Multiple sequence alignment - TraesCS6D01G072400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G072400 chr6D 100.000 5498 0 0 1 5498 36813954 36819451 0.000000e+00 10154.0
1 TraesCS6D01G072400 chr6D 86.299 562 50 16 1 547 384213171 384213720 2.210000e-163 586.0
2 TraesCS6D01G072400 chr6D 86.146 563 52 15 1 547 219785368 219784816 7.940000e-163 584.0
3 TraesCS6D01G072400 chr6D 82.779 691 77 22 1633 2316 290072296 290072951 3.690000e-161 579.0
4 TraesCS6D01G072400 chr6D 86.559 558 34 17 1 545 352856342 352856871 1.330000e-160 577.0
5 TraesCS6D01G072400 chr6D 82.370 692 79 23 1633 2316 28344193 28343537 3.720000e-156 562.0
6 TraesCS6D01G072400 chr6D 85.199 554 37 21 1 547 153862171 153862686 1.360000e-145 527.0
7 TraesCS6D01G072400 chr6A 94.868 2650 94 21 2877 5498 48554769 48557404 0.000000e+00 4102.0
8 TraesCS6D01G072400 chr6A 94.951 1030 43 6 1853 2877 48553664 48554689 0.000000e+00 1605.0
9 TraesCS6D01G072400 chr6A 94.347 513 25 3 545 1054 48551987 48552498 0.000000e+00 784.0
10 TraesCS6D01G072400 chr6A 83.623 690 84 17 1633 2316 572390160 572390826 6.050000e-174 621.0
11 TraesCS6D01G072400 chr6A 87.387 555 29 7 1380 1897 48553114 48553664 2.830000e-167 599.0
12 TraesCS6D01G072400 chr6B 95.471 1943 70 8 2877 4804 85784642 85786581 0.000000e+00 3085.0
13 TraesCS6D01G072400 chr6B 91.441 1624 86 24 1299 2877 85782924 85784539 0.000000e+00 2180.0
14 TraesCS6D01G072400 chr6B 88.619 659 48 13 545 1186 85782214 85782862 0.000000e+00 776.0
15 TraesCS6D01G072400 chr6B 94.444 504 17 2 5006 5498 85787338 85787841 0.000000e+00 765.0
16 TraesCS6D01G072400 chr6B 95.918 49 2 0 4968 5016 85787018 85787066 4.570000e-11 80.5
17 TraesCS6D01G072400 chr7D 88.948 561 38 16 1 547 520336670 520336120 0.000000e+00 671.0
18 TraesCS6D01G072400 chr7D 84.783 690 77 17 1633 2316 412484224 412483557 0.000000e+00 667.0
19 TraesCS6D01G072400 chr3D 84.226 691 78 19 1633 2316 196527889 196527223 1.290000e-180 643.0
20 TraesCS6D01G072400 chr3D 87.097 558 43 15 1 545 472200382 472199841 6.090000e-169 604.0
21 TraesCS6D01G072400 chr3D 83.005 559 43 21 1 547 475301315 475300797 5.020000e-125 459.0
22 TraesCS6D01G072400 chr3D 93.651 189 11 1 1633 1821 540180876 540181063 1.170000e-71 281.0
23 TraesCS6D01G072400 chr5D 88.566 516 39 11 1 505 4058202 4057696 4.710000e-170 608.0
24 TraesCS6D01G072400 chr5D 88.672 512 39 8 49 547 291918830 291919335 1.690000e-169 606.0
25 TraesCS6D01G072400 chr5D 84.615 559 56 15 1 545 442670520 442669978 3.770000e-146 529.0
26 TraesCS6D01G072400 chr2D 86.738 558 46 12 1 545 165005533 165006075 3.670000e-166 595.0
27 TraesCS6D01G072400 chr2D 83.848 551 57 19 1 545 291845290 291845814 3.830000e-136 496.0
28 TraesCS6D01G072400 chr4D 84.167 600 70 13 1633 2227 505743119 505742540 4.810000e-155 558.0
29 TraesCS6D01G072400 chr1D 85.579 527 44 16 1 505 437450290 437449774 1.750000e-144 523.0
30 TraesCS6D01G072400 chr7A 83.741 572 59 14 1 547 91671596 91672158 1.370000e-140 510.0
31 TraesCS6D01G072400 chr7A 87.204 422 37 8 140 548 710851165 710850748 1.080000e-126 464.0
32 TraesCS6D01G072400 chr7A 86.432 398 44 5 134 523 539506943 539507338 1.420000e-115 427.0
33 TraesCS6D01G072400 chr7A 89.831 59 6 0 1 59 140667908 140667966 5.910000e-10 76.8
34 TraesCS6D01G072400 chr2A 83.932 529 65 11 1 521 757989852 757990368 6.400000e-134 488.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G072400 chr6D 36813954 36819451 5497 False 10154.0 10154 100.00000 1 5498 1 chr6D.!!$F1 5497
1 TraesCS6D01G072400 chr6D 384213171 384213720 549 False 586.0 586 86.29900 1 547 1 chr6D.!!$F5 546
2 TraesCS6D01G072400 chr6D 219784816 219785368 552 True 584.0 584 86.14600 1 547 1 chr6D.!!$R2 546
3 TraesCS6D01G072400 chr6D 290072296 290072951 655 False 579.0 579 82.77900 1633 2316 1 chr6D.!!$F3 683
4 TraesCS6D01G072400 chr6D 352856342 352856871 529 False 577.0 577 86.55900 1 545 1 chr6D.!!$F4 544
5 TraesCS6D01G072400 chr6D 28343537 28344193 656 True 562.0 562 82.37000 1633 2316 1 chr6D.!!$R1 683
6 TraesCS6D01G072400 chr6D 153862171 153862686 515 False 527.0 527 85.19900 1 547 1 chr6D.!!$F2 546
7 TraesCS6D01G072400 chr6A 48551987 48557404 5417 False 1772.5 4102 92.88825 545 5498 4 chr6A.!!$F2 4953
8 TraesCS6D01G072400 chr6A 572390160 572390826 666 False 621.0 621 83.62300 1633 2316 1 chr6A.!!$F1 683
9 TraesCS6D01G072400 chr6B 85782214 85787841 5627 False 1377.3 3085 93.17860 545 5498 5 chr6B.!!$F1 4953
10 TraesCS6D01G072400 chr7D 520336120 520336670 550 True 671.0 671 88.94800 1 547 1 chr7D.!!$R2 546
11 TraesCS6D01G072400 chr7D 412483557 412484224 667 True 667.0 667 84.78300 1633 2316 1 chr7D.!!$R1 683
12 TraesCS6D01G072400 chr3D 196527223 196527889 666 True 643.0 643 84.22600 1633 2316 1 chr3D.!!$R1 683
13 TraesCS6D01G072400 chr3D 472199841 472200382 541 True 604.0 604 87.09700 1 545 1 chr3D.!!$R2 544
14 TraesCS6D01G072400 chr3D 475300797 475301315 518 True 459.0 459 83.00500 1 547 1 chr3D.!!$R3 546
15 TraesCS6D01G072400 chr5D 4057696 4058202 506 True 608.0 608 88.56600 1 505 1 chr5D.!!$R1 504
16 TraesCS6D01G072400 chr5D 291918830 291919335 505 False 606.0 606 88.67200 49 547 1 chr5D.!!$F1 498
17 TraesCS6D01G072400 chr5D 442669978 442670520 542 True 529.0 529 84.61500 1 545 1 chr5D.!!$R2 544
18 TraesCS6D01G072400 chr2D 165005533 165006075 542 False 595.0 595 86.73800 1 545 1 chr2D.!!$F1 544
19 TraesCS6D01G072400 chr2D 291845290 291845814 524 False 496.0 496 83.84800 1 545 1 chr2D.!!$F2 544
20 TraesCS6D01G072400 chr4D 505742540 505743119 579 True 558.0 558 84.16700 1633 2227 1 chr4D.!!$R1 594
21 TraesCS6D01G072400 chr1D 437449774 437450290 516 True 523.0 523 85.57900 1 505 1 chr1D.!!$R1 504
22 TraesCS6D01G072400 chr7A 91671596 91672158 562 False 510.0 510 83.74100 1 547 1 chr7A.!!$F1 546
23 TraesCS6D01G072400 chr2A 757989852 757990368 516 False 488.0 488 83.93200 1 521 1 chr2A.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 561 0.033366 GACTGGGCCAATTTTTGCGT 59.967 50.000 8.04 0.0 0.00 5.24 F
1192 1552 0.036765 TCGATTCGGGGTTCTGGTTG 60.037 55.000 6.18 0.0 0.00 3.77 F
1287 1648 0.038166 TAGGTTTGGCTGCTTCCTGG 59.962 55.000 0.00 0.0 0.00 4.45 F
2178 2699 0.038744 ATGCAACTGCCTTAGCTGGT 59.961 50.000 0.00 0.0 41.92 4.00 F
2844 3377 1.072648 CCAACGAAACTTACCCTGGGA 59.927 52.381 22.23 0.0 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1394 1825 0.804544 TTAGGAAATCGCGACCGCAG 60.805 55.0 12.93 7.44 42.06 5.18 R
2415 2943 1.337118 ATCCACCAAATGCCAAACGT 58.663 45.0 0.00 0.00 0.00 3.99 R
2934 3656 5.414454 AGTTCTTACACACAAAACAGCTTCA 59.586 36.0 0.00 0.00 0.00 3.02 R
3739 4461 0.469494 TCACTGCTGAGCACAAGGAA 59.531 50.0 1.40 0.00 33.79 3.36 R
4751 5488 0.377203 GGTAATGCTTGCGTGCCTAC 59.623 55.0 0.00 1.25 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 113 4.206244 AGAGGGGAGTGTTGCTATCTAT 57.794 45.455 0.00 0.00 0.00 1.98
175 198 2.779506 GCCTTTTATAGCCATAGCGGT 58.220 47.619 0.00 0.00 46.67 5.68
307 359 1.330655 ACAGGAACCGAGGCGATGAT 61.331 55.000 0.00 0.00 0.00 2.45
374 436 3.431725 CCAAAACCGCTCGCCTCC 61.432 66.667 0.00 0.00 0.00 4.30
487 559 1.291184 GCGACTGGGCCAATTTTTGC 61.291 55.000 8.04 4.11 0.00 3.68
489 561 0.033366 GACTGGGCCAATTTTTGCGT 59.967 50.000 8.04 0.00 0.00 5.24
523 595 0.321996 AAACGTCTGAGAAGGGCCTC 59.678 55.000 6.46 0.00 0.00 4.70
524 596 0.832135 AACGTCTGAGAAGGGCCTCA 60.832 55.000 6.46 0.00 40.57 3.86
525 597 1.216710 CGTCTGAGAAGGGCCTCAC 59.783 63.158 6.46 4.29 38.18 3.51
654 734 3.625764 TCAAAGTTTTGGAAGTCAGGTCG 59.374 43.478 4.89 0.00 38.66 4.79
700 783 4.729227 TCCAAACAGGTCCAAAAAGAAC 57.271 40.909 0.00 0.00 39.02 3.01
711 794 9.546428 CAGGTCCAAAAAGAACAATAAAAGAAT 57.454 29.630 0.00 0.00 0.00 2.40
716 799 6.466308 AAAAGAACAATAAAAGAATGGCGC 57.534 33.333 0.00 0.00 0.00 6.53
799 882 4.348495 TGGAGGGGGTGGAGTCCC 62.348 72.222 6.74 0.00 46.31 4.46
1079 1165 1.885163 CTCGCCAACGTAACCTCCCT 61.885 60.000 0.00 0.00 41.18 4.20
1083 1178 0.538584 CCAACGTAACCTCCCTACCC 59.461 60.000 0.00 0.00 0.00 3.69
1102 1197 1.107114 CCGAGCAGCTTCTTCTCCTA 58.893 55.000 0.00 0.00 0.00 2.94
1103 1198 1.202359 CCGAGCAGCTTCTTCTCCTAC 60.202 57.143 0.00 0.00 0.00 3.18
1104 1199 1.748493 CGAGCAGCTTCTTCTCCTACT 59.252 52.381 0.00 0.00 0.00 2.57
1120 1480 1.008361 TACTTGTTCCGTTACGCGCC 61.008 55.000 5.73 0.00 39.71 6.53
1123 1483 3.184003 GTTCCGTTACGCGCCTCC 61.184 66.667 5.73 0.00 39.71 4.30
1137 1497 2.685380 CTCCCTTCCCGCTGTCCT 60.685 66.667 0.00 0.00 0.00 3.85
1147 1507 4.200283 GCTGTCCTCGGGAGCTCG 62.200 72.222 7.83 0.00 29.39 5.03
1148 1508 2.752238 CTGTCCTCGGGAGCTCGT 60.752 66.667 7.83 0.00 29.39 4.18
1164 1524 1.105167 TCGTGATCCCTAATCCGCGT 61.105 55.000 4.92 0.00 35.00 6.01
1179 1539 2.591715 CGTGGGGCCCATCGATTC 60.592 66.667 31.48 13.95 35.28 2.52
1186 1546 1.892391 GCCCATCGATTCGGGGTTC 60.892 63.158 19.61 2.80 44.07 3.62
1187 1547 1.830145 CCCATCGATTCGGGGTTCT 59.170 57.895 12.16 0.00 38.95 3.01
1188 1548 0.532862 CCCATCGATTCGGGGTTCTG 60.533 60.000 12.16 0.00 38.95 3.02
1189 1549 0.532862 CCATCGATTCGGGGTTCTGG 60.533 60.000 6.18 1.15 0.00 3.86
1190 1550 0.178068 CATCGATTCGGGGTTCTGGT 59.822 55.000 6.18 0.00 0.00 4.00
1191 1551 0.909623 ATCGATTCGGGGTTCTGGTT 59.090 50.000 6.18 0.00 0.00 3.67
1192 1552 0.036765 TCGATTCGGGGTTCTGGTTG 60.037 55.000 6.18 0.00 0.00 3.77
1193 1553 0.321298 CGATTCGGGGTTCTGGTTGT 60.321 55.000 0.00 0.00 0.00 3.32
1194 1554 1.165270 GATTCGGGGTTCTGGTTGTG 58.835 55.000 0.00 0.00 0.00 3.33
1195 1555 0.251165 ATTCGGGGTTCTGGTTGTGG 60.251 55.000 0.00 0.00 0.00 4.17
1196 1556 1.637724 TTCGGGGTTCTGGTTGTGGT 61.638 55.000 0.00 0.00 0.00 4.16
1197 1557 1.152839 CGGGGTTCTGGTTGTGGTT 60.153 57.895 0.00 0.00 0.00 3.67
1198 1558 1.452145 CGGGGTTCTGGTTGTGGTTG 61.452 60.000 0.00 0.00 0.00 3.77
1199 1559 1.112916 GGGGTTCTGGTTGTGGTTGG 61.113 60.000 0.00 0.00 0.00 3.77
1200 1560 1.112916 GGGTTCTGGTTGTGGTTGGG 61.113 60.000 0.00 0.00 0.00 4.12
1201 1561 1.112916 GGTTCTGGTTGTGGTTGGGG 61.113 60.000 0.00 0.00 0.00 4.96
1202 1562 1.456705 TTCTGGTTGTGGTTGGGGC 60.457 57.895 0.00 0.00 0.00 5.80
1203 1563 2.123511 CTGGTTGTGGTTGGGGCA 60.124 61.111 0.00 0.00 0.00 5.36
1204 1564 2.123511 TGGTTGTGGTTGGGGCAG 60.124 61.111 0.00 0.00 0.00 4.85
1205 1565 2.917227 GGTTGTGGTTGGGGCAGG 60.917 66.667 0.00 0.00 0.00 4.85
1206 1566 2.123468 GTTGTGGTTGGGGCAGGT 60.123 61.111 0.00 0.00 0.00 4.00
1221 1581 2.159517 GGCAGGTTCAATCGTGTGATTC 60.160 50.000 0.00 0.00 42.94 2.52
1228 1589 3.186909 TCAATCGTGTGATTCGGTGATC 58.813 45.455 0.00 0.00 42.94 2.92
1232 1593 1.405526 CGTGTGATTCGGTGATCCCTT 60.406 52.381 0.00 0.00 0.00 3.95
1233 1594 2.159156 CGTGTGATTCGGTGATCCCTTA 60.159 50.000 0.00 0.00 0.00 2.69
1243 1604 0.642156 TGATCCCTTAGGGCTCCTCA 59.358 55.000 17.49 11.89 43.94 3.86
1265 1626 1.799916 GGGGTTTTGCGCGAATTCG 60.800 57.895 23.34 23.34 43.27 3.34
1275 1636 2.139336 CGCGAATTCGTGTAGGTTTG 57.861 50.000 28.61 6.14 44.02 2.93
1276 1637 1.201877 CGCGAATTCGTGTAGGTTTGG 60.202 52.381 28.61 0.00 44.02 3.28
1277 1638 1.465187 GCGAATTCGTGTAGGTTTGGC 60.465 52.381 27.24 3.91 42.22 4.52
1278 1639 2.073816 CGAATTCGTGTAGGTTTGGCT 58.926 47.619 19.67 0.00 34.11 4.75
1279 1640 2.159707 CGAATTCGTGTAGGTTTGGCTG 60.160 50.000 19.67 0.00 34.11 4.85
1280 1641 1.165270 ATTCGTGTAGGTTTGGCTGC 58.835 50.000 0.00 0.00 0.00 5.25
1281 1642 0.107831 TTCGTGTAGGTTTGGCTGCT 59.892 50.000 0.00 0.00 0.00 4.24
1282 1643 0.107831 TCGTGTAGGTTTGGCTGCTT 59.892 50.000 0.00 0.00 0.00 3.91
1283 1644 0.517316 CGTGTAGGTTTGGCTGCTTC 59.483 55.000 0.00 0.00 0.00 3.86
1284 1645 0.881796 GTGTAGGTTTGGCTGCTTCC 59.118 55.000 0.00 0.00 0.00 3.46
1285 1646 0.771127 TGTAGGTTTGGCTGCTTCCT 59.229 50.000 0.00 5.29 0.00 3.36
1286 1647 1.168714 GTAGGTTTGGCTGCTTCCTG 58.831 55.000 0.00 0.00 0.00 3.86
1287 1648 0.038166 TAGGTTTGGCTGCTTCCTGG 59.962 55.000 0.00 0.00 0.00 4.45
1288 1649 1.228552 GGTTTGGCTGCTTCCTGGA 60.229 57.895 0.00 0.00 0.00 3.86
1289 1650 0.827507 GGTTTGGCTGCTTCCTGGAA 60.828 55.000 9.14 9.14 0.00 3.53
1290 1651 1.260544 GTTTGGCTGCTTCCTGGAAT 58.739 50.000 10.03 0.00 0.00 3.01
1291 1652 1.203287 GTTTGGCTGCTTCCTGGAATC 59.797 52.381 10.03 6.45 0.00 2.52
1292 1653 0.700564 TTGGCTGCTTCCTGGAATCT 59.299 50.000 10.03 0.00 0.00 2.40
1293 1654 0.254178 TGGCTGCTTCCTGGAATCTC 59.746 55.000 10.03 3.31 0.00 2.75
1294 1655 0.465278 GGCTGCTTCCTGGAATCTCC 60.465 60.000 10.03 7.82 36.96 3.71
1295 1656 0.545646 GCTGCTTCCTGGAATCTCCT 59.454 55.000 10.03 0.00 37.46 3.69
1296 1657 1.746516 GCTGCTTCCTGGAATCTCCTG 60.747 57.143 10.03 0.00 37.46 3.86
1315 1676 2.109126 GCTTTGGCAGGCCGTAGAG 61.109 63.158 13.64 6.66 39.42 2.43
1317 1678 1.899437 CTTTGGCAGGCCGTAGAGGA 61.899 60.000 5.74 0.00 45.00 3.71
1318 1679 1.271840 TTTGGCAGGCCGTAGAGGAT 61.272 55.000 5.74 0.00 45.00 3.24
1319 1680 1.271840 TTGGCAGGCCGTAGAGGATT 61.272 55.000 5.74 0.00 45.00 3.01
1363 1725 4.433186 TTACGAAATTCCATGCTGGTTG 57.567 40.909 0.00 0.00 39.03 3.77
1391 1822 2.508526 GTGCCATGGGTTAGGATCATC 58.491 52.381 15.13 0.00 0.00 2.92
1394 1825 2.887152 GCCATGGGTTAGGATCATCAAC 59.113 50.000 15.13 0.00 0.00 3.18
1410 1841 2.388232 AACTGCGGTCGCGATTTCC 61.388 57.895 14.06 8.34 45.51 3.13
1413 1844 0.804544 CTGCGGTCGCGATTTCCTAA 60.805 55.000 14.06 0.00 45.51 2.69
1452 1883 3.124560 GGAACGAGTAGCTAGAAATGGC 58.875 50.000 0.00 0.00 0.00 4.40
1484 1915 8.284945 TGCTTATGTTTGCTTCATTCTAGAAT 57.715 30.769 12.37 12.37 0.00 2.40
1523 1956 1.966451 CAACGACTTGCAGGGGGTC 60.966 63.158 0.00 1.30 0.00 4.46
1568 2001 0.830648 CTAACTCCGAGATTGCCCCA 59.169 55.000 1.33 0.00 0.00 4.96
1602 2041 5.418840 ACTGCTTCAATAGGGGTAACATTTG 59.581 40.000 0.00 0.00 39.74 2.32
1605 2044 5.186992 GCTTCAATAGGGGTAACATTTGGTT 59.813 40.000 0.00 0.00 43.62 3.67
1607 2046 5.893500 TCAATAGGGGTAACATTTGGTTCA 58.106 37.500 0.00 0.00 40.96 3.18
1608 2047 5.949354 TCAATAGGGGTAACATTTGGTTCAG 59.051 40.000 0.00 0.00 40.96 3.02
1675 2143 5.619533 CGAGAAGTACCTAGTTGAAGTGTCC 60.620 48.000 0.00 0.00 0.00 4.02
1767 2240 5.484715 GGGTGTGCAGATAACAGTTAACTA 58.515 41.667 8.04 0.00 0.00 2.24
1809 2282 4.932200 CAGTTTGGACTGCTAGAAAGTAGG 59.068 45.833 0.00 0.00 46.08 3.18
1860 2377 8.730948 AGAGGTATAAGGTTGTATAGGTACTGA 58.269 37.037 0.00 0.00 41.52 3.41
1883 2400 4.460382 ACATGGTAGGCTCAATTGTGAAAG 59.540 41.667 11.59 0.00 31.88 2.62
1892 2409 4.687483 GCTCAATTGTGAAAGTTTGGATGG 59.313 41.667 11.59 0.00 31.88 3.51
1926 2443 1.119684 GTGGTGCCCCTTTGTTCTTT 58.880 50.000 0.00 0.00 0.00 2.52
1934 2451 3.494924 GCCCCTTTGTTCTTTCTGCATTT 60.495 43.478 0.00 0.00 0.00 2.32
1986 2504 6.624423 AGATGAAACCATGAGCATTTTGTAC 58.376 36.000 0.00 0.00 0.00 2.90
2178 2699 0.038744 ATGCAACTGCCTTAGCTGGT 59.961 50.000 0.00 0.00 41.92 4.00
2415 2943 6.729100 TCCTTTCATTCAACCTCCTAAGTCTA 59.271 38.462 0.00 0.00 0.00 2.59
2581 3109 2.520069 AGTGAACAACCACAAACACCA 58.480 42.857 0.00 0.00 39.42 4.17
2844 3377 1.072648 CCAACGAAACTTACCCTGGGA 59.927 52.381 22.23 0.00 0.00 4.37
3280 4002 3.962063 TGATATTGCCATGCATTTCTGGT 59.038 39.130 0.00 0.00 38.76 4.00
3290 4012 2.364970 TGCATTTCTGGTTTTGTCTGGG 59.635 45.455 0.00 0.00 0.00 4.45
3293 4015 3.374042 TTTCTGGTTTTGTCTGGGTGA 57.626 42.857 0.00 0.00 0.00 4.02
3506 4228 2.462723 TGGATTACGTCTGATGGTCCA 58.537 47.619 13.47 13.47 32.26 4.02
3734 4456 8.934507 AGTGTTGTTAGCTTACTTATCAGATC 57.065 34.615 4.27 0.00 0.00 2.75
3737 4459 8.680001 TGTTGTTAGCTTACTTATCAGATCGTA 58.320 33.333 4.27 0.00 0.00 3.43
3920 4642 1.846124 ACCCCGTGGTTGGTCTCAT 60.846 57.895 0.00 0.00 44.75 2.90
4103 4827 2.685388 GACTTGGCTATTCTTCCTTGGC 59.315 50.000 0.00 0.00 0.00 4.52
4210 4936 2.734606 TGAGCATTACACACTAACACGC 59.265 45.455 0.00 0.00 0.00 5.34
4231 4957 4.111916 GCTACTGTCTCAGCTCTTGATTC 58.888 47.826 0.00 0.00 34.68 2.52
4252 4978 5.626850 TCTACCCTTCCTATATGCCCTTA 57.373 43.478 0.00 0.00 0.00 2.69
4322 5048 2.292267 CTGAATCCAGTGCCGCTTATT 58.708 47.619 0.00 0.00 35.70 1.40
4351 5077 2.052782 ACAGGTGTGTGAACTTTCCC 57.947 50.000 0.00 0.00 34.75 3.97
4504 5238 1.271934 CATCAGGCTCGTAGATGAGGG 59.728 57.143 6.70 0.00 41.18 4.30
4529 5266 3.181450 GGGATAGATTTACCTGCTGCTGT 60.181 47.826 0.00 0.66 0.00 4.40
4578 5315 1.882623 GACTTTTGCTGGTTCCTGGAG 59.117 52.381 0.00 0.00 0.00 3.86
4617 5354 1.200020 GGATTTGAGCGAAACCCTGTG 59.800 52.381 0.00 0.00 0.00 3.66
4675 5412 0.820226 TCTCGAGACCTTGGCTGATG 59.180 55.000 12.08 0.00 0.00 3.07
4684 5421 1.612462 CCTTGGCTGATGAGTTGCAGA 60.612 52.381 0.00 0.00 34.06 4.26
4691 5428 3.309138 GCTGATGAGTTGCAGACACATAG 59.691 47.826 10.25 9.51 39.28 2.23
4751 5488 5.917447 CAGTACATCGGTCTAATGTCATGAG 59.083 44.000 0.00 0.00 38.31 2.90
4829 5566 7.605410 TCGTTCTTTAAACTGTGAAGTTTCT 57.395 32.000 7.10 0.00 41.58 2.52
4835 5572 8.956426 TCTTTAAACTGTGAAGTTTCTGATTGT 58.044 29.630 7.10 0.00 41.58 2.71
4864 5601 6.817641 GTGATCTGGCATTTCTCTATCTATGG 59.182 42.308 0.00 0.00 0.00 2.74
4882 5619 8.988064 ATCTATGGTATGCTACTAAATTGTCG 57.012 34.615 0.00 0.00 0.00 4.35
4885 5622 5.113383 TGGTATGCTACTAAATTGTCGGTG 58.887 41.667 0.00 0.00 0.00 4.94
4903 5640 6.640499 TGTCGGTGTTTGATCATTGATTTTTC 59.360 34.615 0.00 0.00 0.00 2.29
4904 5641 6.089417 GTCGGTGTTTGATCATTGATTTTTCC 59.911 38.462 0.00 0.00 0.00 3.13
4913 5935 7.131451 TGATCATTGATTTTTCCCCCTCATAA 58.869 34.615 0.00 0.00 0.00 1.90
4944 5966 5.133830 AGAAGTAAAAGGAAAAGACCCCTCA 59.866 40.000 0.00 0.00 31.17 3.86
4959 5981 2.626743 CCCCTCATTTGCTCATTGATCC 59.373 50.000 0.00 0.00 0.00 3.36
4960 5982 3.563223 CCCTCATTTGCTCATTGATCCT 58.437 45.455 0.00 0.00 0.00 3.24
5126 6437 6.775939 TCAAATCTCTCATATTGTCATCGC 57.224 37.500 0.00 0.00 0.00 4.58
5134 6445 6.337356 TCTCATATTGTCATCGCAACACTTA 58.663 36.000 0.00 0.00 0.00 2.24
5155 6466 9.552114 CACTTATCTCAAAATGTTGAATCAGAC 57.448 33.333 0.00 0.00 43.18 3.51
5171 6482 4.260139 TCAGACAAGCAAATACGTACCA 57.740 40.909 0.00 0.00 0.00 3.25
5184 6495 3.266510 ACGTACCAGCATGATGTCAAT 57.733 42.857 10.55 0.00 39.69 2.57
5216 6527 4.876107 GGCAGTACTATACTTGCAACATGT 59.124 41.667 0.00 0.00 36.76 3.21
5341 6656 2.933287 TCAACCCCACCCGCAGAT 60.933 61.111 0.00 0.00 0.00 2.90
5455 6770 3.442625 TCCGTACAACATCGTCAGATTCT 59.557 43.478 0.00 0.00 34.23 2.40
5461 6776 1.995484 ACATCGTCAGATTCTGCAACG 59.005 47.619 17.32 17.32 34.50 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 129 0.915364 AGCTCTCATTTCACCCCCTC 59.085 55.000 0.00 0.00 0.00 4.30
112 130 0.622665 CAGCTCTCATTTCACCCCCT 59.377 55.000 0.00 0.00 0.00 4.79
113 131 0.329596 ACAGCTCTCATTTCACCCCC 59.670 55.000 0.00 0.00 0.00 5.40
243 277 1.475034 GCCTCCATTTATGCCTCACGA 60.475 52.381 0.00 0.00 0.00 4.35
254 290 3.064324 GCTGCCACGCCTCCATTT 61.064 61.111 0.00 0.00 0.00 2.32
439 509 1.582461 CCCGATTTTCGCCGGTTTT 59.418 52.632 1.90 0.00 43.93 2.43
506 578 1.228894 TGAGGCCCTTCTCAGACGT 60.229 57.895 0.00 0.00 38.70 4.34
554 630 5.398603 ACAAATGTGACCAAGAAAACACA 57.601 34.783 0.00 0.00 45.06 3.72
629 709 6.544928 ACCTGACTTCCAAAACTTTGAATT 57.455 33.333 3.72 0.00 40.55 2.17
630 710 5.221048 CGACCTGACTTCCAAAACTTTGAAT 60.221 40.000 3.72 0.00 40.55 2.57
654 734 5.588240 AGGAAATTTCGTTGAACTTGGTTC 58.412 37.500 11.95 3.75 42.26 3.62
700 783 3.354397 GAGTCGCGCCATTCTTTTATTG 58.646 45.455 0.00 0.00 0.00 1.90
731 814 3.797353 CCTGGATGGTGGGACCCG 61.797 72.222 5.91 0.00 37.50 5.28
758 841 2.743126 ACTGTCTCGCGAGCTATATACC 59.257 50.000 30.97 10.75 0.00 2.73
799 882 4.285775 AGGTGGGGATTTATTTGGTGTTTG 59.714 41.667 0.00 0.00 0.00 2.93
899 982 4.459089 GGCACTGGCTCGGGAGAC 62.459 72.222 0.00 0.00 40.87 3.36
1079 1165 0.614979 AGAAGAAGCTGCTCGGGGTA 60.615 55.000 1.00 0.00 0.00 3.69
1083 1178 1.107114 TAGGAGAAGAAGCTGCTCGG 58.893 55.000 1.00 0.00 37.03 4.63
1102 1197 2.312436 GGCGCGTAACGGAACAAGT 61.312 57.895 8.43 0.00 43.93 3.16
1103 1198 1.952266 GAGGCGCGTAACGGAACAAG 61.952 60.000 8.43 0.00 43.93 3.16
1104 1199 2.023223 GAGGCGCGTAACGGAACAA 61.023 57.895 8.43 0.00 43.93 2.83
1120 1480 2.685380 AGGACAGCGGGAAGGGAG 60.685 66.667 0.00 0.00 0.00 4.30
1123 1483 4.148825 CCGAGGACAGCGGGAAGG 62.149 72.222 0.00 0.00 44.87 3.46
1132 1492 2.838748 ATCACGAGCTCCCGAGGACA 62.839 60.000 8.47 0.00 0.00 4.02
1137 1497 2.833582 GGGATCACGAGCTCCCGA 60.834 66.667 8.47 5.08 40.20 5.14
1147 1507 0.600255 CCACGCGGATTAGGGATCAC 60.600 60.000 12.47 0.00 36.43 3.06
1148 1508 1.745890 CCACGCGGATTAGGGATCA 59.254 57.895 12.47 0.00 36.43 2.92
1164 1524 3.872603 CCGAATCGATGGGCCCCA 61.873 66.667 22.27 4.05 38.19 4.96
1172 1532 0.909623 AACCAGAACCCCGAATCGAT 59.090 50.000 3.36 0.00 0.00 3.59
1179 1539 1.152839 AACCACAACCAGAACCCCG 60.153 57.895 0.00 0.00 0.00 5.73
1186 1546 2.123511 TGCCCCAACCACAACCAG 60.124 61.111 0.00 0.00 0.00 4.00
1187 1547 2.123511 CTGCCCCAACCACAACCA 60.124 61.111 0.00 0.00 0.00 3.67
1188 1548 2.917227 CCTGCCCCAACCACAACC 60.917 66.667 0.00 0.00 0.00 3.77
1189 1549 1.744320 GAACCTGCCCCAACCACAAC 61.744 60.000 0.00 0.00 0.00 3.32
1190 1550 1.456705 GAACCTGCCCCAACCACAA 60.457 57.895 0.00 0.00 0.00 3.33
1191 1551 2.197324 GAACCTGCCCCAACCACA 59.803 61.111 0.00 0.00 0.00 4.17
1192 1552 0.831711 ATTGAACCTGCCCCAACCAC 60.832 55.000 0.00 0.00 0.00 4.16
1193 1553 0.541764 GATTGAACCTGCCCCAACCA 60.542 55.000 0.00 0.00 0.00 3.67
1194 1554 1.595093 CGATTGAACCTGCCCCAACC 61.595 60.000 0.00 0.00 0.00 3.77
1195 1555 0.893727 ACGATTGAACCTGCCCCAAC 60.894 55.000 0.00 0.00 0.00 3.77
1196 1556 0.893270 CACGATTGAACCTGCCCCAA 60.893 55.000 0.00 0.00 0.00 4.12
1197 1557 1.303236 CACGATTGAACCTGCCCCA 60.303 57.895 0.00 0.00 0.00 4.96
1198 1558 1.303317 ACACGATTGAACCTGCCCC 60.303 57.895 0.00 0.00 0.00 5.80
1199 1559 0.605319 TCACACGATTGAACCTGCCC 60.605 55.000 0.00 0.00 0.00 5.36
1200 1560 1.453155 ATCACACGATTGAACCTGCC 58.547 50.000 0.00 0.00 0.00 4.85
1201 1561 2.474526 CGAATCACACGATTGAACCTGC 60.475 50.000 0.00 0.00 42.06 4.85
1202 1562 2.094258 CCGAATCACACGATTGAACCTG 59.906 50.000 0.00 0.00 42.06 4.00
1203 1563 2.289444 ACCGAATCACACGATTGAACCT 60.289 45.455 0.00 0.00 42.06 3.50
1204 1564 2.073816 ACCGAATCACACGATTGAACC 58.926 47.619 0.00 0.00 42.06 3.62
1205 1565 2.734606 TCACCGAATCACACGATTGAAC 59.265 45.455 0.00 0.00 42.06 3.18
1206 1566 3.033368 TCACCGAATCACACGATTGAA 57.967 42.857 0.00 0.00 42.06 2.69
1232 1593 2.368594 CCCAGGTGAGGAGCCCTA 59.631 66.667 0.00 0.00 31.76 3.53
1233 1594 4.748798 CCCCAGGTGAGGAGCCCT 62.749 72.222 0.00 0.00 36.03 5.19
1243 1604 4.572571 TCGCGCAAAACCCCAGGT 62.573 61.111 8.75 0.00 37.65 4.00
1265 1626 0.881796 GGAAGCAGCCAAACCTACAC 59.118 55.000 0.00 0.00 0.00 2.90
1267 1628 1.168714 CAGGAAGCAGCCAAACCTAC 58.831 55.000 0.00 0.00 0.00 3.18
1268 1629 0.038166 CCAGGAAGCAGCCAAACCTA 59.962 55.000 0.00 0.00 0.00 3.08
1269 1630 1.228675 CCAGGAAGCAGCCAAACCT 60.229 57.895 0.00 0.00 0.00 3.50
1270 1631 0.827507 TTCCAGGAAGCAGCCAAACC 60.828 55.000 0.00 0.00 0.00 3.27
1271 1632 1.203287 GATTCCAGGAAGCAGCCAAAC 59.797 52.381 12.88 0.00 0.00 2.93
1272 1633 1.076024 AGATTCCAGGAAGCAGCCAAA 59.924 47.619 19.75 0.00 29.60 3.28
1273 1634 0.700564 AGATTCCAGGAAGCAGCCAA 59.299 50.000 19.75 0.00 29.60 4.52
1274 1635 0.254178 GAGATTCCAGGAAGCAGCCA 59.746 55.000 19.75 0.00 29.60 4.75
1275 1636 0.465278 GGAGATTCCAGGAAGCAGCC 60.465 60.000 19.75 15.54 36.28 4.85
1276 1637 0.545646 AGGAGATTCCAGGAAGCAGC 59.454 55.000 19.75 10.56 39.61 5.25
1277 1638 1.134159 CCAGGAGATTCCAGGAAGCAG 60.134 57.143 19.75 6.27 45.26 4.24
1278 1639 0.914644 CCAGGAGATTCCAGGAAGCA 59.085 55.000 19.75 0.00 45.26 3.91
1279 1640 0.465278 GCCAGGAGATTCCAGGAAGC 60.465 60.000 9.66 9.66 45.26 3.86
1280 1641 1.211456 AGCCAGGAGATTCCAGGAAG 58.789 55.000 8.20 0.00 45.26 3.46
1281 1642 1.673767 AAGCCAGGAGATTCCAGGAA 58.326 50.000 3.72 3.72 45.26 3.36
1282 1643 1.283029 CAAAGCCAGGAGATTCCAGGA 59.717 52.381 10.41 0.00 45.26 3.86
1283 1644 1.684248 CCAAAGCCAGGAGATTCCAGG 60.684 57.143 2.40 2.40 45.21 4.45
1284 1645 1.760192 CCAAAGCCAGGAGATTCCAG 58.240 55.000 0.00 0.00 39.61 3.86
1285 1646 0.323725 GCCAAAGCCAGGAGATTCCA 60.324 55.000 0.00 0.00 39.61 3.53
1286 1647 0.323725 TGCCAAAGCCAGGAGATTCC 60.324 55.000 0.00 0.00 38.69 3.01
1287 1648 1.101331 CTGCCAAAGCCAGGAGATTC 58.899 55.000 0.00 0.00 38.69 2.52
1288 1649 0.324091 CCTGCCAAAGCCAGGAGATT 60.324 55.000 1.23 0.00 38.72 2.40
1289 1650 1.305623 CCTGCCAAAGCCAGGAGAT 59.694 57.895 1.23 0.00 38.72 2.75
1290 1651 2.759114 CCTGCCAAAGCCAGGAGA 59.241 61.111 1.23 0.00 38.72 3.71
1291 1652 3.066814 GCCTGCCAAAGCCAGGAG 61.067 66.667 11.38 0.00 38.72 3.69
1296 1657 3.134127 CTACGGCCTGCCAAAGCC 61.134 66.667 9.17 0.00 46.17 4.35
1297 1658 2.046314 TCTACGGCCTGCCAAAGC 60.046 61.111 9.17 0.00 40.48 3.51
1307 1668 4.885325 TGGGAAATTAAAATCCTCTACGGC 59.115 41.667 9.13 0.00 35.95 5.68
1357 1719 2.263741 GGCACCAGAGCACAACCAG 61.264 63.158 0.00 0.00 35.83 4.00
1363 1725 2.753043 CCCATGGCACCAGAGCAC 60.753 66.667 6.09 0.00 35.83 4.40
1391 1822 1.225745 GAAATCGCGACCGCAGTTG 60.226 57.895 12.93 0.00 42.06 3.16
1394 1825 0.804544 TTAGGAAATCGCGACCGCAG 60.805 55.000 12.93 7.44 42.06 5.18
1410 1841 4.101585 TCCATTGACAGCCTATCCTGTTAG 59.898 45.833 0.00 0.00 45.55 2.34
1505 1938 1.966451 GACCCCCTGCAAGTCGTTG 60.966 63.158 0.00 0.00 36.67 4.10
1592 2031 2.295909 TGCAGCTGAACCAAATGTTACC 59.704 45.455 20.43 0.00 37.29 2.85
1602 2041 3.641031 AAAAACGTGCAGCTGAACC 57.359 47.368 19.57 0.61 0.00 3.62
1625 2064 4.453819 GGACAAACACCAAGAGAGATTCAG 59.546 45.833 0.00 0.00 0.00 3.02
1627 2066 4.646572 AGGACAAACACCAAGAGAGATTC 58.353 43.478 0.00 0.00 0.00 2.52
1628 2067 4.713792 AGGACAAACACCAAGAGAGATT 57.286 40.909 0.00 0.00 0.00 2.40
1629 2068 4.646572 GAAGGACAAACACCAAGAGAGAT 58.353 43.478 0.00 0.00 0.00 2.75
1630 2069 3.492656 CGAAGGACAAACACCAAGAGAGA 60.493 47.826 0.00 0.00 0.00 3.10
1631 2070 2.802816 CGAAGGACAAACACCAAGAGAG 59.197 50.000 0.00 0.00 0.00 3.20
1675 2143 5.050904 CGCATTTGCAAATATAACACCATGG 60.051 40.000 23.69 11.19 42.21 3.66
1734 2206 3.806949 TCTGCACACCCCTATTCTTTT 57.193 42.857 0.00 0.00 0.00 2.27
1738 2210 4.130118 CTGTTATCTGCACACCCCTATTC 58.870 47.826 0.00 0.00 0.00 1.75
1740 2212 3.115390 ACTGTTATCTGCACACCCCTAT 58.885 45.455 0.00 0.00 0.00 2.57
1741 2213 2.546899 ACTGTTATCTGCACACCCCTA 58.453 47.619 0.00 0.00 0.00 3.53
1743 2215 2.200373 AACTGTTATCTGCACACCCC 57.800 50.000 0.00 0.00 0.00 4.95
1767 2240 8.621286 CCAAACTGTATTTGTCAGACTTAACTT 58.379 33.333 1.31 0.00 36.81 2.66
1860 2377 3.719268 TCACAATTGAGCCTACCATGT 57.281 42.857 13.59 0.00 0.00 3.21
1883 2400 6.930722 ACATGTCAAAAATCTTCCATCCAAAC 59.069 34.615 0.00 0.00 0.00 2.93
1892 2409 3.989817 GGCACCACATGTCAAAAATCTTC 59.010 43.478 0.00 0.00 31.05 2.87
1926 2443 6.230472 ACTCGGCATATGTAATAAATGCAGA 58.770 36.000 4.29 8.61 46.18 4.26
1934 2451 9.594478 CCATACATTAACTCGGCATATGTAATA 57.406 33.333 4.29 0.00 35.88 0.98
2133 2651 9.656040 TTTAGTCGTACAAAATATTTAGGAGCA 57.344 29.630 0.01 0.00 0.00 4.26
2178 2699 3.493699 GGGCGTAATCACTTGGTGCTATA 60.494 47.826 0.00 0.00 32.98 1.31
2320 2846 4.766891 AGGGTGTATTCCACATTCAACAAG 59.233 41.667 0.00 0.00 46.44 3.16
2388 2916 6.241645 ACTTAGGAGGTTGAATGAAAGGAAG 58.758 40.000 0.00 0.00 0.00 3.46
2389 2917 6.044404 AGACTTAGGAGGTTGAATGAAAGGAA 59.956 38.462 0.00 0.00 0.00 3.36
2415 2943 1.337118 ATCCACCAAATGCCAAACGT 58.663 45.000 0.00 0.00 0.00 3.99
2515 3043 5.720041 TGGTAGGTAAGTCTGCTGTAGAAAT 59.280 40.000 0.00 0.00 37.12 2.17
2934 3656 5.414454 AGTTCTTACACACAAAACAGCTTCA 59.586 36.000 0.00 0.00 0.00 3.02
3290 4012 4.035091 TGTTGCACAACAGTTATCAGTCAC 59.965 41.667 12.02 0.00 45.42 3.67
3720 4442 9.751542 ACAAGGAAATACGATCTGATAAGTAAG 57.248 33.333 8.78 0.00 0.00 2.34
3734 4456 2.076100 TGCTGAGCACAAGGAAATACG 58.924 47.619 1.40 0.00 31.71 3.06
3737 4459 1.884579 CACTGCTGAGCACAAGGAAAT 59.115 47.619 1.40 0.00 33.79 2.17
3739 4461 0.469494 TCACTGCTGAGCACAAGGAA 59.531 50.000 1.40 0.00 33.79 3.36
4058 4782 3.191371 GCAACCCAGAGAACATAACCAAG 59.809 47.826 0.00 0.00 0.00 3.61
4103 4827 5.166398 GCCTTTTCAACTGATGGAATTGAG 58.834 41.667 0.00 0.00 34.04 3.02
4210 4936 5.581126 AGAATCAAGAGCTGAGACAGTAG 57.419 43.478 0.00 0.00 37.52 2.57
4231 4957 5.342866 AGTAAGGGCATATAGGAAGGGTAG 58.657 45.833 0.00 0.00 0.00 3.18
4252 4978 4.262506 GCCTGTTAGGACTCAAGTGTAAGT 60.263 45.833 0.00 0.00 37.67 2.24
4419 5153 4.941263 AGTTTACCTGCAATAAATCGAGCA 59.059 37.500 6.20 0.00 35.43 4.26
4504 5238 3.565902 GCAGCAGGTAAATCTATCCCAAC 59.434 47.826 0.00 0.00 0.00 3.77
4529 5266 2.158986 GCAGATCAGCAAGGAAGCTCTA 60.159 50.000 5.05 0.00 44.54 2.43
4578 5315 8.567948 TCAAATCCTCATCTACTGAAAACAAAC 58.432 33.333 0.00 0.00 32.14 2.93
4617 5354 2.584791 CTACGAAATGGCAAAGCACAC 58.415 47.619 0.00 0.00 0.00 3.82
4675 5412 2.275318 GAGGCTATGTGTCTGCAACTC 58.725 52.381 0.00 0.00 0.00 3.01
4684 5421 1.274703 CCAGGGGTGAGGCTATGTGT 61.275 60.000 0.00 0.00 0.00 3.72
4751 5488 0.377203 GGTAATGCTTGCGTGCCTAC 59.623 55.000 0.00 1.25 0.00 3.18
4829 5566 1.001860 TGCCAGATCACGTCACAATCA 59.998 47.619 0.00 0.00 0.00 2.57
4835 5572 2.234661 AGAGAAATGCCAGATCACGTCA 59.765 45.455 0.00 0.00 0.00 4.35
4864 5601 6.657836 AACACCGACAATTTAGTAGCATAC 57.342 37.500 0.00 0.00 43.47 2.39
4875 5612 5.703978 TCAATGATCAAACACCGACAATT 57.296 34.783 0.00 0.00 0.00 2.32
4882 5619 5.643348 GGGGAAAAATCAATGATCAAACACC 59.357 40.000 0.00 0.00 0.00 4.16
4885 5622 6.053632 AGGGGGAAAAATCAATGATCAAAC 57.946 37.500 0.00 0.00 0.00 2.93
4913 5935 8.851145 GGTCTTTTCCTTTTACTTCTCTCAATT 58.149 33.333 0.00 0.00 0.00 2.32
4932 5954 3.243359 TGAGCAAATGAGGGGTCTTTT 57.757 42.857 0.00 0.00 32.93 2.27
4944 5966 5.759059 TCCAGTAAGGATCAATGAGCAAAT 58.241 37.500 0.00 0.00 43.07 2.32
4959 5981 8.017418 AGGAAGATTCAGTTATCTCCAGTAAG 57.983 38.462 0.00 0.00 33.81 2.34
4960 5982 7.979786 AGGAAGATTCAGTTATCTCCAGTAA 57.020 36.000 0.00 0.00 33.81 2.24
5104 6415 6.535274 TGCGATGACAATATGAGAGATTTG 57.465 37.500 0.00 0.00 0.00 2.32
5124 6435 6.142139 TCAACATTTTGAGATAAGTGTTGCG 58.858 36.000 15.51 0.28 46.58 4.85
5134 6445 7.088905 GCTTGTCTGATTCAACATTTTGAGAT 58.911 34.615 0.00 0.00 42.79 2.75
5155 6466 3.373748 TCATGCTGGTACGTATTTGCTTG 59.626 43.478 17.74 17.74 0.00 4.01
5171 6482 6.127281 TGCCTTTTTCATATTGACATCATGCT 60.127 34.615 0.00 0.00 0.00 3.79
5184 6495 8.044309 TGCAAGTATAGTACTGCCTTTTTCATA 58.956 33.333 5.39 0.00 39.39 2.15
5341 6656 3.412654 CAATAACGCGAAAAATGCTCGA 58.587 40.909 15.93 0.00 38.61 4.04
5461 6776 2.793946 GATGACATGCACGCCCAC 59.206 61.111 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.