Multiple sequence alignment - TraesCS6D01G072300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G072300 chr6D 100.000 4295 0 0 1 4295 36779639 36783933 0.000000e+00 7932.0
1 TraesCS6D01G072300 chr6B 91.313 3154 208 22 754 3883 85708321 85711432 0.000000e+00 4246.0
2 TraesCS6D01G072300 chr6B 86.333 439 44 6 196 628 85707646 85708074 8.410000e-127 464.0
3 TraesCS6D01G072300 chr6B 86.828 372 30 9 3938 4295 85713278 85713644 8.650000e-107 398.0
4 TraesCS6D01G072300 chr6B 91.228 114 7 1 629 742 85708152 85708262 7.440000e-33 152.0
5 TraesCS6D01G072300 chr6A 93.148 1547 61 22 2272 3816 48527796 48529299 0.000000e+00 2228.0
6 TraesCS6D01G072300 chr6A 90.083 1563 98 12 754 2286 48525006 48526541 0.000000e+00 1975.0
7 TraesCS6D01G072300 chr6A 87.906 339 28 6 3938 4266 48529549 48529884 1.870000e-103 387.0
8 TraesCS6D01G072300 chr6A 84.122 296 20 11 198 475 48524090 48524376 1.180000e-65 261.0
9 TraesCS6D01G072300 chr6A 91.270 126 9 2 3801 3926 48529358 48529481 2.050000e-38 171.0
10 TraesCS6D01G072300 chr6A 87.162 148 13 5 484 626 48524664 48524810 3.440000e-36 163.0
11 TraesCS6D01G072300 chr3B 82.897 994 154 11 2308 3293 779194874 779195859 0.000000e+00 880.0
12 TraesCS6D01G072300 chr5B 82.182 999 157 14 2396 3380 694154661 694153670 0.000000e+00 839.0
13 TraesCS6D01G072300 chr3D 83.409 880 145 1 2414 3293 582231789 582230911 0.000000e+00 815.0
14 TraesCS6D01G072300 chr4A 83.352 883 135 8 2419 3294 613399855 613398978 0.000000e+00 806.0
15 TraesCS6D01G072300 chr3A 80.603 1062 186 13 2307 3358 1897533 1896482 0.000000e+00 802.0
16 TraesCS6D01G072300 chr7A 82.599 908 156 2 2399 3305 81003508 81004414 0.000000e+00 800.0
17 TraesCS6D01G072300 chr7A 81.403 898 163 4 2399 3294 11434193 11435088 0.000000e+00 730.0
18 TraesCS6D01G072300 chr2A 80.412 97 16 3 9 104 102696722 102696628 2.140000e-08 71.3
19 TraesCS6D01G072300 chrUn 83.607 61 10 0 3343 3403 47796168 47796108 1.670000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G072300 chr6D 36779639 36783933 4294 False 7932.000000 7932 100.0000 1 4295 1 chr6D.!!$F1 4294
1 TraesCS6D01G072300 chr6B 85707646 85713644 5998 False 1315.000000 4246 88.9255 196 4295 4 chr6B.!!$F1 4099
2 TraesCS6D01G072300 chr6A 48524090 48529884 5794 False 864.166667 2228 88.9485 198 4266 6 chr6A.!!$F1 4068
3 TraesCS6D01G072300 chr3B 779194874 779195859 985 False 880.000000 880 82.8970 2308 3293 1 chr3B.!!$F1 985
4 TraesCS6D01G072300 chr5B 694153670 694154661 991 True 839.000000 839 82.1820 2396 3380 1 chr5B.!!$R1 984
5 TraesCS6D01G072300 chr3D 582230911 582231789 878 True 815.000000 815 83.4090 2414 3293 1 chr3D.!!$R1 879
6 TraesCS6D01G072300 chr4A 613398978 613399855 877 True 806.000000 806 83.3520 2419 3294 1 chr4A.!!$R1 875
7 TraesCS6D01G072300 chr3A 1896482 1897533 1051 True 802.000000 802 80.6030 2307 3358 1 chr3A.!!$R1 1051
8 TraesCS6D01G072300 chr7A 81003508 81004414 906 False 800.000000 800 82.5990 2399 3305 1 chr7A.!!$F2 906
9 TraesCS6D01G072300 chr7A 11434193 11435088 895 False 730.000000 730 81.4030 2399 3294 1 chr7A.!!$F1 895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.034896 GCCCTGTCAGTCTCCGAAAA 59.965 55.0 0.00 0.00 0.00 2.29 F
356 373 0.238289 GTTCACGATTGTGGCCTGTG 59.762 55.0 13.27 3.45 46.42 3.66 F
816 1253 0.318614 CAACCACACCGCCAACAATC 60.319 55.0 0.00 0.00 0.00 2.67 F
2039 2519 0.672711 GGCGTCTACAAGTTCCCCAC 60.673 60.0 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 2417 0.390472 CTCCCTCGAACAGCCAAGAC 60.390 60.000 0.00 0.0 0.00 3.01 R
2237 2717 0.321122 AGCAGCTCTGAAACCCGAAG 60.321 55.000 0.29 0.0 0.00 3.79 R
2465 4214 1.076549 GAACCTGGCAATGTCCCCA 59.923 57.895 0.00 0.0 0.00 4.96 R
4038 7677 1.003233 GTGGTTGTTAGGGACTCCTGG 59.997 57.143 0.00 0.0 44.61 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.772932 ACAACGTACGTTCAGTGAAAGA 58.227 40.909 29.67 6.37 36.00 2.52
22 23 4.175516 ACAACGTACGTTCAGTGAAAGAA 58.824 39.130 29.67 2.35 36.00 2.52
23 24 4.266976 ACAACGTACGTTCAGTGAAAGAAG 59.733 41.667 29.67 16.24 36.00 2.85
24 25 4.297299 ACGTACGTTCAGTGAAAGAAGA 57.703 40.909 23.14 7.15 0.00 2.87
25 26 4.868067 ACGTACGTTCAGTGAAAGAAGAT 58.132 39.130 23.14 5.50 0.00 2.40
26 27 4.680110 ACGTACGTTCAGTGAAAGAAGATG 59.320 41.667 23.14 14.91 0.00 2.90
27 28 4.680110 CGTACGTTCAGTGAAAGAAGATGT 59.320 41.667 23.14 7.89 0.00 3.06
28 29 5.175126 CGTACGTTCAGTGAAAGAAGATGTT 59.825 40.000 23.14 3.85 0.00 2.71
29 30 5.659048 ACGTTCAGTGAAAGAAGATGTTC 57.341 39.130 23.14 0.00 0.00 3.18
30 31 4.511826 ACGTTCAGTGAAAGAAGATGTTCC 59.488 41.667 23.14 0.00 32.48 3.62
31 32 4.083802 CGTTCAGTGAAAGAAGATGTTCCC 60.084 45.833 12.86 0.00 32.48 3.97
32 33 3.664107 TCAGTGAAAGAAGATGTTCCCG 58.336 45.455 0.00 0.00 32.48 5.14
33 34 2.160417 CAGTGAAAGAAGATGTTCCCGC 59.840 50.000 0.00 0.00 32.48 6.13
34 35 1.468914 GTGAAAGAAGATGTTCCCGCC 59.531 52.381 0.00 0.00 32.48 6.13
35 36 0.727398 GAAAGAAGATGTTCCCGCCG 59.273 55.000 0.00 0.00 32.48 6.46
36 37 0.323629 AAAGAAGATGTTCCCGCCGA 59.676 50.000 0.00 0.00 32.48 5.54
37 38 0.391263 AAGAAGATGTTCCCGCCGAC 60.391 55.000 0.00 0.00 32.48 4.79
38 39 1.218316 GAAGATGTTCCCGCCGACT 59.782 57.895 0.00 0.00 0.00 4.18
39 40 0.458669 GAAGATGTTCCCGCCGACTA 59.541 55.000 0.00 0.00 0.00 2.59
40 41 0.175073 AAGATGTTCCCGCCGACTAC 59.825 55.000 0.00 0.00 0.00 2.73
41 42 0.968901 AGATGTTCCCGCCGACTACA 60.969 55.000 0.00 0.00 0.00 2.74
42 43 0.108520 GATGTTCCCGCCGACTACAA 60.109 55.000 0.00 0.00 0.00 2.41
43 44 0.322322 ATGTTCCCGCCGACTACAAA 59.678 50.000 0.00 0.00 0.00 2.83
44 45 0.320073 TGTTCCCGCCGACTACAAAG 60.320 55.000 0.00 0.00 0.00 2.77
45 46 0.037975 GTTCCCGCCGACTACAAAGA 60.038 55.000 0.00 0.00 0.00 2.52
46 47 0.037975 TTCCCGCCGACTACAAAGAC 60.038 55.000 0.00 0.00 0.00 3.01
47 48 1.804326 CCCGCCGACTACAAAGACG 60.804 63.158 0.00 0.00 40.01 4.18
48 49 1.080974 CCGCCGACTACAAAGACGT 60.081 57.895 0.00 0.00 38.90 4.34
49 50 1.342082 CCGCCGACTACAAAGACGTG 61.342 60.000 0.00 0.00 38.90 4.49
50 51 0.662374 CGCCGACTACAAAGACGTGT 60.662 55.000 0.00 0.00 38.90 4.49
51 52 0.782384 GCCGACTACAAAGACGTGTG 59.218 55.000 0.00 0.00 38.90 3.82
52 53 1.866880 GCCGACTACAAAGACGTGTGT 60.867 52.381 0.00 0.00 38.90 3.72
53 54 1.784856 CCGACTACAAAGACGTGTGTG 59.215 52.381 0.41 0.41 38.90 3.82
54 55 2.542205 CCGACTACAAAGACGTGTGTGA 60.542 50.000 10.30 0.00 38.90 3.58
55 56 2.466571 CGACTACAAAGACGTGTGTGAC 59.533 50.000 10.30 0.00 36.37 3.67
68 69 4.732285 GTGTGTGACGACTTCATCAATT 57.268 40.909 0.00 0.00 36.32 2.32
69 70 5.095691 GTGTGTGACGACTTCATCAATTT 57.904 39.130 0.00 0.00 36.32 1.82
70 71 5.510671 GTGTGTGACGACTTCATCAATTTT 58.489 37.500 0.00 0.00 36.32 1.82
71 72 6.655062 GTGTGTGACGACTTCATCAATTTTA 58.345 36.000 0.00 0.00 36.32 1.52
72 73 7.129622 GTGTGTGACGACTTCATCAATTTTAA 58.870 34.615 0.00 0.00 36.32 1.52
73 74 7.642194 GTGTGTGACGACTTCATCAATTTTAAA 59.358 33.333 0.00 0.00 36.32 1.52
74 75 8.184848 TGTGTGACGACTTCATCAATTTTAAAA 58.815 29.630 2.51 2.51 36.32 1.52
75 76 9.180678 GTGTGACGACTTCATCAATTTTAAAAT 57.819 29.630 7.64 7.64 36.32 1.82
76 77 9.179552 TGTGACGACTTCATCAATTTTAAAATG 57.820 29.630 14.04 8.65 36.32 2.32
77 78 9.393249 GTGACGACTTCATCAATTTTAAAATGA 57.607 29.630 14.04 13.06 36.32 2.57
80 81 9.912634 ACGACTTCATCAATTTTAAAATGATGT 57.087 25.926 28.70 22.92 38.48 3.06
85 86 8.774890 TCATCAATTTTAAAATGATGTGTGGG 57.225 30.769 28.70 16.67 36.47 4.61
86 87 7.333921 TCATCAATTTTAAAATGATGTGTGGGC 59.666 33.333 28.70 0.00 36.47 5.36
87 88 6.767456 TCAATTTTAAAATGATGTGTGGGCT 58.233 32.000 14.04 0.00 0.00 5.19
88 89 6.873076 TCAATTTTAAAATGATGTGTGGGCTC 59.127 34.615 14.04 0.00 0.00 4.70
89 90 4.433186 TTTAAAATGATGTGTGGGCTCG 57.567 40.909 0.00 0.00 0.00 5.03
90 91 1.176527 AAAATGATGTGTGGGCTCGG 58.823 50.000 0.00 0.00 0.00 4.63
91 92 0.038166 AAATGATGTGTGGGCTCGGT 59.962 50.000 0.00 0.00 0.00 4.69
92 93 0.392998 AATGATGTGTGGGCTCGGTC 60.393 55.000 0.00 0.00 0.00 4.79
93 94 1.267574 ATGATGTGTGGGCTCGGTCT 61.268 55.000 0.00 0.00 0.00 3.85
94 95 1.153549 GATGTGTGGGCTCGGTCTC 60.154 63.158 0.00 0.00 0.00 3.36
95 96 1.608717 GATGTGTGGGCTCGGTCTCT 61.609 60.000 0.00 0.00 0.00 3.10
96 97 1.608717 ATGTGTGGGCTCGGTCTCTC 61.609 60.000 0.00 0.00 0.00 3.20
97 98 3.062466 TGTGGGCTCGGTCTCTCG 61.062 66.667 0.00 0.00 0.00 4.04
98 99 4.500116 GTGGGCTCGGTCTCTCGC 62.500 72.222 0.00 0.00 0.00 5.03
100 101 4.200283 GGGCTCGGTCTCTCGCAG 62.200 72.222 0.00 0.00 0.00 5.18
101 102 4.200283 GGCTCGGTCTCTCGCAGG 62.200 72.222 0.00 0.00 0.00 4.85
102 103 3.444805 GCTCGGTCTCTCGCAGGT 61.445 66.667 0.00 0.00 0.00 4.00
103 104 2.487428 CTCGGTCTCTCGCAGGTG 59.513 66.667 0.00 0.00 0.00 4.00
104 105 3.691744 CTCGGTCTCTCGCAGGTGC 62.692 68.421 0.00 0.00 37.78 5.01
105 106 3.753434 CGGTCTCTCGCAGGTGCT 61.753 66.667 0.00 0.00 39.32 4.40
106 107 2.125753 GGTCTCTCGCAGGTGCTG 60.126 66.667 0.00 0.00 39.32 4.41
107 108 2.125753 GTCTCTCGCAGGTGCTGG 60.126 66.667 0.00 0.00 39.32 4.85
108 109 2.601666 TCTCTCGCAGGTGCTGGT 60.602 61.111 0.00 0.00 39.32 4.00
109 110 1.304134 TCTCTCGCAGGTGCTGGTA 60.304 57.895 0.00 0.00 39.32 3.25
110 111 1.140589 CTCTCGCAGGTGCTGGTAG 59.859 63.158 0.00 0.00 39.32 3.18
111 112 1.599606 CTCTCGCAGGTGCTGGTAGT 61.600 60.000 0.00 0.00 39.32 2.73
112 113 1.185618 TCTCGCAGGTGCTGGTAGTT 61.186 55.000 0.00 0.00 39.32 2.24
113 114 0.737715 CTCGCAGGTGCTGGTAGTTC 60.738 60.000 0.00 0.00 39.32 3.01
114 115 1.005037 CGCAGGTGCTGGTAGTTCA 60.005 57.895 0.00 0.00 39.32 3.18
115 116 0.391661 CGCAGGTGCTGGTAGTTCAT 60.392 55.000 0.00 0.00 39.32 2.57
116 117 1.089920 GCAGGTGCTGGTAGTTCATG 58.910 55.000 0.00 0.00 38.21 3.07
117 118 1.742761 CAGGTGCTGGTAGTTCATGG 58.257 55.000 0.00 0.00 0.00 3.66
118 119 0.620556 AGGTGCTGGTAGTTCATGGG 59.379 55.000 0.00 0.00 0.00 4.00
119 120 0.618458 GGTGCTGGTAGTTCATGGGA 59.382 55.000 0.00 0.00 0.00 4.37
120 121 1.004277 GGTGCTGGTAGTTCATGGGAA 59.996 52.381 0.00 0.00 0.00 3.97
132 133 4.908601 TTCATGGGAACTGAGTGTATGT 57.091 40.909 0.00 0.00 0.00 2.29
133 134 4.206477 TCATGGGAACTGAGTGTATGTG 57.794 45.455 0.00 0.00 0.00 3.21
134 135 2.472695 TGGGAACTGAGTGTATGTGC 57.527 50.000 0.00 0.00 0.00 4.57
135 136 1.337728 TGGGAACTGAGTGTATGTGCG 60.338 52.381 0.00 0.00 0.00 5.34
136 137 0.721718 GGAACTGAGTGTATGTGCGC 59.278 55.000 0.00 0.00 0.00 6.09
137 138 1.673033 GGAACTGAGTGTATGTGCGCT 60.673 52.381 9.73 0.00 0.00 5.92
138 139 1.656095 GAACTGAGTGTATGTGCGCTC 59.344 52.381 9.73 5.51 43.95 5.03
139 140 0.108615 ACTGAGTGTATGTGCGCTCC 60.109 55.000 9.73 0.00 43.27 4.70
140 141 0.174389 CTGAGTGTATGTGCGCTCCT 59.826 55.000 9.73 0.00 43.27 3.69
141 142 0.108662 TGAGTGTATGTGCGCTCCTG 60.109 55.000 9.73 0.00 43.27 3.86
142 143 0.108615 GAGTGTATGTGCGCTCCTGT 60.109 55.000 9.73 0.00 39.39 4.00
143 144 1.134367 GAGTGTATGTGCGCTCCTGTA 59.866 52.381 9.73 0.00 39.39 2.74
144 145 1.135083 AGTGTATGTGCGCTCCTGTAC 60.135 52.381 9.73 9.09 0.00 2.90
145 146 1.135083 GTGTATGTGCGCTCCTGTACT 60.135 52.381 9.73 0.00 0.00 2.73
146 147 1.135112 TGTATGTGCGCTCCTGTACTG 60.135 52.381 9.73 0.00 0.00 2.74
147 148 0.179111 TATGTGCGCTCCTGTACTGC 60.179 55.000 9.73 0.00 0.00 4.40
148 149 2.815647 GTGCGCTCCTGTACTGCC 60.816 66.667 9.73 0.00 0.00 4.85
149 150 4.082523 TGCGCTCCTGTACTGCCC 62.083 66.667 9.73 0.00 0.00 5.36
150 151 3.775654 GCGCTCCTGTACTGCCCT 61.776 66.667 0.00 0.00 0.00 5.19
151 152 2.185350 CGCTCCTGTACTGCCCTG 59.815 66.667 0.00 0.00 0.00 4.45
152 153 2.650116 CGCTCCTGTACTGCCCTGT 61.650 63.158 0.00 0.00 0.00 4.00
153 154 1.219393 GCTCCTGTACTGCCCTGTC 59.781 63.158 0.00 0.00 0.00 3.51
154 155 1.544825 GCTCCTGTACTGCCCTGTCA 61.545 60.000 0.00 0.00 0.00 3.58
155 156 0.534412 CTCCTGTACTGCCCTGTCAG 59.466 60.000 0.00 0.00 39.86 3.51
157 158 0.247736 CCTGTACTGCCCTGTCAGTC 59.752 60.000 0.00 0.00 45.32 3.51
158 159 1.261480 CTGTACTGCCCTGTCAGTCT 58.739 55.000 0.00 0.00 45.32 3.24
159 160 1.203523 CTGTACTGCCCTGTCAGTCTC 59.796 57.143 0.00 0.00 45.32 3.36
160 161 0.533032 GTACTGCCCTGTCAGTCTCC 59.467 60.000 0.00 0.00 45.32 3.71
161 162 0.965866 TACTGCCCTGTCAGTCTCCG 60.966 60.000 0.00 0.00 45.32 4.63
162 163 1.979155 CTGCCCTGTCAGTCTCCGA 60.979 63.158 0.00 0.00 0.00 4.55
163 164 1.533033 TGCCCTGTCAGTCTCCGAA 60.533 57.895 0.00 0.00 0.00 4.30
164 165 1.118965 TGCCCTGTCAGTCTCCGAAA 61.119 55.000 0.00 0.00 0.00 3.46
165 166 0.034896 GCCCTGTCAGTCTCCGAAAA 59.965 55.000 0.00 0.00 0.00 2.29
166 167 1.542547 GCCCTGTCAGTCTCCGAAAAA 60.543 52.381 0.00 0.00 0.00 1.94
167 168 2.417719 CCCTGTCAGTCTCCGAAAAAG 58.582 52.381 0.00 0.00 0.00 2.27
168 169 2.417719 CCTGTCAGTCTCCGAAAAAGG 58.582 52.381 0.00 0.00 0.00 3.11
169 170 2.417719 CTGTCAGTCTCCGAAAAAGGG 58.582 52.381 0.00 0.00 0.00 3.95
170 171 1.071699 TGTCAGTCTCCGAAAAAGGGG 59.928 52.381 0.00 0.00 0.00 4.79
171 172 1.346722 GTCAGTCTCCGAAAAAGGGGA 59.653 52.381 0.00 0.00 38.74 4.81
172 173 2.027100 GTCAGTCTCCGAAAAAGGGGAT 60.027 50.000 0.00 0.00 43.71 3.85
173 174 2.236395 TCAGTCTCCGAAAAAGGGGATC 59.764 50.000 0.00 0.00 43.71 3.36
174 175 2.027192 CAGTCTCCGAAAAAGGGGATCA 60.027 50.000 0.00 0.00 43.71 2.92
175 176 2.027100 AGTCTCCGAAAAAGGGGATCAC 60.027 50.000 0.00 0.00 43.71 3.06
176 177 1.982226 TCTCCGAAAAAGGGGATCACA 59.018 47.619 0.00 0.00 35.46 3.58
177 178 2.576191 TCTCCGAAAAAGGGGATCACAT 59.424 45.455 0.00 0.00 35.46 3.21
178 179 3.778075 TCTCCGAAAAAGGGGATCACATA 59.222 43.478 0.00 0.00 35.46 2.29
179 180 4.226394 TCTCCGAAAAAGGGGATCACATAA 59.774 41.667 0.00 0.00 35.46 1.90
180 181 4.924625 TCCGAAAAAGGGGATCACATAAA 58.075 39.130 0.00 0.00 0.00 1.40
181 182 5.326069 TCCGAAAAAGGGGATCACATAAAA 58.674 37.500 0.00 0.00 0.00 1.52
182 183 5.184287 TCCGAAAAAGGGGATCACATAAAAC 59.816 40.000 0.00 0.00 0.00 2.43
183 184 5.092781 CGAAAAAGGGGATCACATAAAACG 58.907 41.667 0.00 0.00 0.00 3.60
184 185 5.335348 CGAAAAAGGGGATCACATAAAACGT 60.335 40.000 0.00 0.00 0.00 3.99
185 186 5.638596 AAAAGGGGATCACATAAAACGTC 57.361 39.130 0.00 0.00 0.00 4.34
186 187 3.277142 AGGGGATCACATAAAACGTCC 57.723 47.619 0.00 0.00 0.00 4.79
187 188 2.844348 AGGGGATCACATAAAACGTCCT 59.156 45.455 0.00 0.00 0.00 3.85
188 189 3.265995 AGGGGATCACATAAAACGTCCTT 59.734 43.478 0.00 0.00 0.00 3.36
189 190 4.014406 GGGGATCACATAAAACGTCCTTT 58.986 43.478 0.00 0.00 0.00 3.11
190 191 4.142469 GGGGATCACATAAAACGTCCTTTG 60.142 45.833 0.00 0.00 0.00 2.77
191 192 4.412207 GGATCACATAAAACGTCCTTTGC 58.588 43.478 0.00 0.00 0.00 3.68
192 193 3.907894 TCACATAAAACGTCCTTTGCC 57.092 42.857 0.00 0.00 0.00 4.52
193 194 2.554893 TCACATAAAACGTCCTTTGCCC 59.445 45.455 0.00 0.00 0.00 5.36
194 195 2.294791 CACATAAAACGTCCTTTGCCCA 59.705 45.455 0.00 0.00 0.00 5.36
226 227 1.478105 GGCGCCTCATTCCAAAATCTT 59.522 47.619 22.15 0.00 0.00 2.40
233 234 4.159377 TCATTCCAAAATCTTGTCGCAC 57.841 40.909 0.00 0.00 0.00 5.34
242 243 1.155424 TCTTGTCGCACGGGAACAAC 61.155 55.000 2.29 0.00 0.00 3.32
282 292 0.322636 TCCTCCTCACCGAGACAGAC 60.323 60.000 0.00 0.00 30.97 3.51
293 303 2.473816 CGAGACAGACTTTGCACTTGA 58.526 47.619 0.00 0.00 0.00 3.02
299 309 6.233434 AGACAGACTTTGCACTTGATATCAA 58.767 36.000 17.07 17.07 0.00 2.57
302 312 6.183360 ACAGACTTTGCACTTGATATCAATCG 60.183 38.462 18.26 13.00 35.02 3.34
315 325 1.640428 TCAATCGAGACATGAACCGC 58.360 50.000 0.00 0.00 0.00 5.68
356 373 0.238289 GTTCACGATTGTGGCCTGTG 59.762 55.000 13.27 3.45 46.42 3.66
374 391 1.143073 GTGTTCCCAGACTTTCAGGGT 59.857 52.381 3.76 0.00 43.14 4.34
506 804 3.755628 GTCGGCGTCAGGGTAGCA 61.756 66.667 6.85 0.00 0.00 3.49
510 808 1.302192 GGCGTCAGGGTAGCAACAA 60.302 57.895 0.00 0.00 0.00 2.83
511 809 1.298859 GGCGTCAGGGTAGCAACAAG 61.299 60.000 0.00 0.00 0.00 3.16
521 824 4.117685 GGGTAGCAACAAGAGGTAATACG 58.882 47.826 0.00 0.00 0.00 3.06
525 828 3.770933 AGCAACAAGAGGTAATACGGGTA 59.229 43.478 0.00 0.00 0.00 3.69
598 901 2.826128 TCTCTGCCGTAAGAGTTCATGT 59.174 45.455 10.43 0.00 43.57 3.21
611 914 3.076887 AGTTCATGTCAGCATGCACCAA 61.077 45.455 21.98 2.77 45.85 3.67
618 921 5.911378 TGTCAGCATGCACCAATAATTTA 57.089 34.783 21.98 0.00 34.76 1.40
634 1014 9.730420 CCAATAATTTACCAAATACTGTACTGC 57.270 33.333 0.00 0.00 0.00 4.40
637 1017 4.540359 TTACCAAATACTGTACTGCCGT 57.460 40.909 0.00 0.00 0.00 5.68
738 1128 0.610174 ATGCCTGATGTCGACTGTGT 59.390 50.000 17.92 0.00 0.00 3.72
742 1132 1.467543 CCTGATGTCGACTGTGTACCG 60.468 57.143 17.92 0.00 0.00 4.02
743 1133 0.524414 TGATGTCGACTGTGTACCGG 59.476 55.000 17.92 0.00 0.00 5.28
745 1135 1.200716 GATGTCGACTGTGTACCGGAA 59.799 52.381 17.92 0.00 0.00 4.30
746 1136 1.250328 TGTCGACTGTGTACCGGAAT 58.750 50.000 17.92 0.00 0.00 3.01
747 1137 1.068125 TGTCGACTGTGTACCGGAATG 60.068 52.381 17.92 0.00 0.00 2.67
749 1139 1.068125 TCGACTGTGTACCGGAATGTG 60.068 52.381 9.46 0.00 0.00 3.21
750 1140 1.722011 GACTGTGTACCGGAATGTGG 58.278 55.000 9.46 0.00 0.00 4.17
751 1141 0.323629 ACTGTGTACCGGAATGTGGG 59.676 55.000 9.46 0.00 0.00 4.61
771 1208 1.000843 GGGCTCAACATTTTCCACACC 59.999 52.381 0.00 0.00 0.00 4.16
775 1212 3.628017 CTCAACATTTTCCACACCGAAC 58.372 45.455 0.00 0.00 0.00 3.95
776 1213 3.283751 TCAACATTTTCCACACCGAACT 58.716 40.909 0.00 0.00 0.00 3.01
778 1215 1.953686 ACATTTTCCACACCGAACTGG 59.046 47.619 0.00 0.00 46.41 4.00
813 1250 0.753479 ATTCAACCACACCGCCAACA 60.753 50.000 0.00 0.00 0.00 3.33
816 1253 0.318614 CAACCACACCGCCAACAATC 60.319 55.000 0.00 0.00 0.00 2.67
827 1264 1.963515 GCCAACAATCTTTGACCTGGT 59.036 47.619 0.00 0.00 33.79 4.00
828 1265 2.029918 GCCAACAATCTTTGACCTGGTC 60.030 50.000 19.96 19.96 33.79 4.02
867 1309 1.408340 CACACCATTGACTTGCAACCA 59.592 47.619 0.00 0.00 39.78 3.67
876 1318 2.165437 TGACTTGCAACCAAAGGTGTTC 59.835 45.455 0.00 0.00 35.34 3.18
879 1321 1.398692 TGCAACCAAAGGTGTTCCTC 58.601 50.000 0.00 0.00 44.35 3.71
898 1344 3.181485 CCTCGGTTCCTATCTGTTCAGTC 60.181 52.174 0.00 0.00 0.00 3.51
904 1350 4.047627 TCCTATCTGTTCAGTCAGGACA 57.952 45.455 15.55 0.00 36.25 4.02
938 1392 7.554118 CACATCCATTAGTCACCAAGAAATACT 59.446 37.037 0.00 0.00 0.00 2.12
1004 1458 4.646492 ACCAAGAAATACCTCATCAATGGC 59.354 41.667 0.00 0.00 0.00 4.40
1031 1485 1.968540 GCAAGTGGAGGTCTGTGCC 60.969 63.158 0.00 0.00 0.00 5.01
1142 1596 3.817647 CCTGGGCAATCTCTAAATGCTAC 59.182 47.826 0.00 0.00 39.94 3.58
1198 1652 3.228188 TGGGTTTCAACTGCTCATTCT 57.772 42.857 0.00 0.00 0.00 2.40
1199 1653 3.149196 TGGGTTTCAACTGCTCATTCTC 58.851 45.455 0.00 0.00 0.00 2.87
1200 1654 2.160417 GGGTTTCAACTGCTCATTCTCG 59.840 50.000 0.00 0.00 0.00 4.04
1203 1657 2.168326 TCAACTGCTCATTCTCGCAA 57.832 45.000 0.00 0.00 35.46 4.85
1207 1661 5.600696 TCAACTGCTCATTCTCGCAATATA 58.399 37.500 0.00 0.00 35.46 0.86
1208 1662 5.693555 TCAACTGCTCATTCTCGCAATATAG 59.306 40.000 0.00 0.00 35.46 1.31
1210 1664 5.605534 ACTGCTCATTCTCGCAATATAGTT 58.394 37.500 0.00 0.00 35.46 2.24
1211 1665 6.749139 ACTGCTCATTCTCGCAATATAGTTA 58.251 36.000 0.00 0.00 35.46 2.24
1212 1666 7.382110 ACTGCTCATTCTCGCAATATAGTTAT 58.618 34.615 0.00 0.00 35.46 1.89
1213 1667 7.875041 ACTGCTCATTCTCGCAATATAGTTATT 59.125 33.333 0.00 0.00 35.46 1.40
1214 1668 9.358872 CTGCTCATTCTCGCAATATAGTTATTA 57.641 33.333 0.00 0.00 35.46 0.98
1274 1728 2.416547 CGTCCCATGATGATTATTCGCC 59.583 50.000 0.00 0.00 0.00 5.54
1294 1748 3.800628 GTTTGGCAACCTGATCAGC 57.199 52.632 17.76 6.66 0.00 4.26
1295 1749 1.251251 GTTTGGCAACCTGATCAGCT 58.749 50.000 17.76 0.00 0.00 4.24
1297 1751 3.019564 GTTTGGCAACCTGATCAGCTAT 58.980 45.455 17.76 1.81 0.00 2.97
1301 1755 2.289320 GGCAACCTGATCAGCTATCGAT 60.289 50.000 17.76 2.16 37.42 3.59
1304 1758 4.991056 GCAACCTGATCAGCTATCGATTTA 59.009 41.667 17.76 0.00 37.42 1.40
1307 1761 6.352016 ACCTGATCAGCTATCGATTTATGT 57.648 37.500 17.76 2.03 37.42 2.29
1312 1766 5.328886 TCAGCTATCGATTTATGTTTGCG 57.671 39.130 1.71 0.00 0.00 4.85
1314 1768 5.175673 TCAGCTATCGATTTATGTTTGCGAG 59.824 40.000 1.71 0.00 34.25 5.03
1325 1779 3.044235 TGTTTGCGAGTCATCATCAGT 57.956 42.857 0.00 0.00 0.00 3.41
1341 1795 7.565029 TCATCATCAGTTACCCTATCAGAGAAA 59.435 37.037 0.00 0.00 0.00 2.52
1344 1798 5.838955 TCAGTTACCCTATCAGAGAAAGGA 58.161 41.667 0.00 0.00 31.64 3.36
1346 1800 6.729100 TCAGTTACCCTATCAGAGAAAGGAAA 59.271 38.462 0.00 0.00 31.64 3.13
1347 1801 7.236847 TCAGTTACCCTATCAGAGAAAGGAAAA 59.763 37.037 0.00 0.00 31.64 2.29
1362 1816 9.543783 GAGAAAGGAAAACTACATATAACCGAT 57.456 33.333 0.00 0.00 0.00 4.18
1363 1817 9.326413 AGAAAGGAAAACTACATATAACCGATG 57.674 33.333 0.00 0.00 0.00 3.84
1365 1819 7.369551 AGGAAAACTACATATAACCGATGGA 57.630 36.000 0.00 0.00 0.00 3.41
1366 1820 7.442656 AGGAAAACTACATATAACCGATGGAG 58.557 38.462 0.00 0.00 40.58 3.86
1372 1826 3.135712 ACATATAACCGATGGAGTTGGCA 59.864 43.478 0.00 0.00 34.32 4.92
1373 1827 2.799126 ATAACCGATGGAGTTGGCAA 57.201 45.000 0.00 0.00 34.32 4.52
1379 1833 1.838112 GATGGAGTTGGCAATGTCCA 58.162 50.000 27.02 27.02 43.23 4.02
1385 1839 3.196254 GGAGTTGGCAATGTCCATTTGAT 59.804 43.478 20.85 0.00 35.77 2.57
1388 1842 4.159135 AGTTGGCAATGTCCATTTGATCTC 59.841 41.667 1.92 0.00 35.77 2.75
1396 1850 7.350467 CAATGTCCATTTGATCTCAGATTACG 58.650 38.462 0.00 0.00 0.00 3.18
1397 1851 4.811024 TGTCCATTTGATCTCAGATTACGC 59.189 41.667 0.00 0.00 0.00 4.42
1412 1866 3.853831 TTACGCGATGACCACTTCTAA 57.146 42.857 15.93 0.00 0.00 2.10
1476 1930 2.576615 AGAGACCAAGCAAACAGTTCC 58.423 47.619 0.00 0.00 0.00 3.62
1532 1986 1.001764 CACTGCTCCCTGGAATGCA 60.002 57.895 0.00 1.56 0.00 3.96
1556 2035 2.492025 AGGGTCCAGCATGATCCTTTA 58.508 47.619 0.00 0.00 39.69 1.85
1660 2139 9.561069 GAGGTTTTATTATTCAGCAGAATCCTA 57.439 33.333 7.71 0.00 43.26 2.94
1718 2197 3.859411 AGTTCGTGAAGATGGAGACTC 57.141 47.619 0.00 0.00 0.00 3.36
1734 2213 5.221263 TGGAGACTCTGTTCTGACACTAAAC 60.221 44.000 1.74 0.00 0.00 2.01
1843 2322 3.745975 TCCAGACAGTTTATGCGACTTTG 59.254 43.478 0.00 0.00 0.00 2.77
1844 2323 3.745975 CCAGACAGTTTATGCGACTTTGA 59.254 43.478 0.00 0.00 0.00 2.69
1845 2324 4.143030 CCAGACAGTTTATGCGACTTTGAG 60.143 45.833 0.00 0.00 0.00 3.02
1846 2325 4.449068 CAGACAGTTTATGCGACTTTGAGT 59.551 41.667 0.00 0.00 0.00 3.41
1847 2326 4.686554 AGACAGTTTATGCGACTTTGAGTC 59.313 41.667 0.00 0.00 41.71 3.36
1848 2327 4.377021 ACAGTTTATGCGACTTTGAGTCA 58.623 39.130 8.62 0.00 45.30 3.41
1892 2372 1.000938 CAAAAGGTCAGGCTTCTGCAC 60.001 52.381 0.00 0.00 41.91 4.57
1917 2397 1.135024 CCTGCCGGTTTTGATCCATTG 60.135 52.381 1.90 0.00 0.00 2.82
1937 2417 6.128391 CCATTGAGCACAAAATCAAGGAATTG 60.128 38.462 0.00 0.00 39.02 2.32
1973 2453 3.203040 AGGGAGGTTCCTATGAATTGTGG 59.797 47.826 0.00 0.00 36.57 4.17
1975 2455 4.325030 GGGAGGTTCCTATGAATTGTGGAA 60.325 45.833 0.00 0.00 36.57 3.53
1996 2476 3.265791 AGAGACAATTCAACTCATCGGC 58.734 45.455 0.00 0.00 33.69 5.54
2039 2519 0.672711 GGCGTCTACAAGTTCCCCAC 60.673 60.000 0.00 0.00 0.00 4.61
2057 2537 0.984230 ACGAATTCTTGGCCCTCTGA 59.016 50.000 0.00 0.00 0.00 3.27
2237 2717 3.063316 GCCACCAAACAACAACATGAAAC 59.937 43.478 0.00 0.00 0.00 2.78
2359 4108 8.677148 AACAAAGTTATTCAGAGCAAGAACTA 57.323 30.769 0.00 0.00 36.93 2.24
2465 4214 3.530535 GTGGTTTTGGCTGTGTTTTCAT 58.469 40.909 0.00 0.00 0.00 2.57
3305 5066 0.659957 GAGGATTGATTGCACTCGCC 59.340 55.000 0.00 1.50 37.32 5.54
3309 5070 2.288666 GATTGATTGCACTCGCCCTAA 58.711 47.619 0.00 0.00 37.32 2.69
3427 5196 2.433239 TCTCCAAACTACGCTTATCCCC 59.567 50.000 0.00 0.00 0.00 4.81
3518 5287 1.179152 CTGTTGGCATGATGGCTTGA 58.821 50.000 19.96 3.57 44.10 3.02
3620 5390 7.939039 TCAAGATATGGGGTGAATGAATTCTAC 59.061 37.037 7.05 1.17 37.67 2.59
3640 5410 4.634184 ACTAGATGTACTTACTGCACCG 57.366 45.455 0.00 0.00 0.00 4.94
3647 5417 2.295253 ACTTACTGCACCGCATACTC 57.705 50.000 0.00 0.00 38.13 2.59
3668 5438 4.069304 TCCCGTCTTTCCACAAACTAATG 58.931 43.478 0.00 0.00 0.00 1.90
3671 5441 5.334879 CCCGTCTTTCCACAAACTAATGAAG 60.335 44.000 0.00 0.00 0.00 3.02
3758 5528 8.856490 AATATCAATTATGTCTTTTTCCACGC 57.144 30.769 0.00 0.00 0.00 5.34
3776 5546 5.178996 TCCACGCGCTAAATTTACTTGTTAA 59.821 36.000 5.73 0.00 0.00 2.01
3860 5704 1.725641 TTCTGGCTGTCTGTAATGCG 58.274 50.000 0.00 0.00 0.00 4.73
3863 5707 1.020861 TGGCTGTCTGTAATGCGCAG 61.021 55.000 18.32 0.74 35.43 5.18
3887 5731 8.997323 CAGAATTTAGATTAGATCCATGGACAC 58.003 37.037 18.99 14.44 0.00 3.67
3965 7600 3.561143 TCTGCTTTAAGCTTGGTTGGAA 58.439 40.909 18.20 0.00 42.97 3.53
4030 7669 5.277857 ACAAATAAGGAGTCTGGGATACG 57.722 43.478 0.00 0.00 37.60 3.06
4038 7677 6.347859 AGGAGTCTGGGATACGAATAATTC 57.652 41.667 0.00 0.00 37.60 2.17
4085 7724 2.037772 ACGACCAGGATCTAATGATGCC 59.962 50.000 0.00 0.00 41.22 4.40
4218 7872 3.050275 GTTGCCAGACAGTCCGCC 61.050 66.667 7.58 0.00 0.00 6.13
4233 7887 0.716108 CCGCCGCGATGATTATCTTC 59.284 55.000 15.93 0.00 0.00 2.87
4238 7892 2.989840 CCGCGATGATTATCTTCCTCAC 59.010 50.000 8.23 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.772932 TCTTTCACTGAACGTACGTTGT 58.227 40.909 36.11 25.25 38.60 3.32
1 2 4.501559 TCTTCTTTCACTGAACGTACGTTG 59.498 41.667 36.11 24.60 38.60 4.10
2 3 4.675510 TCTTCTTTCACTGAACGTACGTT 58.324 39.130 32.17 32.17 41.54 3.99
3 4 4.297299 TCTTCTTTCACTGAACGTACGT 57.703 40.909 16.72 16.72 0.00 3.57
5 6 6.346678 GGAACATCTTCTTTCACTGAACGTAC 60.347 42.308 0.00 0.00 0.00 3.67
7 8 4.511826 GGAACATCTTCTTTCACTGAACGT 59.488 41.667 0.00 0.00 0.00 3.99
8 9 4.083802 GGGAACATCTTCTTTCACTGAACG 60.084 45.833 0.00 0.00 0.00 3.95
10 11 4.065088 CGGGAACATCTTCTTTCACTGAA 58.935 43.478 0.00 0.00 0.00 3.02
11 12 3.664107 CGGGAACATCTTCTTTCACTGA 58.336 45.455 0.00 0.00 0.00 3.41
12 13 2.160417 GCGGGAACATCTTCTTTCACTG 59.840 50.000 0.00 0.00 0.00 3.66
13 14 2.427506 GCGGGAACATCTTCTTTCACT 58.572 47.619 0.00 0.00 0.00 3.41
14 15 1.468914 GGCGGGAACATCTTCTTTCAC 59.531 52.381 0.00 0.00 0.00 3.18
15 16 1.821216 GGCGGGAACATCTTCTTTCA 58.179 50.000 0.00 0.00 0.00 2.69
16 17 0.727398 CGGCGGGAACATCTTCTTTC 59.273 55.000 0.00 0.00 0.00 2.62
17 18 0.323629 TCGGCGGGAACATCTTCTTT 59.676 50.000 7.21 0.00 0.00 2.52
18 19 0.391263 GTCGGCGGGAACATCTTCTT 60.391 55.000 7.21 0.00 0.00 2.52
19 20 1.218316 GTCGGCGGGAACATCTTCT 59.782 57.895 7.21 0.00 0.00 2.85
20 21 0.458669 TAGTCGGCGGGAACATCTTC 59.541 55.000 7.21 0.00 0.00 2.87
21 22 0.175073 GTAGTCGGCGGGAACATCTT 59.825 55.000 7.21 0.00 0.00 2.40
22 23 0.968901 TGTAGTCGGCGGGAACATCT 60.969 55.000 7.21 0.00 0.00 2.90
23 24 0.108520 TTGTAGTCGGCGGGAACATC 60.109 55.000 7.21 0.00 0.00 3.06
24 25 0.322322 TTTGTAGTCGGCGGGAACAT 59.678 50.000 7.21 0.00 0.00 2.71
25 26 0.320073 CTTTGTAGTCGGCGGGAACA 60.320 55.000 7.21 6.02 0.00 3.18
26 27 0.037975 TCTTTGTAGTCGGCGGGAAC 60.038 55.000 7.21 3.11 0.00 3.62
27 28 0.037975 GTCTTTGTAGTCGGCGGGAA 60.038 55.000 7.21 0.00 0.00 3.97
28 29 1.588082 GTCTTTGTAGTCGGCGGGA 59.412 57.895 7.21 0.00 0.00 5.14
29 30 1.804326 CGTCTTTGTAGTCGGCGGG 60.804 63.158 7.21 0.00 30.78 6.13
30 31 1.080974 ACGTCTTTGTAGTCGGCGG 60.081 57.895 7.21 0.00 37.27 6.13
31 32 0.662374 ACACGTCTTTGTAGTCGGCG 60.662 55.000 0.00 0.00 37.27 6.46
32 33 0.782384 CACACGTCTTTGTAGTCGGC 59.218 55.000 0.00 0.00 37.27 5.54
33 34 1.784856 CACACACGTCTTTGTAGTCGG 59.215 52.381 0.00 0.00 37.27 4.79
34 35 2.466571 GTCACACACGTCTTTGTAGTCG 59.533 50.000 0.00 0.00 38.59 4.18
35 36 2.466571 CGTCACACACGTCTTTGTAGTC 59.533 50.000 0.00 0.00 44.07 2.59
36 37 2.456989 CGTCACACACGTCTTTGTAGT 58.543 47.619 0.00 0.00 44.07 2.73
47 48 4.732285 AATTGATGAAGTCGTCACACAC 57.268 40.909 2.65 0.00 41.18 3.82
48 49 5.749596 AAAATTGATGAAGTCGTCACACA 57.250 34.783 2.65 0.00 41.18 3.72
49 50 8.555166 TTTTAAAATTGATGAAGTCGTCACAC 57.445 30.769 2.65 0.00 41.18 3.82
50 51 9.179552 CATTTTAAAATTGATGAAGTCGTCACA 57.820 29.630 10.77 0.00 41.18 3.58
51 52 9.393249 TCATTTTAAAATTGATGAAGTCGTCAC 57.607 29.630 10.77 0.00 41.18 3.67
54 55 9.912634 ACATCATTTTAAAATTGATGAAGTCGT 57.087 25.926 32.38 19.99 37.36 4.34
59 60 9.217278 CCCACACATCATTTTAAAATTGATGAA 57.783 29.630 32.38 13.29 37.36 2.57
60 61 7.333921 GCCCACACATCATTTTAAAATTGATGA 59.666 33.333 32.38 22.18 37.36 2.92
61 62 7.334921 AGCCCACACATCATTTTAAAATTGATG 59.665 33.333 28.63 28.63 38.46 3.07
62 63 7.396418 AGCCCACACATCATTTTAAAATTGAT 58.604 30.769 16.07 15.35 0.00 2.57
63 64 6.767456 AGCCCACACATCATTTTAAAATTGA 58.233 32.000 16.07 14.14 0.00 2.57
64 65 6.183360 CGAGCCCACACATCATTTTAAAATTG 60.183 38.462 10.77 10.29 0.00 2.32
65 66 5.868801 CGAGCCCACACATCATTTTAAAATT 59.131 36.000 10.77 0.00 0.00 1.82
66 67 5.410067 CGAGCCCACACATCATTTTAAAAT 58.590 37.500 7.64 7.64 0.00 1.82
67 68 4.321601 CCGAGCCCACACATCATTTTAAAA 60.322 41.667 2.51 2.51 0.00 1.52
68 69 3.192422 CCGAGCCCACACATCATTTTAAA 59.808 43.478 0.00 0.00 0.00 1.52
69 70 2.752354 CCGAGCCCACACATCATTTTAA 59.248 45.455 0.00 0.00 0.00 1.52
70 71 2.290641 ACCGAGCCCACACATCATTTTA 60.291 45.455 0.00 0.00 0.00 1.52
71 72 1.176527 CCGAGCCCACACATCATTTT 58.823 50.000 0.00 0.00 0.00 1.82
72 73 0.038166 ACCGAGCCCACACATCATTT 59.962 50.000 0.00 0.00 0.00 2.32
73 74 0.392998 GACCGAGCCCACACATCATT 60.393 55.000 0.00 0.00 0.00 2.57
74 75 1.221840 GACCGAGCCCACACATCAT 59.778 57.895 0.00 0.00 0.00 2.45
75 76 1.888436 GAGACCGAGCCCACACATCA 61.888 60.000 0.00 0.00 0.00 3.07
76 77 1.153549 GAGACCGAGCCCACACATC 60.154 63.158 0.00 0.00 0.00 3.06
77 78 1.608717 GAGAGACCGAGCCCACACAT 61.609 60.000 0.00 0.00 0.00 3.21
78 79 2.203640 AGAGACCGAGCCCACACA 60.204 61.111 0.00 0.00 0.00 3.72
79 80 2.574399 GAGAGACCGAGCCCACAC 59.426 66.667 0.00 0.00 0.00 3.82
80 81 3.062466 CGAGAGACCGAGCCCACA 61.062 66.667 0.00 0.00 0.00 4.17
81 82 4.500116 GCGAGAGACCGAGCCCAC 62.500 72.222 0.00 0.00 0.00 4.61
83 84 4.200283 CTGCGAGAGACCGAGCCC 62.200 72.222 0.00 0.00 0.00 5.19
84 85 4.200283 CCTGCGAGAGACCGAGCC 62.200 72.222 0.00 0.00 0.00 4.70
85 86 3.444805 ACCTGCGAGAGACCGAGC 61.445 66.667 0.00 0.00 0.00 5.03
86 87 2.487428 CACCTGCGAGAGACCGAG 59.513 66.667 0.00 0.00 0.00 4.63
87 88 3.749064 GCACCTGCGAGAGACCGA 61.749 66.667 0.00 0.00 0.00 4.69
97 98 1.089920 CATGAACTACCAGCACCTGC 58.910 55.000 0.00 0.00 42.49 4.85
98 99 1.679944 CCCATGAACTACCAGCACCTG 60.680 57.143 0.00 0.00 0.00 4.00
99 100 0.620556 CCCATGAACTACCAGCACCT 59.379 55.000 0.00 0.00 0.00 4.00
100 101 0.618458 TCCCATGAACTACCAGCACC 59.382 55.000 0.00 0.00 0.00 5.01
101 102 2.084546 GTTCCCATGAACTACCAGCAC 58.915 52.381 0.00 0.00 46.03 4.40
102 103 2.489938 GTTCCCATGAACTACCAGCA 57.510 50.000 0.00 0.00 46.03 4.41
111 112 4.578871 CACATACACTCAGTTCCCATGAA 58.421 43.478 0.00 0.00 0.00 2.57
112 113 3.619733 GCACATACACTCAGTTCCCATGA 60.620 47.826 0.00 0.00 0.00 3.07
113 114 2.679837 GCACATACACTCAGTTCCCATG 59.320 50.000 0.00 0.00 0.00 3.66
114 115 2.677902 CGCACATACACTCAGTTCCCAT 60.678 50.000 0.00 0.00 0.00 4.00
115 116 1.337728 CGCACATACACTCAGTTCCCA 60.338 52.381 0.00 0.00 0.00 4.37
116 117 1.359848 CGCACATACACTCAGTTCCC 58.640 55.000 0.00 0.00 0.00 3.97
117 118 0.721718 GCGCACATACACTCAGTTCC 59.278 55.000 0.30 0.00 0.00 3.62
118 119 1.656095 GAGCGCACATACACTCAGTTC 59.344 52.381 11.47 0.00 0.00 3.01
119 120 1.673033 GGAGCGCACATACACTCAGTT 60.673 52.381 11.47 0.00 0.00 3.16
120 121 0.108615 GGAGCGCACATACACTCAGT 60.109 55.000 11.47 0.00 0.00 3.41
121 122 0.174389 AGGAGCGCACATACACTCAG 59.826 55.000 11.47 0.00 0.00 3.35
122 123 0.108662 CAGGAGCGCACATACACTCA 60.109 55.000 11.47 0.00 0.00 3.41
123 124 0.108615 ACAGGAGCGCACATACACTC 60.109 55.000 11.47 0.00 0.00 3.51
124 125 1.135083 GTACAGGAGCGCACATACACT 60.135 52.381 11.47 0.00 0.00 3.55
125 126 1.135083 AGTACAGGAGCGCACATACAC 60.135 52.381 11.47 2.11 0.00 2.90
126 127 1.135112 CAGTACAGGAGCGCACATACA 60.135 52.381 11.47 0.00 0.00 2.29
127 128 1.560923 CAGTACAGGAGCGCACATAC 58.439 55.000 11.47 7.57 0.00 2.39
128 129 0.179111 GCAGTACAGGAGCGCACATA 60.179 55.000 11.47 0.00 0.00 2.29
129 130 1.448540 GCAGTACAGGAGCGCACAT 60.449 57.895 11.47 0.00 0.00 3.21
130 131 2.048222 GCAGTACAGGAGCGCACA 60.048 61.111 11.47 0.00 0.00 4.57
131 132 2.815647 GGCAGTACAGGAGCGCAC 60.816 66.667 11.47 1.97 0.00 5.34
132 133 4.082523 GGGCAGTACAGGAGCGCA 62.083 66.667 11.47 0.00 40.46 6.09
133 134 3.775654 AGGGCAGTACAGGAGCGC 61.776 66.667 0.00 0.00 40.97 5.92
134 135 2.185350 CAGGGCAGTACAGGAGCG 59.815 66.667 0.00 0.00 0.00 5.03
135 136 1.219393 GACAGGGCAGTACAGGAGC 59.781 63.158 0.00 0.00 0.00 4.70
136 137 0.534412 CTGACAGGGCAGTACAGGAG 59.466 60.000 0.00 0.00 0.00 3.69
137 138 0.178932 ACTGACAGGGCAGTACAGGA 60.179 55.000 5.87 0.00 46.67 3.86
138 139 2.366469 ACTGACAGGGCAGTACAGG 58.634 57.895 5.87 0.00 46.67 4.00
144 145 1.536073 TTCGGAGACTGACAGGGCAG 61.536 60.000 7.51 0.00 41.63 4.85
145 146 1.118965 TTTCGGAGACTGACAGGGCA 61.119 55.000 7.51 0.00 34.32 5.36
146 147 0.034896 TTTTCGGAGACTGACAGGGC 59.965 55.000 7.51 0.00 34.32 5.19
147 148 2.417719 CTTTTTCGGAGACTGACAGGG 58.582 52.381 7.51 0.00 34.32 4.45
148 149 2.417719 CCTTTTTCGGAGACTGACAGG 58.582 52.381 7.51 0.00 34.32 4.00
149 150 2.417719 CCCTTTTTCGGAGACTGACAG 58.582 52.381 0.00 0.00 34.32 3.51
150 151 1.071699 CCCCTTTTTCGGAGACTGACA 59.928 52.381 0.00 0.00 34.32 3.58
151 152 1.346722 TCCCCTTTTTCGGAGACTGAC 59.653 52.381 0.00 0.00 34.32 3.51
152 153 1.724545 TCCCCTTTTTCGGAGACTGA 58.275 50.000 0.00 0.00 34.32 3.41
153 154 2.027192 TGATCCCCTTTTTCGGAGACTG 60.027 50.000 0.00 0.00 34.32 3.51
154 155 2.027100 GTGATCCCCTTTTTCGGAGACT 60.027 50.000 0.00 0.00 34.32 3.24
155 156 2.290071 TGTGATCCCCTTTTTCGGAGAC 60.290 50.000 0.00 0.00 34.32 3.36
156 157 1.982226 TGTGATCCCCTTTTTCGGAGA 59.018 47.619 0.00 0.00 0.00 3.71
157 158 2.489938 TGTGATCCCCTTTTTCGGAG 57.510 50.000 0.00 0.00 0.00 4.63
158 159 4.577988 TTATGTGATCCCCTTTTTCGGA 57.422 40.909 0.00 0.00 0.00 4.55
159 160 5.407502 GTTTTATGTGATCCCCTTTTTCGG 58.592 41.667 0.00 0.00 0.00 4.30
160 161 5.092781 CGTTTTATGTGATCCCCTTTTTCG 58.907 41.667 0.00 0.00 0.00 3.46
161 162 6.020971 ACGTTTTATGTGATCCCCTTTTTC 57.979 37.500 0.00 0.00 0.00 2.29
162 163 5.047590 GGACGTTTTATGTGATCCCCTTTTT 60.048 40.000 0.00 0.00 0.00 1.94
163 164 4.461431 GGACGTTTTATGTGATCCCCTTTT 59.539 41.667 0.00 0.00 0.00 2.27
164 165 4.014406 GGACGTTTTATGTGATCCCCTTT 58.986 43.478 0.00 0.00 0.00 3.11
165 166 3.265995 AGGACGTTTTATGTGATCCCCTT 59.734 43.478 0.00 0.00 0.00 3.95
166 167 2.844348 AGGACGTTTTATGTGATCCCCT 59.156 45.455 0.00 0.00 0.00 4.79
167 168 3.277142 AGGACGTTTTATGTGATCCCC 57.723 47.619 0.00 0.00 0.00 4.81
168 169 4.674362 GCAAAGGACGTTTTATGTGATCCC 60.674 45.833 0.00 0.00 0.00 3.85
169 170 4.412207 GCAAAGGACGTTTTATGTGATCC 58.588 43.478 0.00 0.00 0.00 3.36
170 171 4.412207 GGCAAAGGACGTTTTATGTGATC 58.588 43.478 0.00 0.00 0.00 2.92
171 172 3.192633 GGGCAAAGGACGTTTTATGTGAT 59.807 43.478 0.00 0.00 0.00 3.06
172 173 2.554893 GGGCAAAGGACGTTTTATGTGA 59.445 45.455 0.00 0.00 0.00 3.58
173 174 2.294791 TGGGCAAAGGACGTTTTATGTG 59.705 45.455 0.00 0.00 0.00 3.21
174 175 2.295070 GTGGGCAAAGGACGTTTTATGT 59.705 45.455 0.00 0.00 0.00 2.29
175 176 2.352323 GGTGGGCAAAGGACGTTTTATG 60.352 50.000 0.00 0.00 0.00 1.90
176 177 1.890489 GGTGGGCAAAGGACGTTTTAT 59.110 47.619 0.00 0.00 0.00 1.40
177 178 1.320507 GGTGGGCAAAGGACGTTTTA 58.679 50.000 0.00 0.00 0.00 1.52
178 179 0.684805 TGGTGGGCAAAGGACGTTTT 60.685 50.000 0.00 0.00 0.00 2.43
179 180 1.076632 TGGTGGGCAAAGGACGTTT 60.077 52.632 0.00 0.00 0.00 3.60
180 181 1.528309 CTGGTGGGCAAAGGACGTT 60.528 57.895 0.00 0.00 0.00 3.99
181 182 2.113139 CTGGTGGGCAAAGGACGT 59.887 61.111 0.00 0.00 0.00 4.34
182 183 3.365265 GCTGGTGGGCAAAGGACG 61.365 66.667 0.00 0.00 0.00 4.79
183 184 2.991540 GGCTGGTGGGCAAAGGAC 60.992 66.667 0.00 0.00 40.53 3.85
226 227 1.593209 GAGTTGTTCCCGTGCGACA 60.593 57.895 0.00 0.00 0.00 4.35
233 234 0.868406 GCTCTGTTGAGTTGTTCCCG 59.132 55.000 0.00 0.00 42.13 5.14
242 243 2.683362 ACATGATGCATGCTCTGTTGAG 59.317 45.455 20.33 4.01 44.80 3.02
282 292 6.036408 TGTCTCGATTGATATCAAGTGCAAAG 59.964 38.462 21.97 13.12 39.47 2.77
293 303 3.990469 GCGGTTCATGTCTCGATTGATAT 59.010 43.478 8.09 0.00 0.00 1.63
299 309 1.645034 CTTGCGGTTCATGTCTCGAT 58.355 50.000 8.09 0.00 0.00 3.59
302 312 0.036388 TCCCTTGCGGTTCATGTCTC 60.036 55.000 0.00 0.00 0.00 3.36
315 325 0.545309 TCCTCACACTCCCTCCCTTG 60.545 60.000 0.00 0.00 0.00 3.61
328 338 2.480419 CACAATCGTGAACCTTCCTCAC 59.520 50.000 0.00 0.00 46.80 3.51
418 435 2.564062 AGGCATTTCATCAAACACCCTG 59.436 45.455 0.00 0.00 0.00 4.45
476 495 3.114616 CCGACTGAAGCGGCACAG 61.115 66.667 19.92 19.92 42.55 3.66
506 804 4.356436 AGGTACCCGTATTACCTCTTGTT 58.644 43.478 8.74 0.00 45.30 2.83
521 824 5.014808 TCATAACTAAAGCGAAGGTACCC 57.985 43.478 8.74 0.00 37.06 3.69
525 828 5.657474 TCGATTCATAACTAAAGCGAAGGT 58.343 37.500 0.00 0.00 39.95 3.50
530 833 6.571520 GCATCTTTCGATTCATAACTAAAGCG 59.428 38.462 0.00 0.00 35.74 4.68
561 864 5.277974 CGGCAGAGAGTCAAAATCAAAAGAA 60.278 40.000 0.00 0.00 0.00 2.52
598 901 4.708909 TGGTAAATTATTGGTGCATGCTGA 59.291 37.500 20.33 0.00 0.00 4.26
611 914 7.771826 ACGGCAGTACAGTATTTGGTAAATTAT 59.228 33.333 0.00 0.00 32.38 1.28
618 921 4.160814 TCATACGGCAGTACAGTATTTGGT 59.839 41.667 0.00 0.00 37.53 3.67
633 1013 1.337387 GGACTGACTAGGTCATACGGC 59.663 57.143 0.71 0.00 41.94 5.68
634 1014 2.619177 CAGGACTGACTAGGTCATACGG 59.381 54.545 0.71 0.00 41.94 4.02
637 1017 4.864483 AGACAGGACTGACTAGGTCATA 57.136 45.455 6.29 0.00 41.94 2.15
692 1072 3.504520 GGCTAGTACTGGCATCTAGAGTC 59.495 52.174 29.41 7.90 38.96 3.36
693 1073 3.117474 TGGCTAGTACTGGCATCTAGAGT 60.117 47.826 29.41 3.54 38.96 3.24
694 1074 3.491342 TGGCTAGTACTGGCATCTAGAG 58.509 50.000 29.41 6.37 38.96 2.43
738 1128 2.285818 AGCCCCCACATTCCGGTA 60.286 61.111 0.00 0.00 0.00 4.02
742 1132 0.324645 ATGTTGAGCCCCCACATTCC 60.325 55.000 0.00 0.00 0.00 3.01
743 1133 1.560505 AATGTTGAGCCCCCACATTC 58.439 50.000 1.77 0.00 0.00 2.67
745 1135 1.901833 GAAAATGTTGAGCCCCCACAT 59.098 47.619 0.00 0.00 0.00 3.21
746 1136 1.337118 GAAAATGTTGAGCCCCCACA 58.663 50.000 0.00 0.00 0.00 4.17
747 1137 0.608130 GGAAAATGTTGAGCCCCCAC 59.392 55.000 0.00 0.00 0.00 4.61
749 1139 0.608130 GTGGAAAATGTTGAGCCCCC 59.392 55.000 0.00 0.00 0.00 5.40
750 1140 1.000843 GTGTGGAAAATGTTGAGCCCC 59.999 52.381 0.00 0.00 0.00 5.80
751 1141 1.000843 GGTGTGGAAAATGTTGAGCCC 59.999 52.381 0.00 0.00 0.00 5.19
771 1208 0.179048 TGGATAGCCATGCCAGTTCG 60.179 55.000 0.00 0.00 39.92 3.95
792 1229 0.387202 TTGGCGGTGTGGTTGAATTG 59.613 50.000 0.00 0.00 0.00 2.32
827 1264 4.956075 TGTGCTATGTCATAGAGGAGTTGA 59.044 41.667 21.78 0.00 34.77 3.18
828 1265 5.046529 GTGTGCTATGTCATAGAGGAGTTG 58.953 45.833 21.78 0.00 34.77 3.16
831 1268 3.638627 TGGTGTGCTATGTCATAGAGGAG 59.361 47.826 21.78 0.00 34.77 3.69
867 1309 1.137697 AGGAACCGAGGAACACCTTT 58.862 50.000 0.00 0.00 33.73 3.11
876 1318 2.761208 ACTGAACAGATAGGAACCGAGG 59.239 50.000 8.87 0.00 0.00 4.63
879 1321 3.429547 CCTGACTGAACAGATAGGAACCG 60.430 52.174 17.18 0.00 39.94 4.44
898 1344 0.459237 GATGTGCTCCGTCTGTCCTG 60.459 60.000 0.00 0.00 0.00 3.86
938 1392 2.749076 CGTCCTGGCTGAATTTGATGAA 59.251 45.455 0.00 0.00 0.00 2.57
1004 1458 1.018226 CCTCCACTTGCTTGCTCTCG 61.018 60.000 0.00 0.00 0.00 4.04
1031 1485 3.483421 AGTAAAACAAAGGAAGACGGGG 58.517 45.455 0.00 0.00 0.00 5.73
1142 1596 1.280133 TGTTTGAGAGCAGGATCTGGG 59.720 52.381 0.00 0.00 31.21 4.45
1190 1644 8.596380 GGTAATAACTATATTGCGAGAATGAGC 58.404 37.037 0.00 0.00 35.62 4.26
1192 1646 7.758076 CCGGTAATAACTATATTGCGAGAATGA 59.242 37.037 0.00 0.00 35.62 2.57
1193 1647 7.544566 ACCGGTAATAACTATATTGCGAGAATG 59.455 37.037 4.49 0.00 35.62 2.67
1197 1651 8.804743 CAATACCGGTAATAACTATATTGCGAG 58.195 37.037 20.22 0.00 35.62 5.03
1198 1652 8.306038 ACAATACCGGTAATAACTATATTGCGA 58.694 33.333 20.22 0.00 35.62 5.10
1199 1653 8.377681 CACAATACCGGTAATAACTATATTGCG 58.622 37.037 20.22 6.49 35.62 4.85
1200 1654 8.662141 CCACAATACCGGTAATAACTATATTGC 58.338 37.037 20.22 0.00 33.12 3.56
1207 1661 6.151480 CCAAAACCACAATACCGGTAATAACT 59.849 38.462 20.22 0.00 33.17 2.24
1208 1662 6.324042 CCAAAACCACAATACCGGTAATAAC 58.676 40.000 20.22 0.00 33.17 1.89
1210 1664 4.398673 GCCAAAACCACAATACCGGTAATA 59.601 41.667 20.22 0.00 33.17 0.98
1211 1665 3.193903 GCCAAAACCACAATACCGGTAAT 59.806 43.478 20.22 7.55 33.17 1.89
1212 1666 2.557490 GCCAAAACCACAATACCGGTAA 59.443 45.455 20.22 1.92 33.17 2.85
1213 1667 2.161030 GCCAAAACCACAATACCGGTA 58.839 47.619 18.46 18.46 33.17 4.02
1214 1668 0.963225 GCCAAAACCACAATACCGGT 59.037 50.000 13.98 13.98 36.98 5.28
1292 1746 5.050490 ACTCGCAAACATAAATCGATAGCT 58.950 37.500 0.00 0.00 0.00 3.32
1294 1748 6.510746 TGACTCGCAAACATAAATCGATAG 57.489 37.500 0.00 0.00 0.00 2.08
1295 1749 6.699642 TGATGACTCGCAAACATAAATCGATA 59.300 34.615 0.00 0.00 0.00 2.92
1297 1751 4.867608 TGATGACTCGCAAACATAAATCGA 59.132 37.500 0.00 0.00 0.00 3.59
1301 1755 5.643348 ACTGATGATGACTCGCAAACATAAA 59.357 36.000 0.00 0.00 31.25 1.40
1304 1758 3.603532 ACTGATGATGACTCGCAAACAT 58.396 40.909 0.00 0.00 32.86 2.71
1307 1761 3.932710 GGTAACTGATGATGACTCGCAAA 59.067 43.478 0.00 0.00 0.00 3.68
1312 1766 6.491745 TCTGATAGGGTAACTGATGATGACTC 59.508 42.308 0.00 0.00 0.00 3.36
1314 1768 6.491745 TCTCTGATAGGGTAACTGATGATGAC 59.508 42.308 0.00 0.00 0.00 3.06
1325 1779 7.569599 AGTTTTCCTTTCTCTGATAGGGTAA 57.430 36.000 4.67 0.00 32.81 2.85
1341 1795 7.070821 ACTCCATCGGTTATATGTAGTTTTCCT 59.929 37.037 0.00 0.00 0.00 3.36
1344 1798 7.497909 CCAACTCCATCGGTTATATGTAGTTTT 59.502 37.037 0.00 0.00 32.95 2.43
1346 1800 6.522054 CCAACTCCATCGGTTATATGTAGTT 58.478 40.000 0.00 0.00 34.85 2.24
1347 1801 5.510861 GCCAACTCCATCGGTTATATGTAGT 60.511 44.000 0.00 0.00 0.00 2.73
1362 1816 2.299582 CAAATGGACATTGCCAACTCCA 59.700 45.455 7.88 7.88 42.16 3.86
1363 1817 2.562298 TCAAATGGACATTGCCAACTCC 59.438 45.455 0.00 0.00 42.16 3.85
1365 1819 4.091549 AGATCAAATGGACATTGCCAACT 58.908 39.130 0.00 0.00 42.16 3.16
1366 1820 4.082081 TGAGATCAAATGGACATTGCCAAC 60.082 41.667 0.00 0.00 42.16 3.77
1372 1826 6.017605 GCGTAATCTGAGATCAAATGGACATT 60.018 38.462 0.00 0.00 0.00 2.71
1373 1827 5.468072 GCGTAATCTGAGATCAAATGGACAT 59.532 40.000 0.00 0.00 0.00 3.06
1379 1833 5.403766 GTCATCGCGTAATCTGAGATCAAAT 59.596 40.000 5.77 0.00 0.00 2.32
1385 1839 2.021457 TGGTCATCGCGTAATCTGAGA 58.979 47.619 5.77 0.00 0.00 3.27
1388 1842 2.209838 AGTGGTCATCGCGTAATCTG 57.790 50.000 5.77 0.00 0.00 2.90
1396 1850 3.182967 CAGAGTTAGAAGTGGTCATCGC 58.817 50.000 0.00 0.00 0.00 4.58
1397 1851 3.182967 GCAGAGTTAGAAGTGGTCATCG 58.817 50.000 0.00 0.00 0.00 3.84
1476 1930 0.825010 AACTCTGCCAAAGCACCTGG 60.825 55.000 0.00 0.00 46.52 4.45
1532 1986 1.428869 GATCATGCTGGACCCTAGGT 58.571 55.000 8.29 0.00 39.44 3.08
1597 2076 5.689383 TCCACACTCAGAGTAAAATTTGC 57.311 39.130 1.67 0.00 0.00 3.68
1614 2093 0.961019 GCCTTCTTGTTGCATCCACA 59.039 50.000 0.00 0.00 0.00 4.17
1660 2139 5.137551 AGTACCAGCAAACACTAAACCAAT 58.862 37.500 0.00 0.00 0.00 3.16
1718 2197 2.153247 GCGTCGTTTAGTGTCAGAACAG 59.847 50.000 0.00 0.00 35.64 3.16
1734 2213 2.560284 GCATGTATGTATGTGCGTCG 57.440 50.000 0.00 0.00 0.00 5.12
1795 2274 3.211045 ACCACAAAATAGAACTGCGTGT 58.789 40.909 0.00 0.00 0.00 4.49
1843 2322 4.003648 CCATAAGGTCCACAGTTTGACTC 58.996 47.826 0.00 0.00 0.00 3.36
1844 2323 4.021102 CCATAAGGTCCACAGTTTGACT 57.979 45.455 0.00 0.00 0.00 3.41
1892 2372 1.606885 ATCAAAACCGGCAGGGCATG 61.607 55.000 8.08 0.00 43.47 4.06
1917 2397 5.776744 AGACAATTCCTTGATTTTGTGCTC 58.223 37.500 0.00 0.00 36.20 4.26
1937 2417 0.390472 CTCCCTCGAACAGCCAAGAC 60.390 60.000 0.00 0.00 0.00 3.01
1973 2453 4.201763 GCCGATGAGTTGAATTGTCTCTTC 60.202 45.833 0.00 0.00 32.65 2.87
1975 2455 3.265791 GCCGATGAGTTGAATTGTCTCT 58.734 45.455 0.00 0.00 0.00 3.10
1996 2476 5.811399 TCTATTGGATAAAACGCCACTTG 57.189 39.130 0.00 0.00 33.01 3.16
2039 2519 1.945394 CATCAGAGGGCCAAGAATTCG 59.055 52.381 6.18 0.00 0.00 3.34
2057 2537 4.458295 CACACTCTTTCAGATTTCTGGCAT 59.542 41.667 7.68 0.00 43.91 4.40
2237 2717 0.321122 AGCAGCTCTGAAACCCGAAG 60.321 55.000 0.29 0.00 0.00 3.79
2359 4108 4.079253 ACAAGGCTTCCGTTTTCATACAT 58.921 39.130 0.00 0.00 0.00 2.29
2465 4214 1.076549 GAACCTGGCAATGTCCCCA 59.923 57.895 0.00 0.00 0.00 4.96
3159 4920 2.029649 AGCATCTTGAATGCACCAACAC 60.030 45.455 12.12 0.00 46.77 3.32
3305 5066 3.100671 AGAGACAGTACAGGCCTTTAGG 58.899 50.000 0.00 0.00 38.53 2.69
3309 5070 2.310779 TCAGAGACAGTACAGGCCTT 57.689 50.000 0.00 0.00 0.00 4.35
3341 5109 8.960591 CATAGATTTGGACAAACAGAAATAGGT 58.039 33.333 0.00 0.00 32.51 3.08
3342 5110 8.960591 ACATAGATTTGGACAAACAGAAATAGG 58.039 33.333 0.00 0.00 32.51 2.57
3410 5178 5.230942 CAGATAGGGGATAAGCGTAGTTTG 58.769 45.833 0.00 0.00 30.33 2.93
3427 5196 3.937706 CAGTTCAGAACCTTGGCAGATAG 59.062 47.826 9.85 0.00 0.00 2.08
3469 5238 4.361451 GTGAAGGCACAATATCACAAGG 57.639 45.455 0.00 0.00 44.51 3.61
3518 5287 2.289444 ACGGTTCTGATTGTCGAATGGT 60.289 45.455 0.00 0.00 0.00 3.55
3580 5349 9.305555 CCCCATATCTTGAACTCAAATTCATAT 57.694 33.333 0.00 0.00 38.37 1.78
3581 5350 8.281531 ACCCCATATCTTGAACTCAAATTCATA 58.718 33.333 0.00 0.00 38.37 2.15
3582 5351 7.069085 CACCCCATATCTTGAACTCAAATTCAT 59.931 37.037 0.00 0.00 38.37 2.57
3583 5352 6.377996 CACCCCATATCTTGAACTCAAATTCA 59.622 38.462 0.00 0.00 36.80 2.57
3584 5353 6.603201 TCACCCCATATCTTGAACTCAAATTC 59.397 38.462 0.00 0.00 35.15 2.17
3585 5354 6.493166 TCACCCCATATCTTGAACTCAAATT 58.507 36.000 0.00 0.00 35.15 1.82
3586 5355 6.078456 TCACCCCATATCTTGAACTCAAAT 57.922 37.500 0.00 0.00 35.15 2.32
3587 5356 5.512942 TCACCCCATATCTTGAACTCAAA 57.487 39.130 0.00 0.00 35.15 2.69
3604 5373 8.643324 AGTACATCTAGTAGAATTCATTCACCC 58.357 37.037 8.44 0.00 39.23 4.61
3620 5390 3.181490 TGCGGTGCAGTAAGTACATCTAG 60.181 47.826 0.00 0.00 34.11 2.43
3647 5417 4.069304 TCATTAGTTTGTGGAAAGACGGG 58.931 43.478 0.00 0.00 0.00 5.28
3668 5438 4.216257 TGCTTCAAACAGCAGGATTACTTC 59.784 41.667 0.00 0.00 45.14 3.01
3753 5523 3.465122 ACAAGTAAATTTAGCGCGTGG 57.535 42.857 8.43 0.00 0.00 4.94
3754 5524 5.846994 TGTTAACAAGTAAATTTAGCGCGTG 59.153 36.000 8.43 0.00 0.00 5.34
3755 5525 5.988092 TGTTAACAAGTAAATTTAGCGCGT 58.012 33.333 8.43 0.00 0.00 6.01
3756 5526 6.021782 CCATGTTAACAAGTAAATTTAGCGCG 60.022 38.462 13.23 0.00 0.00 6.86
3757 5527 6.804783 ACCATGTTAACAAGTAAATTTAGCGC 59.195 34.615 13.23 0.00 0.00 5.92
3758 5528 8.635124 CAACCATGTTAACAAGTAAATTTAGCG 58.365 33.333 13.23 0.00 0.00 4.26
3776 5546 6.899393 ATTCACAACAATCTACAACCATGT 57.101 33.333 0.00 0.00 43.74 3.21
3791 5561 6.334102 TGTGGTTACCCAATTATTCACAAC 57.666 37.500 0.00 0.00 44.15 3.32
3828 5672 7.443575 ACAGACAGCCAGAAATGTATTCATATC 59.556 37.037 0.00 0.00 33.49 1.63
3836 5680 4.635765 GCATTACAGACAGCCAGAAATGTA 59.364 41.667 0.00 0.00 0.00 2.29
3843 5687 1.020861 TGCGCATTACAGACAGCCAG 61.021 55.000 5.66 0.00 0.00 4.85
3860 5704 7.663081 TGTCCATGGATCTAATCTAAATTCTGC 59.337 37.037 19.62 0.00 0.00 4.26
3863 5707 9.566432 AAGTGTCCATGGATCTAATCTAAATTC 57.434 33.333 19.62 0.00 0.00 2.17
3887 5731 8.993121 TGCTTGTTTTAGAGTTCTATTCTGAAG 58.007 33.333 0.00 0.00 0.00 3.02
3980 7619 8.959676 AATATAAAAGTGTTTTCAACCCCCTA 57.040 30.769 0.00 0.00 34.19 3.53
4030 7669 6.248569 TGTTAGGGACTCCTGGAATTATTC 57.751 41.667 0.00 0.00 44.61 1.75
4038 7677 1.003233 GTGGTTGTTAGGGACTCCTGG 59.997 57.143 0.00 0.00 44.61 4.45
4218 7872 3.642705 TGTGAGGAAGATAATCATCGCG 58.357 45.455 0.00 0.00 41.98 5.87
4233 7887 3.640498 TGGCTTCTGATCTCTATGTGAGG 59.360 47.826 0.00 0.00 42.86 3.86
4238 7892 8.772705 GTCTTAATTTGGCTTCTGATCTCTATG 58.227 37.037 0.00 0.00 0.00 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.