4.35
670	1020	1.934463	CGCGATTCAGAATTCGGGG	59.066	57.895	0.00	7.73	35.42	5.73
676	1026	4.440112	GCGATTCAGAATTCGGGGAAAAAT	60.440	41.667	5.73	0.00	0.00	1.82
680	1030	8.015658	CGATTCAGAATTCGGGGAAAAATATAC	58.984	37.037	5.73	0.00	0.00	1.47
681	1031	8.996651	ATTCAGAATTCGGGGAAAAATATACT	57.003	30.769	5.73	0.00	0.00	2.12
682	1032	8.817092	TTCAGAATTCGGGGAAAAATATACTT	57.183	30.769	5.73	0.00	0.00	2.24
683	1033	9.908747	TTCAGAATTCGGGGAAAAATATACTTA	57.091	29.630	5.73	0.00	0.00	2.24
686	1036	9.516546	AGAATTCGGGGAAAAATATACTTATCC	57.483	33.333	0.00	0.00	0.00	2.59
687	1037	8.645814	AATTCGGGGAAAAATATACTTATCCC	57.354	34.615	0.00	0.00	44.73	3.85
688	1038	7.396906	TTCGGGGAAAAATATACTTATCCCT	57.603	36.000	8.44	0.00	44.81	4.20
689	1039	8.508969	TTCGGGGAAAAATATACTTATCCCTA	57.491	34.615	8.44	0.00	44.81	3.53
690	1040	8.508969	TCGGGGAAAAATATACTTATCCCTAA	57.491	34.615	8.44	0.00	44.81	2.69
691	1041	8.947305	TCGGGGAAAAATATACTTATCCCTAAA	58.053	33.333	8.44	0.00	44.81	1.85
692	1042	9.577222	CGGGGAAAAATATACTTATCCCTAAAA	57.423	33.333	8.44	0.00	44.81	1.52
715	1065	1.370051	GCGTCCGTTTGGCAAAGTC	60.370	57.895	13.94	1.41	34.14	3.01
741	1091	5.514274	TGCTGTTACTGAAAAGGAAAAGG	57.486	39.130	0.00	0.00	0.00	3.11
748	1098	9.374711	TGTTACTGAAAAGGAAAAGGGAATATT	57.625	29.630	0.00	0.00	0.00	1.28
811	1161	2.486951	CGTGCACGTATAGGTAAGCT	57.513	50.000	30.50	0.00	34.11	3.74
815	1165	3.028850	TGCACGTATAGGTAAGCTTCCT	58.971	45.455	17.83	17.83	38.91	3.36
816	1166	3.181479	TGCACGTATAGGTAAGCTTCCTG	60.181	47.826	21.03	10.98	36.60	3.86
817	1167	3.799232	GCACGTATAGGTAAGCTTCCTGG	60.799	52.174	21.03	12.81	36.60	4.45
818	1168	3.635373	CACGTATAGGTAAGCTTCCTGGA	59.365	47.826	21.03	0.00	36.60	3.86
819	1169	3.890147	ACGTATAGGTAAGCTTCCTGGAG	59.110	47.826	21.03	14.05	36.60	3.86
921	1307	0.391130	TTCGGATCCGTTTCAGGCTG	60.391	55.000	32.15	8.58	40.74	4.85
1853	2260	4.386867	AACGATTGTATCCATGTCTCGT	57.613	40.909	0.00	0.00	39.31	4.18
1887	2294	8.430063	CAATGCAGTATTTCAAAAGTTCATGAC	58.570	33.333	0.00	0.00	0.00	3.06
1905	2586	9.081997	GTTCATGACTTGTAAAAACATTCACAA	57.918	29.630	0.00	0.00	0.00	3.33
2045	3345	9.750125	AAGTTCAATGATAAAGAAAAGGTTCAC	57.250	29.630	0.00	0.00	36.09	3.18
2064	3364	8.845227	AGGTTCACAAAATTTGAAAAAGTTTGT	58.155	25.926	19.67	19.67	39.09	2.83
2291	3592	8.575649	AAAAAGAACAGAAGAAAACCTGAGTA	57.424	30.769	0.00	0.00	34.65	2.59
2305	3606	5.017294	ACCTGAGTAAAGCATCTAGAAGC	57.983	43.478	12.00	12.00	0.00	3.86
2317	3618	7.458409	AGCATCTAGAAGCTTTCAAAAATCA	57.542	32.000	16.53	0.00	38.01	2.57
2328	3629	8.986477	AGCTTTCAAAAATCATAATACACCAC	57.014	30.769	0.00	0.00	0.00	4.16
2331	3632	9.357652	CTTTCAAAAATCATAATACACCACTGG	57.642	33.333	0.00	0.00	0.00	4.00
2344	3645	1.080093	CACTGGCTCGCGAAACCTA	60.080	57.895	23.78	12.38	0.00	3.08
2348	3649	2.098831	GGCTCGCGAAACCTACACC	61.099	63.158	18.16	3.55	0.00	4.16
2373	3674	0.320421	AGCACAGTTGACGCGGTATT	60.320	50.000	12.47	0.00	0.00	1.89
2382	3683	5.788531	CAGTTGACGCGGTATTAAAAGAAAG	59.211	40.000	12.47	0.00	0.00	2.62
2400	3701	6.581171	AGAAAGAAGAATCAAATGGACCAC	57.419	37.500	0.00	0.00	0.00	4.16
2403	3704	5.003096	AGAAGAATCAAATGGACCACCTT	57.997	39.130	0.00	0.00	37.04	3.50
2409	3710	7.840931	AGAATCAAATGGACCACCTTATTTTC	58.159	34.615	0.00	0.00	37.04	2.29
2410	3711	5.637006	TCAAATGGACCACCTTATTTTCG	57.363	39.130	0.00	0.00	37.04	3.46
2417	3718	4.272748	GGACCACCTTATTTTCGATGTAGC	59.727	45.833	0.00	0.00	0.00	3.58
2421	3722	5.006746	CCACCTTATTTTCGATGTAGCTGTC	59.993	44.000	0.00	0.00	0.00	3.51
2450	3751	1.863267	TGCGAACCATTTGCAAAAGG	58.137	45.000	27.42	27.42	46.62	3.11
2460	3761	5.045286	ACCATTTGCAAAAGGGGCATATAAA	60.045	36.000	30.88	0.00	41.58	1.40
2463	3764	5.690464	TTGCAAAAGGGGCATATAAATGT	57.310	34.783	0.00	0.00	41.58	2.71
2469	3770	2.235016	GGGGCATATAAATGTCGCCAA	58.765	47.619	0.00	0.00	43.02	4.52
2490	3791	6.459710	GCCAAAAGCGCTAAATAGGAGTAAAT	60.460	38.462	12.05	0.00	0.00	1.40
2492	3793	8.784043	CCAAAAGCGCTAAATAGGAGTAAATAT	58.216	33.333	12.05	0.00	0.00	1.28
2512	3813	7.979444	AATATGATTGGTTATGGTCGGTTAG	57.021	36.000	0.00	0.00	0.00	2.34
2513	3814	4.829872	TGATTGGTTATGGTCGGTTAGT	57.170	40.909	0.00	0.00	0.00	2.24
2523	3824	2.126618	CGGTTAGTGACAGCGCGA	60.127	61.111	12.10	0.00	0.00	5.87
2561	3862	2.269241	GCTTAAGGCGCTGGGAGT	59.731	61.111	7.64	0.00	0.00	3.85
2575	3877	4.519350	CGCTGGGAGTGTGAGAACTATATA	59.481	45.833	0.00	0.00	0.00	0.86
2583	3885	8.679100	GGAGTGTGAGAACTATATATCGCTTAT	58.321	37.037	0.00	0.00	0.00	1.73
2599	3901	2.036089	GCTTATAGCGGCAGTTCCTACT	59.964	50.000	1.45	0.00	34.00	2.57
2607	3909	1.893786	CAGTTCCTACTGCCTCGCT	59.106	57.895	0.00	0.00	44.81	4.93
2609	3911	0.977395	AGTTCCTACTGCCTCGCTTT	59.023	50.000	0.00	0.00	31.99	3.51
2622	3924	2.551032	CCTCGCTTTAAGGTTTTTCCGT	59.449	45.455	0.00	0.00	41.99	4.69
2625	3927	2.291190	CGCTTTAAGGTTTTTCCGTCCA	59.709	45.455	0.00	0.00	41.99	4.02
2630	3932	6.563222	TTTAAGGTTTTTCCGTCCATACAG	57.437	37.500	0.00	0.00	41.99	2.74
2663	3965	1.466167	CCATTCCTCAGTGCTCGTTTG	59.534	52.381	0.00	0.00	0.00	2.93
2728	4030	8.980143	TTTGTTTCTTTGTTTCTTCTTCGATT	57.020	26.923	0.00	0.00	0.00	3.34
2746	4048	6.300354	TCGATTTTCTCTGGTTTCTTTGTC	57.700	37.500	0.00	0.00	0.00	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
72	80	1.826054	CGCCTGAGACGGAGAGGAT	60.826	63.158	0.00	0.00	0.00	3.24
408	756	2.058595	GGAGGAACCAGGCGAGCTA	61.059	63.158	0.00	0.00	38.79	3.32
409	757	3.394836	GGAGGAACCAGGCGAGCT	61.395	66.667	0.00	0.00	38.79	4.09
601	951	1.375523	CGCTACCGGACAAAAGCCT	60.376	57.895	9.46	0.00	0.00	4.58
676	1026	6.985117	ACGCGTCATTTTAGGGATAAGTATA	58.015	36.000	5.58	0.00	0.00	1.47
680	1030	3.493503	GGACGCGTCATTTTAGGGATAAG	59.506	47.826	37.26	0.00	0.00	1.73
681	1031	3.460103	GGACGCGTCATTTTAGGGATAA	58.540	45.455	37.26	0.00	0.00	1.75
682	1032	2.544277	CGGACGCGTCATTTTAGGGATA	60.544	50.000	37.26	0.00	0.00	2.59
683	1033	1.805120	CGGACGCGTCATTTTAGGGAT	60.805	52.381	37.26	0.00	0.00	3.85
684	1034	0.458889	CGGACGCGTCATTTTAGGGA	60.459	55.000	37.26	0.00	0.00	4.20
685	1035	0.738412	ACGGACGCGTCATTTTAGGG	60.738	55.000	37.26	18.21	0.00	3.53
686	1036	1.073177	AACGGACGCGTCATTTTAGG	58.927	50.000	37.26	19.46	0.00	2.69
687	1037	2.492001	CAAACGGACGCGTCATTTTAG	58.508	47.619	37.26	22.99	0.00	1.85
688	1038	1.194997	CCAAACGGACGCGTCATTTTA	59.805	47.619	37.26	0.00	0.00	1.52
689	1039	0.040781	CCAAACGGACGCGTCATTTT	60.041	50.000	37.26	29.82	0.00	1.82
690	1040	1.572447	CCAAACGGACGCGTCATTT	59.428	52.632	37.26	31.00	0.00	2.32
691	1041	2.961669	GCCAAACGGACGCGTCATT	61.962	57.895	37.26	27.67	0.00	2.57
692	1042	3.419759	GCCAAACGGACGCGTCAT	61.420	61.111	37.26	23.74	0.00	3.06
709	1059	1.195448	CAGTAACAGCAGCCGACTTTG	59.805	52.381	0.00	0.00	0.00	2.77
710	1060	1.070134	TCAGTAACAGCAGCCGACTTT	59.930	47.619	0.00	0.00	0.00	2.66
715	1065	1.197721	CCTTTTCAGTAACAGCAGCCG	59.802	52.381	0.00	0.00	0.00	5.52
811	1161	3.006537	CGTGGAAAGAACTACTCCAGGAA	59.993	47.826	14.77	0.00	44.30	3.36
815	1165	1.001633	GCCGTGGAAAGAACTACTCCA	59.998	52.381	0.00	0.00	36.89	3.86
816	1166	1.001633	TGCCGTGGAAAGAACTACTCC	59.998	52.381	0.00	0.00	0.00	3.85
817	1167	2.067013	GTGCCGTGGAAAGAACTACTC	58.933	52.381	0.00	0.00	0.00	2.59
818	1168	1.604693	CGTGCCGTGGAAAGAACTACT	60.605	52.381	0.00	0.00	0.00	2.57
819	1169	0.788391	CGTGCCGTGGAAAGAACTAC	59.212	55.000	0.00	0.00	0.00	2.73
962	1349	3.558411	GAGCGTGATCAGCGGTGC	61.558	66.667	21.21	10.29	40.26	5.01
972	1359	2.729491	CGCAAGTCGTGAGCGTGA	60.729	61.111	0.00	0.00	45.82	4.35
1646	2041	0.319555	CACCTTCTTCTTCGTCGCCA	60.320	55.000	0.00	0.00	0.00	5.69
1815	2218	6.984474	ACAATCGTTTTACAAGAGAGAGTTGA	59.016	34.615	0.00	0.00	0.00	3.18
1853	2260	8.899427	TTTTGAAATACTGCATTGAATTCCAA	57.101	26.923	2.27	0.00	39.41	3.53
1953	3247	5.411361	TCATGATTCTTTTCGAACCAACGAT	59.589	36.000	0.00	0.00	41.82	3.73
1955	3249	5.029650	TCATGATTCTTTTCGAACCAACG	57.970	39.130	0.00	0.00	33.72	4.10
1956	3250	7.873739	AATTCATGATTCTTTTCGAACCAAC	57.126	32.000	0.00	0.00	33.72	3.77
1958	3252	8.560355	TCTAATTCATGATTCTTTTCGAACCA	57.440	30.769	0.00	0.00	33.72	3.67
1991	3287	9.146984	TCTGAAATTCATGAAATTTTCTGATGC	57.853	29.630	25.06	8.99	45.47	3.91
2045	3345	9.940518	GAAATGCACAAACTTTTTCAAATTTTG	57.059	25.926	2.59	2.59	34.10	2.44
2049	3349	9.688592	TTTTGAAATGCACAAACTTTTTCAAAT	57.311	22.222	24.40	0.00	46.81	2.32
2243	3544	6.597832	TTGTCTTTTCTGTTTTCTTTCCCA	57.402	33.333	0.00	0.00	0.00	4.37
2272	3573	5.885912	TGCTTTACTCAGGTTTTCTTCTGTT	59.114	36.000	0.00	0.00	33.13	3.16
2274	3575	6.429385	AGATGCTTTACTCAGGTTTTCTTCTG	59.571	38.462	0.00	0.00	0.00	3.02
2305	3606	9.357652	CCAGTGGTGTATTATGATTTTTGAAAG	57.642	33.333	0.00	0.00	0.00	2.62
2314	3615	3.803715	GCGAGCCAGTGGTGTATTATGAT	60.804	47.826	11.74	0.00	0.00	2.45
2315	3616	2.483013	GCGAGCCAGTGGTGTATTATGA	60.483	50.000	11.74	0.00	0.00	2.15
2316	3617	1.867233	GCGAGCCAGTGGTGTATTATG	59.133	52.381	11.74	0.00	0.00	1.90
2317	3618	1.538204	CGCGAGCCAGTGGTGTATTAT	60.538	52.381	11.74	0.00	0.00	1.28
2328	3629	1.080093	TGTAGGTTTCGCGAGCCAG	60.080	57.895	26.25	0.00	0.00	4.85
2331	3632	1.080025	AGGTGTAGGTTTCGCGAGC	60.080	57.895	9.59	6.56	0.00	5.03
2344	3645	1.597742	CAACTGTGCTTAGCAGGTGT	58.402	50.000	7.34	3.94	44.25	4.16
2348	3649	0.164647	GCGTCAACTGTGCTTAGCAG	59.835	55.000	7.34	0.00	40.08	4.24
2373	3674	9.142014	TGGTCCATTTGATTCTTCTTTCTTTTA	57.858	29.630	0.00	0.00	0.00	1.52
2382	3683	7.410120	AATAAGGTGGTCCATTTGATTCTTC	57.590	36.000	0.00	0.00	35.89	2.87
2396	3697	4.876107	CAGCTACATCGAAAATAAGGTGGT	59.124	41.667	0.00	0.00	0.00	4.16
2400	3701	6.238211	CCAAGACAGCTACATCGAAAATAAGG	60.238	42.308	0.00	0.00	0.00	2.69
2403	3704	5.105106	TCCCAAGACAGCTACATCGAAAATA	60.105	40.000	0.00	0.00	0.00	1.40
2409	3710	1.202463	CCTCCCAAGACAGCTACATCG	60.202	57.143	0.00	0.00	0.00	3.84
2410	3711	1.139853	CCCTCCCAAGACAGCTACATC	59.860	57.143	0.00	0.00	0.00	3.06
2417	3718	2.046892	CGCACCCTCCCAAGACAG	60.047	66.667	0.00	0.00	0.00	3.51
2421	3722	2.359975	GGTTCGCACCCTCCCAAG	60.360	66.667	0.00	0.00	37.03	3.61
2450	3751	4.298332	CTTTTGGCGACATTTATATGCCC	58.702	43.478	0.00	0.00	45.12	5.36
2467	3768	9.599322	CATATTTACTCCTATTTAGCGCTTTTG	57.401	33.333	18.68	2.00	0.00	2.44
2469	3770	9.726438	ATCATATTTACTCCTATTTAGCGCTTT	57.274	29.630	18.68	3.47	0.00	3.51
2481	3782	7.878127	CGACCATAACCAATCATATTTACTCCT	59.122	37.037	0.00	0.00	0.00	3.69
2490	3791	6.098552	TCACTAACCGACCATAACCAATCATA	59.901	38.462	0.00	0.00	0.00	2.15
2492	3793	4.223255	TCACTAACCGACCATAACCAATCA	59.777	41.667	0.00	0.00	0.00	2.57
2501	3802	0.108804	CGCTGTCACTAACCGACCAT	60.109	55.000	0.00	0.00	32.15	3.55
2523	3824	1.069765	CATAGATCCAACCGGCGCT	59.930	57.895	7.64	0.00	0.00	5.92
2594	3896	1.207329	ACCTTAAAGCGAGGCAGTAGG	59.793	52.381	0.00	0.00	37.84	3.18
2599	3901	2.295070	GGAAAAACCTTAAAGCGAGGCA	59.705	45.455	0.00	0.00	37.84	4.75
2607	3909	6.063404	ACTGTATGGACGGAAAAACCTTAAA	58.937	36.000	0.00	0.00	35.72	1.52
2609	3911	5.231702	ACTGTATGGACGGAAAAACCTTA	57.768	39.130	0.00	0.00	35.72	2.69
2622	3924	1.006281	ACCGGTCCAGTACTGTATGGA	59.994	52.381	21.18	9.69	43.34	3.41
2639	3941	0.460987	GAGCACTGAGGAATGGACCG	60.461	60.000	0.00	0.00	34.73	4.79
2652	3954	2.833794	TCTAGCAAACAAACGAGCACT	58.166	42.857	0.00	0.00	0.00	4.40
2663	3965	7.391786	CGTACTCAAACACATATCTAGCAAAC	58.608	38.462	0.00	0.00	0.00	2.93
2708	4010	8.893727	AGAGAAAATCGAAGAAGAAACAAAGAA	58.106	29.630	0.00	0.00	43.58	2.52
2710	4012	7.589221	CCAGAGAAAATCGAAGAAGAAACAAAG	59.411	37.037	0.00	0.00	43.58	2.77
2723	4025	6.055588	AGACAAAGAAACCAGAGAAAATCGA	58.944	36.000	0.00	0.00	0.00	3.59
2724	4026	6.305693	AGACAAAGAAACCAGAGAAAATCG	57.694	37.500	0.00	0.00	0.00	3.34
2728	4030	5.646360	ACGAAAGACAAAGAAACCAGAGAAA	59.354	36.000	0.00	0.00	0.00	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.