Multiple sequence alignment - TraesCS6D01G072000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G072000 chr6D 100.000 3109 0 0 1 3109 36583105 36579997 0.000000e+00 5742
1 TraesCS6D01G072000 chr6A 88.512 2681 214 39 484 3109 48169979 48167338 0.000000e+00 3158
2 TraesCS6D01G072000 chr6A 90.678 118 7 4 1 117 48170554 48170440 1.490000e-33 154
3 TraesCS6D01G072000 chr6B 87.806 1796 149 33 484 2266 84849708 84847970 0.000000e+00 2039
4 TraesCS6D01G072000 chr6B 84.717 530 74 7 2585 3109 474801559 474802086 9.880000e-145 523
5 TraesCS6D01G072000 chr3D 85.393 534 68 8 2584 3109 400675617 400675086 2.110000e-151 545
6 TraesCS6D01G072000 chr5D 85.094 530 73 6 2585 3109 412624304 412624832 1.270000e-148 536
7 TraesCS6D01G072000 chr5D 85.094 530 71 8 2585 3109 257031797 257031271 4.560000e-148 534
8 TraesCS6D01G072000 chr7D 84.962 532 70 9 2584 3109 116895729 116895202 5.900000e-147 531
9 TraesCS6D01G072000 chr7D 78.440 436 81 6 1301 1734 379246438 379246862 3.950000e-69 272
10 TraesCS6D01G072000 chr7B 84.906 530 73 4 2583 3109 536099466 536098941 2.120000e-146 529
11 TraesCS6D01G072000 chr7B 77.602 442 86 6 1295 1734 374558825 374559255 3.980000e-64 255
12 TraesCS6D01G072000 chr7B 92.308 156 12 0 1958 2113 374559557 374559712 4.040000e-54 222
13 TraesCS6D01G072000 chr2B 84.860 535 66 13 2583 3109 647324283 647323756 2.750000e-145 525
14 TraesCS6D01G072000 chr1D 84.644 534 72 10 2584 3109 220299363 220298832 9.880000e-145 523
15 TraesCS6D01G072000 chr7A 78.281 442 83 6 1295 1734 427612237 427612667 3.950000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G072000 chr6D 36579997 36583105 3108 True 5742.0 5742 100.000 1 3109 1 chr6D.!!$R1 3108
1 TraesCS6D01G072000 chr6A 48167338 48170554 3216 True 1656.0 3158 89.595 1 3109 2 chr6A.!!$R1 3108
2 TraesCS6D01G072000 chr6B 84847970 84849708 1738 True 2039.0 2039 87.806 484 2266 1 chr6B.!!$R1 1782
3 TraesCS6D01G072000 chr6B 474801559 474802086 527 False 523.0 523 84.717 2585 3109 1 chr6B.!!$F1 524
4 TraesCS6D01G072000 chr3D 400675086 400675617 531 True 545.0 545 85.393 2584 3109 1 chr3D.!!$R1 525
5 TraesCS6D01G072000 chr5D 412624304 412624832 528 False 536.0 536 85.094 2585 3109 1 chr5D.!!$F1 524
6 TraesCS6D01G072000 chr5D 257031271 257031797 526 True 534.0 534 85.094 2585 3109 1 chr5D.!!$R1 524
7 TraesCS6D01G072000 chr7D 116895202 116895729 527 True 531.0 531 84.962 2584 3109 1 chr7D.!!$R1 525
8 TraesCS6D01G072000 chr7B 536098941 536099466 525 True 529.0 529 84.906 2583 3109 1 chr7B.!!$R1 526
9 TraesCS6D01G072000 chr7B 374558825 374559712 887 False 238.5 255 84.955 1295 2113 2 chr7B.!!$F1 818
10 TraesCS6D01G072000 chr2B 647323756 647324283 527 True 525.0 525 84.860 2583 3109 1 chr2B.!!$R1 526
11 TraesCS6D01G072000 chr1D 220298832 220299363 531 True 523.0 523 84.644 2584 3109 1 chr1D.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 181 0.035458 GACACACTAGGCTTGCCTGT 59.965 55.0 23.03 15.56 0.0 4.00 F
621 965 0.036732 TGGTGCGAGAATTTCCTGCT 59.963 50.0 10.63 0.00 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 2136 0.952984 GGCAGTTCCAGTGAGTGAGC 60.953 60.0 0.0 0.0 34.01 4.26 R
2539 3037 0.320683 CAGAGCCACAATCGTCACCA 60.321 55.0 0.0 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.426522 ACAAACAGATCCATCGGTGTG 58.573 47.619 8.10 8.10 43.17 3.82
75 76 9.639601 TTAGCATGTTTGGATTATACTAGATCG 57.360 33.333 0.00 0.00 0.00 3.69
76 77 7.671302 AGCATGTTTGGATTATACTAGATCGT 58.329 34.615 0.00 0.00 0.00 3.73
77 78 7.600375 AGCATGTTTGGATTATACTAGATCGTG 59.400 37.037 0.00 0.00 0.00 4.35
101 103 3.668191 CGTCCATTCAAAATCCAACGTTG 59.332 43.478 21.47 21.47 0.00 4.10
104 106 4.520874 TCCATTCAAAATCCAACGTTGCTA 59.479 37.500 22.93 13.00 0.00 3.49
105 107 5.184864 TCCATTCAAAATCCAACGTTGCTAT 59.815 36.000 22.93 14.70 0.00 2.97
112 114 1.240641 CCAACGTTGCTATGTGCCCA 61.241 55.000 22.93 0.00 42.00 5.36
122 159 2.674852 GCTATGTGCCCATATGATCACG 59.325 50.000 3.65 1.29 33.18 4.35
124 161 2.998316 TGTGCCCATATGATCACGAA 57.002 45.000 3.65 0.00 32.48 3.85
126 163 2.433970 TGTGCCCATATGATCACGAAGA 59.566 45.455 3.65 0.00 32.48 2.87
140 177 1.071605 CGAAGACACACTAGGCTTGC 58.928 55.000 0.00 0.00 0.00 4.01
143 180 0.322975 AGACACACTAGGCTTGCCTG 59.677 55.000 23.03 14.98 0.00 4.85
144 181 0.035458 GACACACTAGGCTTGCCTGT 59.965 55.000 23.03 15.56 0.00 4.00
145 182 1.275291 GACACACTAGGCTTGCCTGTA 59.725 52.381 23.03 4.24 0.00 2.74
153 190 0.527565 GGCTTGCCTGTAACACATGG 59.472 55.000 4.11 0.00 0.00 3.66
154 191 1.533625 GCTTGCCTGTAACACATGGA 58.466 50.000 0.00 0.00 0.00 3.41
158 195 4.737054 CTTGCCTGTAACACATGGATTTC 58.263 43.478 0.00 0.00 0.00 2.17
159 196 3.088532 TGCCTGTAACACATGGATTTCC 58.911 45.455 0.00 0.00 0.00 3.13
161 198 2.097466 CCTGTAACACATGGATTTCCGC 59.903 50.000 0.00 0.00 39.43 5.54
165 202 3.742433 AACACATGGATTTCCGCAAAA 57.258 38.095 0.00 0.00 39.43 2.44
166 203 3.959535 ACACATGGATTTCCGCAAAAT 57.040 38.095 0.00 0.00 40.34 1.82
175 212 5.412526 GATTTCCGCAAAATCGTATACCA 57.587 39.130 5.96 0.00 42.78 3.25
177 214 5.624344 TTTCCGCAAAATCGTATACCAAA 57.376 34.783 0.00 0.00 0.00 3.28
179 521 5.821516 TCCGCAAAATCGTATACCAAAAT 57.178 34.783 0.00 0.00 0.00 1.82
186 528 9.575783 GCAAAATCGTATACCAAAATTTTCCTA 57.424 29.630 0.00 0.00 29.54 2.94
209 551 9.814899 CCTATATATGGAAATCTTGTAGCTCTG 57.185 37.037 0.00 0.00 0.00 3.35
216 558 7.268586 TGGAAATCTTGTAGCTCTGATAACTC 58.731 38.462 0.00 0.00 0.00 3.01
221 563 5.594725 TCTTGTAGCTCTGATAACTCCGAAT 59.405 40.000 0.00 0.00 0.00 3.34
222 564 5.440234 TGTAGCTCTGATAACTCCGAATC 57.560 43.478 0.00 0.00 0.00 2.52
223 565 4.278669 TGTAGCTCTGATAACTCCGAATCC 59.721 45.833 0.00 0.00 0.00 3.01
224 566 2.630580 AGCTCTGATAACTCCGAATCCC 59.369 50.000 0.00 0.00 0.00 3.85
225 567 2.365617 GCTCTGATAACTCCGAATCCCA 59.634 50.000 0.00 0.00 0.00 4.37
226 568 3.553922 GCTCTGATAACTCCGAATCCCAG 60.554 52.174 0.00 0.00 0.00 4.45
228 570 4.286707 TCTGATAACTCCGAATCCCAGAA 58.713 43.478 0.00 0.00 0.00 3.02
230 572 4.766375 TGATAACTCCGAATCCCAGAAAC 58.234 43.478 0.00 0.00 0.00 2.78
231 573 4.224147 TGATAACTCCGAATCCCAGAAACA 59.776 41.667 0.00 0.00 0.00 2.83
233 575 3.502123 ACTCCGAATCCCAGAAACAAA 57.498 42.857 0.00 0.00 0.00 2.83
234 576 3.146847 ACTCCGAATCCCAGAAACAAAC 58.853 45.455 0.00 0.00 0.00 2.93
236 578 2.882137 TCCGAATCCCAGAAACAAACAC 59.118 45.455 0.00 0.00 0.00 3.32
237 579 2.621055 CCGAATCCCAGAAACAAACACA 59.379 45.455 0.00 0.00 0.00 3.72
238 580 3.067461 CCGAATCCCAGAAACAAACACAA 59.933 43.478 0.00 0.00 0.00 3.33
239 581 4.440802 CCGAATCCCAGAAACAAACACAAA 60.441 41.667 0.00 0.00 0.00 2.83
240 582 4.739716 CGAATCCCAGAAACAAACACAAAG 59.260 41.667 0.00 0.00 0.00 2.77
241 583 5.660460 GAATCCCAGAAACAAACACAAAGT 58.340 37.500 0.00 0.00 0.00 2.66
242 584 4.448537 TCCCAGAAACAAACACAAAGTG 57.551 40.909 0.00 0.00 39.75 3.16
254 596 2.924903 CACAAAGTGTGCATAGCAGTG 58.075 47.619 0.00 0.00 41.89 3.66
255 597 2.549329 CACAAAGTGTGCATAGCAGTGA 59.451 45.455 0.00 0.00 41.89 3.41
256 598 3.189910 CACAAAGTGTGCATAGCAGTGAT 59.810 43.478 0.00 0.00 41.89 3.06
257 599 3.189910 ACAAAGTGTGCATAGCAGTGATG 59.810 43.478 0.00 0.00 40.08 3.07
258 600 2.034104 AGTGTGCATAGCAGTGATGG 57.966 50.000 0.00 0.00 40.08 3.51
259 601 1.019673 GTGTGCATAGCAGTGATGGG 58.980 55.000 0.00 0.00 40.08 4.00
260 602 0.749091 TGTGCATAGCAGTGATGGGC 60.749 55.000 0.00 0.00 40.08 5.36
261 603 0.465097 GTGCATAGCAGTGATGGGCT 60.465 55.000 0.00 0.00 40.08 5.19
262 604 0.464916 TGCATAGCAGTGATGGGCTG 60.465 55.000 0.00 0.00 41.25 4.85
263 605 0.179037 GCATAGCAGTGATGGGCTGA 60.179 55.000 0.00 0.00 41.25 4.26
264 606 1.544982 GCATAGCAGTGATGGGCTGAT 60.545 52.381 0.00 0.00 41.25 2.90
265 607 2.152016 CATAGCAGTGATGGGCTGATG 58.848 52.381 0.00 0.00 41.25 3.07
266 608 1.499368 TAGCAGTGATGGGCTGATGA 58.501 50.000 0.00 0.00 41.25 2.92
267 609 0.844660 AGCAGTGATGGGCTGATGAT 59.155 50.000 0.00 0.00 39.30 2.45
268 610 1.202782 AGCAGTGATGGGCTGATGATC 60.203 52.381 0.00 0.00 39.30 2.92
269 611 1.476291 GCAGTGATGGGCTGATGATCA 60.476 52.381 0.00 0.00 36.12 2.92
270 612 2.927028 CAGTGATGGGCTGATGATCAA 58.073 47.619 0.00 0.00 36.12 2.57
271 613 3.487372 CAGTGATGGGCTGATGATCAAT 58.513 45.455 0.00 0.00 36.12 2.57
272 614 3.502595 CAGTGATGGGCTGATGATCAATC 59.497 47.826 0.00 0.00 36.12 2.67
273 615 3.394940 AGTGATGGGCTGATGATCAATCT 59.605 43.478 0.00 0.00 36.15 2.40
274 616 4.141228 AGTGATGGGCTGATGATCAATCTT 60.141 41.667 0.00 0.00 36.15 2.40
275 617 5.072736 AGTGATGGGCTGATGATCAATCTTA 59.927 40.000 0.00 0.00 36.15 2.10
276 618 5.766670 GTGATGGGCTGATGATCAATCTTAA 59.233 40.000 0.00 0.00 36.15 1.85
277 619 6.263842 GTGATGGGCTGATGATCAATCTTAAA 59.736 38.462 0.00 0.00 36.15 1.52
278 620 6.489022 TGATGGGCTGATGATCAATCTTAAAG 59.511 38.462 0.00 0.00 36.15 1.85
279 621 6.005066 TGGGCTGATGATCAATCTTAAAGA 57.995 37.500 0.00 0.00 36.15 2.52
280 622 6.060136 TGGGCTGATGATCAATCTTAAAGAG 58.940 40.000 0.00 0.00 36.15 2.85
281 623 6.126681 TGGGCTGATGATCAATCTTAAAGAGA 60.127 38.462 0.00 0.00 39.13 3.10
282 624 6.427547 GGGCTGATGATCAATCTTAAAGAGAG 59.572 42.308 0.00 0.00 37.93 3.20
283 625 6.991531 GGCTGATGATCAATCTTAAAGAGAGT 59.008 38.462 0.00 0.00 37.93 3.24
284 626 7.171337 GGCTGATGATCAATCTTAAAGAGAGTC 59.829 40.741 0.00 0.00 37.93 3.36
285 627 7.710044 GCTGATGATCAATCTTAAAGAGAGTCA 59.290 37.037 0.00 0.00 37.93 3.41
286 628 8.939201 TGATGATCAATCTTAAAGAGAGTCAC 57.061 34.615 0.00 0.00 37.93 3.67
287 629 8.534496 TGATGATCAATCTTAAAGAGAGTCACA 58.466 33.333 0.00 0.00 37.93 3.58
288 630 9.376075 GATGATCAATCTTAAAGAGAGTCACAA 57.624 33.333 0.00 0.00 37.93 3.33
289 631 8.539770 TGATCAATCTTAAAGAGAGTCACAAC 57.460 34.615 0.00 0.00 37.93 3.32
290 632 7.604164 TGATCAATCTTAAAGAGAGTCACAACC 59.396 37.037 0.00 0.00 37.93 3.77
291 633 6.826668 TCAATCTTAAAGAGAGTCACAACCA 58.173 36.000 0.00 0.00 37.93 3.67
292 634 7.453393 TCAATCTTAAAGAGAGTCACAACCAT 58.547 34.615 0.00 0.00 37.93 3.55
293 635 7.939039 TCAATCTTAAAGAGAGTCACAACCATT 59.061 33.333 0.00 0.00 37.93 3.16
294 636 8.571336 CAATCTTAAAGAGAGTCACAACCATTT 58.429 33.333 0.00 0.00 37.93 2.32
295 637 7.496529 TCTTAAAGAGAGTCACAACCATTTG 57.503 36.000 0.00 0.00 38.83 2.32
296 638 7.279615 TCTTAAAGAGAGTCACAACCATTTGA 58.720 34.615 0.00 0.00 36.48 2.69
297 639 7.939039 TCTTAAAGAGAGTCACAACCATTTGAT 59.061 33.333 0.00 0.00 36.48 2.57
298 640 6.966534 AAAGAGAGTCACAACCATTTGATT 57.033 33.333 0.00 0.00 36.48 2.57
299 641 6.566197 AAGAGAGTCACAACCATTTGATTC 57.434 37.500 0.00 0.00 36.48 2.52
300 642 5.006386 AGAGAGTCACAACCATTTGATTCC 58.994 41.667 0.00 0.00 36.48 3.01
301 643 4.728772 AGAGTCACAACCATTTGATTCCA 58.271 39.130 0.00 0.00 36.48 3.53
302 644 4.520492 AGAGTCACAACCATTTGATTCCAC 59.480 41.667 0.00 0.00 36.48 4.02
303 645 4.214310 AGTCACAACCATTTGATTCCACA 58.786 39.130 0.00 0.00 36.48 4.17
304 646 4.279169 AGTCACAACCATTTGATTCCACAG 59.721 41.667 0.00 0.00 36.48 3.66
305 647 4.037923 GTCACAACCATTTGATTCCACAGT 59.962 41.667 0.00 0.00 36.48 3.55
306 648 4.037803 TCACAACCATTTGATTCCACAGTG 59.962 41.667 0.00 0.00 36.48 3.66
307 649 4.037803 CACAACCATTTGATTCCACAGTGA 59.962 41.667 0.62 0.00 36.48 3.41
308 650 4.834496 ACAACCATTTGATTCCACAGTGAT 59.166 37.500 0.62 0.00 36.48 3.06
309 651 5.165676 CAACCATTTGATTCCACAGTGATG 58.834 41.667 0.62 0.00 34.24 3.07
310 652 4.410099 ACCATTTGATTCCACAGTGATGT 58.590 39.130 0.62 0.00 0.00 3.06
311 653 4.219070 ACCATTTGATTCCACAGTGATGTG 59.781 41.667 0.62 1.37 39.37 3.21
312 654 4.219070 CCATTTGATTCCACAGTGATGTGT 59.781 41.667 0.62 0.00 38.07 3.72
313 655 5.279106 CCATTTGATTCCACAGTGATGTGTT 60.279 40.000 0.62 0.00 38.07 3.32
314 656 4.834357 TTGATTCCACAGTGATGTGTTG 57.166 40.909 0.62 0.00 38.07 3.33
315 657 3.819368 TGATTCCACAGTGATGTGTTGT 58.181 40.909 0.62 0.00 38.07 3.32
316 658 3.814842 TGATTCCACAGTGATGTGTTGTC 59.185 43.478 0.62 3.34 38.07 3.18
317 659 3.558931 TTCCACAGTGATGTGTTGTCT 57.441 42.857 0.62 0.00 38.07 3.41
318 660 3.558931 TCCACAGTGATGTGTTGTCTT 57.441 42.857 0.62 0.00 38.07 3.01
319 661 3.205338 TCCACAGTGATGTGTTGTCTTG 58.795 45.455 0.62 0.00 38.07 3.02
320 662 2.287188 CCACAGTGATGTGTTGTCTTGC 60.287 50.000 0.62 0.00 38.07 4.01
321 663 2.615447 CACAGTGATGTGTTGTCTTGCT 59.385 45.455 0.00 0.00 35.25 3.91
322 664 3.809279 CACAGTGATGTGTTGTCTTGCTA 59.191 43.478 0.00 0.00 35.25 3.49
323 665 4.060900 ACAGTGATGTGTTGTCTTGCTAG 58.939 43.478 0.00 0.00 0.00 3.42
324 666 4.202253 ACAGTGATGTGTTGTCTTGCTAGA 60.202 41.667 0.00 0.00 0.00 2.43
325 667 4.751600 CAGTGATGTGTTGTCTTGCTAGAA 59.248 41.667 0.00 0.00 30.65 2.10
326 668 5.237127 CAGTGATGTGTTGTCTTGCTAGAAA 59.763 40.000 0.00 0.00 30.65 2.52
327 669 5.822519 AGTGATGTGTTGTCTTGCTAGAAAA 59.177 36.000 0.00 0.00 30.65 2.29
328 670 6.318648 AGTGATGTGTTGTCTTGCTAGAAAAA 59.681 34.615 2.11 0.00 29.42 1.94
329 671 6.414987 GTGATGTGTTGTCTTGCTAGAAAAAC 59.585 38.462 14.19 14.19 29.42 2.43
330 672 5.243426 TGTGTTGTCTTGCTAGAAAAACC 57.757 39.130 16.75 11.32 29.42 3.27
331 673 4.201871 TGTGTTGTCTTGCTAGAAAAACCG 60.202 41.667 16.75 0.00 29.42 4.44
332 674 3.942748 TGTTGTCTTGCTAGAAAAACCGT 59.057 39.130 16.75 0.00 29.42 4.83
333 675 4.201871 TGTTGTCTTGCTAGAAAAACCGTG 60.202 41.667 16.75 0.00 29.42 4.94
334 676 3.537580 TGTCTTGCTAGAAAAACCGTGT 58.462 40.909 0.00 0.00 30.65 4.49
335 677 3.311322 TGTCTTGCTAGAAAAACCGTGTG 59.689 43.478 0.00 0.00 30.65 3.82
336 678 2.289547 TCTTGCTAGAAAAACCGTGTGC 59.710 45.455 0.00 0.00 0.00 4.57
337 679 0.948678 TGCTAGAAAAACCGTGTGCC 59.051 50.000 0.00 0.00 0.00 5.01
338 680 0.948678 GCTAGAAAAACCGTGTGCCA 59.051 50.000 0.00 0.00 0.00 4.92
339 681 1.335496 GCTAGAAAAACCGTGTGCCAA 59.665 47.619 0.00 0.00 0.00 4.52
340 682 2.223618 GCTAGAAAAACCGTGTGCCAAA 60.224 45.455 0.00 0.00 0.00 3.28
341 683 3.735514 GCTAGAAAAACCGTGTGCCAAAA 60.736 43.478 0.00 0.00 0.00 2.44
342 684 2.887337 AGAAAAACCGTGTGCCAAAAG 58.113 42.857 0.00 0.00 0.00 2.27
343 685 2.232696 AGAAAAACCGTGTGCCAAAAGT 59.767 40.909 0.00 0.00 0.00 2.66
344 686 2.753055 AAAACCGTGTGCCAAAAGTT 57.247 40.000 0.00 0.00 0.00 2.66
345 687 2.003196 AAACCGTGTGCCAAAAGTTG 57.997 45.000 0.00 0.00 0.00 3.16
346 688 1.178276 AACCGTGTGCCAAAAGTTGA 58.822 45.000 0.00 0.00 0.00 3.18
347 689 0.738389 ACCGTGTGCCAAAAGTTGAG 59.262 50.000 0.00 0.00 0.00 3.02
348 690 0.738389 CCGTGTGCCAAAAGTTGAGT 59.262 50.000 0.00 0.00 0.00 3.41
349 691 1.944024 CCGTGTGCCAAAAGTTGAGTA 59.056 47.619 0.00 0.00 0.00 2.59
350 692 2.286772 CCGTGTGCCAAAAGTTGAGTAC 60.287 50.000 0.00 0.00 0.00 2.73
351 693 2.598907 CGTGTGCCAAAAGTTGAGTACG 60.599 50.000 0.00 0.00 0.00 3.67
352 694 2.353579 GTGTGCCAAAAGTTGAGTACGT 59.646 45.455 0.00 0.00 0.00 3.57
353 695 2.353269 TGTGCCAAAAGTTGAGTACGTG 59.647 45.455 0.00 0.00 0.00 4.49
354 696 2.353579 GTGCCAAAAGTTGAGTACGTGT 59.646 45.455 0.00 0.00 0.00 4.49
355 697 3.556775 GTGCCAAAAGTTGAGTACGTGTA 59.443 43.478 0.00 0.00 0.00 2.90
356 698 4.034279 GTGCCAAAAGTTGAGTACGTGTAA 59.966 41.667 0.00 0.00 0.00 2.41
357 699 4.034279 TGCCAAAAGTTGAGTACGTGTAAC 59.966 41.667 0.00 0.00 0.00 2.50
358 700 4.553351 GCCAAAAGTTGAGTACGTGTAACC 60.553 45.833 0.00 0.00 0.00 2.85
359 701 4.812626 CCAAAAGTTGAGTACGTGTAACCT 59.187 41.667 0.00 0.00 0.00 3.50
360 702 5.050567 CCAAAAGTTGAGTACGTGTAACCTC 60.051 44.000 0.00 0.00 0.00 3.85
361 703 5.526506 AAAGTTGAGTACGTGTAACCTCT 57.473 39.130 0.00 0.00 0.00 3.69
362 704 4.500603 AGTTGAGTACGTGTAACCTCTG 57.499 45.455 0.00 0.00 0.00 3.35
363 705 2.985139 GTTGAGTACGTGTAACCTCTGC 59.015 50.000 0.00 0.00 0.00 4.26
364 706 2.232399 TGAGTACGTGTAACCTCTGCA 58.768 47.619 0.00 0.00 0.00 4.41
365 707 2.624364 TGAGTACGTGTAACCTCTGCAA 59.376 45.455 0.00 0.00 0.00 4.08
366 708 3.068448 TGAGTACGTGTAACCTCTGCAAA 59.932 43.478 0.00 0.00 0.00 3.68
367 709 4.053295 GAGTACGTGTAACCTCTGCAAAA 58.947 43.478 0.00 0.00 0.00 2.44
368 710 4.444536 AGTACGTGTAACCTCTGCAAAAA 58.555 39.130 0.00 0.00 0.00 1.94
369 711 3.963383 ACGTGTAACCTCTGCAAAAAG 57.037 42.857 0.00 0.00 0.00 2.27
370 712 3.537580 ACGTGTAACCTCTGCAAAAAGA 58.462 40.909 0.00 0.00 0.00 2.52
371 713 3.942748 ACGTGTAACCTCTGCAAAAAGAA 59.057 39.130 0.00 0.00 0.00 2.52
372 714 4.035208 ACGTGTAACCTCTGCAAAAAGAAG 59.965 41.667 0.00 0.00 0.00 2.85
373 715 4.272504 CGTGTAACCTCTGCAAAAAGAAGA 59.727 41.667 0.00 0.00 0.00 2.87
381 723 5.348418 TCTGCAAAAAGAAGAGACGAATG 57.652 39.130 0.00 0.00 0.00 2.67
382 724 5.056480 TCTGCAAAAAGAAGAGACGAATGA 58.944 37.500 0.00 0.00 0.00 2.57
383 725 5.050091 TCTGCAAAAAGAAGAGACGAATGAC 60.050 40.000 0.00 0.00 0.00 3.06
384 726 4.816385 TGCAAAAAGAAGAGACGAATGACT 59.184 37.500 0.00 0.00 0.00 3.41
385 727 5.989168 TGCAAAAAGAAGAGACGAATGACTA 59.011 36.000 0.00 0.00 0.00 2.59
386 728 6.481976 TGCAAAAAGAAGAGACGAATGACTAA 59.518 34.615 0.00 0.00 0.00 2.24
387 729 7.012358 GCAAAAAGAAGAGACGAATGACTAAG 58.988 38.462 0.00 0.00 0.00 2.18
388 730 6.713792 AAAAGAAGAGACGAATGACTAAGC 57.286 37.500 0.00 0.00 0.00 3.09
389 731 5.652994 AAGAAGAGACGAATGACTAAGCT 57.347 39.130 0.00 0.00 0.00 3.74
390 732 6.761099 AAGAAGAGACGAATGACTAAGCTA 57.239 37.500 0.00 0.00 0.00 3.32
391 733 6.371809 AGAAGAGACGAATGACTAAGCTAG 57.628 41.667 0.00 0.00 0.00 3.42
392 734 4.561735 AGAGACGAATGACTAAGCTAGC 57.438 45.455 6.62 6.62 0.00 3.42
393 735 3.948473 AGAGACGAATGACTAAGCTAGCA 59.052 43.478 18.83 0.00 0.00 3.49
394 736 4.399618 AGAGACGAATGACTAAGCTAGCAA 59.600 41.667 18.83 3.32 0.00 3.91
395 737 4.425520 AGACGAATGACTAAGCTAGCAAC 58.574 43.478 18.83 3.75 0.00 4.17
396 738 4.158764 AGACGAATGACTAAGCTAGCAACT 59.841 41.667 18.83 3.21 0.00 3.16
397 739 5.357314 AGACGAATGACTAAGCTAGCAACTA 59.643 40.000 18.83 4.31 0.00 2.24
398 740 5.962433 ACGAATGACTAAGCTAGCAACTAA 58.038 37.500 18.83 0.00 0.00 2.24
399 741 6.395629 ACGAATGACTAAGCTAGCAACTAAA 58.604 36.000 18.83 0.00 0.00 1.85
400 742 7.042335 ACGAATGACTAAGCTAGCAACTAAAT 58.958 34.615 18.83 0.70 0.00 1.40
401 743 7.549488 ACGAATGACTAAGCTAGCAACTAAATT 59.451 33.333 18.83 9.67 0.00 1.82
402 744 8.391106 CGAATGACTAAGCTAGCAACTAAATTT 58.609 33.333 18.83 1.96 0.00 1.82
403 745 9.495754 GAATGACTAAGCTAGCAACTAAATTTG 57.504 33.333 18.83 4.13 0.00 2.32
404 746 8.792830 ATGACTAAGCTAGCAACTAAATTTGA 57.207 30.769 18.83 0.00 0.00 2.69
405 747 8.256611 TGACTAAGCTAGCAACTAAATTTGAG 57.743 34.615 18.83 0.00 0.00 3.02
406 748 7.878127 TGACTAAGCTAGCAACTAAATTTGAGT 59.122 33.333 18.83 0.68 0.00 3.41
407 749 8.034058 ACTAAGCTAGCAACTAAATTTGAGTG 57.966 34.615 18.83 0.00 0.00 3.51
408 750 5.302357 AGCTAGCAACTAAATTTGAGTGC 57.698 39.130 18.83 7.26 0.00 4.40
409 751 4.761739 AGCTAGCAACTAAATTTGAGTGCA 59.238 37.500 18.83 0.00 0.00 4.57
410 752 4.853743 GCTAGCAACTAAATTTGAGTGCAC 59.146 41.667 9.40 9.40 0.00 4.57
411 753 3.888934 AGCAACTAAATTTGAGTGCACG 58.111 40.909 12.01 0.00 0.00 5.34
412 754 2.405025 GCAACTAAATTTGAGTGCACGC 59.595 45.455 14.25 14.25 0.00 5.34
413 755 3.626977 CAACTAAATTTGAGTGCACGCA 58.373 40.909 19.95 19.95 0.00 5.24
414 756 4.229096 CAACTAAATTTGAGTGCACGCAT 58.771 39.130 24.15 11.66 0.00 4.73
415 757 4.083581 ACTAAATTTGAGTGCACGCATC 57.916 40.909 24.15 10.83 0.00 3.91
416 758 3.753272 ACTAAATTTGAGTGCACGCATCT 59.247 39.130 24.15 11.47 0.00 2.90
417 759 2.624316 AATTTGAGTGCACGCATCTG 57.376 45.000 24.15 0.00 0.00 2.90
418 760 1.527034 ATTTGAGTGCACGCATCTGT 58.473 45.000 24.15 7.78 0.00 3.41
419 761 1.308047 TTTGAGTGCACGCATCTGTT 58.692 45.000 24.15 0.00 0.00 3.16
420 762 1.308047 TTGAGTGCACGCATCTGTTT 58.692 45.000 24.15 0.00 0.00 2.83
421 763 1.308047 TGAGTGCACGCATCTGTTTT 58.692 45.000 19.95 0.00 0.00 2.43
422 764 1.675483 TGAGTGCACGCATCTGTTTTT 59.325 42.857 19.95 0.00 0.00 1.94
423 765 2.046313 GAGTGCACGCATCTGTTTTTG 58.954 47.619 16.26 0.00 0.00 2.44
424 766 0.503961 GTGCACGCATCTGTTTTTGC 59.496 50.000 0.00 0.00 35.50 3.68
425 767 0.385029 TGCACGCATCTGTTTTTGCT 59.615 45.000 0.00 0.00 36.71 3.91
426 768 1.055338 GCACGCATCTGTTTTTGCTC 58.945 50.000 0.00 0.00 36.71 4.26
427 769 1.600164 GCACGCATCTGTTTTTGCTCA 60.600 47.619 0.00 0.00 36.71 4.26
428 770 2.046313 CACGCATCTGTTTTTGCTCAC 58.954 47.619 0.00 0.00 36.71 3.51
429 771 1.001378 ACGCATCTGTTTTTGCTCACC 60.001 47.619 0.00 0.00 36.71 4.02
430 772 1.267806 CGCATCTGTTTTTGCTCACCT 59.732 47.619 0.00 0.00 36.71 4.00
431 773 2.483877 CGCATCTGTTTTTGCTCACCTA 59.516 45.455 0.00 0.00 36.71 3.08
432 774 3.127548 CGCATCTGTTTTTGCTCACCTAT 59.872 43.478 0.00 0.00 36.71 2.57
433 775 4.332543 CGCATCTGTTTTTGCTCACCTATA 59.667 41.667 0.00 0.00 36.71 1.31
434 776 5.573146 GCATCTGTTTTTGCTCACCTATAC 58.427 41.667 0.00 0.00 35.95 1.47
435 777 5.355350 GCATCTGTTTTTGCTCACCTATACT 59.645 40.000 0.00 0.00 35.95 2.12
436 778 6.457528 GCATCTGTTTTTGCTCACCTATACTC 60.458 42.308 0.00 0.00 35.95 2.59
437 779 6.109156 TCTGTTTTTGCTCACCTATACTCA 57.891 37.500 0.00 0.00 0.00 3.41
438 780 6.530120 TCTGTTTTTGCTCACCTATACTCAA 58.470 36.000 0.00 0.00 0.00 3.02
439 781 6.650807 TCTGTTTTTGCTCACCTATACTCAAG 59.349 38.462 0.00 0.00 0.00 3.02
440 782 6.296026 TGTTTTTGCTCACCTATACTCAAGT 58.704 36.000 0.00 0.00 0.00 3.16
441 783 6.770785 TGTTTTTGCTCACCTATACTCAAGTT 59.229 34.615 0.00 0.00 0.00 2.66
442 784 7.284489 TGTTTTTGCTCACCTATACTCAAGTTT 59.716 33.333 0.00 0.00 0.00 2.66
443 785 7.435068 TTTTGCTCACCTATACTCAAGTTTC 57.565 36.000 0.00 0.00 0.00 2.78
444 786 4.744570 TGCTCACCTATACTCAAGTTTCG 58.255 43.478 0.00 0.00 0.00 3.46
445 787 4.219944 TGCTCACCTATACTCAAGTTTCGT 59.780 41.667 0.00 0.00 0.00 3.85
446 788 5.416639 TGCTCACCTATACTCAAGTTTCGTA 59.583 40.000 0.00 0.00 0.00 3.43
447 789 5.742926 GCTCACCTATACTCAAGTTTCGTAC 59.257 44.000 0.00 0.00 0.00 3.67
448 790 6.624423 GCTCACCTATACTCAAGTTTCGTACA 60.624 42.308 0.00 0.00 0.00 2.90
449 791 7.218228 TCACCTATACTCAAGTTTCGTACAA 57.782 36.000 0.00 0.00 0.00 2.41
450 792 7.660112 TCACCTATACTCAAGTTTCGTACAAA 58.340 34.615 0.00 0.00 0.00 2.83
451 793 8.308931 TCACCTATACTCAAGTTTCGTACAAAT 58.691 33.333 0.00 0.00 0.00 2.32
452 794 9.577110 CACCTATACTCAAGTTTCGTACAAATA 57.423 33.333 0.00 0.00 0.00 1.40
459 801 9.314321 ACTCAAGTTTCGTACAAATATATCCTG 57.686 33.333 0.00 0.00 0.00 3.86
460 802 9.529325 CTCAAGTTTCGTACAAATATATCCTGA 57.471 33.333 0.00 0.00 0.00 3.86
463 805 8.311650 AGTTTCGTACAAATATATCCTGATGC 57.688 34.615 0.00 0.00 0.00 3.91
464 806 8.150945 AGTTTCGTACAAATATATCCTGATGCT 58.849 33.333 0.00 0.00 0.00 3.79
465 807 8.436200 GTTTCGTACAAATATATCCTGATGCTC 58.564 37.037 0.00 0.00 0.00 4.26
466 808 6.322491 TCGTACAAATATATCCTGATGCTCG 58.678 40.000 0.00 0.00 0.00 5.03
467 809 5.004821 CGTACAAATATATCCTGATGCTCGC 59.995 44.000 0.00 0.00 0.00 5.03
468 810 4.256920 ACAAATATATCCTGATGCTCGCC 58.743 43.478 2.58 0.00 0.00 5.54
469 811 4.019860 ACAAATATATCCTGATGCTCGCCT 60.020 41.667 2.58 0.00 0.00 5.52
470 812 5.187772 ACAAATATATCCTGATGCTCGCCTA 59.812 40.000 2.58 0.00 0.00 3.93
471 813 5.939764 AATATATCCTGATGCTCGCCTAA 57.060 39.130 0.00 0.00 0.00 2.69
472 814 6.491714 AATATATCCTGATGCTCGCCTAAT 57.508 37.500 0.00 0.00 0.00 1.73
473 815 7.603180 AATATATCCTGATGCTCGCCTAATA 57.397 36.000 0.00 0.00 0.00 0.98
474 816 5.939764 ATATCCTGATGCTCGCCTAATAA 57.060 39.130 0.00 0.00 0.00 1.40
475 817 4.623932 ATCCTGATGCTCGCCTAATAAA 57.376 40.909 0.00 0.00 0.00 1.40
476 818 3.728845 TCCTGATGCTCGCCTAATAAAC 58.271 45.455 0.00 0.00 0.00 2.01
477 819 2.808543 CCTGATGCTCGCCTAATAAACC 59.191 50.000 0.00 0.00 0.00 3.27
478 820 3.466836 CTGATGCTCGCCTAATAAACCA 58.533 45.455 0.00 0.00 0.00 3.67
479 821 3.466836 TGATGCTCGCCTAATAAACCAG 58.533 45.455 0.00 0.00 0.00 4.00
480 822 1.663695 TGCTCGCCTAATAAACCAGC 58.336 50.000 0.00 0.00 0.00 4.85
481 823 1.065782 TGCTCGCCTAATAAACCAGCA 60.066 47.619 0.00 0.00 33.08 4.41
482 824 1.599542 GCTCGCCTAATAAACCAGCAG 59.400 52.381 0.00 0.00 0.00 4.24
494 836 4.425577 AAACCAGCAGCTTAAGAATTCG 57.574 40.909 6.67 0.00 0.00 3.34
512 854 3.263489 TCGGATACCAAAACGGCATTA 57.737 42.857 0.00 0.00 39.03 1.90
513 855 3.811083 TCGGATACCAAAACGGCATTAT 58.189 40.909 0.00 0.00 39.03 1.28
521 863 3.446799 CAAAACGGCATTATCATGTGGG 58.553 45.455 0.00 0.00 32.28 4.61
535 877 1.378762 GTGGGGTTAGCCAGCAGAA 59.621 57.895 1.94 0.00 36.17 3.02
544 886 2.435586 CCAGCAGAAGAGGCACCG 60.436 66.667 0.00 0.00 0.00 4.94
556 900 3.034635 AGAGGCACCGAGAAGATACATT 58.965 45.455 0.00 0.00 0.00 2.71
558 902 3.535561 AGGCACCGAGAAGATACATTTG 58.464 45.455 0.00 0.00 0.00 2.32
597 941 2.645838 GCAATCCTGCTCTATGGGAA 57.354 50.000 0.00 0.00 45.74 3.97
598 942 2.502295 GCAATCCTGCTCTATGGGAAG 58.498 52.381 0.00 0.00 45.74 3.46
599 943 2.502295 CAATCCTGCTCTATGGGAAGC 58.498 52.381 0.00 0.00 32.53 3.86
603 947 1.950828 CTGCTCTATGGGAAGCAGTG 58.049 55.000 14.57 0.00 46.67 3.66
604 948 0.543277 TGCTCTATGGGAAGCAGTGG 59.457 55.000 0.00 0.00 33.06 4.00
605 949 0.543749 GCTCTATGGGAAGCAGTGGT 59.456 55.000 0.00 0.00 0.00 4.16
606 950 1.745141 GCTCTATGGGAAGCAGTGGTG 60.745 57.143 0.00 0.00 0.00 4.17
616 960 3.683581 GCAGTGGTGCGAGAATTTC 57.316 52.632 0.00 0.00 40.71 2.17
617 961 0.169009 GCAGTGGTGCGAGAATTTCC 59.831 55.000 0.00 0.00 40.71 3.13
618 962 1.813513 CAGTGGTGCGAGAATTTCCT 58.186 50.000 0.00 0.00 0.00 3.36
619 963 1.466167 CAGTGGTGCGAGAATTTCCTG 59.534 52.381 0.00 0.00 0.00 3.86
620 964 0.169009 GTGGTGCGAGAATTTCCTGC 59.831 55.000 4.07 4.07 0.00 4.85
621 965 0.036732 TGGTGCGAGAATTTCCTGCT 59.963 50.000 10.63 0.00 0.00 4.24
622 966 0.449388 GGTGCGAGAATTTCCTGCTG 59.551 55.000 10.63 0.00 0.00 4.41
623 967 1.160137 GTGCGAGAATTTCCTGCTGT 58.840 50.000 10.63 0.00 0.00 4.40
631 975 2.642139 ATTTCCTGCTGTGCATTTCG 57.358 45.000 0.00 0.00 38.13 3.46
639 983 4.379813 CCTGCTGTGCATTTCGTTATCTTT 60.380 41.667 0.00 0.00 38.13 2.52
690 1034 6.294731 CCAAGTAAAAAGGAGAATGAACCAGG 60.295 42.308 0.00 0.00 0.00 4.45
865 1210 4.052159 TCAAATCGATTCTCTGAGGCTC 57.948 45.455 11.83 7.79 0.00 4.70
870 1215 3.153130 TCGATTCTCTGAGGCTCCATAG 58.847 50.000 12.86 6.78 0.00 2.23
878 1227 3.073209 TCTGAGGCTCCATAGACGACTAT 59.927 47.826 12.86 1.36 39.59 2.12
911 1260 4.261825 GCTTCTCCACTATACGCTTCTCAT 60.262 45.833 0.00 0.00 0.00 2.90
914 1263 4.887655 TCTCCACTATACGCTTCTCATCAA 59.112 41.667 0.00 0.00 0.00 2.57
916 1265 5.773575 TCCACTATACGCTTCTCATCAATC 58.226 41.667 0.00 0.00 0.00 2.67
917 1266 5.536538 TCCACTATACGCTTCTCATCAATCT 59.463 40.000 0.00 0.00 0.00 2.40
918 1267 5.861251 CCACTATACGCTTCTCATCAATCTC 59.139 44.000 0.00 0.00 0.00 2.75
980 1337 3.251729 CAGCATAATTAGGTCGCTGCATT 59.748 43.478 12.97 0.00 43.09 3.56
983 1340 1.392589 AATTAGGTCGCTGCATTGGG 58.607 50.000 0.00 0.00 0.00 4.12
1053 1410 3.753272 ACATTTCTCTGAACATCAACCCG 59.247 43.478 0.00 0.00 0.00 5.28
1068 1425 1.281925 ACCCGGCTTTCTCCATGGAT 61.282 55.000 16.63 0.00 0.00 3.41
1243 1600 1.974265 TTCCCTGTGAAATTCGTGCA 58.026 45.000 0.00 0.00 0.00 4.57
1248 1605 1.980844 CTGTGAAATTCGTGCACATGC 59.019 47.619 18.64 0.00 41.21 4.06
1271 1628 4.630644 TGAGAATATGAGATGGGGCTTC 57.369 45.455 0.00 0.00 0.00 3.86
1285 1643 0.248784 GGCTTCGCTGATTTGGATGC 60.249 55.000 0.00 0.00 0.00 3.91
1288 1646 2.416431 GCTTCGCTGATTTGGATGCTTT 60.416 45.455 0.00 0.00 0.00 3.51
1298 1656 0.597568 TGGATGCTTTTTGTCAGGCG 59.402 50.000 0.00 0.00 0.00 5.52
1362 1720 1.153449 TCGGCGGTCATCATGAACC 60.153 57.895 7.21 2.53 27.88 3.62
1365 1723 1.097547 GGCGGTCATCATGAACCAGG 61.098 60.000 15.32 3.02 27.88 4.45
1430 1788 3.896133 GCGGCCGGAGTCGTGATA 61.896 66.667 29.38 0.00 33.95 2.15
1482 1840 3.934391 CTGAACCCGTCGGTGAGCC 62.934 68.421 11.06 0.00 43.71 4.70
1547 1905 1.604693 CCCTACGTGTTCGCTCAGTTT 60.605 52.381 0.00 0.00 41.18 2.66
1583 1941 4.243008 TCGTTCGTGGCCAAGGCA 62.243 61.111 19.08 3.04 44.11 4.75
1701 2059 0.179070 GTTCATCCTCCTCTTCGCCC 60.179 60.000 0.00 0.00 0.00 6.13
1704 2062 1.458588 ATCCTCCTCTTCGCCCTCC 60.459 63.158 0.00 0.00 0.00 4.30
1709 2067 3.144193 CTCTTCGCCCTCCTCGCT 61.144 66.667 0.00 0.00 0.00 4.93
1711 2069 4.214327 CTTCGCCCTCCTCGCTCC 62.214 72.222 0.00 0.00 0.00 4.70
1743 2101 1.002087 CCAAAGCAGTACGGAAGACCT 59.998 52.381 0.00 0.00 0.00 3.85
1745 2103 4.187056 GCAGTACGGAAGACCTGC 57.813 61.111 0.00 0.00 45.35 4.85
1746 2104 1.448013 GCAGTACGGAAGACCTGCC 60.448 63.158 0.00 0.00 45.56 4.85
1747 2105 1.218316 CAGTACGGAAGACCTGCCC 59.782 63.158 0.00 0.00 0.00 5.36
1748 2106 1.988406 AGTACGGAAGACCTGCCCC 60.988 63.158 0.00 0.00 0.00 5.80
1753 2111 0.254747 CGGAAGACCTGCCCCATTAA 59.745 55.000 0.00 0.00 0.00 1.40
1766 2124 6.466326 CCTGCCCCATTAAATTATCTCTCAGA 60.466 42.308 0.00 0.00 0.00 3.27
1771 2129 7.659390 CCCCATTAAATTATCTCTCAGACTCAC 59.341 40.741 0.00 0.00 0.00 3.51
1774 2132 9.258826 CATTAAATTATCTCTCAGACTCACTGG 57.741 37.037 0.00 0.00 45.76 4.00
1778 2136 0.451383 CTCTCAGACTCACTGGCTCG 59.549 60.000 0.00 0.00 45.76 5.03
1789 2147 1.445754 CTGGCTCGCTCACTCACTG 60.446 63.158 0.00 0.00 0.00 3.66
1930 2369 8.375506 ACTCTACAGTTGTTTTCCTATGATCAA 58.624 33.333 0.00 0.00 0.00 2.57
1932 2371 6.824305 ACAGTTGTTTTCCTATGATCAAGG 57.176 37.500 14.40 14.40 35.26 3.61
2300 2798 2.094803 TGCACACGGATTTGCCTAAATG 60.095 45.455 0.00 0.00 36.66 2.32
2307 2805 4.244862 CGGATTTGCCTAAATGCAGTTTT 58.755 39.130 4.05 0.00 42.66 2.43
2326 2824 8.405531 GCAGTTTTATCATCAAAATACAGCCTA 58.594 33.333 0.00 0.00 30.56 3.93
2335 2833 7.665559 TCATCAAAATACAGCCTATATGGGTTC 59.334 37.037 7.00 0.00 45.67 3.62
2336 2834 7.149202 TCAAAATACAGCCTATATGGGTTCT 57.851 36.000 7.00 0.00 45.67 3.01
2362 2860 9.230122 TGATACACTAGCAATTCAAAATTCTCA 57.770 29.630 0.00 0.00 0.00 3.27
2378 2876 4.737855 TTCTCAATCTAAGTCTTCCGGG 57.262 45.455 0.00 0.00 0.00 5.73
2379 2877 3.709587 TCTCAATCTAAGTCTTCCGGGT 58.290 45.455 0.00 0.00 0.00 5.28
2381 2879 4.530946 TCTCAATCTAAGTCTTCCGGGTTT 59.469 41.667 0.00 0.00 0.00 3.27
2395 2893 1.373570 GGGTTTCGATGCTCCTCAAG 58.626 55.000 0.00 0.00 0.00 3.02
2405 2903 1.000163 TGCTCCTCAAGTTCGTCTGTC 60.000 52.381 0.00 0.00 0.00 3.51
2410 2908 0.748450 TCAAGTTCGTCTGTCGGGTT 59.252 50.000 0.00 0.00 40.32 4.11
2412 2910 0.748450 AAGTTCGTCTGTCGGGTTGA 59.252 50.000 0.00 0.00 40.32 3.18
2426 2924 2.552031 GGGTTGAATTAGACGGAGCTC 58.448 52.381 4.71 4.71 0.00 4.09
2450 2948 0.836606 TTAGATTCATGCCGGCTCCA 59.163 50.000 29.70 7.94 0.00 3.86
2476 2974 1.241315 GCGGCAAGCTTAGGGTTTCA 61.241 55.000 0.00 0.00 44.04 2.69
2477 2975 0.521735 CGGCAAGCTTAGGGTTTCAC 59.478 55.000 0.00 0.00 0.00 3.18
2481 2979 1.459592 CAAGCTTAGGGTTTCACGTCG 59.540 52.381 0.00 0.00 0.00 5.12
2523 3021 4.460948 TCGGTGTAAGGTTATTCAGACC 57.539 45.455 0.00 0.00 37.44 3.85
2536 3034 4.837093 ATTCAGACCGATTCAAGGGTTA 57.163 40.909 0.00 0.00 36.46 2.85
2539 3037 6.494666 TTCAGACCGATTCAAGGGTTATAT 57.505 37.500 0.00 0.00 36.46 0.86
2550 3048 5.364778 TCAAGGGTTATATGGTGACGATTG 58.635 41.667 0.00 0.00 0.00 2.67
2551 3049 5.104693 TCAAGGGTTATATGGTGACGATTGT 60.105 40.000 0.00 0.00 0.00 2.71
2556 3054 2.309528 TATGGTGACGATTGTGGCTC 57.690 50.000 0.00 0.00 0.00 4.70
2557 3055 0.615331 ATGGTGACGATTGTGGCTCT 59.385 50.000 0.00 0.00 0.00 4.09
2562 3060 0.247736 GACGATTGTGGCTCTGAGGT 59.752 55.000 6.83 0.00 0.00 3.85
2564 3062 1.364626 CGATTGTGGCTCTGAGGTGC 61.365 60.000 6.83 0.00 0.00 5.01
2575 3073 2.503356 CTCTGAGGTGCTGGTCCTTATT 59.497 50.000 0.00 0.00 35.20 1.40
2589 3087 3.945921 GTCCTTATTAGGGGCACTGAAAC 59.054 47.826 0.00 0.00 42.26 2.78
2677 3185 9.450807 CTTGAATAAATGCGGAATAAAACTAGG 57.549 33.333 0.00 0.00 0.00 3.02
2751 3260 5.627499 TCAACAACTTATGCTAAGCAAGG 57.373 39.130 0.00 0.00 43.62 3.61
2764 3273 7.456071 TGCTAAGCAAGGTAAACAACCAAGC 62.456 44.000 0.00 0.32 45.58 4.01
2817 3327 4.637534 AGGCTATCACAAAGTAAGTGCATG 59.362 41.667 0.00 0.00 36.93 4.06
2847 3358 6.879400 AGAGTTTGGTTAAGAGATAAGCGAT 58.121 36.000 0.00 0.00 43.43 4.58
2895 3406 1.143684 AGTTCACACCCTTGCAGATGT 59.856 47.619 0.00 0.00 0.00 3.06
2904 3415 6.150976 CACACCCTTGCAGATGTTAATCTTTA 59.849 38.462 0.00 0.00 41.43 1.85
2905 3416 6.891908 ACACCCTTGCAGATGTTAATCTTTAT 59.108 34.615 0.00 0.00 41.43 1.40
2909 3422 8.571336 CCCTTGCAGATGTTAATCTTTATTAGG 58.429 37.037 0.00 0.00 41.43 2.69
2913 3426 6.426937 GCAGATGTTAATCTTTATTAGGGCGA 59.573 38.462 0.00 0.00 41.43 5.54
2916 3429 8.375506 AGATGTTAATCTTTATTAGGGCGATGA 58.624 33.333 0.00 0.00 40.42 2.92
2920 3433 9.220767 GTTAATCTTTATTAGGGCGATGAGAAT 57.779 33.333 0.00 0.00 0.00 2.40
2935 3448 1.033746 AGAATGCACAATGCTCCCCG 61.034 55.000 2.02 0.00 45.31 5.73
2942 3455 0.323725 ACAATGCTCCCCGAAATGCT 60.324 50.000 0.00 0.00 0.00 3.79
3025 3539 0.251653 ACTCTTGAGGGCGGTCACTA 60.252 55.000 2.55 0.00 0.00 2.74
3038 3552 2.476241 CGGTCACTAAACCCGTACAAAC 59.524 50.000 0.00 0.00 37.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.692791 TGAATGGACGTCACGATCTAG 57.307 47.619 18.91 0.00 0.00 2.43
69 70 4.443913 TTTGAATGGACGTCACGATCTA 57.556 40.909 18.91 4.13 0.00 1.98
70 71 3.313012 TTTGAATGGACGTCACGATCT 57.687 42.857 18.91 0.00 0.00 2.75
71 72 4.494199 GGATTTTGAATGGACGTCACGATC 60.494 45.833 18.91 10.07 0.00 3.69
72 73 3.374058 GGATTTTGAATGGACGTCACGAT 59.626 43.478 18.91 2.91 0.00 3.73
74 75 2.482336 TGGATTTTGAATGGACGTCACG 59.518 45.455 18.91 0.00 0.00 4.35
75 76 4.226761 GTTGGATTTTGAATGGACGTCAC 58.773 43.478 18.91 7.49 0.00 3.67
76 77 3.058570 CGTTGGATTTTGAATGGACGTCA 60.059 43.478 18.91 3.91 0.00 4.35
77 78 3.058501 ACGTTGGATTTTGAATGGACGTC 60.059 43.478 7.13 7.13 37.93 4.34
101 103 2.674852 CGTGATCATATGGGCACATAGC 59.325 50.000 15.14 4.60 42.48 2.97
104 106 3.071457 TCTTCGTGATCATATGGGCACAT 59.929 43.478 20.90 6.71 41.13 3.21
105 107 2.433970 TCTTCGTGATCATATGGGCACA 59.566 45.455 20.90 0.00 0.00 4.57
112 114 5.508153 GCCTAGTGTGTCTTCGTGATCATAT 60.508 44.000 0.00 0.00 0.00 1.78
122 159 1.002544 AGGCAAGCCTAGTGTGTCTTC 59.997 52.381 12.82 0.00 46.14 2.87
124 161 0.322975 CAGGCAAGCCTAGTGTGTCT 59.677 55.000 14.18 0.00 46.28 3.41
126 163 1.348064 TACAGGCAAGCCTAGTGTGT 58.652 50.000 14.18 10.47 46.28 3.72
140 177 2.097466 GCGGAAATCCATGTGTTACAGG 59.903 50.000 0.00 0.00 35.14 4.00
143 180 3.840890 TTGCGGAAATCCATGTGTTAC 57.159 42.857 0.00 0.00 35.14 2.50
144 181 4.855715 TTTTGCGGAAATCCATGTGTTA 57.144 36.364 1.94 0.00 35.14 2.41
145 182 3.742433 TTTTGCGGAAATCCATGTGTT 57.258 38.095 1.94 0.00 35.14 3.32
153 190 5.412526 TGGTATACGATTTTGCGGAAATC 57.587 39.130 1.94 12.79 46.62 2.17
154 191 5.821516 TTGGTATACGATTTTGCGGAAAT 57.178 34.783 1.94 0.00 40.61 2.17
158 195 6.879188 AAATTTTGGTATACGATTTTGCGG 57.121 33.333 0.00 0.00 35.12 5.69
159 196 7.274686 AGGAAAATTTTGGTATACGATTTTGCG 59.725 33.333 8.47 0.00 40.58 4.85
188 530 9.717942 GTTATCAGAGCTACAAGATTTCCATAT 57.282 33.333 0.00 0.00 0.00 1.78
190 532 7.800092 AGTTATCAGAGCTACAAGATTTCCAT 58.200 34.615 0.00 0.00 0.00 3.41
191 533 7.187824 AGTTATCAGAGCTACAAGATTTCCA 57.812 36.000 0.00 0.00 0.00 3.53
193 535 6.419413 CGGAGTTATCAGAGCTACAAGATTTC 59.581 42.308 0.00 0.00 0.00 2.17
201 543 4.321378 GGGATTCGGAGTTATCAGAGCTAC 60.321 50.000 0.00 0.00 31.02 3.58
205 547 3.891977 TCTGGGATTCGGAGTTATCAGAG 59.108 47.826 0.00 0.00 31.02 3.35
206 548 3.910989 TCTGGGATTCGGAGTTATCAGA 58.089 45.455 0.00 0.00 0.00 3.27
207 549 4.672587 TTCTGGGATTCGGAGTTATCAG 57.327 45.455 0.00 0.00 31.44 2.90
209 551 4.766375 TGTTTCTGGGATTCGGAGTTATC 58.234 43.478 0.00 0.00 31.44 1.75
210 552 4.837093 TGTTTCTGGGATTCGGAGTTAT 57.163 40.909 0.00 0.00 31.44 1.89
212 554 3.502123 TTGTTTCTGGGATTCGGAGTT 57.498 42.857 0.00 0.00 31.44 3.01
213 555 3.146847 GTTTGTTTCTGGGATTCGGAGT 58.853 45.455 0.00 0.00 31.44 3.85
216 558 2.621055 TGTGTTTGTTTCTGGGATTCGG 59.379 45.455 0.00 0.00 0.00 4.30
221 563 3.829601 ACACTTTGTGTTTGTTTCTGGGA 59.170 39.130 0.00 0.00 45.08 4.37
222 564 3.925913 CACACTTTGTGTTTGTTTCTGGG 59.074 43.478 0.12 0.00 45.08 4.45
236 578 3.427098 CCATCACTGCTATGCACACTTTG 60.427 47.826 0.00 0.00 33.79 2.77
237 579 2.751259 CCATCACTGCTATGCACACTTT 59.249 45.455 0.00 0.00 33.79 2.66
238 580 2.362736 CCATCACTGCTATGCACACTT 58.637 47.619 0.00 0.00 33.79 3.16
239 581 1.407851 CCCATCACTGCTATGCACACT 60.408 52.381 0.00 0.00 33.79 3.55
240 582 1.019673 CCCATCACTGCTATGCACAC 58.980 55.000 0.00 0.00 33.79 3.82
241 583 0.749091 GCCCATCACTGCTATGCACA 60.749 55.000 0.00 0.00 33.79 4.57
242 584 0.465097 AGCCCATCACTGCTATGCAC 60.465 55.000 0.00 0.00 35.69 4.57
243 585 0.464916 CAGCCCATCACTGCTATGCA 60.465 55.000 0.00 0.00 35.69 3.96
244 586 0.179037 TCAGCCCATCACTGCTATGC 60.179 55.000 0.00 0.00 35.69 3.14
245 587 2.152016 CATCAGCCCATCACTGCTATG 58.848 52.381 0.00 0.00 35.69 2.23
246 588 2.052468 TCATCAGCCCATCACTGCTAT 58.948 47.619 0.00 0.00 35.69 2.97
247 589 1.499368 TCATCAGCCCATCACTGCTA 58.501 50.000 0.00 0.00 35.69 3.49
248 590 0.844660 ATCATCAGCCCATCACTGCT 59.155 50.000 0.00 0.00 38.67 4.24
249 591 1.236628 GATCATCAGCCCATCACTGC 58.763 55.000 0.00 0.00 35.04 4.40
250 592 2.632987 TGATCATCAGCCCATCACTG 57.367 50.000 0.00 0.00 36.44 3.66
251 593 3.394940 AGATTGATCATCAGCCCATCACT 59.605 43.478 0.00 0.00 33.75 3.41
252 594 3.752665 AGATTGATCATCAGCCCATCAC 58.247 45.455 0.00 0.00 33.75 3.06
253 595 4.448720 AAGATTGATCATCAGCCCATCA 57.551 40.909 0.00 0.00 33.75 3.07
254 596 6.713903 TCTTTAAGATTGATCATCAGCCCATC 59.286 38.462 0.00 0.00 33.75 3.51
255 597 6.607970 TCTTTAAGATTGATCATCAGCCCAT 58.392 36.000 0.00 0.00 33.75 4.00
256 598 6.005066 TCTTTAAGATTGATCATCAGCCCA 57.995 37.500 0.00 0.00 33.75 5.36
257 599 6.294473 TCTCTTTAAGATTGATCATCAGCCC 58.706 40.000 0.00 0.00 33.75 5.19
258 600 6.991531 ACTCTCTTTAAGATTGATCATCAGCC 59.008 38.462 0.00 0.00 33.75 4.85
259 601 7.710044 TGACTCTCTTTAAGATTGATCATCAGC 59.290 37.037 0.00 0.00 33.75 4.26
260 602 9.033481 GTGACTCTCTTTAAGATTGATCATCAG 57.967 37.037 0.00 0.00 33.75 2.90
261 603 8.534496 TGTGACTCTCTTTAAGATTGATCATCA 58.466 33.333 0.00 0.00 33.75 3.07
262 604 8.939201 TGTGACTCTCTTTAAGATTGATCATC 57.061 34.615 0.00 0.00 32.19 2.92
263 605 9.160496 GTTGTGACTCTCTTTAAGATTGATCAT 57.840 33.333 0.00 0.00 32.19 2.45
264 606 7.604164 GGTTGTGACTCTCTTTAAGATTGATCA 59.396 37.037 0.00 0.00 32.19 2.92
265 607 7.604164 TGGTTGTGACTCTCTTTAAGATTGATC 59.396 37.037 0.00 0.00 32.19 2.92
266 608 7.453393 TGGTTGTGACTCTCTTTAAGATTGAT 58.547 34.615 0.00 0.00 32.19 2.57
267 609 6.826668 TGGTTGTGACTCTCTTTAAGATTGA 58.173 36.000 0.00 0.00 32.19 2.57
268 610 7.678947 ATGGTTGTGACTCTCTTTAAGATTG 57.321 36.000 0.00 0.00 32.19 2.67
269 611 8.571336 CAAATGGTTGTGACTCTCTTTAAGATT 58.429 33.333 0.00 0.00 32.19 2.40
270 612 7.939039 TCAAATGGTTGTGACTCTCTTTAAGAT 59.061 33.333 0.00 0.00 36.07 2.40
271 613 7.279615 TCAAATGGTTGTGACTCTCTTTAAGA 58.720 34.615 0.00 0.00 36.07 2.10
272 614 7.496529 TCAAATGGTTGTGACTCTCTTTAAG 57.503 36.000 0.00 0.00 36.07 1.85
273 615 8.463930 AATCAAATGGTTGTGACTCTCTTTAA 57.536 30.769 0.00 0.00 36.07 1.52
274 616 7.174946 GGAATCAAATGGTTGTGACTCTCTTTA 59.825 37.037 0.00 0.00 36.07 1.85
275 617 6.015940 GGAATCAAATGGTTGTGACTCTCTTT 60.016 38.462 0.00 0.00 36.07 2.52
276 618 5.474876 GGAATCAAATGGTTGTGACTCTCTT 59.525 40.000 0.00 0.00 36.07 2.85
277 619 5.006386 GGAATCAAATGGTTGTGACTCTCT 58.994 41.667 0.00 0.00 36.07 3.10
278 620 4.761739 TGGAATCAAATGGTTGTGACTCTC 59.238 41.667 0.00 0.00 36.07 3.20
279 621 4.520492 GTGGAATCAAATGGTTGTGACTCT 59.480 41.667 0.00 0.00 36.07 3.24
280 622 4.278170 TGTGGAATCAAATGGTTGTGACTC 59.722 41.667 0.00 0.00 36.07 3.36
281 623 4.214310 TGTGGAATCAAATGGTTGTGACT 58.786 39.130 0.00 0.00 36.07 3.41
282 624 4.037923 ACTGTGGAATCAAATGGTTGTGAC 59.962 41.667 0.00 0.00 36.07 3.67
283 625 4.037803 CACTGTGGAATCAAATGGTTGTGA 59.962 41.667 0.00 0.00 36.07 3.58
284 626 4.037803 TCACTGTGGAATCAAATGGTTGTG 59.962 41.667 8.11 0.00 36.07 3.33
285 627 4.214310 TCACTGTGGAATCAAATGGTTGT 58.786 39.130 8.11 0.00 36.07 3.32
286 628 4.852134 TCACTGTGGAATCAAATGGTTG 57.148 40.909 8.11 0.00 35.95 3.77
287 629 4.834496 ACATCACTGTGGAATCAAATGGTT 59.166 37.500 8.11 0.00 33.22 3.67
288 630 4.410099 ACATCACTGTGGAATCAAATGGT 58.590 39.130 8.11 0.00 33.22 3.55
301 643 2.923121 AGCAAGACAACACATCACTGT 58.077 42.857 0.00 0.00 35.44 3.55
302 644 4.309933 TCTAGCAAGACAACACATCACTG 58.690 43.478 0.00 0.00 0.00 3.66
303 645 4.607293 TCTAGCAAGACAACACATCACT 57.393 40.909 0.00 0.00 0.00 3.41
304 646 5.673337 TTTCTAGCAAGACAACACATCAC 57.327 39.130 0.00 0.00 0.00 3.06
305 647 6.459573 GGTTTTTCTAGCAAGACAACACATCA 60.460 38.462 0.00 0.00 31.03 3.07
306 648 5.915196 GGTTTTTCTAGCAAGACAACACATC 59.085 40.000 0.00 0.00 31.03 3.06
307 649 5.505654 CGGTTTTTCTAGCAAGACAACACAT 60.506 40.000 0.00 0.00 31.03 3.21
308 650 4.201871 CGGTTTTTCTAGCAAGACAACACA 60.202 41.667 0.00 0.00 31.03 3.72
309 651 4.201881 ACGGTTTTTCTAGCAAGACAACAC 60.202 41.667 0.00 0.00 31.03 3.32
310 652 3.942748 ACGGTTTTTCTAGCAAGACAACA 59.057 39.130 0.00 0.00 31.03 3.33
311 653 4.201881 ACACGGTTTTTCTAGCAAGACAAC 60.202 41.667 0.00 0.00 0.00 3.32
312 654 3.942748 ACACGGTTTTTCTAGCAAGACAA 59.057 39.130 0.00 0.00 0.00 3.18
313 655 3.311322 CACACGGTTTTTCTAGCAAGACA 59.689 43.478 0.00 0.00 0.00 3.41
314 656 3.848554 GCACACGGTTTTTCTAGCAAGAC 60.849 47.826 0.00 0.00 0.00 3.01
315 657 2.289547 GCACACGGTTTTTCTAGCAAGA 59.710 45.455 0.00 0.00 0.00 3.02
316 658 2.604614 GGCACACGGTTTTTCTAGCAAG 60.605 50.000 0.00 0.00 0.00 4.01
317 659 1.335496 GGCACACGGTTTTTCTAGCAA 59.665 47.619 0.00 0.00 0.00 3.91
318 660 0.948678 GGCACACGGTTTTTCTAGCA 59.051 50.000 0.00 0.00 0.00 3.49
319 661 0.948678 TGGCACACGGTTTTTCTAGC 59.051 50.000 0.00 0.00 0.00 3.42
320 662 3.701532 TTTGGCACACGGTTTTTCTAG 57.298 42.857 0.00 0.00 39.29 2.43
321 663 3.444388 ACTTTTGGCACACGGTTTTTCTA 59.556 39.130 0.00 0.00 39.29 2.10
322 664 2.232696 ACTTTTGGCACACGGTTTTTCT 59.767 40.909 0.00 0.00 39.29 2.52
323 665 2.612604 ACTTTTGGCACACGGTTTTTC 58.387 42.857 0.00 0.00 39.29 2.29
324 666 2.739379 CAACTTTTGGCACACGGTTTTT 59.261 40.909 0.00 0.00 39.29 1.94
325 667 2.028930 TCAACTTTTGGCACACGGTTTT 60.029 40.909 0.00 0.00 39.29 2.43
326 668 1.546476 TCAACTTTTGGCACACGGTTT 59.454 42.857 0.00 0.00 39.29 3.27
327 669 1.134175 CTCAACTTTTGGCACACGGTT 59.866 47.619 0.00 0.00 39.29 4.44
328 670 0.738389 CTCAACTTTTGGCACACGGT 59.262 50.000 0.00 0.00 39.29 4.83
329 671 0.738389 ACTCAACTTTTGGCACACGG 59.262 50.000 0.00 0.00 39.29 4.94
330 672 2.598907 CGTACTCAACTTTTGGCACACG 60.599 50.000 0.00 0.00 39.29 4.49
331 673 2.353579 ACGTACTCAACTTTTGGCACAC 59.646 45.455 0.00 0.00 39.29 3.82
332 674 2.353269 CACGTACTCAACTTTTGGCACA 59.647 45.455 0.00 0.00 0.00 4.57
333 675 2.353579 ACACGTACTCAACTTTTGGCAC 59.646 45.455 0.00 0.00 0.00 5.01
334 676 2.634600 ACACGTACTCAACTTTTGGCA 58.365 42.857 0.00 0.00 0.00 4.92
335 677 4.521010 GTTACACGTACTCAACTTTTGGC 58.479 43.478 0.00 0.00 0.00 4.52
336 678 4.812626 AGGTTACACGTACTCAACTTTTGG 59.187 41.667 0.00 0.00 0.00 3.28
337 679 5.751990 AGAGGTTACACGTACTCAACTTTTG 59.248 40.000 0.00 0.00 32.52 2.44
338 680 5.751990 CAGAGGTTACACGTACTCAACTTTT 59.248 40.000 0.00 0.00 32.52 2.27
339 681 5.287226 CAGAGGTTACACGTACTCAACTTT 58.713 41.667 0.00 0.00 32.52 2.66
340 682 4.795308 GCAGAGGTTACACGTACTCAACTT 60.795 45.833 0.00 0.00 32.52 2.66
341 683 3.305199 GCAGAGGTTACACGTACTCAACT 60.305 47.826 0.00 0.00 32.52 3.16
342 684 2.985139 GCAGAGGTTACACGTACTCAAC 59.015 50.000 0.00 0.00 32.52 3.18
343 685 2.624364 TGCAGAGGTTACACGTACTCAA 59.376 45.455 0.00 0.00 32.52 3.02
344 686 2.232399 TGCAGAGGTTACACGTACTCA 58.768 47.619 0.00 0.00 32.52 3.41
345 687 3.293311 TTGCAGAGGTTACACGTACTC 57.707 47.619 0.00 0.00 0.00 2.59
346 688 3.738830 TTTGCAGAGGTTACACGTACT 57.261 42.857 0.00 0.00 0.00 2.73
347 689 4.508861 TCTTTTTGCAGAGGTTACACGTAC 59.491 41.667 0.00 0.00 0.00 3.67
348 690 4.695396 TCTTTTTGCAGAGGTTACACGTA 58.305 39.130 0.00 0.00 0.00 3.57
349 691 3.537580 TCTTTTTGCAGAGGTTACACGT 58.462 40.909 0.00 0.00 0.00 4.49
350 692 4.272504 TCTTCTTTTTGCAGAGGTTACACG 59.727 41.667 0.00 0.00 0.00 4.49
351 693 5.527582 TCTCTTCTTTTTGCAGAGGTTACAC 59.472 40.000 0.00 0.00 36.82 2.90
352 694 5.527582 GTCTCTTCTTTTTGCAGAGGTTACA 59.472 40.000 0.00 0.00 36.82 2.41
353 695 5.333416 CGTCTCTTCTTTTTGCAGAGGTTAC 60.333 44.000 0.00 0.00 36.82 2.50
354 696 4.750098 CGTCTCTTCTTTTTGCAGAGGTTA 59.250 41.667 0.00 0.00 36.82 2.85
355 697 3.561725 CGTCTCTTCTTTTTGCAGAGGTT 59.438 43.478 0.00 0.00 36.82 3.50
356 698 3.134458 CGTCTCTTCTTTTTGCAGAGGT 58.866 45.455 0.00 0.00 36.82 3.85
357 699 3.393800 TCGTCTCTTCTTTTTGCAGAGG 58.606 45.455 0.00 0.00 36.82 3.69
358 700 5.178252 TCATTCGTCTCTTCTTTTTGCAGAG 59.822 40.000 0.00 0.00 37.39 3.35
359 701 5.050091 GTCATTCGTCTCTTCTTTTTGCAGA 60.050 40.000 0.00 0.00 0.00 4.26
360 702 5.049818 AGTCATTCGTCTCTTCTTTTTGCAG 60.050 40.000 0.00 0.00 0.00 4.41
361 703 4.816385 AGTCATTCGTCTCTTCTTTTTGCA 59.184 37.500 0.00 0.00 0.00 4.08
362 704 5.349824 AGTCATTCGTCTCTTCTTTTTGC 57.650 39.130 0.00 0.00 0.00 3.68
363 705 7.012358 GCTTAGTCATTCGTCTCTTCTTTTTG 58.988 38.462 0.00 0.00 0.00 2.44
364 706 6.931840 AGCTTAGTCATTCGTCTCTTCTTTTT 59.068 34.615 0.00 0.00 0.00 1.94
365 707 6.459923 AGCTTAGTCATTCGTCTCTTCTTTT 58.540 36.000 0.00 0.00 0.00 2.27
366 708 6.031751 AGCTTAGTCATTCGTCTCTTCTTT 57.968 37.500 0.00 0.00 0.00 2.52
367 709 5.652994 AGCTTAGTCATTCGTCTCTTCTT 57.347 39.130 0.00 0.00 0.00 2.52
368 710 5.220970 GCTAGCTTAGTCATTCGTCTCTTCT 60.221 44.000 7.70 0.00 0.00 2.85
369 711 4.973663 GCTAGCTTAGTCATTCGTCTCTTC 59.026 45.833 7.70 0.00 0.00 2.87
370 712 4.399618 TGCTAGCTTAGTCATTCGTCTCTT 59.600 41.667 17.23 0.00 0.00 2.85
371 713 3.948473 TGCTAGCTTAGTCATTCGTCTCT 59.052 43.478 17.23 0.00 0.00 3.10
372 714 4.294416 TGCTAGCTTAGTCATTCGTCTC 57.706 45.455 17.23 0.00 0.00 3.36
373 715 4.158764 AGTTGCTAGCTTAGTCATTCGTCT 59.841 41.667 17.23 0.00 0.00 4.18
374 716 4.425520 AGTTGCTAGCTTAGTCATTCGTC 58.574 43.478 17.23 0.00 0.00 4.20
375 717 4.457834 AGTTGCTAGCTTAGTCATTCGT 57.542 40.909 17.23 0.00 0.00 3.85
376 718 6.887376 TTTAGTTGCTAGCTTAGTCATTCG 57.113 37.500 17.23 0.00 0.00 3.34
377 719 9.495754 CAAATTTAGTTGCTAGCTTAGTCATTC 57.504 33.333 17.23 0.00 0.00 2.67
378 720 9.231297 TCAAATTTAGTTGCTAGCTTAGTCATT 57.769 29.630 17.23 5.22 0.00 2.57
379 721 8.792830 TCAAATTTAGTTGCTAGCTTAGTCAT 57.207 30.769 17.23 0.00 0.00 3.06
380 722 7.878127 ACTCAAATTTAGTTGCTAGCTTAGTCA 59.122 33.333 17.23 0.00 0.00 3.41
381 723 8.171840 CACTCAAATTTAGTTGCTAGCTTAGTC 58.828 37.037 17.23 2.00 0.00 2.59
382 724 7.361286 GCACTCAAATTTAGTTGCTAGCTTAGT 60.361 37.037 17.23 9.39 0.00 2.24
383 725 6.963805 GCACTCAAATTTAGTTGCTAGCTTAG 59.036 38.462 17.23 0.00 0.00 2.18
384 726 6.429692 TGCACTCAAATTTAGTTGCTAGCTTA 59.570 34.615 17.23 0.67 0.00 3.09
385 727 5.241506 TGCACTCAAATTTAGTTGCTAGCTT 59.758 36.000 17.23 4.27 0.00 3.74
386 728 4.761739 TGCACTCAAATTTAGTTGCTAGCT 59.238 37.500 17.23 0.00 0.00 3.32
387 729 4.853743 GTGCACTCAAATTTAGTTGCTAGC 59.146 41.667 10.32 8.10 0.00 3.42
388 730 5.082059 CGTGCACTCAAATTTAGTTGCTAG 58.918 41.667 16.19 7.69 0.00 3.42
389 731 4.612712 GCGTGCACTCAAATTTAGTTGCTA 60.613 41.667 16.19 3.45 0.00 3.49
390 732 3.853307 GCGTGCACTCAAATTTAGTTGCT 60.853 43.478 16.19 0.00 0.00 3.91
391 733 2.405025 GCGTGCACTCAAATTTAGTTGC 59.595 45.455 16.19 1.83 0.00 4.17
392 734 3.626977 TGCGTGCACTCAAATTTAGTTG 58.373 40.909 16.19 0.00 0.00 3.16
393 735 3.980646 TGCGTGCACTCAAATTTAGTT 57.019 38.095 16.19 0.00 0.00 2.24
394 736 3.753272 AGATGCGTGCACTCAAATTTAGT 59.247 39.130 14.37 0.00 0.00 2.24
395 737 4.093514 CAGATGCGTGCACTCAAATTTAG 58.906 43.478 14.37 0.00 0.00 1.85
396 738 3.501828 ACAGATGCGTGCACTCAAATTTA 59.498 39.130 14.37 0.00 0.00 1.40
397 739 2.294233 ACAGATGCGTGCACTCAAATTT 59.706 40.909 14.37 0.00 0.00 1.82
398 740 1.881973 ACAGATGCGTGCACTCAAATT 59.118 42.857 14.37 0.00 0.00 1.82
399 741 1.527034 ACAGATGCGTGCACTCAAAT 58.473 45.000 14.37 2.36 0.00 2.32
400 742 1.308047 AACAGATGCGTGCACTCAAA 58.692 45.000 14.37 0.00 0.00 2.69
401 743 1.308047 AAACAGATGCGTGCACTCAA 58.692 45.000 14.37 0.00 0.00 3.02
402 744 1.308047 AAAACAGATGCGTGCACTCA 58.692 45.000 12.63 12.63 0.00 3.41
403 745 2.046313 CAAAAACAGATGCGTGCACTC 58.954 47.619 16.19 7.74 0.00 3.51
404 746 1.865248 GCAAAAACAGATGCGTGCACT 60.865 47.619 16.19 0.00 32.17 4.40
405 747 0.503961 GCAAAAACAGATGCGTGCAC 59.496 50.000 6.82 6.82 32.17 4.57
406 748 0.385029 AGCAAAAACAGATGCGTGCA 59.615 45.000 0.00 0.00 46.98 4.57
407 749 1.055338 GAGCAAAAACAGATGCGTGC 58.945 50.000 0.00 0.00 46.98 5.34
408 750 2.046313 GTGAGCAAAAACAGATGCGTG 58.954 47.619 0.00 0.00 46.98 5.34
409 751 1.001378 GGTGAGCAAAAACAGATGCGT 60.001 47.619 0.00 0.00 46.98 5.24
410 752 1.267806 AGGTGAGCAAAAACAGATGCG 59.732 47.619 0.00 0.00 46.98 4.73
411 753 4.708726 ATAGGTGAGCAAAAACAGATGC 57.291 40.909 0.00 0.00 42.87 3.91
412 754 6.595326 TGAGTATAGGTGAGCAAAAACAGATG 59.405 38.462 0.00 0.00 0.00 2.90
413 755 6.711277 TGAGTATAGGTGAGCAAAAACAGAT 58.289 36.000 0.00 0.00 0.00 2.90
414 756 6.109156 TGAGTATAGGTGAGCAAAAACAGA 57.891 37.500 0.00 0.00 0.00 3.41
415 757 6.428159 ACTTGAGTATAGGTGAGCAAAAACAG 59.572 38.462 0.00 0.00 0.00 3.16
416 758 6.296026 ACTTGAGTATAGGTGAGCAAAAACA 58.704 36.000 0.00 0.00 0.00 2.83
417 759 6.803154 ACTTGAGTATAGGTGAGCAAAAAC 57.197 37.500 0.00 0.00 0.00 2.43
418 760 7.307751 CGAAACTTGAGTATAGGTGAGCAAAAA 60.308 37.037 0.00 0.00 0.00 1.94
419 761 6.147164 CGAAACTTGAGTATAGGTGAGCAAAA 59.853 38.462 0.00 0.00 0.00 2.44
420 762 5.637810 CGAAACTTGAGTATAGGTGAGCAAA 59.362 40.000 0.00 0.00 0.00 3.68
421 763 5.168569 CGAAACTTGAGTATAGGTGAGCAA 58.831 41.667 0.00 0.00 0.00 3.91
422 764 4.219944 ACGAAACTTGAGTATAGGTGAGCA 59.780 41.667 0.00 0.00 0.00 4.26
423 765 4.745649 ACGAAACTTGAGTATAGGTGAGC 58.254 43.478 0.00 0.00 0.00 4.26
424 766 6.849502 TGTACGAAACTTGAGTATAGGTGAG 58.150 40.000 0.00 0.00 0.00 3.51
425 767 6.822667 TGTACGAAACTTGAGTATAGGTGA 57.177 37.500 0.00 0.00 0.00 4.02
426 768 7.878477 TTTGTACGAAACTTGAGTATAGGTG 57.122 36.000 0.00 0.00 0.00 4.00
433 775 9.314321 CAGGATATATTTGTACGAAACTTGAGT 57.686 33.333 0.00 0.00 0.00 3.41
434 776 9.529325 TCAGGATATATTTGTACGAAACTTGAG 57.471 33.333 0.00 0.00 0.00 3.02
437 779 8.774586 GCATCAGGATATATTTGTACGAAACTT 58.225 33.333 0.00 0.00 0.00 2.66
438 780 8.150945 AGCATCAGGATATATTTGTACGAAACT 58.849 33.333 0.00 0.00 0.00 2.66
439 781 8.311650 AGCATCAGGATATATTTGTACGAAAC 57.688 34.615 0.00 0.00 0.00 2.78
440 782 7.328493 CGAGCATCAGGATATATTTGTACGAAA 59.672 37.037 0.00 0.00 33.17 3.46
441 783 6.806739 CGAGCATCAGGATATATTTGTACGAA 59.193 38.462 0.00 0.00 33.17 3.85
442 784 6.322491 CGAGCATCAGGATATATTTGTACGA 58.678 40.000 0.00 0.00 33.17 3.43
443 785 5.004821 GCGAGCATCAGGATATATTTGTACG 59.995 44.000 0.00 0.00 33.17 3.67
444 786 5.292101 GGCGAGCATCAGGATATATTTGTAC 59.708 44.000 0.00 0.00 33.17 2.90
445 787 5.187772 AGGCGAGCATCAGGATATATTTGTA 59.812 40.000 0.00 0.00 33.17 2.41
446 788 4.019860 AGGCGAGCATCAGGATATATTTGT 60.020 41.667 0.00 0.00 33.17 2.83
447 789 4.511527 AGGCGAGCATCAGGATATATTTG 58.488 43.478 0.00 0.00 33.17 2.32
448 790 4.833478 AGGCGAGCATCAGGATATATTT 57.167 40.909 0.00 0.00 33.17 1.40
449 791 5.939764 TTAGGCGAGCATCAGGATATATT 57.060 39.130 0.00 0.00 33.17 1.28
450 792 7.603180 TTATTAGGCGAGCATCAGGATATAT 57.397 36.000 0.00 0.00 33.17 0.86
451 793 7.265673 GTTTATTAGGCGAGCATCAGGATATA 58.734 38.462 0.00 0.00 33.17 0.86
452 794 5.939764 TTATTAGGCGAGCATCAGGATAT 57.060 39.130 0.00 0.00 33.17 1.63
453 795 5.479306 GTTTATTAGGCGAGCATCAGGATA 58.521 41.667 0.00 0.00 33.17 2.59
454 796 4.319177 GTTTATTAGGCGAGCATCAGGAT 58.681 43.478 0.00 0.00 33.17 3.24
455 797 3.494398 GGTTTATTAGGCGAGCATCAGGA 60.494 47.826 0.00 0.00 33.17 3.86
456 798 2.808543 GGTTTATTAGGCGAGCATCAGG 59.191 50.000 0.00 0.00 33.17 3.86
457 799 3.466836 TGGTTTATTAGGCGAGCATCAG 58.533 45.455 0.00 0.00 33.17 2.90
458 800 3.466836 CTGGTTTATTAGGCGAGCATCA 58.533 45.455 0.00 0.00 33.17 3.07
459 801 2.224314 GCTGGTTTATTAGGCGAGCATC 59.776 50.000 0.00 0.00 34.77 3.91
460 802 2.222027 GCTGGTTTATTAGGCGAGCAT 58.778 47.619 0.00 0.00 34.77 3.79
461 803 1.065782 TGCTGGTTTATTAGGCGAGCA 60.066 47.619 0.00 0.00 40.60 4.26
462 804 1.599542 CTGCTGGTTTATTAGGCGAGC 59.400 52.381 0.00 0.00 35.12 5.03
463 805 1.599542 GCTGCTGGTTTATTAGGCGAG 59.400 52.381 0.00 0.00 0.00 5.03
464 806 1.209504 AGCTGCTGGTTTATTAGGCGA 59.790 47.619 0.00 0.00 0.00 5.54
465 807 1.668419 AGCTGCTGGTTTATTAGGCG 58.332 50.000 0.00 0.00 0.00 5.52
466 808 4.881850 TCTTAAGCTGCTGGTTTATTAGGC 59.118 41.667 13.39 0.00 35.36 3.93
467 809 7.573968 ATTCTTAAGCTGCTGGTTTATTAGG 57.426 36.000 13.39 0.00 35.36 2.69
468 810 7.852945 CGAATTCTTAAGCTGCTGGTTTATTAG 59.147 37.037 13.39 6.78 35.36 1.73
469 811 7.201696 CCGAATTCTTAAGCTGCTGGTTTATTA 60.202 37.037 13.39 0.00 35.36 0.98
470 812 6.404734 CCGAATTCTTAAGCTGCTGGTTTATT 60.405 38.462 13.39 8.43 35.36 1.40
471 813 5.066505 CCGAATTCTTAAGCTGCTGGTTTAT 59.933 40.000 13.39 0.90 35.36 1.40
472 814 4.394920 CCGAATTCTTAAGCTGCTGGTTTA 59.605 41.667 13.39 3.77 35.36 2.01
473 815 3.191371 CCGAATTCTTAAGCTGCTGGTTT 59.809 43.478 13.39 0.00 35.36 3.27
474 816 2.749621 CCGAATTCTTAAGCTGCTGGTT 59.250 45.455 12.76 12.76 37.65 3.67
475 817 2.027192 TCCGAATTCTTAAGCTGCTGGT 60.027 45.455 1.35 0.00 0.00 4.00
476 818 2.632377 TCCGAATTCTTAAGCTGCTGG 58.368 47.619 1.35 0.00 0.00 4.85
477 819 4.212214 GGTATCCGAATTCTTAAGCTGCTG 59.788 45.833 1.35 0.00 0.00 4.41
478 820 4.141711 TGGTATCCGAATTCTTAAGCTGCT 60.142 41.667 3.52 0.00 0.00 4.24
479 821 4.127171 TGGTATCCGAATTCTTAAGCTGC 58.873 43.478 3.52 0.00 0.00 5.25
480 822 6.677781 TTTGGTATCCGAATTCTTAAGCTG 57.322 37.500 3.52 0.00 0.00 4.24
481 823 6.183360 CGTTTTGGTATCCGAATTCTTAAGCT 60.183 38.462 3.52 0.00 0.00 3.74
482 824 5.963586 CGTTTTGGTATCCGAATTCTTAAGC 59.036 40.000 3.52 0.00 0.00 3.09
494 836 5.009610 ACATGATAATGCCGTTTTGGTATCC 59.990 40.000 0.00 0.00 43.02 2.59
512 854 0.106519 GCTGGCTAACCCCACATGAT 60.107 55.000 0.00 0.00 33.59 2.45
513 855 1.302949 GCTGGCTAACCCCACATGA 59.697 57.895 0.00 0.00 33.59 3.07
521 863 0.746204 GCCTCTTCTGCTGGCTAACC 60.746 60.000 0.00 0.00 43.05 2.85
535 877 2.145397 TGTATCTTCTCGGTGCCTCT 57.855 50.000 0.00 0.00 0.00 3.69
544 886 8.964476 TGTCCTTATTCCAAATGTATCTTCTC 57.036 34.615 0.00 0.00 0.00 2.87
579 923 2.158711 TGCTTCCCATAGAGCAGGATTG 60.159 50.000 0.00 0.00 33.06 2.67
580 924 2.130193 TGCTTCCCATAGAGCAGGATT 58.870 47.619 0.00 0.00 33.06 3.01
581 925 1.811778 TGCTTCCCATAGAGCAGGAT 58.188 50.000 0.00 0.00 33.06 3.24
582 926 3.322501 TGCTTCCCATAGAGCAGGA 57.677 52.632 0.00 0.00 33.06 3.86
585 929 0.543277 CCACTGCTTCCCATAGAGCA 59.457 55.000 0.00 0.00 35.83 4.26
586 930 0.543749 ACCACTGCTTCCCATAGAGC 59.456 55.000 0.00 0.00 0.00 4.09
587 931 1.745141 GCACCACTGCTTCCCATAGAG 60.745 57.143 0.00 0.00 40.63 2.43
588 932 0.253044 GCACCACTGCTTCCCATAGA 59.747 55.000 0.00 0.00 40.63 1.98
589 933 1.091771 CGCACCACTGCTTCCCATAG 61.092 60.000 0.00 0.00 41.77 2.23
590 934 1.078497 CGCACCACTGCTTCCCATA 60.078 57.895 0.00 0.00 41.77 2.74
591 935 2.360350 CGCACCACTGCTTCCCAT 60.360 61.111 0.00 0.00 41.77 4.00
592 936 3.535629 CTCGCACCACTGCTTCCCA 62.536 63.158 0.00 0.00 41.77 4.37
594 938 0.674895 ATTCTCGCACCACTGCTTCC 60.675 55.000 0.00 0.00 41.77 3.46
595 939 1.160137 AATTCTCGCACCACTGCTTC 58.840 50.000 0.00 0.00 41.77 3.86
596 940 1.537202 GAAATTCTCGCACCACTGCTT 59.463 47.619 0.00 0.00 41.77 3.91
597 941 1.160137 GAAATTCTCGCACCACTGCT 58.840 50.000 0.00 0.00 41.77 4.24
598 942 0.169009 GGAAATTCTCGCACCACTGC 59.831 55.000 0.00 0.00 40.38 4.40
599 943 1.466167 CAGGAAATTCTCGCACCACTG 59.534 52.381 0.00 0.00 0.00 3.66
601 945 0.169009 GCAGGAAATTCTCGCACCAC 59.831 55.000 0.00 0.00 0.00 4.16
603 947 0.449388 CAGCAGGAAATTCTCGCACC 59.551 55.000 9.17 0.00 0.00 5.01
604 948 1.135859 CACAGCAGGAAATTCTCGCAC 60.136 52.381 9.17 0.00 0.00 5.34
605 949 1.159285 CACAGCAGGAAATTCTCGCA 58.841 50.000 9.17 0.00 0.00 5.10
606 950 0.179179 GCACAGCAGGAAATTCTCGC 60.179 55.000 0.00 0.00 0.00 5.03
607 951 1.159285 TGCACAGCAGGAAATTCTCG 58.841 50.000 0.00 0.00 33.32 4.04
608 952 3.863142 AATGCACAGCAGGAAATTCTC 57.137 42.857 0.00 0.00 43.65 2.87
609 953 3.366679 CGAAATGCACAGCAGGAAATTCT 60.367 43.478 0.00 0.00 43.65 2.40
610 954 2.919229 CGAAATGCACAGCAGGAAATTC 59.081 45.455 0.00 0.00 43.65 2.17
611 955 2.297033 ACGAAATGCACAGCAGGAAATT 59.703 40.909 0.00 0.00 43.65 1.82
612 956 1.888512 ACGAAATGCACAGCAGGAAAT 59.111 42.857 0.00 0.00 43.65 2.17
613 957 1.317613 ACGAAATGCACAGCAGGAAA 58.682 45.000 0.00 0.00 43.65 3.13
614 958 1.317613 AACGAAATGCACAGCAGGAA 58.682 45.000 0.00 0.00 43.65 3.36
615 959 2.177394 TAACGAAATGCACAGCAGGA 57.823 45.000 0.00 0.00 43.65 3.86
616 960 2.679837 AGATAACGAAATGCACAGCAGG 59.320 45.455 0.00 0.00 43.65 4.85
617 961 4.346734 AAGATAACGAAATGCACAGCAG 57.653 40.909 0.00 0.00 43.65 4.24
618 962 4.023279 ACAAAGATAACGAAATGCACAGCA 60.023 37.500 0.00 0.00 44.86 4.41
619 963 4.321745 CACAAAGATAACGAAATGCACAGC 59.678 41.667 0.00 0.00 0.00 4.40
620 964 4.853196 CCACAAAGATAACGAAATGCACAG 59.147 41.667 0.00 0.00 0.00 3.66
621 965 4.793071 CCACAAAGATAACGAAATGCACA 58.207 39.130 0.00 0.00 0.00 4.57
622 966 3.608073 GCCACAAAGATAACGAAATGCAC 59.392 43.478 0.00 0.00 0.00 4.57
623 967 3.366883 GGCCACAAAGATAACGAAATGCA 60.367 43.478 0.00 0.00 0.00 3.96
631 975 1.745653 GCTCCAGGCCACAAAGATAAC 59.254 52.381 5.01 0.00 34.27 1.89
719 1063 5.241506 TCATTGTCCAATCAGAAAACTGACC 59.758 40.000 0.00 0.00 36.05 4.02
759 1103 3.960571 AGCTGTGATTTCACTGGCTAAT 58.039 40.909 21.04 6.74 46.01 1.73
870 1215 8.824781 TGGAGAAGCGTATATATAATAGTCGTC 58.175 37.037 0.00 0.00 0.00 4.20
878 1227 8.554528 GCGTATAGTGGAGAAGCGTATATATAA 58.445 37.037 0.00 0.00 0.00 0.98
911 1260 2.259917 TGCTTGGTGAGGAGAGATTGA 58.740 47.619 0.00 0.00 0.00 2.57
914 1263 2.475155 TGATGCTTGGTGAGGAGAGAT 58.525 47.619 0.00 0.00 0.00 2.75
916 1265 2.027377 AGTTGATGCTTGGTGAGGAGAG 60.027 50.000 0.00 0.00 0.00 3.20
917 1266 1.980765 AGTTGATGCTTGGTGAGGAGA 59.019 47.619 0.00 0.00 0.00 3.71
918 1267 2.082231 CAGTTGATGCTTGGTGAGGAG 58.918 52.381 0.00 0.00 0.00 3.69
980 1337 4.555689 CATCCTCCCAAATTTAATCCCCA 58.444 43.478 0.00 0.00 0.00 4.96
983 1340 4.835056 CCTCCATCCTCCCAAATTTAATCC 59.165 45.833 0.00 0.00 0.00 3.01
1053 1410 2.645838 TGCTATCCATGGAGAAAGCC 57.354 50.000 29.56 18.65 31.51 4.35
1068 1425 1.519234 CCTTGCGTCGCTCATGCTA 60.519 57.895 19.50 0.00 37.96 3.49
1095 1452 1.070445 CCTCCGAGGCATCATGACC 59.930 63.158 0.18 0.00 0.00 4.02
1146 1503 3.686128 AGATTTCTCATTCTCGTCGTCG 58.314 45.455 0.00 0.00 38.55 5.12
1243 1600 5.254115 CCCATCTCATATTCTCATGCATGT 58.746 41.667 25.43 9.58 0.00 3.21
1248 1605 4.571369 AGCCCCATCTCATATTCTCATG 57.429 45.455 0.00 0.00 0.00 3.07
1249 1606 4.323333 CGAAGCCCCATCTCATATTCTCAT 60.323 45.833 0.00 0.00 0.00 2.90
1250 1607 3.007290 CGAAGCCCCATCTCATATTCTCA 59.993 47.826 0.00 0.00 0.00 3.27
1251 1608 3.594134 CGAAGCCCCATCTCATATTCTC 58.406 50.000 0.00 0.00 0.00 2.87
1252 1609 3.692257 CGAAGCCCCATCTCATATTCT 57.308 47.619 0.00 0.00 0.00 2.40
1271 1628 3.319755 ACAAAAAGCATCCAAATCAGCG 58.680 40.909 0.00 0.00 0.00 5.18
1285 1643 3.406682 GCCATCGCCTGACAAAAAG 57.593 52.632 0.00 0.00 0.00 2.27
1298 1656 1.452108 CCCCAAGAACTCGGCCATC 60.452 63.158 2.24 0.00 0.00 3.51
1421 1779 1.428219 CGACGCCACTATCACGACT 59.572 57.895 0.00 0.00 0.00 4.18
1430 1788 3.923864 TGGAACAGCGACGCCACT 61.924 61.111 17.79 0.00 0.00 4.00
1583 1941 3.094498 GGGCCCGGGTGGTAGATT 61.094 66.667 24.63 0.00 36.04 2.40
1711 2069 2.824041 CTTTGGGATCGGTGGCGG 60.824 66.667 0.00 0.00 0.00 6.13
1743 2101 6.101734 AGTCTGAGAGATAATTTAATGGGGCA 59.898 38.462 0.00 0.00 0.00 5.36
1745 2103 7.659390 GTGAGTCTGAGAGATAATTTAATGGGG 59.341 40.741 0.00 0.00 0.00 4.96
1746 2104 8.428063 AGTGAGTCTGAGAGATAATTTAATGGG 58.572 37.037 0.00 0.00 0.00 4.00
1747 2105 9.258826 CAGTGAGTCTGAGAGATAATTTAATGG 57.741 37.037 0.00 0.00 46.27 3.16
1748 2106 9.258826 CCAGTGAGTCTGAGAGATAATTTAATG 57.741 37.037 0.00 0.00 46.27 1.90
1753 2111 4.961730 AGCCAGTGAGTCTGAGAGATAATT 59.038 41.667 0.00 0.00 46.27 1.40
1766 2124 1.872197 GAGTGAGCGAGCCAGTGAGT 61.872 60.000 0.00 0.00 0.00 3.41
1771 2129 1.445754 CAGTGAGTGAGCGAGCCAG 60.446 63.158 0.00 0.00 0.00 4.85
1774 2132 1.011451 GTTCCAGTGAGTGAGCGAGC 61.011 60.000 0.00 0.00 0.00 5.03
1778 2136 0.952984 GGCAGTTCCAGTGAGTGAGC 60.953 60.000 0.00 0.00 34.01 4.26
1789 2147 4.864704 TTAAAGACCATTTGGCAGTTCC 57.135 40.909 0.00 0.00 39.32 3.62
1803 2177 5.586643 CCAGCTCCTTCACCTATTTAAAGAC 59.413 44.000 0.00 0.00 0.00 3.01
1902 2341 6.387465 TCATAGGAAAACAACTGTAGAGTCG 58.613 40.000 0.00 0.00 0.00 4.18
1930 2369 8.006298 TGATCACAACTAAACATTTTCAACCT 57.994 30.769 0.00 0.00 0.00 3.50
1932 2371 8.216453 GCATGATCACAACTAAACATTTTCAAC 58.784 33.333 0.00 0.00 0.00 3.18
2300 2798 7.260603 AGGCTGTATTTTGATGATAAAACTGC 58.739 34.615 0.00 0.00 32.86 4.40
2307 2805 8.835734 ACCCATATAGGCTGTATTTTGATGATA 58.164 33.333 0.45 0.00 35.39 2.15
2320 2818 5.247110 AGTGTATCAGAACCCATATAGGCTG 59.753 44.000 0.00 0.00 35.39 4.85
2326 2824 6.747414 TTGCTAGTGTATCAGAACCCATAT 57.253 37.500 0.00 0.00 0.00 1.78
2335 2833 9.713740 GAGAATTTTGAATTGCTAGTGTATCAG 57.286 33.333 0.00 0.00 0.00 2.90
2336 2834 9.230122 TGAGAATTTTGAATTGCTAGTGTATCA 57.770 29.630 0.00 0.00 0.00 2.15
2362 2860 3.512724 TCGAAACCCGGAAGACTTAGATT 59.487 43.478 0.73 0.00 39.14 2.40
2378 2876 2.092838 CGAACTTGAGGAGCATCGAAAC 59.907 50.000 0.00 0.00 39.20 2.78
2379 2877 2.288825 ACGAACTTGAGGAGCATCGAAA 60.289 45.455 0.00 0.00 39.20 3.46
2381 2879 0.888619 ACGAACTTGAGGAGCATCGA 59.111 50.000 0.00 0.00 39.20 3.59
2395 2893 1.792006 ATTCAACCCGACAGACGAAC 58.208 50.000 0.00 0.00 45.77 3.95
2405 2903 1.134788 AGCTCCGTCTAATTCAACCCG 60.135 52.381 0.00 0.00 0.00 5.28
2426 2924 1.502231 CCGGCATGAATCTAAGTCGG 58.498 55.000 0.00 0.00 0.00 4.79
2431 2929 0.836606 TGGAGCCGGCATGAATCTAA 59.163 50.000 31.54 6.83 0.00 2.10
2460 2958 1.197036 GACGTGAAACCCTAAGCTTGC 59.803 52.381 9.86 0.00 0.00 4.01
2481 2979 2.507547 TCGTTGTCGCATACGCCC 60.508 61.111 0.00 0.00 39.84 6.13
2489 2987 1.007336 ACACCGATTCTCGTTGTCGC 61.007 55.000 0.00 0.00 41.65 5.19
2509 3007 5.186198 CCTTGAATCGGTCTGAATAACCTT 58.814 41.667 0.00 0.00 34.45 3.50
2523 3021 4.447724 CGTCACCATATAACCCTTGAATCG 59.552 45.833 0.00 0.00 0.00 3.34
2536 3034 2.435805 AGAGCCACAATCGTCACCATAT 59.564 45.455 0.00 0.00 0.00 1.78
2539 3037 0.320683 CAGAGCCACAATCGTCACCA 60.321 55.000 0.00 0.00 0.00 4.17
2550 3048 2.046507 CCAGCACCTCAGAGCCAC 60.047 66.667 0.00 0.00 0.00 5.01
2551 3049 2.527624 ACCAGCACCTCAGAGCCA 60.528 61.111 0.00 0.00 0.00 4.75
2556 3054 4.065321 CTAATAAGGACCAGCACCTCAG 57.935 50.000 0.00 0.00 36.67 3.35
2575 3073 1.290955 CGTCGTTTCAGTGCCCCTA 59.709 57.895 0.00 0.00 0.00 3.53
2657 3165 7.706100 AAACCCTAGTTTTATTCCGCATTTA 57.294 32.000 0.00 0.00 43.82 1.40
2720 3228 6.513806 AGCATAAGTTGTTGATGCACATTA 57.486 33.333 10.22 0.00 46.78 1.90
2751 3260 4.153475 TCTTGCTATCGCTTGGTTGTTTAC 59.847 41.667 0.00 0.00 36.97 2.01
2764 3273 8.527488 CGCTTGAAGTTATATATCTTGCTATCG 58.473 37.037 10.19 4.86 0.00 2.92
2843 3354 2.546789 TCATCATCTCAACATGCATCGC 59.453 45.455 0.00 0.00 0.00 4.58
2847 3358 5.704053 GGATACATCATCATCTCAACATGCA 59.296 40.000 0.00 0.00 35.11 3.96
2895 3406 9.219603 CATTCTCATCGCCCTAATAAAGATTAA 57.780 33.333 0.00 0.00 0.00 1.40
2904 3415 2.158769 TGTGCATTCTCATCGCCCTAAT 60.159 45.455 0.00 0.00 0.00 1.73
2905 3416 1.209261 TGTGCATTCTCATCGCCCTAA 59.791 47.619 0.00 0.00 0.00 2.69
2909 3422 1.862815 GCATTGTGCATTCTCATCGCC 60.863 52.381 0.00 0.00 44.26 5.54
2935 3448 1.134491 ACGGTGGCCTAGTAGCATTTC 60.134 52.381 3.32 0.00 0.00 2.17
2942 3455 2.176364 AGGAGAATACGGTGGCCTAGTA 59.824 50.000 3.32 6.14 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.