Multiple sequence alignment - TraesCS6D01G073100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G073100 chr6D 100.000 2201 0 0 1 2201 37442149 37444349 0.000000e+00 4065.0
1 TraesCS6D01G073100 chr6B 91.195 1397 90 16 1 1373 87540213 87541600 0.000000e+00 1868.0
2 TraesCS6D01G073100 chr6B 82.547 424 54 15 1793 2199 672679639 672679219 2.690000e-94 355.0
3 TraesCS6D01G073100 chr6B 86.341 205 25 2 999 1203 66741874 66741673 1.020000e-53 220.0
4 TraesCS6D01G073100 chr6A 88.402 1164 76 26 623 1748 48764191 48765333 0.000000e+00 1347.0
5 TraesCS6D01G073100 chr6A 89.966 877 62 15 571 1429 48712961 48713829 0.000000e+00 1109.0
6 TraesCS6D01G073100 chr6A 92.185 627 43 4 2 625 48763465 48764088 0.000000e+00 881.0
7 TraesCS6D01G073100 chr6A 85.241 332 32 10 3 319 48708533 48708862 2.110000e-85 326.0
8 TraesCS6D01G073100 chr6A 86.341 205 25 2 999 1203 35929297 35929096 1.020000e-53 220.0
9 TraesCS6D01G073100 chr6A 94.792 96 5 0 497 592 48708960 48709055 1.360000e-32 150.0
10 TraesCS6D01G073100 chr1B 82.075 424 52 17 1793 2200 231644302 231644717 7.530000e-90 340.0
11 TraesCS6D01G073100 chr1B 81.235 421 60 14 1795 2200 17330013 17329597 2.730000e-84 322.0
12 TraesCS6D01G073100 chr1B 89.041 73 7 1 215 286 652580136 652580064 3.010000e-14 89.8
13 TraesCS6D01G073100 chr4D 82.000 400 60 11 1793 2181 502549589 502549191 1.630000e-86 329.0
14 TraesCS6D01G073100 chr4D 81.146 419 62 14 1793 2198 268124650 268124236 9.800000e-84 320.0
15 TraesCS6D01G073100 chr7B 82.368 397 51 15 1793 2174 651278615 651279007 5.860000e-86 327.0
16 TraesCS6D01G073100 chr2D 82.090 402 50 17 1793 2178 647764699 647765094 7.580000e-85 324.0
17 TraesCS6D01G073100 chrUn 81.235 421 60 14 1795 2200 2483091 2483507 2.730000e-84 322.0
18 TraesCS6D01G073100 chrUn 81.235 421 60 14 1795 2200 336669289 336668873 2.730000e-84 322.0
19 TraesCS6D01G073100 chrUn 86.829 205 24 2 999 1203 100705662 100705863 2.200000e-55 226.0
20 TraesCS6D01G073100 chrUn 85.854 205 26 2 999 1203 100575560 100575761 4.760000e-52 215.0
21 TraesCS6D01G073100 chr3A 87.059 85 9 2 1 85 520448084 520448166 6.470000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G073100 chr6D 37442149 37444349 2200 False 4065.000000 4065 100.000000 1 2201 1 chr6D.!!$F1 2200
1 TraesCS6D01G073100 chr6B 87540213 87541600 1387 False 1868.000000 1868 91.195000 1 1373 1 chr6B.!!$F1 1372
2 TraesCS6D01G073100 chr6A 48763465 48765333 1868 False 1114.000000 1347 90.293500 2 1748 2 chr6A.!!$F2 1746
3 TraesCS6D01G073100 chr6A 48708533 48713829 5296 False 528.333333 1109 89.999667 3 1429 3 chr6A.!!$F1 1426

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 5028 0.905809 TACCCTGCCTCCGCTTACAA 60.906 55.0 0.0 0.0 35.36 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 6359 0.039527 GGGCGACGCAAACAAATCTT 60.04 50.0 23.09 0.0 0.0 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.972198 GGGTTGCTTAGCCCCAAAC 59.028 57.895 12.68 5.31 38.99 2.93
91 92 5.751586 CTTAGCCCCAAACCAAACTATAGA 58.248 41.667 6.78 0.00 0.00 1.98
107 108 6.282568 ACTATAGAGCCGATATAGGGGATT 57.717 41.667 6.78 0.00 37.48 3.01
110 111 2.025226 AGAGCCGATATAGGGGATTCGA 60.025 50.000 3.86 0.00 33.59 3.71
111 112 2.758979 GAGCCGATATAGGGGATTCGAA 59.241 50.000 0.00 0.00 33.59 3.71
135 149 2.619177 TCGATGCTCTAAGCTAGGTCAC 59.381 50.000 0.00 0.00 42.97 3.67
144 158 5.178797 TCTAAGCTAGGTCACTGATTTTGC 58.821 41.667 0.00 0.00 0.00 3.68
172 186 1.693640 CCCATGAAAGTGAGGGCCT 59.306 57.895 5.25 5.25 33.91 5.19
229 243 9.939424 ACTACCTCTGACCTTTAATATAAGACT 57.061 33.333 0.00 0.00 0.00 3.24
278 292 9.762381 ACAAAAATGTCTTATATTAAGGGACCA 57.238 29.630 0.00 0.00 0.00 4.02
291 306 3.130734 AGGGACCAAGGAGTAGCATTA 57.869 47.619 0.00 0.00 0.00 1.90
380 395 5.355350 ACTGCAGCTCACTATTTACAATTCC 59.645 40.000 15.27 0.00 0.00 3.01
434 451 6.695292 ATAAGCTTGAAATTTTGCAACTCG 57.305 33.333 9.86 0.00 0.00 4.18
459 476 7.378461 CGACAAAACTATTGCACTACAAATGTT 59.622 33.333 0.00 0.00 42.86 2.71
467 484 9.546909 CTATTGCACTACAAATGTTTAGAACTG 57.453 33.333 0.00 0.00 42.86 3.16
542 2887 4.602995 TGCGTGTTGACCTACAAAATTTC 58.397 39.130 0.00 0.00 40.36 2.17
600 4618 2.416972 GGGAGGTACTTCTACGCACAAG 60.417 54.545 4.85 0.00 41.55 3.16
663 4786 1.006922 GGGCTTCAACTGCAACTGC 60.007 57.895 0.00 0.00 42.50 4.40
677 4800 1.010935 AACTGCTGCATGTCGACTCG 61.011 55.000 17.92 8.74 0.00 4.18
890 5028 0.905809 TACCCTGCCTCCGCTTACAA 60.906 55.000 0.00 0.00 35.36 2.41
895 5033 2.453638 GCCTCCGCTTACAACGAGC 61.454 63.158 0.00 0.00 36.79 5.03
927 5070 8.260099 ACCCTATAAATACCTTAAGACCACTC 57.740 38.462 3.36 0.00 0.00 3.51
986 5137 3.503363 CCTACAGCAGAAGCAAATCACAA 59.497 43.478 0.00 0.00 45.49 3.33
999 5150 6.501781 AGCAAATCACAAGAAGAAAGAACTG 58.498 36.000 0.00 0.00 0.00 3.16
1068 5219 0.744414 CGGCGGACCAGATCAACATT 60.744 55.000 0.00 0.00 34.57 2.71
1213 5364 4.882427 TCATCGGCTAGCTATCCACTATAC 59.118 45.833 15.72 0.00 0.00 1.47
1216 5367 3.628487 CGGCTAGCTATCCACTATACTCC 59.372 52.174 15.72 0.00 0.00 3.85
1217 5368 4.601084 GGCTAGCTATCCACTATACTCCA 58.399 47.826 15.72 0.00 0.00 3.86
1218 5369 5.205056 GGCTAGCTATCCACTATACTCCAT 58.795 45.833 15.72 0.00 0.00 3.41
1219 5370 6.366340 GGCTAGCTATCCACTATACTCCATA 58.634 44.000 15.72 0.00 0.00 2.74
1220 5371 6.263617 GGCTAGCTATCCACTATACTCCATAC 59.736 46.154 15.72 0.00 0.00 2.39
1221 5372 6.829298 GCTAGCTATCCACTATACTCCATACA 59.171 42.308 7.70 0.00 0.00 2.29
1307 5462 4.050553 CGTGTTTCCTTACTTTGTACCGA 58.949 43.478 0.00 0.00 0.00 4.69
1309 5464 4.450080 GTGTTTCCTTACTTTGTACCGAGG 59.550 45.833 0.00 0.00 0.00 4.63
1430 5586 5.541845 TCGATTGATGCTTATAGAGGTTGG 58.458 41.667 0.00 0.00 0.00 3.77
1431 5587 4.692625 CGATTGATGCTTATAGAGGTTGGG 59.307 45.833 0.00 0.00 0.00 4.12
1434 5590 3.785887 TGATGCTTATAGAGGTTGGGGTT 59.214 43.478 0.00 0.00 0.00 4.11
1436 5592 5.430417 TGATGCTTATAGAGGTTGGGGTTAA 59.570 40.000 0.00 0.00 0.00 2.01
1449 5605 5.364778 GTTGGGGTTAAAGCAACATTCTTT 58.635 37.500 0.00 0.00 39.04 2.52
1450 5606 5.622346 TGGGGTTAAAGCAACATTCTTTT 57.378 34.783 0.00 0.00 39.04 2.27
1451 5607 5.995446 TGGGGTTAAAGCAACATTCTTTTT 58.005 33.333 0.00 0.00 39.04 1.94
1491 5647 2.793831 ATGCAATGAACTACCGGGC 58.206 52.632 6.32 0.00 0.00 6.13
1492 5648 0.751643 ATGCAATGAACTACCGGGCC 60.752 55.000 6.32 0.00 0.00 5.80
1493 5649 2.469516 GCAATGAACTACCGGGCCG 61.470 63.158 21.46 21.46 0.00 6.13
1516 5672 1.304254 TCACACCCACATTTGACACG 58.696 50.000 0.00 0.00 0.00 4.49
1518 5674 1.021202 ACACCCACATTTGACACGTG 58.979 50.000 15.48 15.48 0.00 4.49
1520 5676 2.214347 CACCCACATTTGACACGTGTA 58.786 47.619 23.44 6.65 0.00 2.90
1522 5678 3.997681 CACCCACATTTGACACGTGTATA 59.002 43.478 23.44 11.29 0.00 1.47
1523 5679 3.998341 ACCCACATTTGACACGTGTATAC 59.002 43.478 23.44 10.23 0.00 1.47
1524 5680 3.372822 CCCACATTTGACACGTGTATACC 59.627 47.826 23.44 9.83 0.00 2.73
1525 5681 4.250464 CCACATTTGACACGTGTATACCT 58.750 43.478 23.44 2.67 0.00 3.08
1550 5706 6.867662 ATAAAGGCGGAATATTCTTCAGTG 57.132 37.500 14.95 0.90 0.00 3.66
1554 5710 3.496870 GGCGGAATATTCTTCAGTGGGAT 60.497 47.826 14.95 0.00 0.00 3.85
1556 5712 4.691216 GCGGAATATTCTTCAGTGGGATAC 59.309 45.833 14.95 0.00 0.00 2.24
1572 5728 3.365767 GGGATACGACGTTCTATAGGTGC 60.366 52.174 5.50 0.00 37.60 5.01
1573 5729 3.501445 GGATACGACGTTCTATAGGTGCT 59.499 47.826 5.50 0.00 0.00 4.40
1574 5730 4.023365 GGATACGACGTTCTATAGGTGCTT 60.023 45.833 5.50 0.00 0.00 3.91
1577 5733 7.065085 GGATACGACGTTCTATAGGTGCTTATA 59.935 40.741 5.50 0.00 0.00 0.98
1603 5759 5.185056 TGACTTTGTCAATCTATCCGACAGA 59.815 40.000 0.00 0.00 39.78 3.41
1621 5777 5.447954 CGACAGATTAGTCTCTCGAATGTGT 60.448 44.000 7.04 4.00 43.05 3.72
1634 5790 5.929992 TCTCGAATGTGTTTGTAAAGGTAGG 59.070 40.000 0.00 0.00 0.00 3.18
1635 5791 5.856156 TCGAATGTGTTTGTAAAGGTAGGA 58.144 37.500 0.00 0.00 0.00 2.94
1648 5804 1.341531 AGGTAGGATATGCGTGACTGC 59.658 52.381 0.00 0.00 0.00 4.40
1653 5809 0.227234 GATATGCGTGACTGCGTTCG 59.773 55.000 0.10 0.00 37.81 3.95
1656 5812 1.071019 ATGCGTGACTGCGTTCGTAG 61.071 55.000 8.57 8.57 37.81 3.51
1657 5813 1.441515 GCGTGACTGCGTTCGTAGA 60.442 57.895 16.07 0.00 0.00 2.59
1658 5814 1.000233 GCGTGACTGCGTTCGTAGAA 61.000 55.000 16.07 2.57 45.90 2.10
1676 5832 6.980397 TCGTAGAAGATGAGTGTATGTACGTA 59.020 38.462 0.00 0.00 34.02 3.57
1732 5912 6.127168 TGGGATTCGAGATGTACACATAACTT 60.127 38.462 0.00 0.00 36.57 2.66
1736 5916 8.635877 ATTCGAGATGTACACATAACTTCTTC 57.364 34.615 0.00 0.00 36.57 2.87
1748 5928 9.267084 ACACATAACTTCTTCTTCTTCTTCTTC 57.733 33.333 0.00 0.00 0.00 2.87
1749 5929 9.487790 CACATAACTTCTTCTTCTTCTTCTTCT 57.512 33.333 0.00 0.00 0.00 2.85
1752 5932 9.719355 ATAACTTCTTCTTCTTCTTCTTCTTCC 57.281 33.333 0.00 0.00 0.00 3.46
1753 5933 7.373617 ACTTCTTCTTCTTCTTCTTCTTCCT 57.626 36.000 0.00 0.00 0.00 3.36
1754 5934 7.441836 ACTTCTTCTTCTTCTTCTTCTTCCTC 58.558 38.462 0.00 0.00 0.00 3.71
1755 5935 7.290014 ACTTCTTCTTCTTCTTCTTCTTCCTCT 59.710 37.037 0.00 0.00 0.00 3.69
1756 5936 7.610580 TCTTCTTCTTCTTCTTCTTCCTCTT 57.389 36.000 0.00 0.00 0.00 2.85
1757 5937 7.666623 TCTTCTTCTTCTTCTTCTTCCTCTTC 58.333 38.462 0.00 0.00 0.00 2.87
1758 5938 7.508977 TCTTCTTCTTCTTCTTCTTCCTCTTCT 59.491 37.037 0.00 0.00 0.00 2.85
1759 5939 7.610580 TCTTCTTCTTCTTCTTCCTCTTCTT 57.389 36.000 0.00 0.00 0.00 2.52
1760 5940 7.666623 TCTTCTTCTTCTTCTTCCTCTTCTTC 58.333 38.462 0.00 0.00 0.00 2.87
1761 5941 7.508977 TCTTCTTCTTCTTCTTCCTCTTCTTCT 59.491 37.037 0.00 0.00 0.00 2.85
1762 5942 7.610580 TCTTCTTCTTCTTCCTCTTCTTCTT 57.389 36.000 0.00 0.00 0.00 2.52
1763 5943 7.666623 TCTTCTTCTTCTTCCTCTTCTTCTTC 58.333 38.462 0.00 0.00 0.00 2.87
1764 5944 7.508977 TCTTCTTCTTCTTCCTCTTCTTCTTCT 59.491 37.037 0.00 0.00 0.00 2.85
1765 5945 7.610580 TCTTCTTCTTCCTCTTCTTCTTCTT 57.389 36.000 0.00 0.00 0.00 2.52
1766 5946 7.666623 TCTTCTTCTTCCTCTTCTTCTTCTTC 58.333 38.462 0.00 0.00 0.00 2.87
1767 5947 7.508977 TCTTCTTCTTCCTCTTCTTCTTCTTCT 59.491 37.037 0.00 0.00 0.00 2.85
1768 5948 7.610580 TCTTCTTCCTCTTCTTCTTCTTCTT 57.389 36.000 0.00 0.00 0.00 2.52
1769 5949 7.666623 TCTTCTTCCTCTTCTTCTTCTTCTTC 58.333 38.462 0.00 0.00 0.00 2.87
1770 5950 7.508977 TCTTCTTCCTCTTCTTCTTCTTCTTCT 59.491 37.037 0.00 0.00 0.00 2.85
1771 5951 7.610580 TCTTCCTCTTCTTCTTCTTCTTCTT 57.389 36.000 0.00 0.00 0.00 2.52
1772 5952 7.441017 TCTTCCTCTTCTTCTTCTTCTTCTTG 58.559 38.462 0.00 0.00 0.00 3.02
1773 5953 6.739331 TCCTCTTCTTCTTCTTCTTCTTGT 57.261 37.500 0.00 0.00 0.00 3.16
1774 5954 7.130681 TCCTCTTCTTCTTCTTCTTCTTGTT 57.869 36.000 0.00 0.00 0.00 2.83
1775 5955 7.213678 TCCTCTTCTTCTTCTTCTTCTTGTTC 58.786 38.462 0.00 0.00 0.00 3.18
1776 5956 7.070571 TCCTCTTCTTCTTCTTCTTCTTGTTCT 59.929 37.037 0.00 0.00 0.00 3.01
1777 5957 7.714813 CCTCTTCTTCTTCTTCTTCTTGTTCTT 59.285 37.037 0.00 0.00 0.00 2.52
1778 5958 8.655651 TCTTCTTCTTCTTCTTCTTGTTCTTC 57.344 34.615 0.00 0.00 0.00 2.87
1779 5959 8.482128 TCTTCTTCTTCTTCTTCTTGTTCTTCT 58.518 33.333 0.00 0.00 0.00 2.85
1780 5960 9.108284 CTTCTTCTTCTTCTTCTTGTTCTTCTT 57.892 33.333 0.00 0.00 0.00 2.52
1781 5961 9.454859 TTCTTCTTCTTCTTCTTGTTCTTCTTT 57.545 29.630 0.00 0.00 0.00 2.52
1784 5964 9.667107 TTCTTCTTCTTCTTGTTCTTCTTTACA 57.333 29.630 0.00 0.00 0.00 2.41
1785 5965 9.838339 TCTTCTTCTTCTTGTTCTTCTTTACAT 57.162 29.630 0.00 0.00 0.00 2.29
1787 5967 9.613428 TTCTTCTTCTTGTTCTTCTTTACATCA 57.387 29.630 0.00 0.00 0.00 3.07
1788 5968 9.046296 TCTTCTTCTTGTTCTTCTTTACATCAC 57.954 33.333 0.00 0.00 0.00 3.06
1789 5969 7.730364 TCTTCTTGTTCTTCTTTACATCACC 57.270 36.000 0.00 0.00 0.00 4.02
1790 5970 6.710744 TCTTCTTGTTCTTCTTTACATCACCC 59.289 38.462 0.00 0.00 0.00 4.61
1791 5971 6.187727 TCTTGTTCTTCTTTACATCACCCT 57.812 37.500 0.00 0.00 0.00 4.34
1792 5972 6.601332 TCTTGTTCTTCTTTACATCACCCTT 58.399 36.000 0.00 0.00 0.00 3.95
1793 5973 6.486657 TCTTGTTCTTCTTTACATCACCCTTG 59.513 38.462 0.00 0.00 0.00 3.61
1794 5974 5.690865 TGTTCTTCTTTACATCACCCTTGT 58.309 37.500 0.00 0.00 0.00 3.16
1795 5975 6.126409 TGTTCTTCTTTACATCACCCTTGTT 58.874 36.000 0.00 0.00 0.00 2.83
1796 5976 6.039270 TGTTCTTCTTTACATCACCCTTGTTG 59.961 38.462 0.00 0.00 0.00 3.33
1797 5977 5.935945 TCTTCTTTACATCACCCTTGTTGA 58.064 37.500 0.00 0.00 0.00 3.18
1798 5978 5.997746 TCTTCTTTACATCACCCTTGTTGAG 59.002 40.000 0.00 0.00 0.00 3.02
1799 5979 5.304686 TCTTTACATCACCCTTGTTGAGT 57.695 39.130 0.00 0.00 0.00 3.41
1800 5980 6.428083 TCTTTACATCACCCTTGTTGAGTA 57.572 37.500 0.00 0.00 0.00 2.59
1801 5981 7.016153 TCTTTACATCACCCTTGTTGAGTAT 57.984 36.000 0.00 0.00 0.00 2.12
1802 5982 7.458397 TCTTTACATCACCCTTGTTGAGTATT 58.542 34.615 0.00 0.00 0.00 1.89
1803 5983 8.598916 TCTTTACATCACCCTTGTTGAGTATTA 58.401 33.333 0.00 0.00 0.00 0.98
1804 5984 9.396022 CTTTACATCACCCTTGTTGAGTATTAT 57.604 33.333 0.00 0.00 0.00 1.28
1805 5985 8.731275 TTACATCACCCTTGTTGAGTATTATG 57.269 34.615 0.00 0.00 0.00 1.90
1806 5986 6.957631 ACATCACCCTTGTTGAGTATTATGA 58.042 36.000 0.00 0.00 0.00 2.15
1807 5987 7.577303 ACATCACCCTTGTTGAGTATTATGAT 58.423 34.615 0.00 0.00 0.00 2.45
1808 5988 8.055181 ACATCACCCTTGTTGAGTATTATGATT 58.945 33.333 0.00 0.00 0.00 2.57
1809 5989 9.559732 CATCACCCTTGTTGAGTATTATGATTA 57.440 33.333 0.00 0.00 0.00 1.75
1840 6020 9.863845 GAAGTATAAGATAGACTAGGATTTGGC 57.136 37.037 0.00 0.00 28.66 4.52
1841 6021 9.608718 AAGTATAAGATAGACTAGGATTTGGCT 57.391 33.333 0.00 0.00 28.66 4.75
1842 6022 9.608718 AGTATAAGATAGACTAGGATTTGGCTT 57.391 33.333 0.00 0.00 0.00 4.35
1847 6027 8.734593 AGATAGACTAGGATTTGGCTTTATCT 57.265 34.615 0.00 0.00 0.00 1.98
1848 6028 9.165057 AGATAGACTAGGATTTGGCTTTATCTT 57.835 33.333 0.00 0.00 0.00 2.40
1849 6029 9.213799 GATAGACTAGGATTTGGCTTTATCTTG 57.786 37.037 0.00 0.00 0.00 3.02
1850 6030 6.963322 AGACTAGGATTTGGCTTTATCTTGT 58.037 36.000 0.00 0.00 0.00 3.16
1851 6031 7.051000 AGACTAGGATTTGGCTTTATCTTGTC 58.949 38.462 0.00 0.00 0.00 3.18
1852 6032 6.963322 ACTAGGATTTGGCTTTATCTTGTCT 58.037 36.000 0.00 0.00 0.00 3.41
1853 6033 7.406104 ACTAGGATTTGGCTTTATCTTGTCTT 58.594 34.615 0.00 0.00 0.00 3.01
1854 6034 6.521151 AGGATTTGGCTTTATCTTGTCTTG 57.479 37.500 0.00 0.00 0.00 3.02
1855 6035 6.012745 AGGATTTGGCTTTATCTTGTCTTGT 58.987 36.000 0.00 0.00 0.00 3.16
1856 6036 7.175104 AGGATTTGGCTTTATCTTGTCTTGTA 58.825 34.615 0.00 0.00 0.00 2.41
1857 6037 7.121315 AGGATTTGGCTTTATCTTGTCTTGTAC 59.879 37.037 0.00 0.00 0.00 2.90
1858 6038 7.121315 GGATTTGGCTTTATCTTGTCTTGTACT 59.879 37.037 0.00 0.00 0.00 2.73
1859 6039 7.817418 TTTGGCTTTATCTTGTCTTGTACTT 57.183 32.000 0.00 0.00 0.00 2.24
1860 6040 7.435068 TTGGCTTTATCTTGTCTTGTACTTC 57.565 36.000 0.00 0.00 0.00 3.01
1861 6041 6.530120 TGGCTTTATCTTGTCTTGTACTTCA 58.470 36.000 0.00 0.00 0.00 3.02
1862 6042 6.995686 TGGCTTTATCTTGTCTTGTACTTCAA 59.004 34.615 0.00 0.00 34.61 2.69
1863 6043 7.500892 TGGCTTTATCTTGTCTTGTACTTCAAA 59.499 33.333 0.00 0.00 35.48 2.69
1864 6044 8.515414 GGCTTTATCTTGTCTTGTACTTCAAAT 58.485 33.333 0.00 0.00 35.48 2.32
1865 6045 9.899226 GCTTTATCTTGTCTTGTACTTCAAATT 57.101 29.630 0.00 0.00 35.48 1.82
1868 6048 7.823745 ATCTTGTCTTGTACTTCAAATTGGT 57.176 32.000 0.00 0.00 35.48 3.67
1869 6049 7.259290 TCTTGTCTTGTACTTCAAATTGGTC 57.741 36.000 0.00 0.00 35.48 4.02
1870 6050 6.826231 TCTTGTCTTGTACTTCAAATTGGTCA 59.174 34.615 0.00 0.00 35.48 4.02
1871 6051 7.502226 TCTTGTCTTGTACTTCAAATTGGTCAT 59.498 33.333 0.00 0.00 35.48 3.06
1872 6052 7.581213 TGTCTTGTACTTCAAATTGGTCATT 57.419 32.000 0.00 0.00 35.48 2.57
1873 6053 7.424803 TGTCTTGTACTTCAAATTGGTCATTG 58.575 34.615 0.00 0.00 35.48 2.82
1874 6054 7.284261 TGTCTTGTACTTCAAATTGGTCATTGA 59.716 33.333 0.00 0.00 35.48 2.57
1875 6055 8.299570 GTCTTGTACTTCAAATTGGTCATTGAT 58.700 33.333 0.00 0.00 35.63 2.57
1876 6056 8.859090 TCTTGTACTTCAAATTGGTCATTGATT 58.141 29.630 0.00 0.00 35.63 2.57
1877 6057 9.132521 CTTGTACTTCAAATTGGTCATTGATTC 57.867 33.333 0.00 0.00 35.63 2.52
1878 6058 8.408043 TGTACTTCAAATTGGTCATTGATTCT 57.592 30.769 0.00 0.00 35.63 2.40
1879 6059 8.859090 TGTACTTCAAATTGGTCATTGATTCTT 58.141 29.630 0.00 0.00 35.63 2.52
1909 6089 8.995027 ATATGTCCATAAGGCTCAAACAATAA 57.005 30.769 0.00 0.00 33.74 1.40
1910 6090 7.716799 ATGTCCATAAGGCTCAAACAATAAA 57.283 32.000 0.00 0.00 33.74 1.40
1911 6091 7.716799 TGTCCATAAGGCTCAAACAATAAAT 57.283 32.000 0.00 0.00 33.74 1.40
1912 6092 8.815565 TGTCCATAAGGCTCAAACAATAAATA 57.184 30.769 0.00 0.00 33.74 1.40
1913 6093 9.249053 TGTCCATAAGGCTCAAACAATAAATAA 57.751 29.630 0.00 0.00 33.74 1.40
1920 6100 9.822185 AAGGCTCAAACAATAAATAATGATTCC 57.178 29.630 0.00 0.00 0.00 3.01
1921 6101 8.980596 AGGCTCAAACAATAAATAATGATTCCA 58.019 29.630 0.00 0.00 0.00 3.53
1922 6102 9.034544 GGCTCAAACAATAAATAATGATTCCAC 57.965 33.333 0.00 0.00 0.00 4.02
1923 6103 9.034544 GCTCAAACAATAAATAATGATTCCACC 57.965 33.333 0.00 0.00 0.00 4.61
1937 6117 7.830099 ATGATTCCACCAATCTCTTTATTCC 57.170 36.000 0.00 0.00 41.58 3.01
1938 6118 6.129179 TGATTCCACCAATCTCTTTATTCCC 58.871 40.000 0.00 0.00 41.58 3.97
1939 6119 5.796502 TTCCACCAATCTCTTTATTCCCT 57.203 39.130 0.00 0.00 0.00 4.20
1940 6120 5.796502 TCCACCAATCTCTTTATTCCCTT 57.203 39.130 0.00 0.00 0.00 3.95
1941 6121 6.901615 TCCACCAATCTCTTTATTCCCTTA 57.098 37.500 0.00 0.00 0.00 2.69
1942 6122 7.465900 TCCACCAATCTCTTTATTCCCTTAT 57.534 36.000 0.00 0.00 0.00 1.73
1943 6123 8.575736 TCCACCAATCTCTTTATTCCCTTATA 57.424 34.615 0.00 0.00 0.00 0.98
1944 6124 9.009675 TCCACCAATCTCTTTATTCCCTTATAA 57.990 33.333 0.00 0.00 0.00 0.98
1945 6125 9.067986 CCACCAATCTCTTTATTCCCTTATAAC 57.932 37.037 0.00 0.00 0.00 1.89
1946 6126 9.627123 CACCAATCTCTTTATTCCCTTATAACA 57.373 33.333 0.00 0.00 0.00 2.41
1962 6142 9.449719 CCCTTATAACATGGTATCAATCTAACC 57.550 37.037 6.52 0.00 0.00 2.85
1963 6143 9.151471 CCTTATAACATGGTATCAATCTAACCG 57.849 37.037 6.52 0.00 35.98 4.44
1964 6144 9.923143 CTTATAACATGGTATCAATCTAACCGA 57.077 33.333 6.52 0.00 35.98 4.69
1965 6145 9.701098 TTATAACATGGTATCAATCTAACCGAC 57.299 33.333 6.52 0.00 35.98 4.79
1966 6146 4.957296 ACATGGTATCAATCTAACCGACC 58.043 43.478 0.00 0.00 35.98 4.79
1967 6147 4.202326 ACATGGTATCAATCTAACCGACCC 60.202 45.833 0.00 0.00 35.98 4.46
1968 6148 3.376636 TGGTATCAATCTAACCGACCCA 58.623 45.455 0.00 0.00 35.98 4.51
1969 6149 3.775866 TGGTATCAATCTAACCGACCCAA 59.224 43.478 0.00 0.00 35.98 4.12
1970 6150 4.141801 TGGTATCAATCTAACCGACCCAAG 60.142 45.833 0.00 0.00 35.98 3.61
1971 6151 2.396590 TCAATCTAACCGACCCAAGC 57.603 50.000 0.00 0.00 0.00 4.01
1972 6152 1.065709 TCAATCTAACCGACCCAAGCC 60.066 52.381 0.00 0.00 0.00 4.35
1973 6153 0.107848 AATCTAACCGACCCAAGCCG 60.108 55.000 0.00 0.00 0.00 5.52
1974 6154 1.262640 ATCTAACCGACCCAAGCCGT 61.263 55.000 0.00 0.00 0.00 5.68
1975 6155 1.447314 CTAACCGACCCAAGCCGTC 60.447 63.158 0.00 0.00 0.00 4.79
1976 6156 2.847435 CTAACCGACCCAAGCCGTCC 62.847 65.000 0.00 0.00 0.00 4.79
1984 6164 3.423154 CAAGCCGTCCACCGCTTC 61.423 66.667 2.73 0.00 32.94 3.86
1985 6165 4.699522 AAGCCGTCCACCGCTTCC 62.700 66.667 0.09 0.00 30.61 3.46
2025 6205 4.530857 CGGTCGGCCTCCATGACC 62.531 72.222 14.89 14.89 46.91 4.02
2056 6236 4.719369 GCGCCGGCCGTATCTAGG 62.719 72.222 26.12 7.77 39.71 3.02
2057 6237 4.052229 CGCCGGCCGTATCTAGGG 62.052 72.222 26.12 12.01 0.00 3.53
2058 6238 2.916181 GCCGGCCGTATCTAGGGT 60.916 66.667 26.12 0.00 33.89 4.34
2059 6239 2.505167 GCCGGCCGTATCTAGGGTT 61.505 63.158 26.12 0.00 33.89 4.11
2060 6240 1.664306 CCGGCCGTATCTAGGGTTC 59.336 63.158 26.12 0.00 33.89 3.62
2061 6241 1.285023 CGGCCGTATCTAGGGTTCG 59.715 63.158 19.50 0.00 33.89 3.95
2062 6242 1.450531 CGGCCGTATCTAGGGTTCGT 61.451 60.000 19.50 0.00 33.89 3.85
2063 6243 0.313357 GGCCGTATCTAGGGTTCGTC 59.687 60.000 0.00 0.00 33.89 4.20
2064 6244 0.313357 GCCGTATCTAGGGTTCGTCC 59.687 60.000 0.00 0.00 33.89 4.79
2065 6245 0.590195 CCGTATCTAGGGTTCGTCCG 59.410 60.000 0.00 0.00 37.00 4.79
2066 6246 0.040603 CGTATCTAGGGTTCGTCCGC 60.041 60.000 0.00 0.00 37.00 5.54
2067 6247 0.313357 GTATCTAGGGTTCGTCCGCC 59.687 60.000 0.00 0.00 37.00 6.13
2068 6248 0.106569 TATCTAGGGTTCGTCCGCCA 60.107 55.000 0.00 0.00 37.00 5.69
2069 6249 0.974010 ATCTAGGGTTCGTCCGCCAA 60.974 55.000 0.00 0.00 37.00 4.52
2070 6250 0.974010 TCTAGGGTTCGTCCGCCAAT 60.974 55.000 0.00 0.00 37.00 3.16
2071 6251 0.529992 CTAGGGTTCGTCCGCCAATC 60.530 60.000 0.00 0.00 37.00 2.67
2072 6252 2.287457 TAGGGTTCGTCCGCCAATCG 62.287 60.000 0.00 0.00 37.00 3.34
2073 6253 2.433664 GGTTCGTCCGCCAATCGT 60.434 61.111 0.00 0.00 36.19 3.73
2074 6254 2.736682 GGTTCGTCCGCCAATCGTG 61.737 63.158 0.00 0.00 36.19 4.35
2075 6255 2.025418 GTTCGTCCGCCAATCGTGT 61.025 57.895 0.00 0.00 36.19 4.49
2076 6256 2.024868 TTCGTCCGCCAATCGTGTG 61.025 57.895 0.00 0.00 36.19 3.82
2077 6257 3.487202 CGTCCGCCAATCGTGTGG 61.487 66.667 3.14 3.14 42.05 4.17
2078 6258 2.047655 GTCCGCCAATCGTGTGGA 60.048 61.111 10.74 3.74 41.65 4.02
2079 6259 1.449601 GTCCGCCAATCGTGTGGAT 60.450 57.895 10.74 0.00 41.65 3.41
2080 6260 1.153449 TCCGCCAATCGTGTGGATC 60.153 57.895 10.74 0.00 41.65 3.36
2081 6261 1.449423 CCGCCAATCGTGTGGATCA 60.449 57.895 10.74 0.00 41.65 2.92
2082 6262 1.431488 CCGCCAATCGTGTGGATCAG 61.431 60.000 10.74 0.25 41.65 2.90
2083 6263 0.740868 CGCCAATCGTGTGGATCAGT 60.741 55.000 10.74 0.00 41.65 3.41
2084 6264 1.453155 GCCAATCGTGTGGATCAGTT 58.547 50.000 10.74 0.00 41.65 3.16
2085 6265 1.131126 GCCAATCGTGTGGATCAGTTG 59.869 52.381 10.74 0.00 41.65 3.16
2086 6266 1.131126 CCAATCGTGTGGATCAGTTGC 59.869 52.381 0.00 0.00 41.65 4.17
2087 6267 1.131126 CAATCGTGTGGATCAGTTGCC 59.869 52.381 0.00 0.00 33.02 4.52
2088 6268 0.392998 ATCGTGTGGATCAGTTGCCC 60.393 55.000 0.00 0.00 0.00 5.36
2089 6269 1.003355 CGTGTGGATCAGTTGCCCT 60.003 57.895 0.00 0.00 0.00 5.19
2090 6270 0.249120 CGTGTGGATCAGTTGCCCTA 59.751 55.000 0.00 0.00 0.00 3.53
2091 6271 1.740380 CGTGTGGATCAGTTGCCCTAG 60.740 57.143 0.00 0.00 0.00 3.02
2092 6272 1.555075 GTGTGGATCAGTTGCCCTAGA 59.445 52.381 0.00 0.00 0.00 2.43
2093 6273 1.833630 TGTGGATCAGTTGCCCTAGAG 59.166 52.381 0.00 0.00 0.00 2.43
2094 6274 2.111384 GTGGATCAGTTGCCCTAGAGA 58.889 52.381 0.00 0.00 0.00 3.10
2095 6275 2.102252 GTGGATCAGTTGCCCTAGAGAG 59.898 54.545 0.00 0.00 0.00 3.20
2096 6276 2.292521 TGGATCAGTTGCCCTAGAGAGT 60.293 50.000 0.00 0.00 0.00 3.24
2097 6277 2.364002 GGATCAGTTGCCCTAGAGAGTC 59.636 54.545 0.00 0.00 0.00 3.36
2098 6278 2.909504 TCAGTTGCCCTAGAGAGTCT 57.090 50.000 0.00 0.00 0.00 3.24
2099 6279 3.176924 TCAGTTGCCCTAGAGAGTCTT 57.823 47.619 0.00 0.00 0.00 3.01
2100 6280 3.511477 TCAGTTGCCCTAGAGAGTCTTT 58.489 45.455 0.00 0.00 0.00 2.52
2101 6281 3.904339 TCAGTTGCCCTAGAGAGTCTTTT 59.096 43.478 0.00 0.00 0.00 2.27
2102 6282 4.021016 TCAGTTGCCCTAGAGAGTCTTTTC 60.021 45.833 0.00 0.00 0.00 2.29
2103 6283 3.262151 AGTTGCCCTAGAGAGTCTTTTCC 59.738 47.826 0.00 0.00 0.00 3.13
2104 6284 2.188817 TGCCCTAGAGAGTCTTTTCCC 58.811 52.381 0.00 0.00 0.00 3.97
2105 6285 1.487142 GCCCTAGAGAGTCTTTTCCCC 59.513 57.143 0.00 0.00 0.00 4.81
2106 6286 1.757699 CCCTAGAGAGTCTTTTCCCCG 59.242 57.143 0.00 0.00 0.00 5.73
2107 6287 2.623502 CCCTAGAGAGTCTTTTCCCCGA 60.624 54.545 0.00 0.00 0.00 5.14
2108 6288 3.301274 CCTAGAGAGTCTTTTCCCCGAT 58.699 50.000 0.00 0.00 0.00 4.18
2109 6289 3.319689 CCTAGAGAGTCTTTTCCCCGATC 59.680 52.174 0.00 0.00 0.00 3.69
2110 6290 2.112190 AGAGAGTCTTTTCCCCGATCC 58.888 52.381 0.00 0.00 0.00 3.36
2111 6291 2.112190 GAGAGTCTTTTCCCCGATCCT 58.888 52.381 0.00 0.00 0.00 3.24
2112 6292 2.502130 GAGAGTCTTTTCCCCGATCCTT 59.498 50.000 0.00 0.00 0.00 3.36
2113 6293 2.913617 AGAGTCTTTTCCCCGATCCTTT 59.086 45.455 0.00 0.00 0.00 3.11
2114 6294 3.010420 GAGTCTTTTCCCCGATCCTTTG 58.990 50.000 0.00 0.00 0.00 2.77
2115 6295 2.642807 AGTCTTTTCCCCGATCCTTTGA 59.357 45.455 0.00 0.00 0.00 2.69
2116 6296 3.267031 AGTCTTTTCCCCGATCCTTTGAT 59.733 43.478 0.00 0.00 0.00 2.57
2117 6297 3.628032 GTCTTTTCCCCGATCCTTTGATC 59.372 47.826 0.00 0.00 43.36 2.92
2118 6298 2.729028 TTTCCCCGATCCTTTGATCC 57.271 50.000 0.00 0.00 43.82 3.36
2119 6299 0.468226 TTCCCCGATCCTTTGATCCG 59.532 55.000 0.00 0.00 43.82 4.18
2120 6300 1.071471 CCCCGATCCTTTGATCCGG 59.929 63.158 0.00 0.00 43.82 5.14
2121 6301 1.407656 CCCCGATCCTTTGATCCGGA 61.408 60.000 6.61 6.61 44.50 5.14
2122 6302 0.034059 CCCGATCCTTTGATCCGGAG 59.966 60.000 11.34 0.00 44.50 4.63
2123 6303 0.753262 CCGATCCTTTGATCCGGAGT 59.247 55.000 11.34 0.00 43.82 3.85
2124 6304 1.139058 CCGATCCTTTGATCCGGAGTT 59.861 52.381 11.34 0.00 43.82 3.01
2125 6305 2.420129 CCGATCCTTTGATCCGGAGTTT 60.420 50.000 11.34 0.00 43.82 2.66
2126 6306 3.270877 CGATCCTTTGATCCGGAGTTTT 58.729 45.455 11.34 0.00 43.82 2.43
2127 6307 3.309954 CGATCCTTTGATCCGGAGTTTTC 59.690 47.826 11.34 2.52 43.82 2.29
2128 6308 4.518249 GATCCTTTGATCCGGAGTTTTCT 58.482 43.478 11.34 0.00 41.37 2.52
2129 6309 3.939066 TCCTTTGATCCGGAGTTTTCTC 58.061 45.455 11.34 1.21 45.49 2.87
2130 6310 3.583086 TCCTTTGATCCGGAGTTTTCTCT 59.417 43.478 11.34 0.00 45.52 3.10
2131 6311 3.935828 CCTTTGATCCGGAGTTTTCTCTC 59.064 47.826 11.34 0.00 45.52 3.20
2132 6312 4.323104 CCTTTGATCCGGAGTTTTCTCTCT 60.323 45.833 11.34 0.00 45.52 3.10
2133 6313 4.457834 TTGATCCGGAGTTTTCTCTCTC 57.542 45.455 11.34 0.00 45.52 3.20
2134 6314 3.702792 TGATCCGGAGTTTTCTCTCTCT 58.297 45.455 11.34 0.00 45.52 3.10
2135 6315 3.697045 TGATCCGGAGTTTTCTCTCTCTC 59.303 47.826 11.34 0.00 45.52 3.20
2136 6316 2.085320 TCCGGAGTTTTCTCTCTCTCG 58.915 52.381 0.00 0.00 45.52 4.04
2137 6317 1.468395 CCGGAGTTTTCTCTCTCTCGC 60.468 57.143 0.00 0.00 45.52 5.03
2138 6318 1.468395 CGGAGTTTTCTCTCTCTCGCC 60.468 57.143 0.00 0.00 45.52 5.54
2139 6319 1.468395 GGAGTTTTCTCTCTCTCGCCG 60.468 57.143 0.00 0.00 45.52 6.46
2140 6320 0.528470 AGTTTTCTCTCTCTCGCCGG 59.472 55.000 0.00 0.00 0.00 6.13
2141 6321 0.244178 GTTTTCTCTCTCTCGCCGGT 59.756 55.000 1.90 0.00 0.00 5.28
2142 6322 0.526662 TTTTCTCTCTCTCGCCGGTC 59.473 55.000 1.90 0.00 0.00 4.79
2143 6323 1.645704 TTTCTCTCTCTCGCCGGTCG 61.646 60.000 1.90 7.73 40.15 4.79
2144 6324 2.799814 TTCTCTCTCTCGCCGGTCGT 62.800 60.000 16.00 0.00 39.67 4.34
2145 6325 2.359602 TCTCTCTCGCCGGTCGTT 60.360 61.111 16.00 0.00 39.67 3.85
2146 6326 1.924320 CTCTCTCTCGCCGGTCGTTT 61.924 60.000 16.00 0.00 39.67 3.60
2147 6327 1.080705 CTCTCTCGCCGGTCGTTTT 60.081 57.895 16.00 0.00 39.67 2.43
2148 6328 1.344942 CTCTCTCGCCGGTCGTTTTG 61.345 60.000 16.00 7.31 39.67 2.44
2149 6329 1.372499 CTCTCGCCGGTCGTTTTGA 60.372 57.895 16.00 10.26 39.67 2.69
2150 6330 0.736325 CTCTCGCCGGTCGTTTTGAT 60.736 55.000 16.00 0.00 39.67 2.57
2151 6331 0.734942 TCTCGCCGGTCGTTTTGATC 60.735 55.000 16.00 0.00 39.67 2.92
2152 6332 1.005984 TCGCCGGTCGTTTTGATCA 60.006 52.632 16.00 0.00 39.67 2.92
2153 6333 1.011968 TCGCCGGTCGTTTTGATCAG 61.012 55.000 16.00 0.00 39.67 2.90
2154 6334 1.134694 GCCGGTCGTTTTGATCAGC 59.865 57.895 1.90 0.00 0.00 4.26
2155 6335 1.419922 CCGGTCGTTTTGATCAGCG 59.580 57.895 0.00 2.85 0.00 5.18
2156 6336 1.289109 CCGGTCGTTTTGATCAGCGT 61.289 55.000 13.39 0.00 0.00 5.07
2157 6337 0.511221 CGGTCGTTTTGATCAGCGTT 59.489 50.000 13.39 0.00 0.00 4.84
2158 6338 1.070175 CGGTCGTTTTGATCAGCGTTT 60.070 47.619 13.39 0.00 0.00 3.60
2159 6339 2.156117 CGGTCGTTTTGATCAGCGTTTA 59.844 45.455 13.39 0.00 0.00 2.01
2160 6340 3.476181 GGTCGTTTTGATCAGCGTTTAC 58.524 45.455 13.39 7.03 0.00 2.01
2161 6341 3.185797 GGTCGTTTTGATCAGCGTTTACT 59.814 43.478 13.39 0.00 0.00 2.24
2162 6342 4.319261 GGTCGTTTTGATCAGCGTTTACTT 60.319 41.667 13.39 0.00 0.00 2.24
2163 6343 5.202640 GTCGTTTTGATCAGCGTTTACTTT 58.797 37.500 13.39 0.00 0.00 2.66
2164 6344 5.679792 GTCGTTTTGATCAGCGTTTACTTTT 59.320 36.000 13.39 0.00 0.00 2.27
2165 6345 6.195798 GTCGTTTTGATCAGCGTTTACTTTTT 59.804 34.615 13.39 0.00 0.00 1.94
2166 6346 6.195613 TCGTTTTGATCAGCGTTTACTTTTTG 59.804 34.615 13.39 0.00 0.00 2.44
2167 6347 6.559521 CGTTTTGATCAGCGTTTACTTTTTGG 60.560 38.462 0.00 0.00 0.00 3.28
2168 6348 5.508200 TTGATCAGCGTTTACTTTTTGGT 57.492 34.783 0.00 0.00 0.00 3.67
2169 6349 5.508200 TGATCAGCGTTTACTTTTTGGTT 57.492 34.783 0.00 0.00 0.00 3.67
2170 6350 5.897050 TGATCAGCGTTTACTTTTTGGTTT 58.103 33.333 0.00 0.00 0.00 3.27
2171 6351 6.334202 TGATCAGCGTTTACTTTTTGGTTTT 58.666 32.000 0.00 0.00 0.00 2.43
2172 6352 6.474102 TGATCAGCGTTTACTTTTTGGTTTTC 59.526 34.615 0.00 0.00 0.00 2.29
2173 6353 5.103687 TCAGCGTTTACTTTTTGGTTTTCC 58.896 37.500 0.00 0.00 41.14 3.13
2191 6371 7.796838 GGTTTTCCAATCTAAGATTTGTTTGC 58.203 34.615 0.00 0.00 40.31 3.68
2192 6372 7.359181 GGTTTTCCAATCTAAGATTTGTTTGCG 60.359 37.037 0.00 0.00 40.31 4.85
2193 6373 5.957842 TCCAATCTAAGATTTGTTTGCGT 57.042 34.783 0.00 0.00 0.00 5.24
2194 6374 5.938322 TCCAATCTAAGATTTGTTTGCGTC 58.062 37.500 0.00 0.00 0.00 5.19
2195 6375 4.788100 CCAATCTAAGATTTGTTTGCGTCG 59.212 41.667 0.00 0.00 0.00 5.12
2196 6376 3.449322 TCTAAGATTTGTTTGCGTCGC 57.551 42.857 11.10 11.10 0.00 5.19
2197 6377 2.158841 TCTAAGATTTGTTTGCGTCGCC 59.841 45.455 15.88 0.00 0.00 5.54
2198 6378 0.039527 AAGATTTGTTTGCGTCGCCC 60.040 50.000 15.88 3.14 0.00 6.13
2199 6379 1.795962 GATTTGTTTGCGTCGCCCG 60.796 57.895 15.88 0.00 40.40 6.13
2200 6380 2.177654 GATTTGTTTGCGTCGCCCGA 62.178 55.000 15.88 0.00 39.56 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 5.069251 CCCCTATATCGGCTCTATAGTTTGG 59.931 48.000 0.00 4.49 30.43 3.28
91 92 2.526888 TCGAATCCCCTATATCGGCT 57.473 50.000 0.00 0.00 36.05 5.52
107 108 2.359214 AGCTTAGAGCATCGACATTCGA 59.641 45.455 0.00 0.00 45.90 3.71
110 111 3.639094 ACCTAGCTTAGAGCATCGACATT 59.361 43.478 0.00 0.00 45.56 2.71
111 112 3.226777 ACCTAGCTTAGAGCATCGACAT 58.773 45.455 0.00 0.00 45.56 3.06
135 149 0.711670 GCACATGCACGCAAAATCAG 59.288 50.000 0.00 0.00 41.59 2.90
161 175 2.529744 GGTGTCCAGGCCCTCACTT 61.530 63.158 0.00 0.00 0.00 3.16
172 186 2.040947 TGCAATAGGTTGATGGTGTCCA 59.959 45.455 0.00 0.00 37.53 4.02
277 291 5.277345 GGCGTTTACATAATGCTACTCCTTG 60.277 44.000 0.00 0.00 0.00 3.61
278 292 4.814771 GGCGTTTACATAATGCTACTCCTT 59.185 41.667 0.00 0.00 0.00 3.36
291 306 0.323360 AGGTGCATGGGCGTTTACAT 60.323 50.000 0.00 0.00 45.35 2.29
341 356 1.897133 TGCAGTAGTACGGACCACAAT 59.103 47.619 4.47 0.00 0.00 2.71
347 362 0.809385 TGAGCTGCAGTAGTACGGAC 59.191 55.000 16.64 0.00 0.00 4.79
434 451 8.574196 AACATTTGTAGTGCAATAGTTTTGTC 57.426 30.769 0.00 0.00 36.89 3.18
459 476 8.855279 CACAACAAAATCGAAAAACAGTTCTAA 58.145 29.630 0.00 0.00 0.00 2.10
467 484 3.839600 GCGCCACAACAAAATCGAAAAAC 60.840 43.478 0.00 0.00 0.00 2.43
542 2887 8.500837 TCGCAAATCAAACAGTTATAAACTTG 57.499 30.769 0.00 0.00 40.46 3.16
593 4611 1.021202 TTTTGGTGGAGACTTGTGCG 58.979 50.000 0.00 0.00 0.00 5.34
663 4786 0.388520 TTGACCGAGTCGACATGCAG 60.389 55.000 19.50 3.98 34.95 4.41
796 4927 2.658679 CTATTGGACGGCCGGCATCA 62.659 60.000 35.87 20.88 36.79 3.07
859 4990 1.656652 GCAGGGTACGTACGTCTAGA 58.343 55.000 26.53 3.94 0.00 2.43
890 5028 6.932960 GGTATTTATAGGGTTTATGTGCTCGT 59.067 38.462 0.00 0.00 0.00 4.18
927 5070 3.907260 ATCAGGGCACGCTGGTGTG 62.907 63.158 13.94 9.59 46.13 3.82
986 5137 3.685139 TCGCCATCAGTTCTTTCTTCT 57.315 42.857 0.00 0.00 0.00 2.85
1068 5219 4.077184 GTCACATCCGGCCGGTCA 62.077 66.667 41.57 26.33 36.47 4.02
1213 5364 3.066900 CGGAGTAGGAGTTGTGTATGGAG 59.933 52.174 0.00 0.00 0.00 3.86
1216 5367 2.758979 ACCGGAGTAGGAGTTGTGTATG 59.241 50.000 9.46 0.00 34.73 2.39
1217 5368 3.097342 ACCGGAGTAGGAGTTGTGTAT 57.903 47.619 9.46 0.00 34.73 2.29
1218 5369 2.592102 ACCGGAGTAGGAGTTGTGTA 57.408 50.000 9.46 0.00 34.73 2.90
1219 5370 2.592102 TACCGGAGTAGGAGTTGTGT 57.408 50.000 9.46 0.00 34.73 3.72
1220 5371 4.205587 AGTATACCGGAGTAGGAGTTGTG 58.794 47.826 9.46 0.00 34.73 3.33
1221 5372 4.516652 AGTATACCGGAGTAGGAGTTGT 57.483 45.455 9.46 0.00 34.73 3.32
1294 5449 1.002315 GCACCCCTCGGTACAAAGTAA 59.998 52.381 0.00 0.00 42.04 2.24
1307 5462 2.831770 CATATCGCCAGCACCCCT 59.168 61.111 0.00 0.00 0.00 4.79
1309 5464 1.963338 GAGCATATCGCCAGCACCC 60.963 63.158 0.00 0.00 44.04 4.61
1319 5474 3.000041 TGACAAACCACACGAGCATATC 59.000 45.455 0.00 0.00 0.00 1.63
1328 5483 2.645802 TGTAACCCTGACAAACCACAC 58.354 47.619 0.00 0.00 0.00 3.82
1449 5605 6.526526 TGTCTACTGTACATGCTTGGTAAAA 58.473 36.000 0.00 0.00 0.00 1.52
1450 5606 6.104146 TGTCTACTGTACATGCTTGGTAAA 57.896 37.500 0.00 0.00 0.00 2.01
1451 5607 5.731957 TGTCTACTGTACATGCTTGGTAA 57.268 39.130 0.00 0.00 0.00 2.85
1452 5608 5.660460 CATGTCTACTGTACATGCTTGGTA 58.340 41.667 9.93 0.00 45.43 3.25
1453 5609 4.507710 CATGTCTACTGTACATGCTTGGT 58.492 43.478 9.93 0.00 45.43 3.67
1484 5640 4.781616 TGTGATCCCGGCCCGGTA 62.782 66.667 22.94 5.34 46.80 4.02
1494 5650 2.228822 GTGTCAAATGTGGGTGTGATCC 59.771 50.000 0.00 0.00 0.00 3.36
1524 5680 8.499162 CACTGAAGAATATTCCGCCTTTATAAG 58.501 37.037 11.92 2.08 0.00 1.73
1525 5681 7.444183 CCACTGAAGAATATTCCGCCTTTATAA 59.556 37.037 11.92 0.00 0.00 0.98
1533 5689 3.194005 TCCCACTGAAGAATATTCCGC 57.806 47.619 11.92 5.16 0.00 5.54
1550 5706 3.365767 GCACCTATAGAACGTCGTATCCC 60.366 52.174 0.00 0.00 0.00 3.85
1554 5710 7.728847 TTATAAGCACCTATAGAACGTCGTA 57.271 36.000 0.00 0.00 0.00 3.43
1556 5712 7.270793 GTCATTATAAGCACCTATAGAACGTCG 59.729 40.741 0.00 0.00 0.00 5.12
1559 5715 9.477484 AAAGTCATTATAAGCACCTATAGAACG 57.523 33.333 0.00 0.00 0.00 3.95
1562 5718 9.982651 GACAAAGTCATTATAAGCACCTATAGA 57.017 33.333 0.00 0.00 32.09 1.98
1574 5730 9.692749 GTCGGATAGATTGACAAAGTCATTATA 57.307 33.333 0.12 0.48 42.40 0.98
1577 5733 6.406370 TGTCGGATAGATTGACAAAGTCATT 58.594 36.000 0.12 0.00 42.40 2.57
1599 5755 5.906113 ACACATTCGAGAGACTAATCTGT 57.094 39.130 0.00 0.00 41.84 3.41
1603 5759 8.827177 TTTACAAACACATTCGAGAGACTAAT 57.173 30.769 0.00 0.00 41.84 1.73
1621 5777 5.813672 GTCACGCATATCCTACCTTTACAAA 59.186 40.000 0.00 0.00 0.00 2.83
1634 5790 0.227234 CGAACGCAGTCACGCATATC 59.773 55.000 0.00 0.00 45.00 1.63
1635 5791 0.457853 ACGAACGCAGTCACGCATAT 60.458 50.000 0.00 0.00 45.00 1.78
1648 5804 5.570344 ACATACACTCATCTTCTACGAACG 58.430 41.667 0.00 0.00 0.00 3.95
1679 5835 8.995220 AGCACGTACAGTATATTTTTGAGAAAA 58.005 29.630 0.00 0.00 38.96 2.29
1680 5836 8.542497 AGCACGTACAGTATATTTTTGAGAAA 57.458 30.769 0.00 0.00 0.00 2.52
1693 5873 3.592059 GAATCCCAAAGCACGTACAGTA 58.408 45.455 0.00 0.00 0.00 2.74
1695 5875 1.393539 CGAATCCCAAAGCACGTACAG 59.606 52.381 0.00 0.00 0.00 2.74
1699 5879 0.320374 TCTCGAATCCCAAAGCACGT 59.680 50.000 0.00 0.00 0.00 4.49
1732 5912 7.508977 AGAAGAGGAAGAAGAAGAAGAAGAAGA 59.491 37.037 0.00 0.00 0.00 2.87
1736 5916 7.670364 AGAAGAAGAGGAAGAAGAAGAAGAAG 58.330 38.462 0.00 0.00 0.00 2.85
1748 5928 7.216494 ACAAGAAGAAGAAGAAGAAGAGGAAG 58.784 38.462 0.00 0.00 0.00 3.46
1749 5929 7.130681 ACAAGAAGAAGAAGAAGAAGAGGAA 57.869 36.000 0.00 0.00 0.00 3.36
1750 5930 6.739331 ACAAGAAGAAGAAGAAGAAGAGGA 57.261 37.500 0.00 0.00 0.00 3.71
1751 5931 7.216494 AGAACAAGAAGAAGAAGAAGAAGAGG 58.784 38.462 0.00 0.00 0.00 3.69
1752 5932 8.661352 AAGAACAAGAAGAAGAAGAAGAAGAG 57.339 34.615 0.00 0.00 0.00 2.85
1753 5933 8.482128 AGAAGAACAAGAAGAAGAAGAAGAAGA 58.518 33.333 0.00 0.00 0.00 2.87
1754 5934 8.661352 AGAAGAACAAGAAGAAGAAGAAGAAG 57.339 34.615 0.00 0.00 0.00 2.85
1755 5935 9.454859 AAAGAAGAACAAGAAGAAGAAGAAGAA 57.545 29.630 0.00 0.00 0.00 2.52
1758 5938 9.667107 TGTAAAGAAGAACAAGAAGAAGAAGAA 57.333 29.630 0.00 0.00 0.00 2.52
1759 5939 9.838339 ATGTAAAGAAGAACAAGAAGAAGAAGA 57.162 29.630 0.00 0.00 0.00 2.87
1761 5941 9.613428 TGATGTAAAGAAGAACAAGAAGAAGAA 57.387 29.630 0.00 0.00 0.00 2.52
1762 5942 9.046296 GTGATGTAAAGAAGAACAAGAAGAAGA 57.954 33.333 0.00 0.00 0.00 2.87
1763 5943 8.286097 GGTGATGTAAAGAAGAACAAGAAGAAG 58.714 37.037 0.00 0.00 0.00 2.85
1764 5944 7.228706 GGGTGATGTAAAGAAGAACAAGAAGAA 59.771 37.037 0.00 0.00 0.00 2.52
1765 5945 6.710744 GGGTGATGTAAAGAAGAACAAGAAGA 59.289 38.462 0.00 0.00 0.00 2.87
1766 5946 6.712547 AGGGTGATGTAAAGAAGAACAAGAAG 59.287 38.462 0.00 0.00 0.00 2.85
1767 5947 6.601332 AGGGTGATGTAAAGAAGAACAAGAA 58.399 36.000 0.00 0.00 0.00 2.52
1768 5948 6.187727 AGGGTGATGTAAAGAAGAACAAGA 57.812 37.500 0.00 0.00 0.00 3.02
1769 5949 6.263168 ACAAGGGTGATGTAAAGAAGAACAAG 59.737 38.462 0.00 0.00 0.00 3.16
1770 5950 6.126409 ACAAGGGTGATGTAAAGAAGAACAA 58.874 36.000 0.00 0.00 0.00 2.83
1771 5951 5.690865 ACAAGGGTGATGTAAAGAAGAACA 58.309 37.500 0.00 0.00 0.00 3.18
1772 5952 6.262273 TCAACAAGGGTGATGTAAAGAAGAAC 59.738 38.462 0.00 0.00 0.00 3.01
1773 5953 6.361433 TCAACAAGGGTGATGTAAAGAAGAA 58.639 36.000 0.00 0.00 0.00 2.52
1774 5954 5.935945 TCAACAAGGGTGATGTAAAGAAGA 58.064 37.500 0.00 0.00 0.00 2.87
1775 5955 5.765182 ACTCAACAAGGGTGATGTAAAGAAG 59.235 40.000 0.00 0.00 0.00 2.85
1776 5956 5.690865 ACTCAACAAGGGTGATGTAAAGAA 58.309 37.500 0.00 0.00 0.00 2.52
1777 5957 5.304686 ACTCAACAAGGGTGATGTAAAGA 57.695 39.130 0.00 0.00 0.00 2.52
1778 5958 7.687941 AATACTCAACAAGGGTGATGTAAAG 57.312 36.000 0.00 0.00 0.00 1.85
1779 5959 9.173021 CATAATACTCAACAAGGGTGATGTAAA 57.827 33.333 0.00 0.00 0.00 2.01
1780 5960 8.544622 TCATAATACTCAACAAGGGTGATGTAA 58.455 33.333 0.00 0.00 0.00 2.41
1781 5961 8.084985 TCATAATACTCAACAAGGGTGATGTA 57.915 34.615 0.00 0.00 0.00 2.29
1782 5962 6.957631 TCATAATACTCAACAAGGGTGATGT 58.042 36.000 0.00 0.00 0.00 3.06
1783 5963 8.455903 AATCATAATACTCAACAAGGGTGATG 57.544 34.615 0.00 0.00 0.00 3.07
1814 5994 9.863845 GCCAAATCCTAGTCTATCTTATACTTC 57.136 37.037 0.00 0.00 0.00 3.01
1815 5995 9.608718 AGCCAAATCCTAGTCTATCTTATACTT 57.391 33.333 0.00 0.00 0.00 2.24
1816 5996 9.608718 AAGCCAAATCCTAGTCTATCTTATACT 57.391 33.333 0.00 0.00 0.00 2.12
1821 6001 9.165057 AGATAAAGCCAAATCCTAGTCTATCTT 57.835 33.333 0.00 0.00 0.00 2.40
1822 6002 8.734593 AGATAAAGCCAAATCCTAGTCTATCT 57.265 34.615 0.00 0.00 0.00 1.98
1823 6003 9.213799 CAAGATAAAGCCAAATCCTAGTCTATC 57.786 37.037 0.00 0.00 0.00 2.08
1824 6004 8.718656 ACAAGATAAAGCCAAATCCTAGTCTAT 58.281 33.333 0.00 0.00 0.00 1.98
1825 6005 8.090788 ACAAGATAAAGCCAAATCCTAGTCTA 57.909 34.615 0.00 0.00 0.00 2.59
1826 6006 6.963322 ACAAGATAAAGCCAAATCCTAGTCT 58.037 36.000 0.00 0.00 0.00 3.24
1827 6007 7.051000 AGACAAGATAAAGCCAAATCCTAGTC 58.949 38.462 0.00 0.00 0.00 2.59
1828 6008 6.963322 AGACAAGATAAAGCCAAATCCTAGT 58.037 36.000 0.00 0.00 0.00 2.57
1829 6009 7.337942 ACAAGACAAGATAAAGCCAAATCCTAG 59.662 37.037 0.00 0.00 0.00 3.02
1830 6010 7.175104 ACAAGACAAGATAAAGCCAAATCCTA 58.825 34.615 0.00 0.00 0.00 2.94
1831 6011 6.012745 ACAAGACAAGATAAAGCCAAATCCT 58.987 36.000 0.00 0.00 0.00 3.24
1832 6012 6.272822 ACAAGACAAGATAAAGCCAAATCC 57.727 37.500 0.00 0.00 0.00 3.01
1833 6013 8.045176 AGTACAAGACAAGATAAAGCCAAATC 57.955 34.615 0.00 0.00 0.00 2.17
1834 6014 8.409358 AAGTACAAGACAAGATAAAGCCAAAT 57.591 30.769 0.00 0.00 0.00 2.32
1835 6015 7.500892 TGAAGTACAAGACAAGATAAAGCCAAA 59.499 33.333 0.00 0.00 0.00 3.28
1836 6016 6.995686 TGAAGTACAAGACAAGATAAAGCCAA 59.004 34.615 0.00 0.00 0.00 4.52
1837 6017 6.530120 TGAAGTACAAGACAAGATAAAGCCA 58.470 36.000 0.00 0.00 0.00 4.75
1838 6018 7.435068 TTGAAGTACAAGACAAGATAAAGCC 57.565 36.000 0.00 0.00 34.20 4.35
1839 6019 9.899226 AATTTGAAGTACAAGACAAGATAAAGC 57.101 29.630 0.00 0.00 39.77 3.51
1842 6022 9.349713 ACCAATTTGAAGTACAAGACAAGATAA 57.650 29.630 0.00 0.00 39.77 1.75
1843 6023 8.918202 ACCAATTTGAAGTACAAGACAAGATA 57.082 30.769 0.00 0.00 39.77 1.98
1844 6024 7.502226 TGACCAATTTGAAGTACAAGACAAGAT 59.498 33.333 0.00 0.00 39.77 2.40
1845 6025 6.826231 TGACCAATTTGAAGTACAAGACAAGA 59.174 34.615 0.00 0.00 39.77 3.02
1846 6026 7.026631 TGACCAATTTGAAGTACAAGACAAG 57.973 36.000 0.00 0.00 39.77 3.16
1847 6027 7.581213 ATGACCAATTTGAAGTACAAGACAA 57.419 32.000 0.00 0.00 39.77 3.18
1848 6028 7.284261 TCAATGACCAATTTGAAGTACAAGACA 59.716 33.333 0.00 0.00 39.77 3.41
1849 6029 7.648142 TCAATGACCAATTTGAAGTACAAGAC 58.352 34.615 0.00 0.00 39.77 3.01
1850 6030 7.815840 TCAATGACCAATTTGAAGTACAAGA 57.184 32.000 0.00 0.00 39.77 3.02
1851 6031 9.132521 GAATCAATGACCAATTTGAAGTACAAG 57.867 33.333 0.00 0.00 39.77 3.16
1852 6032 8.859090 AGAATCAATGACCAATTTGAAGTACAA 58.141 29.630 0.00 0.00 36.65 2.41
1853 6033 8.408043 AGAATCAATGACCAATTTGAAGTACA 57.592 30.769 0.00 0.00 0.00 2.90
1884 6064 8.995027 TTATTGTTTGAGCCTTATGGACATAT 57.005 30.769 0.00 0.00 34.57 1.78
1885 6065 8.815565 TTTATTGTTTGAGCCTTATGGACATA 57.184 30.769 0.00 0.00 34.57 2.29
1886 6066 7.716799 TTTATTGTTTGAGCCTTATGGACAT 57.283 32.000 0.00 0.00 34.57 3.06
1887 6067 7.716799 ATTTATTGTTTGAGCCTTATGGACA 57.283 32.000 0.00 0.00 34.57 4.02
1894 6074 9.822185 GGAATCATTATTTATTGTTTGAGCCTT 57.178 29.630 0.00 0.00 0.00 4.35
1895 6075 8.980596 TGGAATCATTATTTATTGTTTGAGCCT 58.019 29.630 0.00 0.00 0.00 4.58
1896 6076 9.034544 GTGGAATCATTATTTATTGTTTGAGCC 57.965 33.333 0.00 0.00 0.00 4.70
1897 6077 9.034544 GGTGGAATCATTATTTATTGTTTGAGC 57.965 33.333 0.00 0.00 0.00 4.26
1911 6091 9.354673 GGAATAAAGAGATTGGTGGAATCATTA 57.645 33.333 0.00 0.00 42.80 1.90
1912 6092 7.288621 GGGAATAAAGAGATTGGTGGAATCATT 59.711 37.037 0.00 0.00 42.80 2.57
1913 6093 6.779539 GGGAATAAAGAGATTGGTGGAATCAT 59.220 38.462 0.00 0.00 42.80 2.45
1914 6094 6.068853 AGGGAATAAAGAGATTGGTGGAATCA 60.069 38.462 0.00 0.00 42.80 2.57
1915 6095 6.368805 AGGGAATAAAGAGATTGGTGGAATC 58.631 40.000 0.00 0.00 40.92 2.52
1916 6096 6.347061 AGGGAATAAAGAGATTGGTGGAAT 57.653 37.500 0.00 0.00 0.00 3.01
1917 6097 5.796502 AGGGAATAAAGAGATTGGTGGAA 57.203 39.130 0.00 0.00 0.00 3.53
1918 6098 5.796502 AAGGGAATAAAGAGATTGGTGGA 57.203 39.130 0.00 0.00 0.00 4.02
1919 6099 9.067986 GTTATAAGGGAATAAAGAGATTGGTGG 57.932 37.037 0.00 0.00 0.00 4.61
1920 6100 9.627123 TGTTATAAGGGAATAAAGAGATTGGTG 57.373 33.333 0.00 0.00 0.00 4.17
1936 6116 9.449719 GGTTAGATTGATACCATGTTATAAGGG 57.550 37.037 0.00 0.00 32.12 3.95
1937 6117 9.151471 CGGTTAGATTGATACCATGTTATAAGG 57.849 37.037 0.00 0.00 32.12 2.69
1938 6118 9.923143 TCGGTTAGATTGATACCATGTTATAAG 57.077 33.333 0.00 0.00 32.12 1.73
1939 6119 9.701098 GTCGGTTAGATTGATACCATGTTATAA 57.299 33.333 0.00 0.00 32.12 0.98
1940 6120 8.308931 GGTCGGTTAGATTGATACCATGTTATA 58.691 37.037 0.00 0.00 32.12 0.98
1941 6121 7.159372 GGTCGGTTAGATTGATACCATGTTAT 58.841 38.462 0.00 0.00 32.12 1.89
1942 6122 6.463331 GGGTCGGTTAGATTGATACCATGTTA 60.463 42.308 0.00 0.00 32.12 2.41
1943 6123 5.365619 GGTCGGTTAGATTGATACCATGTT 58.634 41.667 0.00 0.00 32.12 2.71
1944 6124 4.202326 GGGTCGGTTAGATTGATACCATGT 60.202 45.833 0.00 0.00 32.12 3.21
1945 6125 4.202315 TGGGTCGGTTAGATTGATACCATG 60.202 45.833 0.00 0.00 32.12 3.66
1946 6126 3.971305 TGGGTCGGTTAGATTGATACCAT 59.029 43.478 0.00 0.00 32.12 3.55
1947 6127 3.376636 TGGGTCGGTTAGATTGATACCA 58.623 45.455 0.00 0.00 32.12 3.25
1948 6128 4.377897 CTTGGGTCGGTTAGATTGATACC 58.622 47.826 0.00 0.00 0.00 2.73
1949 6129 3.808174 GCTTGGGTCGGTTAGATTGATAC 59.192 47.826 0.00 0.00 0.00 2.24
1950 6130 3.181458 GGCTTGGGTCGGTTAGATTGATA 60.181 47.826 0.00 0.00 0.00 2.15
1951 6131 2.421529 GGCTTGGGTCGGTTAGATTGAT 60.422 50.000 0.00 0.00 0.00 2.57
1952 6132 1.065709 GGCTTGGGTCGGTTAGATTGA 60.066 52.381 0.00 0.00 0.00 2.57
1953 6133 1.379527 GGCTTGGGTCGGTTAGATTG 58.620 55.000 0.00 0.00 0.00 2.67
1954 6134 0.107848 CGGCTTGGGTCGGTTAGATT 60.108 55.000 0.00 0.00 36.86 2.40
1955 6135 1.262640 ACGGCTTGGGTCGGTTAGAT 61.263 55.000 0.00 0.00 45.74 1.98
1956 6136 1.880819 GACGGCTTGGGTCGGTTAGA 61.881 60.000 0.00 0.00 45.74 2.10
1957 6137 1.447314 GACGGCTTGGGTCGGTTAG 60.447 63.158 0.00 0.00 45.74 2.34
1958 6138 2.658422 GACGGCTTGGGTCGGTTA 59.342 61.111 0.00 0.00 45.74 2.85
1959 6139 4.324991 GGACGGCTTGGGTCGGTT 62.325 66.667 0.00 0.00 45.74 4.44
2008 6188 4.530857 GGTCATGGAGGCCGACCG 62.531 72.222 10.54 1.66 39.86 4.79
2039 6219 4.719369 CCTAGATACGGCCGGCGC 62.719 72.222 31.76 17.53 0.00 6.53
2040 6220 4.052229 CCCTAGATACGGCCGGCG 62.052 72.222 31.76 18.34 0.00 6.46
2041 6221 2.431805 GAACCCTAGATACGGCCGGC 62.432 65.000 31.76 21.18 0.00 6.13
2042 6222 1.664306 GAACCCTAGATACGGCCGG 59.336 63.158 31.76 11.44 0.00 6.13
2043 6223 1.285023 CGAACCCTAGATACGGCCG 59.715 63.158 26.86 26.86 0.00 6.13
2044 6224 0.313357 GACGAACCCTAGATACGGCC 59.687 60.000 0.00 0.00 0.00 6.13
2045 6225 0.313357 GGACGAACCCTAGATACGGC 59.687 60.000 0.00 0.00 0.00 5.68
2046 6226 0.590195 CGGACGAACCCTAGATACGG 59.410 60.000 0.00 0.00 34.64 4.02
2047 6227 0.040603 GCGGACGAACCCTAGATACG 60.041 60.000 0.00 0.00 34.64 3.06
2048 6228 0.313357 GGCGGACGAACCCTAGATAC 59.687 60.000 0.00 0.00 34.64 2.24
2049 6229 0.106569 TGGCGGACGAACCCTAGATA 60.107 55.000 0.00 0.00 34.64 1.98
2050 6230 0.974010 TTGGCGGACGAACCCTAGAT 60.974 55.000 0.00 0.00 34.64 1.98
2051 6231 0.974010 ATTGGCGGACGAACCCTAGA 60.974 55.000 0.00 0.00 34.64 2.43
2052 6232 0.529992 GATTGGCGGACGAACCCTAG 60.530 60.000 0.00 0.00 34.64 3.02
2053 6233 1.518774 GATTGGCGGACGAACCCTA 59.481 57.895 0.00 0.00 34.64 3.53
2054 6234 2.267961 GATTGGCGGACGAACCCT 59.732 61.111 0.00 0.00 34.64 4.34
2055 6235 3.192922 CGATTGGCGGACGAACCC 61.193 66.667 0.00 0.00 36.03 4.11
2056 6236 2.433664 ACGATTGGCGGACGAACC 60.434 61.111 0.00 0.00 46.49 3.62
2057 6237 2.025418 ACACGATTGGCGGACGAAC 61.025 57.895 0.00 0.00 46.49 3.95
2058 6238 2.024868 CACACGATTGGCGGACGAA 61.025 57.895 0.00 0.00 46.49 3.85
2059 6239 2.431771 CACACGATTGGCGGACGA 60.432 61.111 0.00 0.00 46.49 4.20
2060 6240 3.487202 CCACACGATTGGCGGACG 61.487 66.667 0.00 0.00 46.49 4.79
2061 6241 1.429148 GATCCACACGATTGGCGGAC 61.429 60.000 0.00 0.00 46.49 4.79
2062 6242 1.153449 GATCCACACGATTGGCGGA 60.153 57.895 0.00 0.00 46.49 5.54
2063 6243 1.431488 CTGATCCACACGATTGGCGG 61.431 60.000 0.00 0.00 46.49 6.13
2065 6245 1.131126 CAACTGATCCACACGATTGGC 59.869 52.381 0.00 0.00 36.48 4.52
2066 6246 1.131126 GCAACTGATCCACACGATTGG 59.869 52.381 0.00 0.00 38.10 3.16
2067 6247 1.131126 GGCAACTGATCCACACGATTG 59.869 52.381 0.00 0.00 0.00 2.67
2068 6248 1.453155 GGCAACTGATCCACACGATT 58.547 50.000 0.00 0.00 0.00 3.34
2069 6249 0.392998 GGGCAACTGATCCACACGAT 60.393 55.000 0.00 0.00 0.00 3.73
2070 6250 1.003839 GGGCAACTGATCCACACGA 60.004 57.895 0.00 0.00 0.00 4.35
2071 6251 0.249120 TAGGGCAACTGATCCACACG 59.751 55.000 0.00 0.00 0.00 4.49
2072 6252 1.555075 TCTAGGGCAACTGATCCACAC 59.445 52.381 0.00 0.00 0.00 3.82
2073 6253 1.833630 CTCTAGGGCAACTGATCCACA 59.166 52.381 0.00 0.00 0.00 4.17
2074 6254 2.102252 CTCTCTAGGGCAACTGATCCAC 59.898 54.545 0.00 0.00 0.00 4.02
2075 6255 2.292521 ACTCTCTAGGGCAACTGATCCA 60.293 50.000 0.00 0.00 0.00 3.41
2076 6256 2.364002 GACTCTCTAGGGCAACTGATCC 59.636 54.545 0.00 0.00 0.00 3.36
2077 6257 3.295973 AGACTCTCTAGGGCAACTGATC 58.704 50.000 0.00 0.00 0.00 2.92
2078 6258 3.396685 AGACTCTCTAGGGCAACTGAT 57.603 47.619 0.00 0.00 0.00 2.90
2079 6259 2.909504 AGACTCTCTAGGGCAACTGA 57.090 50.000 0.00 0.00 0.00 3.41
2080 6260 3.971245 AAAGACTCTCTAGGGCAACTG 57.029 47.619 0.00 0.00 0.00 3.16
2081 6261 3.262151 GGAAAAGACTCTCTAGGGCAACT 59.738 47.826 0.00 0.00 0.00 3.16
2082 6262 3.601435 GGAAAAGACTCTCTAGGGCAAC 58.399 50.000 0.00 0.00 0.00 4.17
2083 6263 2.572104 GGGAAAAGACTCTCTAGGGCAA 59.428 50.000 0.00 0.00 0.00 4.52
2084 6264 2.188817 GGGAAAAGACTCTCTAGGGCA 58.811 52.381 0.00 0.00 0.00 5.36
2085 6265 1.487142 GGGGAAAAGACTCTCTAGGGC 59.513 57.143 0.00 0.00 0.00 5.19
2086 6266 1.757699 CGGGGAAAAGACTCTCTAGGG 59.242 57.143 0.00 0.00 0.00 3.53
2087 6267 2.736347 TCGGGGAAAAGACTCTCTAGG 58.264 52.381 0.00 0.00 0.00 3.02
2088 6268 3.319689 GGATCGGGGAAAAGACTCTCTAG 59.680 52.174 0.00 0.00 0.00 2.43
2089 6269 3.052793 AGGATCGGGGAAAAGACTCTCTA 60.053 47.826 0.00 0.00 0.00 2.43
2090 6270 2.112190 GGATCGGGGAAAAGACTCTCT 58.888 52.381 0.00 0.00 0.00 3.10
2091 6271 2.112190 AGGATCGGGGAAAAGACTCTC 58.888 52.381 0.00 0.00 0.00 3.20
2092 6272 2.255770 AGGATCGGGGAAAAGACTCT 57.744 50.000 0.00 0.00 0.00 3.24
2093 6273 3.010420 CAAAGGATCGGGGAAAAGACTC 58.990 50.000 0.00 0.00 0.00 3.36
2094 6274 2.642807 TCAAAGGATCGGGGAAAAGACT 59.357 45.455 0.00 0.00 0.00 3.24
2095 6275 3.067684 TCAAAGGATCGGGGAAAAGAC 57.932 47.619 0.00 0.00 0.00 3.01
2096 6276 3.886123 GATCAAAGGATCGGGGAAAAGA 58.114 45.455 0.00 0.00 40.50 2.52
2106 6286 9.465166 AGAGAGAAAACTCCGGATCAAAGGATC 62.465 44.444 3.57 0.00 41.76 3.36
2107 6287 4.226168 AGAGAAAACTCCGGATCAAAGGAT 59.774 41.667 3.57 0.00 35.75 3.24
2108 6288 3.583086 AGAGAAAACTCCGGATCAAAGGA 59.417 43.478 3.57 0.00 34.93 3.36
2109 6289 3.935828 GAGAGAAAACTCCGGATCAAAGG 59.064 47.826 3.57 0.00 0.00 3.11
2110 6290 4.826556 AGAGAGAAAACTCCGGATCAAAG 58.173 43.478 3.57 0.00 37.60 2.77
2111 6291 4.528596 AGAGAGAGAAAACTCCGGATCAAA 59.471 41.667 3.57 0.00 37.60 2.69
2112 6292 4.090090 AGAGAGAGAAAACTCCGGATCAA 58.910 43.478 3.57 0.00 37.60 2.57
2113 6293 3.697045 GAGAGAGAGAAAACTCCGGATCA 59.303 47.826 3.57 0.00 37.60 2.92
2114 6294 3.242936 CGAGAGAGAGAAAACTCCGGATC 60.243 52.174 3.57 0.00 37.60 3.36
2115 6295 2.685897 CGAGAGAGAGAAAACTCCGGAT 59.314 50.000 3.57 0.00 37.60 4.18
2116 6296 2.085320 CGAGAGAGAGAAAACTCCGGA 58.915 52.381 2.93 2.93 37.60 5.14
2117 6297 1.468395 GCGAGAGAGAGAAAACTCCGG 60.468 57.143 0.00 0.00 37.60 5.14
2118 6298 1.468395 GGCGAGAGAGAGAAAACTCCG 60.468 57.143 0.00 0.00 37.60 4.63
2119 6299 1.468395 CGGCGAGAGAGAGAAAACTCC 60.468 57.143 0.00 0.00 37.60 3.85
2120 6300 1.468395 CCGGCGAGAGAGAGAAAACTC 60.468 57.143 9.30 0.00 37.19 3.01
2121 6301 0.528470 CCGGCGAGAGAGAGAAAACT 59.472 55.000 9.30 0.00 0.00 2.66
2122 6302 0.244178 ACCGGCGAGAGAGAGAAAAC 59.756 55.000 9.30 0.00 0.00 2.43
2123 6303 0.526662 GACCGGCGAGAGAGAGAAAA 59.473 55.000 9.30 0.00 0.00 2.29
2124 6304 1.645704 CGACCGGCGAGAGAGAGAAA 61.646 60.000 9.30 0.00 44.57 2.52
2125 6305 2.107292 CGACCGGCGAGAGAGAGAA 61.107 63.158 9.30 0.00 44.57 2.87
2126 6306 2.511829 CGACCGGCGAGAGAGAGA 60.512 66.667 9.30 0.00 44.57 3.10
2127 6307 1.924320 AAACGACCGGCGAGAGAGAG 61.924 60.000 22.10 0.00 44.57 3.20
2128 6308 1.521450 AAAACGACCGGCGAGAGAGA 61.521 55.000 22.10 0.00 44.57 3.10
2129 6309 1.080705 AAAACGACCGGCGAGAGAG 60.081 57.895 22.10 0.00 44.57 3.20
2130 6310 1.372499 CAAAACGACCGGCGAGAGA 60.372 57.895 22.10 0.00 44.57 3.10
2131 6311 0.736325 ATCAAAACGACCGGCGAGAG 60.736 55.000 22.10 0.45 44.57 3.20
2132 6312 0.734942 GATCAAAACGACCGGCGAGA 60.735 55.000 22.10 14.33 44.57 4.04
2133 6313 1.011968 TGATCAAAACGACCGGCGAG 61.012 55.000 22.10 7.51 44.57 5.03
2134 6314 1.005984 TGATCAAAACGACCGGCGA 60.006 52.632 22.10 2.72 44.57 5.54
2136 6316 1.134694 GCTGATCAAAACGACCGGC 59.865 57.895 0.00 0.00 0.00 6.13
2137 6317 1.289109 ACGCTGATCAAAACGACCGG 61.289 55.000 16.59 0.00 0.00 5.28
2138 6318 0.511221 AACGCTGATCAAAACGACCG 59.489 50.000 16.59 5.25 0.00 4.79
2139 6319 2.681152 AAACGCTGATCAAAACGACC 57.319 45.000 16.59 0.00 0.00 4.79
2140 6320 4.385244 AGTAAACGCTGATCAAAACGAC 57.615 40.909 16.59 6.94 0.00 4.34
2141 6321 5.412526 AAAGTAAACGCTGATCAAAACGA 57.587 34.783 16.59 0.00 0.00 3.85
2142 6322 6.336392 CAAAAAGTAAACGCTGATCAAAACG 58.664 36.000 10.03 10.03 0.00 3.60
2143 6323 6.254804 ACCAAAAAGTAAACGCTGATCAAAAC 59.745 34.615 0.00 0.00 0.00 2.43
2144 6324 6.334202 ACCAAAAAGTAAACGCTGATCAAAA 58.666 32.000 0.00 0.00 0.00 2.44
2145 6325 5.897050 ACCAAAAAGTAAACGCTGATCAAA 58.103 33.333 0.00 0.00 0.00 2.69
2146 6326 5.508200 ACCAAAAAGTAAACGCTGATCAA 57.492 34.783 0.00 0.00 0.00 2.57
2147 6327 5.508200 AACCAAAAAGTAAACGCTGATCA 57.492 34.783 0.00 0.00 0.00 2.92
2148 6328 6.074516 GGAAAACCAAAAAGTAAACGCTGATC 60.075 38.462 0.00 0.00 0.00 2.92
2149 6329 5.751509 GGAAAACCAAAAAGTAAACGCTGAT 59.248 36.000 0.00 0.00 0.00 2.90
2150 6330 5.103687 GGAAAACCAAAAAGTAAACGCTGA 58.896 37.500 0.00 0.00 0.00 4.26
2151 6331 4.865365 TGGAAAACCAAAAAGTAAACGCTG 59.135 37.500 0.00 0.00 0.00 5.18
2152 6332 5.074584 TGGAAAACCAAAAAGTAAACGCT 57.925 34.783 0.00 0.00 0.00 5.07
2153 6333 5.781452 TTGGAAAACCAAAAAGTAAACGC 57.219 34.783 0.00 0.00 0.00 4.84
2154 6334 7.764695 AGATTGGAAAACCAAAAAGTAAACG 57.235 32.000 5.79 0.00 33.20 3.60
2161 6341 9.898152 ACAAATCTTAGATTGGAAAACCAAAAA 57.102 25.926 15.60 1.49 33.20 1.94
2162 6342 9.898152 AACAAATCTTAGATTGGAAAACCAAAA 57.102 25.926 15.60 0.00 33.20 2.44
2163 6343 9.898152 AAACAAATCTTAGATTGGAAAACCAAA 57.102 25.926 15.60 0.00 33.20 3.28
2164 6344 9.323985 CAAACAAATCTTAGATTGGAAAACCAA 57.676 29.630 15.60 4.17 0.00 3.67
2165 6345 7.440856 GCAAACAAATCTTAGATTGGAAAACCA 59.559 33.333 15.60 0.00 0.00 3.67
2166 6346 7.359181 CGCAAACAAATCTTAGATTGGAAAACC 60.359 37.037 15.60 0.58 0.00 3.27
2167 6347 7.169140 ACGCAAACAAATCTTAGATTGGAAAAC 59.831 33.333 15.60 2.67 0.00 2.43
2168 6348 7.206687 ACGCAAACAAATCTTAGATTGGAAAA 58.793 30.769 15.60 0.00 0.00 2.29
2169 6349 6.744112 ACGCAAACAAATCTTAGATTGGAAA 58.256 32.000 15.60 0.00 0.00 3.13
2170 6350 6.325919 ACGCAAACAAATCTTAGATTGGAA 57.674 33.333 15.60 0.00 0.00 3.53
2171 6351 5.390461 CGACGCAAACAAATCTTAGATTGGA 60.390 40.000 15.60 0.00 0.00 3.53
2172 6352 4.788100 CGACGCAAACAAATCTTAGATTGG 59.212 41.667 8.34 8.02 0.00 3.16
2173 6353 4.260656 GCGACGCAAACAAATCTTAGATTG 59.739 41.667 16.42 5.69 0.00 2.67
2174 6354 4.403453 GCGACGCAAACAAATCTTAGATT 58.597 39.130 16.42 0.99 0.00 2.40
2175 6355 3.181510 GGCGACGCAAACAAATCTTAGAT 60.182 43.478 23.09 0.00 0.00 1.98
2176 6356 2.158841 GGCGACGCAAACAAATCTTAGA 59.841 45.455 23.09 0.00 0.00 2.10
2177 6357 2.505866 GGCGACGCAAACAAATCTTAG 58.494 47.619 23.09 0.00 0.00 2.18
2178 6358 1.198178 GGGCGACGCAAACAAATCTTA 59.802 47.619 23.09 0.00 0.00 2.10
2179 6359 0.039527 GGGCGACGCAAACAAATCTT 60.040 50.000 23.09 0.00 0.00 2.40
2180 6360 1.579429 GGGCGACGCAAACAAATCT 59.421 52.632 23.09 0.00 0.00 2.40
2181 6361 1.795962 CGGGCGACGCAAACAAATC 60.796 57.895 23.09 0.62 34.82 2.17
2182 6362 2.254051 CGGGCGACGCAAACAAAT 59.746 55.556 23.09 0.00 34.82 2.32
2183 6363 2.895865 TCGGGCGACGCAAACAAA 60.896 55.556 23.09 0.00 43.86 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.