Multiple sequence alignment - TraesCS6D01G073800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G073800 chr6D 100.000 2222 0 0 1 2222 37708251 37710472 0.000000e+00 4104.0
1 TraesCS6D01G073800 chr6D 96.825 252 7 1 1950 2201 37712806 37712556 9.490000e-114 420.0
2 TraesCS6D01G073800 chr6B 91.429 805 45 10 436 1230 88352633 88353423 0.000000e+00 1083.0
3 TraesCS6D01G073800 chr6B 94.271 576 20 7 1383 1953 88411735 88412302 0.000000e+00 869.0
4 TraesCS6D01G073800 chr6B 91.552 580 32 11 1383 1953 88353420 88353991 0.000000e+00 784.0
5 TraesCS6D01G073800 chr6B 95.052 384 14 1 852 1230 88411355 88411738 1.140000e-167 599.0
6 TraesCS6D01G073800 chr6B 89.882 425 41 2 7 430 88329058 88329481 1.500000e-151 545.0
7 TraesCS6D01G073800 chr6B 87.437 199 19 1 436 628 88396788 88396986 7.980000e-55 224.0
8 TraesCS6D01G073800 chr6B 86.096 187 24 2 1 185 400355185 400354999 1.350000e-47 200.0
9 TraesCS6D01G073800 chr6B 100.000 30 0 0 1516 1545 88353611 88353640 3.080000e-04 56.5
10 TraesCS6D01G073800 chr6A 90.841 797 34 10 436 1229 49127736 49128496 0.000000e+00 1031.0
11 TraesCS6D01G073800 chr6A 90.972 432 37 2 1 430 49125478 49125909 4.110000e-162 580.0
12 TraesCS6D01G073800 chr6A 86.308 409 31 13 1562 1953 49128738 49129138 2.640000e-114 422.0
13 TraesCS6D01G073800 chr6A 90.863 197 9 3 1383 1578 49128494 49128682 2.830000e-64 255.0
14 TraesCS6D01G073800 chrUn 90.306 392 31 2 436 820 469476228 469475837 7.080000e-140 507.0
15 TraesCS6D01G073800 chr7D 96.727 275 6 3 1950 2222 635447932 635448205 2.600000e-124 455.0
16 TraesCS6D01G073800 chr7D 96.727 275 6 3 1950 2222 635469308 635469581 2.600000e-124 455.0
17 TraesCS6D01G073800 chr7D 96.078 204 6 2 2020 2222 156859868 156860070 4.570000e-87 331.0
18 TraesCS6D01G073800 chr7D 85.232 237 35 0 194 430 49389444 49389208 6.130000e-61 244.0
19 TraesCS6D01G073800 chr7D 85.393 89 9 4 1297 1382 599589235 599589148 3.040000e-14 89.8
20 TraesCS6D01G073800 chr3A 88.186 237 28 0 194 430 21328583 21328819 1.300000e-72 283.0
21 TraesCS6D01G073800 chr5B 78.166 458 70 17 3 430 234088789 234089246 4.700000e-67 265.0
22 TraesCS6D01G073800 chr5B 85.232 237 33 2 193 428 631459099 631458864 2.200000e-60 243.0
23 TraesCS6D01G073800 chr5A 85.830 247 34 1 184 430 37498677 37498922 6.090000e-66 261.0
24 TraesCS6D01G073800 chr5A 85.263 95 9 4 1294 1384 335288075 335288168 2.350000e-15 93.5
25 TraesCS6D01G073800 chr4A 85.774 239 26 7 194 430 626016816 626016584 1.700000e-61 246.0
26 TraesCS6D01G073800 chr3B 84.774 243 37 0 184 426 646749579 646749337 6.130000e-61 244.0
27 TraesCS6D01G073800 chr3B 82.353 102 12 6 1289 1385 696974692 696974792 1.410000e-12 84.2
28 TraesCS6D01G073800 chr3D 84.211 247 39 0 184 430 424894657 424894411 7.930000e-60 241.0
29 TraesCS6D01G073800 chr3D 87.500 96 7 5 1297 1388 610893071 610892977 3.020000e-19 106.0
30 TraesCS6D01G073800 chr3D 85.567 97 9 5 1294 1386 371368695 371368790 1.820000e-16 97.1
31 TraesCS6D01G073800 chr2A 88.830 188 19 2 1 186 303738642 303738455 1.720000e-56 230.0
32 TraesCS6D01G073800 chr2D 87.766 188 21 2 1 186 262456851 262456664 3.710000e-53 219.0
33 TraesCS6D01G073800 chr2D 85.561 187 25 2 1 185 334313530 334313344 6.260000e-46 195.0
34 TraesCS6D01G073800 chr1B 86.096 187 23 3 1 185 68049540 68049355 4.840000e-47 198.0
35 TraesCS6D01G073800 chr1D 85.561 187 25 2 1 185 474263458 474263644 6.260000e-46 195.0
36 TraesCS6D01G073800 chr1D 87.500 88 9 2 1297 1383 475818291 475818205 1.400000e-17 100.0
37 TraesCS6D01G073800 chr1D 93.846 65 3 1 1230 1294 285049804 285049867 1.820000e-16 97.1
38 TraesCS6D01G073800 chr1D 87.755 49 4 2 1247 1294 434232642 434232595 3.080000e-04 56.5
39 TraesCS6D01G073800 chr7B 85.263 95 8 5 1294 1384 458859426 458859518 2.350000e-15 93.5
40 TraesCS6D01G073800 chr7B 85.106 94 9 4 1294 1383 612900760 612900852 8.450000e-15 91.6
41 TraesCS6D01G073800 chr4B 84.536 97 6 6 1297 1384 277321760 277321664 1.090000e-13 87.9
42 TraesCS6D01G073800 chr2B 82.653 98 17 0 1856 1953 42929719 42929816 1.090000e-13 87.9
43 TraesCS6D01G073800 chr7A 97.059 34 1 0 1920 1953 57099534 57099501 8.570000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G073800 chr6D 37708251 37710472 2221 False 4104.000000 4104 100.0000 1 2222 1 chr6D.!!$F1 2221
1 TraesCS6D01G073800 chr6B 88411355 88412302 947 False 734.000000 869 94.6615 852 1953 2 chr6B.!!$F4 1101
2 TraesCS6D01G073800 chr6B 88352633 88353991 1358 False 641.166667 1083 94.3270 436 1953 3 chr6B.!!$F3 1517
3 TraesCS6D01G073800 chr6A 49125478 49129138 3660 False 572.000000 1031 89.7460 1 1953 4 chr6A.!!$F1 1952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 437 0.029035 GCAAGCATCCGCAATCTCAG 59.971 55.0 0.0 0.0 42.27 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 3960 0.027194 CATTCAATGCGTCTGGCTCG 59.973 55.0 0.0 0.0 44.05 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.937799 CCATTGGCATTATTGTTGCACC 59.062 45.455 0.00 0.00 41.95 5.01
56 57 3.075148 GGAGCTTGTCCTTCAGTTAACC 58.925 50.000 0.88 0.00 42.99 2.85
66 67 5.705905 GTCCTTCAGTTAACCTAGCAAACAT 59.294 40.000 0.88 0.00 0.00 2.71
67 68 5.705441 TCCTTCAGTTAACCTAGCAAACATG 59.295 40.000 0.88 0.00 0.00 3.21
68 69 5.705441 CCTTCAGTTAACCTAGCAAACATGA 59.295 40.000 0.00 0.00 0.00 3.07
71 72 5.932303 TCAGTTAACCTAGCAAACATGAGAC 59.068 40.000 0.00 0.00 0.00 3.36
72 73 5.122396 CAGTTAACCTAGCAAACATGAGACC 59.878 44.000 0.00 0.00 0.00 3.85
73 74 2.386661 ACCTAGCAAACATGAGACCG 57.613 50.000 0.00 0.00 0.00 4.79
74 75 1.623811 ACCTAGCAAACATGAGACCGT 59.376 47.619 0.00 0.00 0.00 4.83
75 76 2.038557 ACCTAGCAAACATGAGACCGTT 59.961 45.455 0.00 0.00 0.00 4.44
76 77 2.416547 CCTAGCAAACATGAGACCGTTG 59.583 50.000 0.00 0.00 0.00 4.10
77 78 0.593128 AGCAAACATGAGACCGTTGC 59.407 50.000 0.00 5.41 0.00 4.17
95 98 3.224884 TGCAGCACATTGATGTCATTG 57.775 42.857 0.00 3.97 39.39 2.82
104 107 2.385013 TGATGTCATTGTGAGACCCG 57.615 50.000 0.00 0.00 35.15 5.28
106 109 1.207089 GATGTCATTGTGAGACCCGGA 59.793 52.381 0.73 0.00 35.15 5.14
116 119 1.002134 AGACCCGGACATGCCAAAG 60.002 57.895 0.73 0.00 35.94 2.77
120 123 0.527565 CCCGGACATGCCAAAGAAAG 59.472 55.000 0.73 0.00 35.94 2.62
128 131 0.746063 TGCCAAAGAAAGTGTGCCAG 59.254 50.000 0.00 0.00 0.00 4.85
134 137 2.486472 AGAAAGTGTGCCAGATCCAG 57.514 50.000 0.00 0.00 0.00 3.86
164 167 6.072112 TGTGGTGCAACTTCTTTAAGAATC 57.928 37.500 7.92 0.00 33.13 2.52
191 194 2.101415 GGGCTTCTTAACATGGGCAATC 59.899 50.000 0.00 0.00 0.00 2.67
202 205 3.117246 ACATGGGCAATCATTCCATCTCT 60.117 43.478 0.00 0.00 39.07 3.10
216 219 3.135167 TCCATCTCTAGTGCATGCAATCA 59.865 43.478 25.74 11.62 0.00 2.57
238 241 0.179018 AAATCCGAGCATACCTGGCC 60.179 55.000 0.00 0.00 0.00 5.36
239 242 1.344953 AATCCGAGCATACCTGGCCA 61.345 55.000 4.71 4.71 0.00 5.36
253 256 2.747855 GCCACCCTCTTGCTTCGG 60.748 66.667 0.00 0.00 0.00 4.30
274 277 0.174162 AATTGCCATGAGCCTTTCGC 59.826 50.000 0.00 0.00 42.71 4.70
305 308 6.809196 GTGATAGTTGGTTCTCTCAAGTACTG 59.191 42.308 0.00 0.00 34.20 2.74
329 332 0.395312 CCAAACACCTAGACCACCGT 59.605 55.000 0.00 0.00 0.00 4.83
350 353 4.680708 CGTAGTAGCAAATCTGACCATGGT 60.681 45.833 19.89 19.89 0.00 3.55
400 403 2.695666 AGGTACTCGTCCCATGAATCTG 59.304 50.000 0.00 0.00 0.00 2.90
404 407 1.482182 CTCGTCCCATGAATCTGTGGA 59.518 52.381 0.00 0.00 37.72 4.02
406 409 1.656652 GTCCCATGAATCTGTGGACG 58.343 55.000 0.00 0.00 37.72 4.79
407 410 1.066143 GTCCCATGAATCTGTGGACGT 60.066 52.381 0.00 0.00 37.72 4.34
430 433 2.592194 CATATGCAAGCATCCGCAATC 58.408 47.619 11.32 0.00 42.37 2.67
431 434 1.971481 TATGCAAGCATCCGCAATCT 58.029 45.000 11.32 0.00 42.37 2.40
432 435 0.666913 ATGCAAGCATCCGCAATCTC 59.333 50.000 0.86 0.00 42.37 2.75
433 436 0.677414 TGCAAGCATCCGCAATCTCA 60.677 50.000 0.00 0.00 42.27 3.27
434 437 0.029035 GCAAGCATCCGCAATCTCAG 59.971 55.000 0.00 0.00 42.27 3.35
444 2268 4.264253 TCCGCAATCTCAGACATTGATTT 58.736 39.130 2.73 0.00 34.68 2.17
450 2274 6.678900 GCAATCTCAGACATTGATTTGGTACC 60.679 42.308 4.43 4.43 34.68 3.34
479 2303 8.725148 TGAAAATTGTGTGCAACTTTATGTTTT 58.275 25.926 0.00 0.00 34.68 2.43
499 2323 6.926272 TGTTTTAAAAATAAGATGCGCAACCT 59.074 30.769 17.11 12.50 0.00 3.50
615 2446 8.218338 ACTGAAATAGCAAATCATCAGTTAGG 57.782 34.615 11.49 0.00 43.50 2.69
657 2488 8.759641 GCTAGCATATCGATATATCCAAAAGTG 58.240 37.037 17.35 4.50 0.00 3.16
724 2555 4.077300 TCGATCCATGCTTAAGCTCAAT 57.923 40.909 26.90 15.09 42.66 2.57
792 2623 8.824756 AGAGAGATACCATGTACTAAAACTGA 57.175 34.615 0.00 0.00 0.00 3.41
831 2662 2.876550 ACCGTACAAACTTTGAAGAGCC 59.123 45.455 8.55 0.00 0.00 4.70
833 2664 3.564225 CCGTACAAACTTTGAAGAGCCTT 59.436 43.478 8.55 0.00 0.00 4.35
837 2668 6.128795 CGTACAAACTTTGAAGAGCCTTCTAG 60.129 42.308 8.55 12.72 31.96 2.43
838 2669 4.517075 ACAAACTTTGAAGAGCCTTCTAGC 59.483 41.667 8.55 0.00 31.96 3.42
839 2670 4.357918 AACTTTGAAGAGCCTTCTAGCA 57.642 40.909 13.76 0.00 31.96 3.49
840 2671 4.357918 ACTTTGAAGAGCCTTCTAGCAA 57.642 40.909 13.76 2.98 31.96 3.91
841 2672 4.322567 ACTTTGAAGAGCCTTCTAGCAAG 58.677 43.478 13.76 12.15 32.73 4.01
842 2673 2.393271 TGAAGAGCCTTCTAGCAAGC 57.607 50.000 13.76 0.00 31.96 4.01
843 2674 1.065854 TGAAGAGCCTTCTAGCAAGCC 60.066 52.381 13.76 0.00 31.96 4.35
844 2675 0.254462 AAGAGCCTTCTAGCAAGCCC 59.746 55.000 0.00 0.00 31.96 5.19
845 2676 1.153066 GAGCCTTCTAGCAAGCCCC 60.153 63.158 0.00 0.00 34.23 5.80
846 2677 1.617839 AGCCTTCTAGCAAGCCCCT 60.618 57.895 0.00 0.00 34.23 4.79
847 2678 1.452833 GCCTTCTAGCAAGCCCCTG 60.453 63.158 0.00 0.00 0.00 4.45
848 2679 1.915078 GCCTTCTAGCAAGCCCCTGA 61.915 60.000 0.00 0.00 0.00 3.86
849 2680 0.107459 CCTTCTAGCAAGCCCCTGAC 60.107 60.000 0.00 0.00 0.00 3.51
850 2681 0.107459 CTTCTAGCAAGCCCCTGACC 60.107 60.000 0.00 0.00 0.00 4.02
921 2752 3.508762 ACCAATTCTCTACTTACGCGTG 58.491 45.455 24.59 8.81 0.00 5.34
952 2783 1.936658 CATCCGTGCATGGTGATCG 59.063 57.895 24.24 4.13 0.00 3.69
1008 2844 1.376942 GCTGCAGGTGATGAGCACT 60.377 57.895 17.12 0.00 46.86 4.40
1230 3066 2.297315 TGTCATCGGATAGCCAGCTAAG 59.703 50.000 3.02 0.00 31.73 2.18
1231 3067 1.895798 TCATCGGATAGCCAGCTAAGG 59.104 52.381 3.02 0.00 31.73 2.69
1232 3068 1.066573 CATCGGATAGCCAGCTAAGGG 60.067 57.143 3.02 0.00 31.73 3.95
1238 3074 4.426313 GCCAGCTAAGGGCCGGTT 62.426 66.667 1.90 0.00 45.87 4.44
1239 3075 2.124695 CCAGCTAAGGGCCGGTTC 60.125 66.667 1.90 0.00 43.05 3.62
1240 3076 2.670148 CCAGCTAAGGGCCGGTTCT 61.670 63.158 1.90 0.00 43.05 3.01
1241 3077 1.299976 CAGCTAAGGGCCGGTTCTT 59.700 57.895 1.90 9.94 43.05 2.52
1242 3078 0.322546 CAGCTAAGGGCCGGTTCTTT 60.323 55.000 14.75 7.86 43.05 2.52
1243 3079 0.404426 AGCTAAGGGCCGGTTCTTTT 59.596 50.000 14.75 1.40 43.05 2.27
1244 3080 0.526211 GCTAAGGGCCGGTTCTTTTG 59.474 55.000 14.75 7.53 34.27 2.44
1245 3081 0.526211 CTAAGGGCCGGTTCTTTTGC 59.474 55.000 14.75 0.00 0.00 3.68
1246 3082 0.111639 TAAGGGCCGGTTCTTTTGCT 59.888 50.000 14.75 0.00 0.00 3.91
1247 3083 0.111639 AAGGGCCGGTTCTTTTGCTA 59.888 50.000 1.90 0.00 0.00 3.49
1248 3084 0.322546 AGGGCCGGTTCTTTTGCTAG 60.323 55.000 1.90 0.00 0.00 3.42
1249 3085 1.506718 GGCCGGTTCTTTTGCTAGC 59.493 57.895 8.10 8.10 0.00 3.42
1250 3086 0.960861 GGCCGGTTCTTTTGCTAGCT 60.961 55.000 17.23 0.00 0.00 3.32
1251 3087 0.881796 GCCGGTTCTTTTGCTAGCTT 59.118 50.000 17.23 0.00 0.00 3.74
1252 3088 1.269723 GCCGGTTCTTTTGCTAGCTTT 59.730 47.619 17.23 0.00 0.00 3.51
1253 3089 2.288213 GCCGGTTCTTTTGCTAGCTTTT 60.288 45.455 17.23 0.00 0.00 2.27
1254 3090 3.798889 GCCGGTTCTTTTGCTAGCTTTTT 60.799 43.478 17.23 0.00 0.00 1.94
1276 3112 3.855689 TTGGCTTTCAGAATAAGCTGC 57.144 42.857 6.77 0.00 45.62 5.25
1277 3113 3.077484 TGGCTTTCAGAATAAGCTGCT 57.923 42.857 0.00 0.00 45.62 4.24
1278 3114 3.012518 TGGCTTTCAGAATAAGCTGCTC 58.987 45.455 1.00 0.00 45.62 4.26
1279 3115 3.277715 GGCTTTCAGAATAAGCTGCTCT 58.722 45.455 1.00 0.00 45.62 4.09
1280 3116 3.312146 GGCTTTCAGAATAAGCTGCTCTC 59.688 47.826 1.00 0.15 45.62 3.20
1281 3117 4.190772 GCTTTCAGAATAAGCTGCTCTCT 58.809 43.478 1.00 2.75 43.56 3.10
1282 3118 5.355596 GCTTTCAGAATAAGCTGCTCTCTA 58.644 41.667 1.00 0.00 43.56 2.43
1283 3119 5.234116 GCTTTCAGAATAAGCTGCTCTCTAC 59.766 44.000 1.00 0.00 43.56 2.59
1284 3120 4.927978 TCAGAATAAGCTGCTCTCTACC 57.072 45.455 1.00 0.00 35.86 3.18
1285 3121 3.639094 TCAGAATAAGCTGCTCTCTACCC 59.361 47.826 1.00 0.00 35.86 3.69
1286 3122 3.386078 CAGAATAAGCTGCTCTCTACCCA 59.614 47.826 1.00 0.00 0.00 4.51
1287 3123 3.640967 AGAATAAGCTGCTCTCTACCCAG 59.359 47.826 1.00 0.00 0.00 4.45
1289 3125 3.627690 GCTGCTCTCTACCCAGCT 58.372 61.111 4.74 0.00 46.28 4.24
1290 3126 1.904032 GCTGCTCTCTACCCAGCTT 59.096 57.895 4.74 0.00 46.28 3.74
1291 3127 1.115467 GCTGCTCTCTACCCAGCTTA 58.885 55.000 4.74 0.00 46.28 3.09
1292 3128 1.691434 GCTGCTCTCTACCCAGCTTAT 59.309 52.381 4.74 0.00 46.28 1.73
1293 3129 2.103941 GCTGCTCTCTACCCAGCTTATT 59.896 50.000 4.74 0.00 46.28 1.40
1294 3130 3.322254 GCTGCTCTCTACCCAGCTTATTA 59.678 47.826 4.74 0.00 46.28 0.98
1295 3131 4.560513 GCTGCTCTCTACCCAGCTTATTAG 60.561 50.000 4.74 0.00 46.28 1.73
1296 3132 4.547671 TGCTCTCTACCCAGCTTATTAGT 58.452 43.478 0.00 0.00 36.53 2.24
1297 3133 5.702266 TGCTCTCTACCCAGCTTATTAGTA 58.298 41.667 0.00 0.00 36.53 1.82
1298 3134 5.770663 TGCTCTCTACCCAGCTTATTAGTAG 59.229 44.000 0.00 0.00 36.53 2.57
1299 3135 5.184287 GCTCTCTACCCAGCTTATTAGTAGG 59.816 48.000 0.00 0.00 32.95 3.18
1300 3136 5.078256 TCTCTACCCAGCTTATTAGTAGGC 58.922 45.833 0.00 0.00 32.95 3.93
1301 3137 5.076057 TCTACCCAGCTTATTAGTAGGCT 57.924 43.478 0.00 0.00 43.27 4.58
1302 3138 5.464984 TCTACCCAGCTTATTAGTAGGCTT 58.535 41.667 0.00 0.00 40.85 4.35
1303 3139 5.903589 TCTACCCAGCTTATTAGTAGGCTTT 59.096 40.000 0.00 0.00 40.85 3.51
1304 3140 7.071273 TCTACCCAGCTTATTAGTAGGCTTTA 58.929 38.462 0.00 0.00 40.85 1.85
1305 3141 6.570654 ACCCAGCTTATTAGTAGGCTTTAA 57.429 37.500 0.00 0.00 40.85 1.52
1306 3142 6.965607 ACCCAGCTTATTAGTAGGCTTTAAA 58.034 36.000 0.00 0.00 40.85 1.52
1307 3143 7.407729 ACCCAGCTTATTAGTAGGCTTTAAAA 58.592 34.615 0.00 0.00 40.85 1.52
1308 3144 7.891712 ACCCAGCTTATTAGTAGGCTTTAAAAA 59.108 33.333 0.00 0.00 40.85 1.94
1331 3167 6.590234 AAAAATTGGTTCGGCTTCTAGAAT 57.410 33.333 5.44 0.00 0.00 2.40
1332 3168 7.696992 AAAAATTGGTTCGGCTTCTAGAATA 57.303 32.000 5.44 0.00 0.00 1.75
1333 3169 7.696992 AAAATTGGTTCGGCTTCTAGAATAA 57.303 32.000 5.44 0.00 0.00 1.40
1334 3170 6.927294 AATTGGTTCGGCTTCTAGAATAAG 57.073 37.500 5.44 0.00 0.00 1.73
1335 3171 3.793559 TGGTTCGGCTTCTAGAATAAGC 58.206 45.455 5.44 5.98 46.90 3.09
1336 3172 3.451178 TGGTTCGGCTTCTAGAATAAGCT 59.549 43.478 13.28 0.00 46.81 3.74
1340 3176 3.847671 GGCTTCTAGAATAAGCTGGGT 57.152 47.619 13.28 0.00 46.81 4.51
1341 3177 4.957684 GGCTTCTAGAATAAGCTGGGTA 57.042 45.455 13.28 0.00 46.81 3.69
1342 3178 4.888917 GGCTTCTAGAATAAGCTGGGTAG 58.111 47.826 13.28 0.00 46.81 3.18
1361 3197 6.973460 GGTAGCTACCCAGTTTATTCTAGA 57.027 41.667 29.68 0.00 40.53 2.43
1362 3198 7.357429 GGTAGCTACCCAGTTTATTCTAGAA 57.643 40.000 29.68 7.82 40.53 2.10
1363 3199 7.435305 GGTAGCTACCCAGTTTATTCTAGAAG 58.565 42.308 29.68 0.00 40.53 2.85
1364 3200 5.919755 AGCTACCCAGTTTATTCTAGAAGC 58.080 41.667 11.53 4.05 0.00 3.86
1365 3201 5.057819 GCTACCCAGTTTATTCTAGAAGCC 58.942 45.833 11.53 0.00 0.00 4.35
1366 3202 5.396436 GCTACCCAGTTTATTCTAGAAGCCA 60.396 44.000 11.53 0.00 0.00 4.75
1367 3203 4.844884 ACCCAGTTTATTCTAGAAGCCAC 58.155 43.478 11.53 6.92 0.00 5.01
1368 3204 4.200092 CCCAGTTTATTCTAGAAGCCACC 58.800 47.826 11.53 0.00 0.00 4.61
1369 3205 4.324254 CCCAGTTTATTCTAGAAGCCACCA 60.324 45.833 11.53 0.00 0.00 4.17
1370 3206 5.253330 CCAGTTTATTCTAGAAGCCACCAA 58.747 41.667 11.53 0.00 0.00 3.67
1371 3207 5.710099 CCAGTTTATTCTAGAAGCCACCAAA 59.290 40.000 11.53 2.09 0.00 3.28
1372 3208 6.208599 CCAGTTTATTCTAGAAGCCACCAAAA 59.791 38.462 11.53 0.86 0.00 2.44
1373 3209 7.308435 CAGTTTATTCTAGAAGCCACCAAAAG 58.692 38.462 11.53 0.00 0.00 2.27
1374 3210 7.174946 CAGTTTATTCTAGAAGCCACCAAAAGA 59.825 37.037 11.53 0.00 0.00 2.52
1375 3211 7.724061 AGTTTATTCTAGAAGCCACCAAAAGAA 59.276 33.333 11.53 0.00 0.00 2.52
1376 3212 5.966742 ATTCTAGAAGCCACCAAAAGAAC 57.033 39.130 11.53 0.00 0.00 3.01
1377 3213 4.706842 TCTAGAAGCCACCAAAAGAACT 57.293 40.909 0.00 0.00 0.00 3.01
1378 3214 4.389374 TCTAGAAGCCACCAAAAGAACTG 58.611 43.478 0.00 0.00 0.00 3.16
1379 3215 2.310538 AGAAGCCACCAAAAGAACTGG 58.689 47.619 0.00 0.00 40.05 4.00
1381 3217 1.367471 GCCACCAAAAGAACTGGCC 59.633 57.895 0.00 0.00 43.01 5.36
1382 3218 2.049435 CCACCAAAAGAACTGGCCC 58.951 57.895 0.00 0.00 37.48 5.80
1383 3219 0.469892 CCACCAAAAGAACTGGCCCT 60.470 55.000 0.00 0.00 37.48 5.19
1384 3220 1.203001 CCACCAAAAGAACTGGCCCTA 60.203 52.381 0.00 0.00 37.48 3.53
1385 3221 2.593026 CACCAAAAGAACTGGCCCTAA 58.407 47.619 0.00 0.00 37.48 2.69
1386 3222 2.296190 CACCAAAAGAACTGGCCCTAAC 59.704 50.000 0.00 0.00 37.48 2.34
1387 3223 2.177016 ACCAAAAGAACTGGCCCTAACT 59.823 45.455 0.00 0.00 37.48 2.24
1388 3224 3.230976 CCAAAAGAACTGGCCCTAACTT 58.769 45.455 0.00 0.00 0.00 2.66
1389 3225 3.005791 CCAAAAGAACTGGCCCTAACTTG 59.994 47.826 0.00 0.00 0.00 3.16
1390 3226 2.586648 AAGAACTGGCCCTAACTTGG 57.413 50.000 0.00 0.00 0.00 3.61
1475 3319 9.982291 GTTTTCTCTTGTAATAACAATATCGCA 57.018 29.630 0.00 0.00 44.43 5.10
1478 3322 8.942338 TCTCTTGTAATAACAATATCGCAAGT 57.058 30.769 0.00 0.00 44.43 3.16
1479 3323 9.378551 TCTCTTGTAATAACAATATCGCAAGTT 57.621 29.630 0.00 0.00 44.43 2.66
1480 3324 9.638300 CTCTTGTAATAACAATATCGCAAGTTC 57.362 33.333 0.00 0.00 44.43 3.01
1481 3325 8.325282 TCTTGTAATAACAATATCGCAAGTTCG 58.675 33.333 0.00 0.00 44.43 3.95
1482 3326 6.415702 TGTAATAACAATATCGCAAGTTCGC 58.584 36.000 0.00 0.00 32.87 4.70
1605 3526 2.240040 CGCGTGGCTATAGTAATCGTC 58.760 52.381 0.00 0.00 0.00 4.20
1684 3606 2.338500 GTAGTGGCTTGTCTACACAGC 58.662 52.381 0.00 8.06 37.58 4.40
1770 3712 1.274167 AGGATTAACGTGGCTTCGTGA 59.726 47.619 8.73 0.00 43.38 4.35
1795 3737 1.417890 ACAACTTGACTGACCCAGGAG 59.582 52.381 0.00 0.00 35.51 3.69
1822 3764 8.693120 TTATCTTCATAATCCTCTGTAGTCGT 57.307 34.615 0.00 0.00 0.00 4.34
1855 3797 6.032775 CGCATGTTTAATGTGAATCAAGACAC 59.967 38.462 0.00 0.00 37.51 3.67
1953 3896 4.394712 GGCCGTGGTGGTGGAGAG 62.395 72.222 0.00 0.00 41.21 3.20
1955 3898 3.625897 CCGTGGTGGTGGAGAGCA 61.626 66.667 0.00 0.00 0.00 4.26
1956 3899 2.047844 CGTGGTGGTGGAGAGCAG 60.048 66.667 0.00 0.00 0.00 4.24
1957 3900 2.359230 GTGGTGGTGGAGAGCAGC 60.359 66.667 0.00 0.00 46.15 5.25
1959 3902 3.695606 GGTGGTGGAGAGCAGCGA 61.696 66.667 0.00 0.00 38.24 4.93
1960 3903 2.581354 GTGGTGGAGAGCAGCGAT 59.419 61.111 0.00 0.00 0.00 4.58
1961 3904 1.676678 GGTGGTGGAGAGCAGCGATA 61.677 60.000 0.00 0.00 38.24 2.92
1962 3905 0.390860 GTGGTGGAGAGCAGCGATAT 59.609 55.000 0.00 0.00 0.00 1.63
1963 3906 0.390492 TGGTGGAGAGCAGCGATATG 59.610 55.000 0.00 0.00 0.00 1.78
1964 3907 0.320247 GGTGGAGAGCAGCGATATGG 60.320 60.000 0.00 0.00 0.00 2.74
1965 3908 0.948141 GTGGAGAGCAGCGATATGGC 60.948 60.000 0.72 0.72 0.00 4.40
1966 3909 1.117749 TGGAGAGCAGCGATATGGCT 61.118 55.000 6.38 6.38 46.13 4.75
1968 3911 3.853712 GAGCAGCGATATGGCTCG 58.146 61.111 9.54 6.97 43.83 5.03
1969 3912 1.006805 GAGCAGCGATATGGCTCGT 60.007 57.895 9.54 0.00 43.83 4.18
1970 3913 0.241213 GAGCAGCGATATGGCTCGTA 59.759 55.000 9.54 0.00 43.83 3.43
1971 3914 0.039074 AGCAGCGATATGGCTCGTAC 60.039 55.000 9.54 0.32 42.53 3.67
1972 3915 0.039074 GCAGCGATATGGCTCGTACT 60.039 55.000 9.54 0.00 42.53 2.73
1973 3916 1.199327 GCAGCGATATGGCTCGTACTA 59.801 52.381 9.54 0.00 42.53 1.82
1974 3917 2.852748 CAGCGATATGGCTCGTACTAC 58.147 52.381 9.54 0.00 42.53 2.73
1975 3918 2.484651 CAGCGATATGGCTCGTACTACT 59.515 50.000 9.54 0.00 42.53 2.57
1976 3919 3.683340 CAGCGATATGGCTCGTACTACTA 59.317 47.826 9.54 0.00 42.53 1.82
1977 3920 4.333095 CAGCGATATGGCTCGTACTACTAT 59.667 45.833 9.54 0.00 42.53 2.12
1978 3921 5.522824 CAGCGATATGGCTCGTACTACTATA 59.477 44.000 9.54 0.00 42.53 1.31
1979 3922 6.203145 CAGCGATATGGCTCGTACTACTATAT 59.797 42.308 9.54 0.00 42.53 0.86
1980 3923 7.384387 CAGCGATATGGCTCGTACTACTATATA 59.616 40.741 9.54 0.00 42.53 0.86
1981 3924 7.599621 AGCGATATGGCTCGTACTACTATATAG 59.400 40.741 6.38 8.27 39.61 1.31
1982 3925 7.384660 GCGATATGGCTCGTACTACTATATAGT 59.615 40.741 19.07 19.07 40.73 2.12
1983 3926 8.914654 CGATATGGCTCGTACTACTATATAGTC 58.085 40.741 18.68 4.14 34.64 2.59
1984 3927 9.206870 GATATGGCTCGTACTACTATATAGTCC 57.793 40.741 18.68 11.48 37.73 3.85
1985 3928 5.738909 TGGCTCGTACTACTATATAGTCCC 58.261 45.833 18.68 8.22 37.73 4.46
1986 3929 5.249163 TGGCTCGTACTACTATATAGTCCCA 59.751 44.000 18.68 10.28 37.73 4.37
1987 3930 6.069789 TGGCTCGTACTACTATATAGTCCCAT 60.070 42.308 18.68 6.10 37.73 4.00
1988 3931 6.827762 GGCTCGTACTACTATATAGTCCCATT 59.172 42.308 18.68 0.00 37.73 3.16
1989 3932 7.989741 GGCTCGTACTACTATATAGTCCCATTA 59.010 40.741 18.68 0.00 37.73 1.90
1990 3933 9.558396 GCTCGTACTACTATATAGTCCCATTAT 57.442 37.037 18.68 1.63 37.73 1.28
2002 3945 5.165961 AGTCCCATTATCATATCCGTTGG 57.834 43.478 0.00 0.00 0.00 3.77
2003 3946 4.597507 AGTCCCATTATCATATCCGTTGGT 59.402 41.667 0.00 0.00 0.00 3.67
2004 3947 4.935808 GTCCCATTATCATATCCGTTGGTC 59.064 45.833 0.00 0.00 0.00 4.02
2005 3948 3.932710 CCCATTATCATATCCGTTGGTCG 59.067 47.826 0.00 0.00 39.52 4.79
2014 3957 3.554692 CGTTGGTCGGCGCAGATC 61.555 66.667 14.65 14.46 35.71 2.75
2015 3958 2.434185 GTTGGTCGGCGCAGATCA 60.434 61.111 19.85 19.85 0.00 2.92
2016 3959 2.125552 TTGGTCGGCGCAGATCAG 60.126 61.111 22.32 0.00 32.24 2.90
2017 3960 4.819761 TGGTCGGCGCAGATCAGC 62.820 66.667 19.85 4.66 0.00 4.26
2025 3968 2.498248 GCAGATCAGCGAGCCAGA 59.502 61.111 0.00 0.00 0.00 3.86
2026 3969 1.882167 GCAGATCAGCGAGCCAGAC 60.882 63.158 0.00 0.00 0.00 3.51
2027 3970 1.588403 CAGATCAGCGAGCCAGACG 60.588 63.158 0.00 0.00 0.00 4.18
2034 3977 3.874873 CGAGCCAGACGCATTGAA 58.125 55.556 0.00 0.00 41.38 2.69
2035 3978 2.387309 CGAGCCAGACGCATTGAAT 58.613 52.632 0.00 0.00 41.38 2.57
2036 3979 0.027194 CGAGCCAGACGCATTGAATG 59.973 55.000 0.00 0.00 41.38 2.67
2050 3993 5.490472 CATTGAATGCATATTAGCGTTGC 57.510 39.130 0.00 0.00 43.35 4.17
2051 3994 3.624326 TGAATGCATATTAGCGTTGCC 57.376 42.857 0.00 0.00 43.35 4.52
2052 3995 2.032117 TGAATGCATATTAGCGTTGCCG 60.032 45.455 0.00 0.00 43.35 5.69
2053 3996 0.874390 ATGCATATTAGCGTTGCCGG 59.126 50.000 0.00 0.00 37.31 6.13
2054 3997 1.082104 GCATATTAGCGTTGCCGGC 60.082 57.895 22.73 22.73 33.68 6.13
2055 3998 1.781025 GCATATTAGCGTTGCCGGCA 61.781 55.000 29.03 29.03 33.68 5.69
2056 3999 0.235665 CATATTAGCGTTGCCGGCAG 59.764 55.000 30.75 20.54 33.68 4.85
2057 4000 0.105964 ATATTAGCGTTGCCGGCAGA 59.894 50.000 30.75 17.88 33.68 4.26
2058 4001 0.108089 TATTAGCGTTGCCGGCAGAA 60.108 50.000 30.75 18.96 33.68 3.02
2059 4002 0.958382 ATTAGCGTTGCCGGCAGAAA 60.958 50.000 30.75 19.42 33.68 2.52
2060 4003 1.167155 TTAGCGTTGCCGGCAGAAAA 61.167 50.000 30.75 12.64 33.68 2.29
2061 4004 0.958382 TAGCGTTGCCGGCAGAAAAT 60.958 50.000 30.75 17.74 33.68 1.82
2062 4005 2.088178 GCGTTGCCGGCAGAAAATG 61.088 57.895 30.75 20.84 33.68 2.32
2063 4006 1.444212 CGTTGCCGGCAGAAAATGG 60.444 57.895 30.75 10.80 0.00 3.16
2064 4007 1.079888 GTTGCCGGCAGAAAATGGG 60.080 57.895 30.75 0.00 0.00 4.00
2065 4008 2.282039 TTGCCGGCAGAAAATGGGG 61.282 57.895 30.75 0.00 0.00 4.96
2066 4009 4.147449 GCCGGCAGAAAATGGGGC 62.147 66.667 24.80 0.00 0.00 5.80
2069 4012 3.939564 GGCAGAAAATGGGGCGAT 58.060 55.556 0.00 0.00 0.00 4.58
2070 4013 3.109847 GGCAGAAAATGGGGCGATA 57.890 52.632 0.00 0.00 0.00 2.92
2071 4014 1.620822 GGCAGAAAATGGGGCGATAT 58.379 50.000 0.00 0.00 0.00 1.63
2072 4015 1.270550 GGCAGAAAATGGGGCGATATG 59.729 52.381 0.00 0.00 0.00 1.78
2073 4016 2.229792 GCAGAAAATGGGGCGATATGA 58.770 47.619 0.00 0.00 0.00 2.15
2074 4017 2.227388 GCAGAAAATGGGGCGATATGAG 59.773 50.000 0.00 0.00 0.00 2.90
2075 4018 2.816087 CAGAAAATGGGGCGATATGAGG 59.184 50.000 0.00 0.00 0.00 3.86
2076 4019 2.443255 AGAAAATGGGGCGATATGAGGT 59.557 45.455 0.00 0.00 0.00 3.85
2077 4020 2.276732 AAATGGGGCGATATGAGGTG 57.723 50.000 0.00 0.00 0.00 4.00
2078 4021 0.401738 AATGGGGCGATATGAGGTGG 59.598 55.000 0.00 0.00 0.00 4.61
2079 4022 1.492133 ATGGGGCGATATGAGGTGGG 61.492 60.000 0.00 0.00 0.00 4.61
2080 4023 2.750350 GGGCGATATGAGGTGGGG 59.250 66.667 0.00 0.00 0.00 4.96
2081 4024 2.032681 GGCGATATGAGGTGGGGC 59.967 66.667 0.00 0.00 0.00 5.80
2082 4025 2.032681 GCGATATGAGGTGGGGCC 59.967 66.667 0.00 0.00 37.58 5.80
2083 4026 2.343758 CGATATGAGGTGGGGCCG 59.656 66.667 0.00 0.00 43.70 6.13
2084 4027 2.507854 CGATATGAGGTGGGGCCGT 61.508 63.158 0.00 0.00 43.70 5.68
2085 4028 1.837090 GATATGAGGTGGGGCCGTT 59.163 57.895 0.00 0.00 43.70 4.44
2086 4029 0.535102 GATATGAGGTGGGGCCGTTG 60.535 60.000 0.00 0.00 43.70 4.10
2087 4030 1.279025 ATATGAGGTGGGGCCGTTGT 61.279 55.000 0.00 0.00 43.70 3.32
2088 4031 0.618107 TATGAGGTGGGGCCGTTGTA 60.618 55.000 0.00 0.00 43.70 2.41
2089 4032 1.279025 ATGAGGTGGGGCCGTTGTAT 61.279 55.000 0.00 0.00 43.70 2.29
2090 4033 1.451387 GAGGTGGGGCCGTTGTATG 60.451 63.158 0.00 0.00 43.70 2.39
2091 4034 2.439519 GGTGGGGCCGTTGTATGG 60.440 66.667 0.00 0.00 0.00 2.74
2092 4035 2.439519 GTGGGGCCGTTGTATGGG 60.440 66.667 0.00 0.00 0.00 4.00
2093 4036 3.733972 TGGGGCCGTTGTATGGGG 61.734 66.667 0.00 0.00 0.00 4.96
2094 4037 3.735097 GGGGCCGTTGTATGGGGT 61.735 66.667 0.00 0.00 0.00 4.95
2095 4038 2.439519 GGGCCGTTGTATGGGGTG 60.440 66.667 0.00 0.00 0.00 4.61
2096 4039 3.138128 GGCCGTTGTATGGGGTGC 61.138 66.667 0.00 0.00 0.00 5.01
2097 4040 2.360600 GCCGTTGTATGGGGTGCA 60.361 61.111 0.00 0.00 0.00 4.57
2098 4041 2.406616 GCCGTTGTATGGGGTGCAG 61.407 63.158 0.00 0.00 0.00 4.41
2099 4042 1.748879 CCGTTGTATGGGGTGCAGG 60.749 63.158 0.00 0.00 0.00 4.85
2100 4043 1.002624 CGTTGTATGGGGTGCAGGT 60.003 57.895 0.00 0.00 0.00 4.00
2101 4044 0.250793 CGTTGTATGGGGTGCAGGTA 59.749 55.000 0.00 0.00 0.00 3.08
2102 4045 1.746470 GTTGTATGGGGTGCAGGTAC 58.254 55.000 0.00 0.00 0.00 3.34
2103 4046 0.250793 TTGTATGGGGTGCAGGTACG 59.749 55.000 0.00 0.00 0.00 3.67
2104 4047 1.145377 GTATGGGGTGCAGGTACGG 59.855 63.158 0.00 0.00 0.00 4.02
2105 4048 1.306312 TATGGGGTGCAGGTACGGT 60.306 57.895 0.00 0.00 0.00 4.83
2106 4049 0.032316 TATGGGGTGCAGGTACGGTA 60.032 55.000 0.00 0.00 0.00 4.02
2107 4050 1.335132 ATGGGGTGCAGGTACGGTAG 61.335 60.000 0.00 0.00 0.00 3.18
2108 4051 2.728435 GGGGTGCAGGTACGGTAGG 61.728 68.421 0.00 0.00 0.00 3.18
2109 4052 1.683365 GGGTGCAGGTACGGTAGGA 60.683 63.158 0.00 0.00 0.00 2.94
2110 4053 1.259840 GGGTGCAGGTACGGTAGGAA 61.260 60.000 0.00 0.00 0.00 3.36
2111 4054 0.828677 GGTGCAGGTACGGTAGGAAT 59.171 55.000 0.00 0.00 0.00 3.01
2112 4055 2.034124 GGTGCAGGTACGGTAGGAATA 58.966 52.381 0.00 0.00 0.00 1.75
2113 4056 2.223900 GGTGCAGGTACGGTAGGAATAC 60.224 54.545 0.00 0.00 0.00 1.89
2114 4057 1.677576 TGCAGGTACGGTAGGAATACG 59.322 52.381 0.00 0.00 0.00 3.06
2115 4058 1.601412 GCAGGTACGGTAGGAATACGC 60.601 57.143 0.00 0.00 0.00 4.42
2116 4059 0.947244 AGGTACGGTAGGAATACGCG 59.053 55.000 3.53 3.53 0.00 6.01
2117 4060 0.040067 GGTACGGTAGGAATACGCGG 60.040 60.000 12.47 0.00 0.00 6.46
2118 4061 0.663153 GTACGGTAGGAATACGCGGT 59.337 55.000 12.47 0.00 0.00 5.68
2119 4062 0.662619 TACGGTAGGAATACGCGGTG 59.337 55.000 12.47 0.00 0.00 4.94
2120 4063 1.299620 CGGTAGGAATACGCGGTGG 60.300 63.158 12.47 0.00 0.00 4.61
2121 4064 1.068585 GGTAGGAATACGCGGTGGG 59.931 63.158 12.47 0.00 0.00 4.61
2122 4065 1.068585 GTAGGAATACGCGGTGGGG 59.931 63.158 12.47 0.00 0.00 4.96
2123 4066 2.135581 TAGGAATACGCGGTGGGGG 61.136 63.158 12.47 0.00 0.00 5.40
2124 4067 2.877089 TAGGAATACGCGGTGGGGGT 62.877 60.000 12.47 0.00 44.91 4.95
2125 4068 2.512974 GAATACGCGGTGGGGGTG 60.513 66.667 12.47 0.00 42.49 4.61
2126 4069 4.104183 AATACGCGGTGGGGGTGG 62.104 66.667 12.47 0.00 42.49 4.61
2132 4075 4.692475 CGGTGGGGGTGGACGTTC 62.692 72.222 0.00 0.00 0.00 3.95
2133 4076 4.692475 GGTGGGGGTGGACGTTCG 62.692 72.222 0.00 0.00 0.00 3.95
2134 4077 4.692475 GTGGGGGTGGACGTTCGG 62.692 72.222 0.00 0.00 0.00 4.30
2165 4108 4.716003 ACGGAAGTGGGCTTAAGC 57.284 55.556 19.53 19.53 46.97 3.09
2166 4109 2.067197 ACGGAAGTGGGCTTAAGCT 58.933 52.632 25.88 6.64 46.97 3.74
2167 4110 0.321653 ACGGAAGTGGGCTTAAGCTG 60.322 55.000 25.88 4.51 46.97 4.24
2168 4111 0.321653 CGGAAGTGGGCTTAAGCTGT 60.322 55.000 25.88 7.86 41.70 4.40
2169 4112 1.454201 GGAAGTGGGCTTAAGCTGTC 58.546 55.000 25.88 16.02 41.70 3.51
2170 4113 1.454201 GAAGTGGGCTTAAGCTGTCC 58.546 55.000 25.88 18.88 41.70 4.02
2171 4114 0.321653 AAGTGGGCTTAAGCTGTCCG 60.322 55.000 25.88 0.00 41.70 4.79
2172 4115 1.003718 GTGGGCTTAAGCTGTCCGT 60.004 57.895 25.88 0.00 41.70 4.69
2173 4116 1.003839 TGGGCTTAAGCTGTCCGTG 60.004 57.895 25.88 0.00 41.70 4.94
2174 4117 1.003718 GGGCTTAAGCTGTCCGTGT 60.004 57.895 25.88 0.00 41.70 4.49
2175 4118 1.019805 GGGCTTAAGCTGTCCGTGTC 61.020 60.000 25.88 6.71 41.70 3.67
2176 4119 0.320421 GGCTTAAGCTGTCCGTGTCA 60.320 55.000 25.88 0.00 41.70 3.58
2177 4120 1.071605 GCTTAAGCTGTCCGTGTCAG 58.928 55.000 20.38 0.00 38.21 3.51
2178 4121 1.336887 GCTTAAGCTGTCCGTGTCAGA 60.337 52.381 20.38 0.00 38.21 3.27
2179 4122 2.866460 GCTTAAGCTGTCCGTGTCAGAA 60.866 50.000 20.38 0.00 38.21 3.02
2180 4123 2.433868 TAAGCTGTCCGTGTCAGAAC 57.566 50.000 0.00 0.00 35.20 3.01
2181 4124 0.464036 AAGCTGTCCGTGTCAGAACA 59.536 50.000 0.00 0.00 35.20 3.18
2182 4125 0.681733 AGCTGTCCGTGTCAGAACAT 59.318 50.000 0.00 0.00 37.81 2.71
2183 4126 0.792640 GCTGTCCGTGTCAGAACATG 59.207 55.000 0.00 0.00 41.30 3.21
2189 4132 2.680312 CGTGTCAGAACATGGATCCT 57.320 50.000 14.23 0.00 38.52 3.24
2190 4133 2.274437 CGTGTCAGAACATGGATCCTG 58.726 52.381 14.23 11.14 38.52 3.86
2191 4134 2.636830 GTGTCAGAACATGGATCCTGG 58.363 52.381 14.23 7.50 37.81 4.45
2192 4135 2.237143 GTGTCAGAACATGGATCCTGGA 59.763 50.000 14.23 0.00 37.81 3.86
2193 4136 2.237143 TGTCAGAACATGGATCCTGGAC 59.763 50.000 14.23 11.01 0.00 4.02
2194 4137 1.839994 TCAGAACATGGATCCTGGACC 59.160 52.381 14.23 3.35 0.00 4.46
2195 4138 1.561076 CAGAACATGGATCCTGGACCA 59.439 52.381 14.23 16.76 40.57 4.02
2196 4139 2.174210 CAGAACATGGATCCTGGACCAT 59.826 50.000 19.03 19.03 46.22 3.55
2199 4142 3.365069 ATGGATCCTGGACCATGGT 57.635 52.632 19.89 19.89 44.01 3.55
2200 4143 1.143813 ATGGATCCTGGACCATGGTC 58.856 55.000 33.14 33.14 44.01 4.02
2211 4154 2.379005 GACCATGGTCCAGATTTTCCC 58.621 52.381 31.37 4.82 39.08 3.97
2212 4155 1.340991 ACCATGGTCCAGATTTTCCCG 60.341 52.381 13.00 0.00 0.00 5.14
2213 4156 1.340991 CCATGGTCCAGATTTTCCCGT 60.341 52.381 2.57 0.00 0.00 5.28
2214 4157 2.446435 CATGGTCCAGATTTTCCCGTT 58.554 47.619 0.00 0.00 0.00 4.44
2215 4158 2.194201 TGGTCCAGATTTTCCCGTTC 57.806 50.000 0.00 0.00 0.00 3.95
2216 4159 1.422024 TGGTCCAGATTTTCCCGTTCA 59.578 47.619 0.00 0.00 0.00 3.18
2217 4160 2.158593 TGGTCCAGATTTTCCCGTTCAA 60.159 45.455 0.00 0.00 0.00 2.69
2218 4161 2.888414 GGTCCAGATTTTCCCGTTCAAA 59.112 45.455 0.00 0.00 0.00 2.69
2219 4162 3.057526 GGTCCAGATTTTCCCGTTCAAAG 60.058 47.826 0.00 0.00 0.00 2.77
2220 4163 2.556622 TCCAGATTTTCCCGTTCAAAGC 59.443 45.455 0.00 0.00 0.00 3.51
2221 4164 2.352715 CCAGATTTTCCCGTTCAAAGCC 60.353 50.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.742831 TCCTCGGTGCAACAATAATGC 59.257 47.619 0.98 0.00 44.08 3.56
20 21 1.003118 AGCTCCTCGGTGCAACAATAA 59.997 47.619 0.98 0.00 39.98 1.40
24 25 1.597854 CAAGCTCCTCGGTGCAACA 60.598 57.895 0.98 0.00 39.98 3.33
55 56 2.386661 ACGGTCTCATGTTTGCTAGG 57.613 50.000 0.00 0.00 0.00 3.02
56 57 2.159653 GCAACGGTCTCATGTTTGCTAG 60.160 50.000 0.00 0.00 0.00 3.42
66 67 0.534877 AATGTGCTGCAACGGTCTCA 60.535 50.000 2.77 0.00 0.00 3.27
67 68 0.110056 CAATGTGCTGCAACGGTCTC 60.110 55.000 2.77 0.00 0.00 3.36
68 69 0.534877 TCAATGTGCTGCAACGGTCT 60.535 50.000 2.77 0.00 0.00 3.85
71 72 0.241749 ACATCAATGTGCTGCAACGG 59.758 50.000 2.77 0.00 40.03 4.44
72 73 1.069091 TGACATCAATGTGCTGCAACG 60.069 47.619 2.77 0.00 41.95 4.10
73 74 2.710220 TGACATCAATGTGCTGCAAC 57.290 45.000 2.77 0.00 41.95 4.17
74 75 3.006003 ACAATGACATCAATGTGCTGCAA 59.994 39.130 2.77 0.00 41.95 4.08
75 76 2.559231 ACAATGACATCAATGTGCTGCA 59.441 40.909 0.00 0.00 41.95 4.41
76 77 2.921121 CACAATGACATCAATGTGCTGC 59.079 45.455 15.22 0.00 46.59 5.25
95 98 2.125106 GGCATGTCCGGGTCTCAC 60.125 66.667 0.00 0.00 0.00 3.51
102 105 1.068333 CACTTTCTTTGGCATGTCCGG 60.068 52.381 0.00 0.00 37.80 5.14
104 107 2.863704 GCACACTTTCTTTGGCATGTCC 60.864 50.000 0.00 0.00 0.00 4.02
106 109 1.069049 GGCACACTTTCTTTGGCATGT 59.931 47.619 0.00 0.00 35.91 3.21
116 119 2.027745 TCTCTGGATCTGGCACACTTTC 60.028 50.000 0.00 0.00 0.00 2.62
120 123 2.237393 GATCTCTGGATCTGGCACAC 57.763 55.000 0.00 0.00 43.55 3.82
128 131 2.093288 TGCACCACAAGATCTCTGGATC 60.093 50.000 21.17 13.75 46.33 3.36
134 137 3.406764 AGAAGTTGCACCACAAGATCTC 58.593 45.455 0.00 0.00 39.50 2.75
145 148 6.583806 CACCATGATTCTTAAAGAAGTTGCAC 59.416 38.462 0.00 0.00 37.69 4.57
164 167 2.428171 CCATGTTAAGAAGCCCACCATG 59.572 50.000 0.00 0.00 0.00 3.66
191 194 3.473625 TGCATGCACTAGAGATGGAATG 58.526 45.455 18.46 0.00 0.00 2.67
202 205 4.201940 CGGATTTCTTGATTGCATGCACTA 60.202 41.667 22.58 7.32 0.00 2.74
216 219 2.746472 GCCAGGTATGCTCGGATTTCTT 60.746 50.000 0.00 0.00 0.00 2.52
238 241 1.826385 ATTTCCGAAGCAAGAGGGTG 58.174 50.000 0.00 0.00 0.00 4.61
239 242 2.162681 CAATTTCCGAAGCAAGAGGGT 58.837 47.619 0.00 0.00 0.00 4.34
253 256 2.533266 CGAAAGGCTCATGGCAATTTC 58.467 47.619 16.97 16.97 44.01 2.17
274 277 5.047731 TGAGAGAACCAACTATCACAGACAG 60.048 44.000 0.00 0.00 33.99 3.51
281 284 6.719829 TCAGTACTTGAGAGAACCAACTATCA 59.280 38.462 0.00 0.00 36.54 2.15
305 308 1.975680 TGGTCTAGGTGTTTGGACCTC 59.024 52.381 11.44 0.00 43.33 3.85
320 323 3.097614 AGATTTGCTACTACGGTGGTCT 58.902 45.455 0.00 0.00 0.00 3.85
329 332 4.225042 ACACCATGGTCAGATTTGCTACTA 59.775 41.667 16.53 0.00 0.00 1.82
424 427 4.142534 ACCAAATCAATGTCTGAGATTGCG 60.143 41.667 19.47 9.67 37.52 4.85
430 433 4.503910 TCGGTACCAAATCAATGTCTGAG 58.496 43.478 13.54 0.00 37.52 3.35
431 434 4.545208 TCGGTACCAAATCAATGTCTGA 57.455 40.909 13.54 0.00 38.81 3.27
432 435 4.875536 TCATCGGTACCAAATCAATGTCTG 59.124 41.667 13.54 0.00 0.00 3.51
433 436 5.097742 TCATCGGTACCAAATCAATGTCT 57.902 39.130 13.54 0.00 0.00 3.41
434 437 5.811399 TTCATCGGTACCAAATCAATGTC 57.189 39.130 13.54 0.00 0.00 3.06
444 2268 3.057876 GCACACAATTTTCATCGGTACCA 60.058 43.478 13.54 0.00 0.00 3.25
450 2274 5.640218 AAAGTTGCACACAATTTTCATCG 57.360 34.783 0.00 0.00 40.49 3.84
479 2303 4.862018 GCAAGGTTGCGCATCTTATTTTTA 59.138 37.500 20.95 0.00 45.11 1.52
520 2345 7.431668 GCCACAAAGTTTACGTACAATTTTACA 59.568 33.333 4.54 0.00 0.00 2.41
526 2351 5.066764 AGTTGCCACAAAGTTTACGTACAAT 59.933 36.000 0.00 0.00 0.00 2.71
533 2358 4.820173 ACCTAGAGTTGCCACAAAGTTTAC 59.180 41.667 0.00 0.00 0.00 2.01
538 2363 3.882888 TGAAACCTAGAGTTGCCACAAAG 59.117 43.478 0.00 0.00 39.19 2.77
615 2446 2.416893 GCTAGCAAAACTGCTGGACTAC 59.583 50.000 10.63 0.00 44.67 2.73
695 2526 8.430801 AGCTTAAGCATGGATCGATAAATATC 57.569 34.615 28.39 0.00 45.16 1.63
724 2555 0.968901 AGGTCGATCGGGTTGCAGTA 60.969 55.000 16.41 0.00 0.00 2.74
817 2648 4.718961 TGCTAGAAGGCTCTTCAAAGTTT 58.281 39.130 14.76 0.00 32.70 2.66
823 2654 1.065854 GGCTTGCTAGAAGGCTCTTCA 60.066 52.381 4.58 3.60 39.44 3.02
831 2662 0.107459 GGTCAGGGGCTTGCTAGAAG 60.107 60.000 0.00 0.00 0.00 2.85
833 2664 0.338467 TAGGTCAGGGGCTTGCTAGA 59.662 55.000 0.00 0.00 0.00 2.43
837 2668 0.466124 CTAGTAGGTCAGGGGCTTGC 59.534 60.000 0.00 0.00 0.00 4.01
838 2669 1.757699 GACTAGTAGGTCAGGGGCTTG 59.242 57.143 0.00 0.00 36.35 4.01
839 2670 1.685491 CGACTAGTAGGTCAGGGGCTT 60.685 57.143 0.00 0.00 36.12 4.35
840 2671 0.106619 CGACTAGTAGGTCAGGGGCT 60.107 60.000 0.00 0.00 36.12 5.19
841 2672 0.106819 TCGACTAGTAGGTCAGGGGC 60.107 60.000 0.00 0.00 36.12 5.80
842 2673 2.660670 ATCGACTAGTAGGTCAGGGG 57.339 55.000 0.00 0.00 36.12 4.79
843 2674 4.885907 TGTAAATCGACTAGTAGGTCAGGG 59.114 45.833 0.00 0.00 36.12 4.45
844 2675 5.008811 CCTGTAAATCGACTAGTAGGTCAGG 59.991 48.000 7.71 7.71 36.12 3.86
845 2676 5.589452 ACCTGTAAATCGACTAGTAGGTCAG 59.411 44.000 4.22 1.26 36.12 3.51
846 2677 5.503927 ACCTGTAAATCGACTAGTAGGTCA 58.496 41.667 4.22 0.00 36.12 4.02
847 2678 6.448207 AACCTGTAAATCGACTAGTAGGTC 57.552 41.667 9.58 0.00 36.35 3.85
848 2679 7.341805 TCTAACCTGTAAATCGACTAGTAGGT 58.658 38.462 4.22 4.22 38.85 3.08
849 2680 7.798596 TCTAACCTGTAAATCGACTAGTAGG 57.201 40.000 0.00 0.00 0.00 3.18
850 2681 9.881529 GAATCTAACCTGTAAATCGACTAGTAG 57.118 37.037 0.00 0.00 0.00 2.57
902 2733 3.766151 TCCACGCGTAAGTAGAGAATTG 58.234 45.455 13.44 0.00 41.68 2.32
917 2748 0.748005 ATGCACCTACCAATCCACGC 60.748 55.000 0.00 0.00 0.00 5.34
921 2752 0.180406 ACGGATGCACCTACCAATCC 59.820 55.000 0.00 0.00 36.31 3.01
978 2814 4.905429 TCACCTGCAGCTGAGTTAATTTA 58.095 39.130 20.43 0.00 0.00 1.40
1008 2844 1.663739 CCACGACGACTTCCCTGAA 59.336 57.895 0.00 0.00 0.00 3.02
1230 3066 1.934220 GCTAGCAAAAGAACCGGCCC 61.934 60.000 10.63 0.00 0.00 5.80
1231 3067 0.960861 AGCTAGCAAAAGAACCGGCC 60.961 55.000 18.83 0.00 0.00 6.13
1232 3068 0.881796 AAGCTAGCAAAAGAACCGGC 59.118 50.000 18.83 0.00 0.00 6.13
1233 3069 3.643159 AAAAGCTAGCAAAAGAACCGG 57.357 42.857 18.83 0.00 0.00 5.28
1260 3096 5.752955 GGTAGAGAGCAGCTTATTCTGAAAG 59.247 44.000 12.78 0.00 36.19 2.62
1261 3097 5.395768 GGGTAGAGAGCAGCTTATTCTGAAA 60.396 44.000 12.78 0.00 36.19 2.69
1262 3098 4.100189 GGGTAGAGAGCAGCTTATTCTGAA 59.900 45.833 12.78 0.00 36.19 3.02
1263 3099 3.639094 GGGTAGAGAGCAGCTTATTCTGA 59.361 47.826 12.78 0.00 36.19 3.27
1264 3100 3.386078 TGGGTAGAGAGCAGCTTATTCTG 59.614 47.826 12.78 0.00 37.15 3.02
1265 3101 3.640967 CTGGGTAGAGAGCAGCTTATTCT 59.359 47.826 0.00 3.34 0.00 2.40
1266 3102 3.801983 GCTGGGTAGAGAGCAGCTTATTC 60.802 52.174 0.00 0.00 36.12 1.75
1267 3103 2.103941 GCTGGGTAGAGAGCAGCTTATT 59.896 50.000 0.00 0.00 36.12 1.40
1268 3104 1.691434 GCTGGGTAGAGAGCAGCTTAT 59.309 52.381 0.00 0.00 36.12 1.73
1269 3105 1.115467 GCTGGGTAGAGAGCAGCTTA 58.885 55.000 0.00 0.00 36.12 3.09
1270 3106 0.617249 AGCTGGGTAGAGAGCAGCTT 60.617 55.000 0.00 0.00 45.69 3.74
1271 3107 1.001503 AGCTGGGTAGAGAGCAGCT 59.998 57.895 0.00 0.00 43.48 4.24
1272 3108 1.115467 TAAGCTGGGTAGAGAGCAGC 58.885 55.000 0.00 0.00 37.70 5.25
1273 3109 4.586841 ACTAATAAGCTGGGTAGAGAGCAG 59.413 45.833 0.00 0.00 37.70 4.24
1274 3110 4.547671 ACTAATAAGCTGGGTAGAGAGCA 58.452 43.478 0.00 0.00 37.70 4.26
1275 3111 5.184287 CCTACTAATAAGCTGGGTAGAGAGC 59.816 48.000 11.03 0.00 33.77 4.09
1276 3112 5.184287 GCCTACTAATAAGCTGGGTAGAGAG 59.816 48.000 11.03 5.89 33.77 3.20
1277 3113 5.078256 GCCTACTAATAAGCTGGGTAGAGA 58.922 45.833 11.03 0.00 33.77 3.10
1278 3114 5.081032 AGCCTACTAATAAGCTGGGTAGAG 58.919 45.833 11.03 0.00 33.41 2.43
1279 3115 5.076057 AGCCTACTAATAAGCTGGGTAGA 57.924 43.478 11.03 0.00 33.41 2.59
1280 3116 5.810080 AAGCCTACTAATAAGCTGGGTAG 57.190 43.478 0.00 0.00 35.30 3.18
1281 3117 7.679732 TTAAAGCCTACTAATAAGCTGGGTA 57.320 36.000 0.00 0.00 35.30 3.69
1282 3118 6.570654 TTAAAGCCTACTAATAAGCTGGGT 57.429 37.500 0.00 0.00 35.30 4.51
1283 3119 7.875327 TTTTAAAGCCTACTAATAAGCTGGG 57.125 36.000 0.00 0.00 35.30 4.45
1308 3144 6.590234 ATTCTAGAAGCCGAACCAATTTTT 57.410 33.333 11.53 0.00 0.00 1.94
1309 3145 7.628580 GCTTATTCTAGAAGCCGAACCAATTTT 60.629 37.037 11.53 0.00 42.90 1.82
1310 3146 6.183360 GCTTATTCTAGAAGCCGAACCAATTT 60.183 38.462 11.53 0.00 42.90 1.82
1311 3147 5.297029 GCTTATTCTAGAAGCCGAACCAATT 59.703 40.000 11.53 0.00 42.90 2.32
1312 3148 4.816925 GCTTATTCTAGAAGCCGAACCAAT 59.183 41.667 11.53 0.00 42.90 3.16
1313 3149 4.189231 GCTTATTCTAGAAGCCGAACCAA 58.811 43.478 11.53 0.00 42.90 3.67
1314 3150 3.793559 GCTTATTCTAGAAGCCGAACCA 58.206 45.455 11.53 0.00 42.90 3.67
1338 3174 6.973460 TCTAGAATAAACTGGGTAGCTACC 57.027 41.667 31.50 31.50 45.71 3.18
1339 3175 6.924612 GCTTCTAGAATAAACTGGGTAGCTAC 59.075 42.308 15.88 15.88 0.00 3.58
1340 3176 6.041751 GGCTTCTAGAATAAACTGGGTAGCTA 59.958 42.308 5.44 0.00 32.28 3.32
1341 3177 5.163290 GGCTTCTAGAATAAACTGGGTAGCT 60.163 44.000 5.44 0.00 32.28 3.32
1342 3178 5.057819 GGCTTCTAGAATAAACTGGGTAGC 58.942 45.833 5.44 0.81 0.00 3.58
1343 3179 6.049790 GTGGCTTCTAGAATAAACTGGGTAG 58.950 44.000 5.44 0.00 0.00 3.18
1344 3180 5.104652 GGTGGCTTCTAGAATAAACTGGGTA 60.105 44.000 5.44 0.00 0.00 3.69
1345 3181 4.324331 GGTGGCTTCTAGAATAAACTGGGT 60.324 45.833 5.44 0.00 0.00 4.51
1346 3182 4.200092 GGTGGCTTCTAGAATAAACTGGG 58.800 47.826 5.44 0.00 0.00 4.45
1347 3183 4.843728 TGGTGGCTTCTAGAATAAACTGG 58.156 43.478 5.44 0.00 0.00 4.00
1348 3184 6.817765 TTTGGTGGCTTCTAGAATAAACTG 57.182 37.500 5.44 0.00 0.00 3.16
1349 3185 7.231467 TCTTTTGGTGGCTTCTAGAATAAACT 58.769 34.615 5.44 0.00 0.00 2.66
1350 3186 7.448748 TCTTTTGGTGGCTTCTAGAATAAAC 57.551 36.000 5.44 4.53 0.00 2.01
1351 3187 7.724061 AGTTCTTTTGGTGGCTTCTAGAATAAA 59.276 33.333 5.44 0.00 0.00 1.40
1352 3188 7.174946 CAGTTCTTTTGGTGGCTTCTAGAATAA 59.825 37.037 5.44 0.00 0.00 1.40
1353 3189 6.655003 CAGTTCTTTTGGTGGCTTCTAGAATA 59.345 38.462 5.44 0.00 0.00 1.75
1354 3190 5.474876 CAGTTCTTTTGGTGGCTTCTAGAAT 59.525 40.000 5.44 0.00 0.00 2.40
1355 3191 4.821805 CAGTTCTTTTGGTGGCTTCTAGAA 59.178 41.667 4.81 4.81 0.00 2.10
1356 3192 4.389374 CAGTTCTTTTGGTGGCTTCTAGA 58.611 43.478 0.00 0.00 0.00 2.43
1357 3193 3.503748 CCAGTTCTTTTGGTGGCTTCTAG 59.496 47.826 0.00 0.00 0.00 2.43
1358 3194 3.486383 CCAGTTCTTTTGGTGGCTTCTA 58.514 45.455 0.00 0.00 0.00 2.10
1359 3195 2.310538 CCAGTTCTTTTGGTGGCTTCT 58.689 47.619 0.00 0.00 0.00 2.85
1360 3196 2.800881 CCAGTTCTTTTGGTGGCTTC 57.199 50.000 0.00 0.00 0.00 3.86
1364 3200 0.469892 AGGGCCAGTTCTTTTGGTGG 60.470 55.000 6.18 0.00 38.02 4.61
1365 3201 2.286365 TAGGGCCAGTTCTTTTGGTG 57.714 50.000 6.18 0.00 38.02 4.17
1366 3202 2.177016 AGTTAGGGCCAGTTCTTTTGGT 59.823 45.455 6.18 0.00 38.02 3.67
1367 3203 2.876581 AGTTAGGGCCAGTTCTTTTGG 58.123 47.619 6.18 0.00 38.78 3.28
1368 3204 3.005791 CCAAGTTAGGGCCAGTTCTTTTG 59.994 47.826 6.18 0.00 0.00 2.44
1369 3205 3.230976 CCAAGTTAGGGCCAGTTCTTTT 58.769 45.455 6.18 0.00 0.00 2.27
1370 3206 2.876581 CCAAGTTAGGGCCAGTTCTTT 58.123 47.619 6.18 0.00 0.00 2.52
1371 3207 1.547901 GCCAAGTTAGGGCCAGTTCTT 60.548 52.381 6.18 1.71 45.87 2.52
1372 3208 0.038310 GCCAAGTTAGGGCCAGTTCT 59.962 55.000 6.18 0.00 45.87 3.01
1373 3209 2.568003 GCCAAGTTAGGGCCAGTTC 58.432 57.895 6.18 0.00 45.87 3.01
1374 3210 4.843624 GCCAAGTTAGGGCCAGTT 57.156 55.556 6.18 0.00 45.87 3.16
1380 3216 1.003839 TCTGCACGCCAAGTTAGGG 60.004 57.895 0.00 0.00 0.00 3.53
1381 3217 0.602638 TGTCTGCACGCCAAGTTAGG 60.603 55.000 0.00 0.00 0.00 2.69
1382 3218 1.442769 ATGTCTGCACGCCAAGTTAG 58.557 50.000 0.00 0.00 0.00 2.34
1383 3219 2.753055 TATGTCTGCACGCCAAGTTA 57.247 45.000 0.00 0.00 0.00 2.24
1384 3220 1.890876 TTATGTCTGCACGCCAAGTT 58.109 45.000 0.00 0.00 0.00 2.66
1385 3221 1.739466 CATTATGTCTGCACGCCAAGT 59.261 47.619 0.00 0.00 0.00 3.16
1386 3222 2.009051 TCATTATGTCTGCACGCCAAG 58.991 47.619 0.00 0.00 0.00 3.61
1387 3223 2.106477 TCATTATGTCTGCACGCCAA 57.894 45.000 0.00 0.00 0.00 4.52
1388 3224 2.009051 CTTCATTATGTCTGCACGCCA 58.991 47.619 0.00 0.00 0.00 5.69
1389 3225 1.268234 GCTTCATTATGTCTGCACGCC 60.268 52.381 0.00 0.00 0.00 5.68
1390 3226 1.667724 AGCTTCATTATGTCTGCACGC 59.332 47.619 8.67 0.00 0.00 5.34
1391 3227 3.371898 TGAAGCTTCATTATGTCTGCACG 59.628 43.478 25.16 0.00 31.01 5.34
1475 3319 0.865769 CAACTAGGCGTTGCGAACTT 59.134 50.000 0.00 0.00 45.70 2.66
1476 3320 2.528797 CAACTAGGCGTTGCGAACT 58.471 52.632 0.00 0.00 45.70 3.01
1605 3526 8.348507 GGGAAAGACATGCTTTTATCTTCATAG 58.651 37.037 13.82 0.00 46.52 2.23
1657 3579 1.900486 AGACAAGCCACTACCCACTAC 59.100 52.381 0.00 0.00 0.00 2.73
1658 3580 2.320681 AGACAAGCCACTACCCACTA 57.679 50.000 0.00 0.00 0.00 2.74
1659 3581 1.900486 GTAGACAAGCCACTACCCACT 59.100 52.381 0.00 0.00 34.66 4.00
1660 3582 1.621814 TGTAGACAAGCCACTACCCAC 59.378 52.381 0.00 0.00 38.40 4.61
1661 3583 1.621814 GTGTAGACAAGCCACTACCCA 59.378 52.381 0.00 0.00 38.40 4.51
1662 3584 1.621814 TGTGTAGACAAGCCACTACCC 59.378 52.381 0.00 0.00 38.40 3.69
1663 3585 2.931320 GCTGTGTAGACAAGCCACTACC 60.931 54.545 0.00 0.00 38.40 3.18
1684 3606 5.890334 TCACAAAGCCACTTAAGTTCAAAG 58.110 37.500 5.07 0.00 0.00 2.77
1770 3712 4.451900 CTGGGTCAGTCAAGTTGTAGTTT 58.548 43.478 2.11 0.00 0.00 2.66
1795 3737 9.400638 CGACTACAGAGGATTATGAAGATAAAC 57.599 37.037 0.00 0.00 0.00 2.01
1822 3764 3.980134 CACATTAAACATGCGCAGTCAAA 59.020 39.130 18.32 11.73 0.00 2.69
1829 3771 5.003778 GTCTTGATTCACATTAAACATGCGC 59.996 40.000 0.00 0.00 0.00 6.09
1855 3797 5.978814 ACTATACTCTAGGCAAGGTTTGTG 58.021 41.667 0.00 0.00 0.00 3.33
1953 3896 0.039074 AGTACGAGCCATATCGCTGC 60.039 55.000 0.00 0.00 46.60 5.25
1954 3897 2.484651 AGTAGTACGAGCCATATCGCTG 59.515 50.000 0.00 0.00 46.60 5.18
1955 3898 2.780714 AGTAGTACGAGCCATATCGCT 58.219 47.619 0.00 0.00 46.60 4.93
1956 3899 4.879104 ATAGTAGTACGAGCCATATCGC 57.121 45.455 0.00 0.00 46.60 4.58
1957 3900 8.815141 ACTATATAGTAGTACGAGCCATATCG 57.185 38.462 13.88 0.00 40.65 2.92
1958 3901 9.206870 GGACTATATAGTAGTACGAGCCATATC 57.793 40.741 15.42 0.00 36.50 1.63
1959 3902 8.156165 GGGACTATATAGTAGTACGAGCCATAT 58.844 40.741 15.42 0.00 36.50 1.78
1960 3903 7.126268 TGGGACTATATAGTAGTACGAGCCATA 59.874 40.741 15.42 1.40 36.50 2.74
1961 3904 6.069789 TGGGACTATATAGTAGTACGAGCCAT 60.070 42.308 15.42 0.00 36.50 4.40
1962 3905 5.249163 TGGGACTATATAGTAGTACGAGCCA 59.751 44.000 15.42 4.09 36.50 4.75
1963 3906 5.738909 TGGGACTATATAGTAGTACGAGCC 58.261 45.833 15.42 9.44 36.50 4.70
1964 3907 7.862512 AATGGGACTATATAGTAGTACGAGC 57.137 40.000 15.42 0.84 36.50 5.03
1976 3919 8.651389 CCAACGGATATGATAATGGGACTATAT 58.349 37.037 0.00 0.00 0.00 0.86
1977 3920 7.622081 ACCAACGGATATGATAATGGGACTATA 59.378 37.037 0.00 0.00 0.00 1.31
1978 3921 6.443849 ACCAACGGATATGATAATGGGACTAT 59.556 38.462 0.00 0.00 0.00 2.12
1979 3922 5.783360 ACCAACGGATATGATAATGGGACTA 59.217 40.000 0.00 0.00 0.00 2.59
1980 3923 4.597507 ACCAACGGATATGATAATGGGACT 59.402 41.667 0.00 0.00 0.00 3.85
1981 3924 4.906618 ACCAACGGATATGATAATGGGAC 58.093 43.478 0.00 0.00 0.00 4.46
1982 3925 4.322424 CGACCAACGGATATGATAATGGGA 60.322 45.833 0.00 0.00 38.46 4.37
1983 3926 3.932710 CGACCAACGGATATGATAATGGG 59.067 47.826 0.00 0.00 38.46 4.00
1997 3940 3.554692 GATCTGCGCCGACCAACG 61.555 66.667 4.18 0.00 42.18 4.10
1998 3941 2.434185 TGATCTGCGCCGACCAAC 60.434 61.111 4.18 0.00 0.00 3.77
1999 3942 2.125552 CTGATCTGCGCCGACCAA 60.126 61.111 4.18 0.00 0.00 3.67
2000 3943 4.819761 GCTGATCTGCGCCGACCA 62.820 66.667 4.18 0.00 0.00 4.02
2008 3951 1.882167 GTCTGGCTCGCTGATCTGC 60.882 63.158 14.16 14.16 0.00 4.26
2009 3952 1.588403 CGTCTGGCTCGCTGATCTG 60.588 63.158 0.00 0.00 0.00 2.90
2010 3953 2.804167 CGTCTGGCTCGCTGATCT 59.196 61.111 0.00 0.00 0.00 2.75
2017 3960 0.027194 CATTCAATGCGTCTGGCTCG 59.973 55.000 0.00 0.00 44.05 5.03
2018 3961 3.911989 CATTCAATGCGTCTGGCTC 57.088 52.632 0.00 0.00 44.05 4.70
2028 3971 4.383649 GGCAACGCTAATATGCATTCAATG 59.616 41.667 3.54 0.00 41.80 2.82
2029 3972 4.549458 GGCAACGCTAATATGCATTCAAT 58.451 39.130 3.54 0.00 41.80 2.57
2030 3973 3.963665 GGCAACGCTAATATGCATTCAA 58.036 40.909 3.54 0.00 41.80 2.69
2031 3974 3.624326 GGCAACGCTAATATGCATTCA 57.376 42.857 3.54 0.00 41.80 2.57
2046 3989 1.079888 CCCATTTTCTGCCGGCAAC 60.080 57.895 32.09 0.00 0.00 4.17
2047 3990 2.282039 CCCCATTTTCTGCCGGCAA 61.282 57.895 32.09 16.80 0.00 4.52
2048 3991 2.679642 CCCCATTTTCTGCCGGCA 60.680 61.111 30.59 30.59 0.00 5.69
2049 3992 4.147449 GCCCCATTTTCTGCCGGC 62.147 66.667 22.73 22.73 33.28 6.13
2050 3993 3.825611 CGCCCCATTTTCTGCCGG 61.826 66.667 0.00 0.00 0.00 6.13
2051 3994 0.817634 TATCGCCCCATTTTCTGCCG 60.818 55.000 0.00 0.00 0.00 5.69
2052 3995 1.270550 CATATCGCCCCATTTTCTGCC 59.729 52.381 0.00 0.00 0.00 4.85
2053 3996 2.227388 CTCATATCGCCCCATTTTCTGC 59.773 50.000 0.00 0.00 0.00 4.26
2054 3997 2.816087 CCTCATATCGCCCCATTTTCTG 59.184 50.000 0.00 0.00 0.00 3.02
2055 3998 2.443255 ACCTCATATCGCCCCATTTTCT 59.557 45.455 0.00 0.00 0.00 2.52
2056 3999 2.554032 CACCTCATATCGCCCCATTTTC 59.446 50.000 0.00 0.00 0.00 2.29
2057 4000 2.586425 CACCTCATATCGCCCCATTTT 58.414 47.619 0.00 0.00 0.00 1.82
2058 4001 1.202927 CCACCTCATATCGCCCCATTT 60.203 52.381 0.00 0.00 0.00 2.32
2059 4002 0.401738 CCACCTCATATCGCCCCATT 59.598 55.000 0.00 0.00 0.00 3.16
2060 4003 1.492133 CCCACCTCATATCGCCCCAT 61.492 60.000 0.00 0.00 0.00 4.00
2061 4004 2.146724 CCCACCTCATATCGCCCCA 61.147 63.158 0.00 0.00 0.00 4.96
2062 4005 2.750350 CCCACCTCATATCGCCCC 59.250 66.667 0.00 0.00 0.00 5.80
2063 4006 2.750350 CCCCACCTCATATCGCCC 59.250 66.667 0.00 0.00 0.00 6.13
2064 4007 2.032681 GCCCCACCTCATATCGCC 59.967 66.667 0.00 0.00 0.00 5.54
2065 4008 2.032681 GGCCCCACCTCATATCGC 59.967 66.667 0.00 0.00 34.51 4.58
2066 4009 2.040009 AACGGCCCCACCTCATATCG 62.040 60.000 0.00 0.00 35.61 2.92
2067 4010 0.535102 CAACGGCCCCACCTCATATC 60.535 60.000 0.00 0.00 35.61 1.63
2068 4011 1.279025 ACAACGGCCCCACCTCATAT 61.279 55.000 0.00 0.00 35.61 1.78
2069 4012 0.618107 TACAACGGCCCCACCTCATA 60.618 55.000 0.00 0.00 35.61 2.15
2070 4013 1.279025 ATACAACGGCCCCACCTCAT 61.279 55.000 0.00 0.00 35.61 2.90
2071 4014 1.921346 ATACAACGGCCCCACCTCA 60.921 57.895 0.00 0.00 35.61 3.86
2072 4015 1.451387 CATACAACGGCCCCACCTC 60.451 63.158 0.00 0.00 35.61 3.85
2073 4016 2.674754 CATACAACGGCCCCACCT 59.325 61.111 0.00 0.00 35.61 4.00
2074 4017 2.439519 CCATACAACGGCCCCACC 60.440 66.667 0.00 0.00 0.00 4.61
2075 4018 2.439519 CCCATACAACGGCCCCAC 60.440 66.667 0.00 0.00 0.00 4.61
2076 4019 3.733972 CCCCATACAACGGCCCCA 61.734 66.667 0.00 0.00 0.00 4.96
2077 4020 3.735097 ACCCCATACAACGGCCCC 61.735 66.667 0.00 0.00 0.00 5.80
2078 4021 2.439519 CACCCCATACAACGGCCC 60.440 66.667 0.00 0.00 0.00 5.80
2079 4022 3.138128 GCACCCCATACAACGGCC 61.138 66.667 0.00 0.00 0.00 6.13
2080 4023 2.360600 TGCACCCCATACAACGGC 60.361 61.111 0.00 0.00 0.00 5.68
2081 4024 1.748879 CCTGCACCCCATACAACGG 60.749 63.158 0.00 0.00 0.00 4.44
2082 4025 0.250793 TACCTGCACCCCATACAACG 59.749 55.000 0.00 0.00 0.00 4.10
2083 4026 1.746470 GTACCTGCACCCCATACAAC 58.254 55.000 0.00 0.00 0.00 3.32
2084 4027 0.250793 CGTACCTGCACCCCATACAA 59.749 55.000 0.00 0.00 0.00 2.41
2085 4028 1.618876 CCGTACCTGCACCCCATACA 61.619 60.000 0.00 0.00 0.00 2.29
2086 4029 1.145377 CCGTACCTGCACCCCATAC 59.855 63.158 0.00 0.00 0.00 2.39
2087 4030 0.032316 TACCGTACCTGCACCCCATA 60.032 55.000 0.00 0.00 0.00 2.74
2088 4031 1.306312 TACCGTACCTGCACCCCAT 60.306 57.895 0.00 0.00 0.00 4.00
2089 4032 1.985662 CTACCGTACCTGCACCCCA 60.986 63.158 0.00 0.00 0.00 4.96
2090 4033 2.728435 CCTACCGTACCTGCACCCC 61.728 68.421 0.00 0.00 0.00 4.95
2091 4034 1.259840 TTCCTACCGTACCTGCACCC 61.260 60.000 0.00 0.00 0.00 4.61
2092 4035 0.828677 ATTCCTACCGTACCTGCACC 59.171 55.000 0.00 0.00 0.00 5.01
2093 4036 2.542411 CGTATTCCTACCGTACCTGCAC 60.542 54.545 0.00 0.00 0.00 4.57
2094 4037 1.677576 CGTATTCCTACCGTACCTGCA 59.322 52.381 0.00 0.00 0.00 4.41
2095 4038 1.601412 GCGTATTCCTACCGTACCTGC 60.601 57.143 0.00 0.00 0.00 4.85
2096 4039 1.334419 CGCGTATTCCTACCGTACCTG 60.334 57.143 0.00 0.00 0.00 4.00
2097 4040 0.947244 CGCGTATTCCTACCGTACCT 59.053 55.000 0.00 0.00 0.00 3.08
2098 4041 0.040067 CCGCGTATTCCTACCGTACC 60.040 60.000 4.92 0.00 0.00 3.34
2099 4042 0.663153 ACCGCGTATTCCTACCGTAC 59.337 55.000 4.92 0.00 0.00 3.67
2100 4043 0.662619 CACCGCGTATTCCTACCGTA 59.337 55.000 4.92 0.00 0.00 4.02
2101 4044 1.434696 CACCGCGTATTCCTACCGT 59.565 57.895 4.92 0.00 0.00 4.83
2102 4045 1.299620 CCACCGCGTATTCCTACCG 60.300 63.158 4.92 0.00 0.00 4.02
2103 4046 1.068585 CCCACCGCGTATTCCTACC 59.931 63.158 4.92 0.00 0.00 3.18
2104 4047 1.068585 CCCCACCGCGTATTCCTAC 59.931 63.158 4.92 0.00 0.00 3.18
2105 4048 2.135581 CCCCCACCGCGTATTCCTA 61.136 63.158 4.92 0.00 0.00 2.94
2106 4049 3.476419 CCCCCACCGCGTATTCCT 61.476 66.667 4.92 0.00 0.00 3.36
2107 4050 3.789290 ACCCCCACCGCGTATTCC 61.789 66.667 4.92 0.00 0.00 3.01
2108 4051 2.512974 CACCCCCACCGCGTATTC 60.513 66.667 4.92 0.00 0.00 1.75
2109 4052 4.104183 CCACCCCCACCGCGTATT 62.104 66.667 4.92 0.00 0.00 1.89
2115 4058 4.692475 GAACGTCCACCCCCACCG 62.692 72.222 0.00 0.00 0.00 4.94
2116 4059 4.692475 CGAACGTCCACCCCCACC 62.692 72.222 0.00 0.00 0.00 4.61
2117 4060 4.692475 CCGAACGTCCACCCCCAC 62.692 72.222 0.00 0.00 0.00 4.61
2137 4080 4.821589 CTTCCGTCAGCTCCCGCC 62.822 72.222 0.00 0.00 36.60 6.13
2138 4081 4.070552 ACTTCCGTCAGCTCCCGC 62.071 66.667 0.00 0.00 0.00 6.13
2139 4082 2.125912 CACTTCCGTCAGCTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
2140 4083 2.266055 CCACTTCCGTCAGCTCCC 59.734 66.667 0.00 0.00 0.00 4.30
2141 4084 2.266055 CCCACTTCCGTCAGCTCC 59.734 66.667 0.00 0.00 0.00 4.70
2142 4085 2.435059 GCCCACTTCCGTCAGCTC 60.435 66.667 0.00 0.00 0.00 4.09
2143 4086 1.192146 TAAGCCCACTTCCGTCAGCT 61.192 55.000 0.00 0.00 37.33 4.24
2144 4087 0.321298 TTAAGCCCACTTCCGTCAGC 60.321 55.000 0.00 0.00 37.33 4.26
2145 4088 1.726853 CTTAAGCCCACTTCCGTCAG 58.273 55.000 0.00 0.00 37.33 3.51
2146 4089 0.321298 GCTTAAGCCCACTTCCGTCA 60.321 55.000 17.00 0.00 37.33 4.35
2147 4090 0.036294 AGCTTAAGCCCACTTCCGTC 60.036 55.000 23.71 0.00 43.38 4.79
2148 4091 0.321653 CAGCTTAAGCCCACTTCCGT 60.322 55.000 23.71 0.00 43.38 4.69
2149 4092 0.321653 ACAGCTTAAGCCCACTTCCG 60.322 55.000 23.71 5.23 43.38 4.30
2150 4093 1.454201 GACAGCTTAAGCCCACTTCC 58.546 55.000 23.71 3.19 43.38 3.46
2151 4094 1.454201 GGACAGCTTAAGCCCACTTC 58.546 55.000 23.71 12.27 43.38 3.01
2152 4095 0.321653 CGGACAGCTTAAGCCCACTT 60.322 55.000 23.71 1.71 43.38 3.16
2153 4096 1.296715 CGGACAGCTTAAGCCCACT 59.703 57.895 23.71 2.13 43.38 4.00
2154 4097 1.003718 ACGGACAGCTTAAGCCCAC 60.004 57.895 23.71 14.11 43.38 4.61
2155 4098 1.003839 CACGGACAGCTTAAGCCCA 60.004 57.895 23.71 0.00 43.38 5.36
2156 4099 1.003718 ACACGGACAGCTTAAGCCC 60.004 57.895 23.71 16.37 43.38 5.19
2157 4100 0.320421 TGACACGGACAGCTTAAGCC 60.320 55.000 23.71 8.69 43.38 4.35
2158 4101 1.071605 CTGACACGGACAGCTTAAGC 58.928 55.000 20.09 20.09 42.49 3.09
2159 4102 2.724977 TCTGACACGGACAGCTTAAG 57.275 50.000 0.00 0.00 35.61 1.85
2160 4103 2.101750 TGTTCTGACACGGACAGCTTAA 59.898 45.455 0.00 0.00 35.61 1.85
2161 4104 1.684450 TGTTCTGACACGGACAGCTTA 59.316 47.619 0.00 0.00 35.61 3.09
2162 4105 0.464036 TGTTCTGACACGGACAGCTT 59.536 50.000 0.00 0.00 35.61 3.74
2163 4106 0.681733 ATGTTCTGACACGGACAGCT 59.318 50.000 0.00 0.00 38.91 4.24
2164 4107 0.792640 CATGTTCTGACACGGACAGC 59.207 55.000 0.00 0.00 38.91 4.40
2165 4108 1.000843 TCCATGTTCTGACACGGACAG 59.999 52.381 0.00 0.00 42.79 3.51
2166 4109 1.044611 TCCATGTTCTGACACGGACA 58.955 50.000 0.00 0.00 42.79 4.02
2167 4110 3.906660 TCCATGTTCTGACACGGAC 57.093 52.632 0.00 0.00 42.79 4.79
2169 4112 1.208052 AGGATCCATGTTCTGACACGG 59.792 52.381 15.82 0.00 40.45 4.94
2170 4113 2.274437 CAGGATCCATGTTCTGACACG 58.726 52.381 15.82 0.00 38.91 4.49
2171 4114 2.237143 TCCAGGATCCATGTTCTGACAC 59.763 50.000 15.82 0.00 38.91 3.67
2172 4115 2.237143 GTCCAGGATCCATGTTCTGACA 59.763 50.000 15.82 0.00 40.71 3.58
2173 4116 2.420687 GGTCCAGGATCCATGTTCTGAC 60.421 54.545 15.82 10.94 0.00 3.51
2174 4117 1.839994 GGTCCAGGATCCATGTTCTGA 59.160 52.381 15.82 0.00 0.00 3.27
2175 4118 1.561076 TGGTCCAGGATCCATGTTCTG 59.439 52.381 15.82 1.58 0.00 3.02
2176 4119 1.971149 TGGTCCAGGATCCATGTTCT 58.029 50.000 15.82 0.00 0.00 3.01
2181 4124 1.143813 GACCATGGTCCAGGATCCAT 58.856 55.000 31.37 14.67 44.15 3.41
2182 4125 2.620234 GACCATGGTCCAGGATCCA 58.380 57.895 31.37 11.83 39.08 3.41
2191 4134 2.379005 GGGAAAATCTGGACCATGGTC 58.621 52.381 33.14 33.14 43.87 4.02
2192 4135 1.340991 CGGGAAAATCTGGACCATGGT 60.341 52.381 19.89 19.89 0.00 3.55
2193 4136 1.340991 ACGGGAAAATCTGGACCATGG 60.341 52.381 11.19 11.19 0.00 3.66
2194 4137 2.128771 ACGGGAAAATCTGGACCATG 57.871 50.000 0.00 0.00 0.00 3.66
2195 4138 2.041081 TGAACGGGAAAATCTGGACCAT 59.959 45.455 0.00 0.00 0.00 3.55
2196 4139 1.422024 TGAACGGGAAAATCTGGACCA 59.578 47.619 0.00 0.00 0.00 4.02
2197 4140 2.194201 TGAACGGGAAAATCTGGACC 57.806 50.000 0.00 0.00 0.00 4.46
2198 4141 3.611766 GCTTTGAACGGGAAAATCTGGAC 60.612 47.826 0.00 0.00 0.00 4.02
2199 4142 2.556622 GCTTTGAACGGGAAAATCTGGA 59.443 45.455 0.00 0.00 0.00 3.86
2200 4143 2.352715 GGCTTTGAACGGGAAAATCTGG 60.353 50.000 0.00 0.00 0.00 3.86
2201 4144 2.946564 GGCTTTGAACGGGAAAATCTG 58.053 47.619 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.