Multiple sequence alignment - TraesCS6D01G071700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G071700 chr6D 100.000 4861 0 0 1 4861 36251567 36256427 0.000000e+00 8977
1 TraesCS6D01G071700 chr6D 86.076 316 26 2 43 340 472404111 472403796 1.690000e-84 324
2 TraesCS6D01G071700 chr6D 86.250 160 21 1 155 314 380957936 380958094 6.470000e-39 172
3 TraesCS6D01G071700 chr6A 94.705 2852 94 21 976 3799 40297844 40300666 0.000000e+00 4377
4 TraesCS6D01G071700 chr6A 96.364 165 6 0 166 330 70029996 70029832 6.200000e-69 272
5 TraesCS6D01G071700 chr6A 93.793 145 5 3 3831 3971 40300793 40300937 1.060000e-51 215
6 TraesCS6D01G071700 chr6A 84.756 164 20 3 552 712 615240243 615240082 5.040000e-35 159
7 TraesCS6D01G071700 chr6A 96.296 81 3 0 898 978 40297738 40297818 3.050000e-27 134
8 TraesCS6D01G071700 chr6A 80.337 178 31 2 164 341 536585816 536585989 1.100000e-26 132
9 TraesCS6D01G071700 chr6B 94.989 2774 103 14 976 3727 75941413 75944172 0.000000e+00 4320
10 TraesCS6D01G071700 chr6B 95.498 422 17 2 433 853 75940806 75941226 0.000000e+00 673
11 TraesCS6D01G071700 chr6B 90.805 435 29 3 3961 4386 215143171 215143603 5.460000e-159 571
12 TraesCS6D01G071700 chr6B 98.131 107 2 0 872 978 75941281 75941387 2.310000e-43 187
13 TraesCS6D01G071700 chr5D 88.230 2209 202 30 1072 3269 406415427 406417588 0.000000e+00 2586
14 TraesCS6D01G071700 chr5D 86.735 1357 145 21 1888 3240 417828016 417829341 0.000000e+00 1476
15 TraesCS6D01G071700 chr5D 91.871 529 39 3 1226 1752 417827201 417827727 0.000000e+00 736
16 TraesCS6D01G071700 chr5D 85.253 217 30 2 534 749 59290926 59291141 6.330000e-54 222
17 TraesCS6D01G071700 chr1D 87.895 2214 223 31 1098 3296 440718424 440720607 0.000000e+00 2562
18 TraesCS6D01G071700 chr1D 97.758 892 20 0 3952 4843 50871205 50870314 0.000000e+00 1537
19 TraesCS6D01G071700 chr1D 98.333 60 1 0 976 1035 432650785 432650844 6.650000e-19 106
20 TraesCS6D01G071700 chr5B 87.913 2209 222 24 1072 3269 487437627 487439801 0.000000e+00 2558
21 TraesCS6D01G071700 chr5B 86.165 1395 152 23 1879 3267 505276256 505277615 0.000000e+00 1469
22 TraesCS6D01G071700 chr5B 85.961 1389 150 24 1879 3264 505379240 505380586 0.000000e+00 1443
23 TraesCS6D01G071700 chr5B 78.618 304 30 22 450 727 325095867 325095573 8.370000e-38 169
24 TraesCS6D01G071700 chr5A 87.856 2215 204 35 1072 3268 512059527 512061694 0.000000e+00 2540
25 TraesCS6D01G071700 chr5A 86.960 1342 135 24 1932 3267 532740684 532741991 0.000000e+00 1472
26 TraesCS6D01G071700 chr5A 91.743 545 33 4 3953 4485 499359936 499360480 0.000000e+00 747
27 TraesCS6D01G071700 chr1A 87.726 2216 217 34 1098 3296 537347817 537345640 0.000000e+00 2534
28 TraesCS6D01G071700 chr1A 97.245 363 9 1 4482 4843 557996539 557996177 8.940000e-172 614
29 TraesCS6D01G071700 chr1A 87.218 133 7 6 3831 3962 475298863 475298986 5.070000e-30 143
30 TraesCS6D01G071700 chr1B 87.246 2211 237 29 1098 3296 598190652 598192829 0.000000e+00 2479
31 TraesCS6D01G071700 chr7D 87.255 2040 219 28 1226 3240 509632418 509630395 0.000000e+00 2289
32 TraesCS6D01G071700 chr7D 97.228 902 16 2 3950 4843 517323557 517322657 0.000000e+00 1519
33 TraesCS6D01G071700 chr7D 97.410 888 15 1 3964 4843 366749483 366748596 0.000000e+00 1506
34 TraesCS6D01G071700 chr7D 87.042 355 27 8 3 339 579909759 579910112 2.750000e-102 383
35 TraesCS6D01G071700 chr7D 84.314 153 20 3 191 342 235480150 235480299 3.920000e-31 147
36 TraesCS6D01G071700 chr7B 86.085 2156 232 36 1104 3240 538053825 538051719 0.000000e+00 2257
37 TraesCS6D01G071700 chr7B 84.285 1349 184 22 1878 3221 685360453 685359128 0.000000e+00 1291
38 TraesCS6D01G071700 chr7B 91.743 436 27 2 3960 4386 54216942 54216507 9.010000e-167 597
39 TraesCS6D01G071700 chr7B 84.872 390 47 10 451 837 427398619 427398239 2.750000e-102 383
40 TraesCS6D01G071700 chr7B 81.081 185 26 6 543 724 184981892 184982070 6.560000e-29 139
41 TraesCS6D01G071700 chr4D 97.333 900 16 1 3952 4843 36468726 36469625 0.000000e+00 1522
42 TraesCS6D01G071700 chr3D 97.303 890 16 1 3962 4843 351929035 351929924 0.000000e+00 1504
43 TraesCS6D01G071700 chr3D 96.214 898 20 5 3960 4843 380269029 380268132 0.000000e+00 1458
44 TraesCS6D01G071700 chr3D 95.747 870 16 3 3988 4843 405513323 405512461 0.000000e+00 1382
45 TraesCS6D01G071700 chr4A 83.858 1462 159 29 1498 2922 114527917 114529338 0.000000e+00 1321
46 TraesCS6D01G071700 chr2A 92.336 535 30 3 3962 4485 177987580 177987046 0.000000e+00 750
47 TraesCS6D01G071700 chr2A 97.245 363 9 1 4482 4843 177986792 177986430 8.940000e-172 614
48 TraesCS6D01G071700 chr4B 95.195 437 19 1 4382 4816 508525968 508525532 0.000000e+00 689
49 TraesCS6D01G071700 chr4B 83.623 403 42 15 2799 3183 9395913 9396309 1.660000e-94 357
50 TraesCS6D01G071700 chrUn 90.847 437 29 3 3961 4386 306641322 306640886 4.220000e-160 575
51 TraesCS6D01G071700 chrUn 85.432 405 44 11 450 850 281572127 281572520 1.630000e-109 407
52 TraesCS6D01G071700 chrUn 85.965 285 30 8 551 830 243886607 243886886 3.680000e-76 296
53 TraesCS6D01G071700 chrUn 85.965 285 30 8 551 830 474132018 474131739 3.680000e-76 296
54 TraesCS6D01G071700 chr2B 91.964 336 26 1 1 336 219572289 219571955 2.050000e-128 470
55 TraesCS6D01G071700 chr2D 86.479 355 29 8 3 339 88308525 88308878 5.940000e-99 372
56 TraesCS6D01G071700 chr3A 86.061 165 18 4 550 712 463820853 463821014 6.470000e-39 172
57 TraesCS6D01G071700 chr3A 84.106 151 20 3 191 340 657308789 657308936 5.070000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G071700 chr6D 36251567 36256427 4860 False 8977.000000 8977 100.000000 1 4861 1 chr6D.!!$F1 4860
1 TraesCS6D01G071700 chr6A 40297738 40300937 3199 False 1575.333333 4377 94.931333 898 3971 3 chr6A.!!$F2 3073
2 TraesCS6D01G071700 chr6B 75940806 75944172 3366 False 1726.666667 4320 96.206000 433 3727 3 chr6B.!!$F2 3294
3 TraesCS6D01G071700 chr5D 406415427 406417588 2161 False 2586.000000 2586 88.230000 1072 3269 1 chr5D.!!$F2 2197
4 TraesCS6D01G071700 chr5D 417827201 417829341 2140 False 1106.000000 1476 89.303000 1226 3240 2 chr5D.!!$F3 2014
5 TraesCS6D01G071700 chr1D 440718424 440720607 2183 False 2562.000000 2562 87.895000 1098 3296 1 chr1D.!!$F2 2198
6 TraesCS6D01G071700 chr1D 50870314 50871205 891 True 1537.000000 1537 97.758000 3952 4843 1 chr1D.!!$R1 891
7 TraesCS6D01G071700 chr5B 487437627 487439801 2174 False 2558.000000 2558 87.913000 1072 3269 1 chr5B.!!$F1 2197
8 TraesCS6D01G071700 chr5B 505276256 505277615 1359 False 1469.000000 1469 86.165000 1879 3267 1 chr5B.!!$F2 1388
9 TraesCS6D01G071700 chr5B 505379240 505380586 1346 False 1443.000000 1443 85.961000 1879 3264 1 chr5B.!!$F3 1385
10 TraesCS6D01G071700 chr5A 512059527 512061694 2167 False 2540.000000 2540 87.856000 1072 3268 1 chr5A.!!$F2 2196
11 TraesCS6D01G071700 chr5A 532740684 532741991 1307 False 1472.000000 1472 86.960000 1932 3267 1 chr5A.!!$F3 1335
12 TraesCS6D01G071700 chr5A 499359936 499360480 544 False 747.000000 747 91.743000 3953 4485 1 chr5A.!!$F1 532
13 TraesCS6D01G071700 chr1A 537345640 537347817 2177 True 2534.000000 2534 87.726000 1098 3296 1 chr1A.!!$R1 2198
14 TraesCS6D01G071700 chr1B 598190652 598192829 2177 False 2479.000000 2479 87.246000 1098 3296 1 chr1B.!!$F1 2198
15 TraesCS6D01G071700 chr7D 509630395 509632418 2023 True 2289.000000 2289 87.255000 1226 3240 1 chr7D.!!$R2 2014
16 TraesCS6D01G071700 chr7D 517322657 517323557 900 True 1519.000000 1519 97.228000 3950 4843 1 chr7D.!!$R3 893
17 TraesCS6D01G071700 chr7D 366748596 366749483 887 True 1506.000000 1506 97.410000 3964 4843 1 chr7D.!!$R1 879
18 TraesCS6D01G071700 chr7B 538051719 538053825 2106 True 2257.000000 2257 86.085000 1104 3240 1 chr7B.!!$R3 2136
19 TraesCS6D01G071700 chr7B 685359128 685360453 1325 True 1291.000000 1291 84.285000 1878 3221 1 chr7B.!!$R4 1343
20 TraesCS6D01G071700 chr4D 36468726 36469625 899 False 1522.000000 1522 97.333000 3952 4843 1 chr4D.!!$F1 891
21 TraesCS6D01G071700 chr3D 351929035 351929924 889 False 1504.000000 1504 97.303000 3962 4843 1 chr3D.!!$F1 881
22 TraesCS6D01G071700 chr3D 380268132 380269029 897 True 1458.000000 1458 96.214000 3960 4843 1 chr3D.!!$R1 883
23 TraesCS6D01G071700 chr3D 405512461 405513323 862 True 1382.000000 1382 95.747000 3988 4843 1 chr3D.!!$R2 855
24 TraesCS6D01G071700 chr4A 114527917 114529338 1421 False 1321.000000 1321 83.858000 1498 2922 1 chr4A.!!$F1 1424
25 TraesCS6D01G071700 chr2A 177986430 177987580 1150 True 682.000000 750 94.790500 3962 4843 2 chr2A.!!$R1 881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.032615 TGGGCTGGTTGGACAAGTTT 60.033 50.0 0.00 0.0 0.0 2.66 F
823 825 0.038618 TGTCGAGGTGATGTCGTTGG 60.039 55.0 0.00 0.0 38.6 3.77 F
1053 1119 0.558220 TCCTCCCGTCAGATCATCCT 59.442 55.0 0.00 0.0 0.0 3.24 F
2253 2526 1.537814 CCACTACACGTACCAGGCCA 61.538 60.0 5.01 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1053 1119 0.898789 GATCGGGCTCGGGGAAGATA 60.899 60.000 5.94 0.0 36.95 1.98 R
1781 1907 3.058160 CTGAAGGTGGCCTTGGCG 61.058 66.667 3.32 0.0 44.82 5.69 R
2612 2890 3.364441 GTGCCGTTCATGCTGCCA 61.364 61.111 0.00 0.0 0.00 4.92 R
3878 4342 0.102481 CTAATCCTGTACGGCGCACT 59.898 55.000 10.83 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.865865 GCTGTGGCTATCCCTGAC 57.134 61.111 0.00 0.00 35.22 3.51
40 41 1.227380 GCTGTGGCTATCCCTGACG 60.227 63.158 0.00 0.00 35.22 4.35
41 42 1.676678 GCTGTGGCTATCCCTGACGA 61.677 60.000 0.00 0.00 35.22 4.20
42 43 0.387202 CTGTGGCTATCCCTGACGAG 59.613 60.000 0.00 0.00 0.00 4.18
43 44 1.068250 GTGGCTATCCCTGACGAGC 59.932 63.158 0.00 0.00 0.00 5.03
44 45 2.336809 GGCTATCCCTGACGAGCG 59.663 66.667 0.00 0.00 35.71 5.03
45 46 2.194212 GGCTATCCCTGACGAGCGA 61.194 63.158 0.00 0.00 35.71 4.93
46 47 1.008309 GCTATCCCTGACGAGCGAC 60.008 63.158 0.00 0.00 0.00 5.19
47 48 1.725557 GCTATCCCTGACGAGCGACA 61.726 60.000 0.00 0.00 0.00 4.35
48 49 0.738975 CTATCCCTGACGAGCGACAA 59.261 55.000 0.00 0.00 0.00 3.18
49 50 0.738975 TATCCCTGACGAGCGACAAG 59.261 55.000 0.00 0.00 0.00 3.16
82 83 4.834453 CGAGCTGCAGAGGGCCTG 62.834 72.222 20.43 0.00 45.67 4.85
83 84 4.486503 GAGCTGCAGAGGGCCTGG 62.487 72.222 20.43 3.58 43.13 4.45
85 86 4.792804 GCTGCAGAGGGCCTGGAC 62.793 72.222 20.43 0.00 43.13 4.02
86 87 4.463879 CTGCAGAGGGCCTGGACG 62.464 72.222 12.95 0.00 43.13 4.79
97 98 4.087892 CTGGACGCCTGGACCCTG 62.088 72.222 0.00 0.00 0.00 4.45
117 118 2.352915 CGACGAGCTCCGCATCTC 60.353 66.667 8.47 0.00 43.32 2.75
118 119 2.026879 GACGAGCTCCGCATCTCC 59.973 66.667 8.47 0.00 43.32 3.71
119 120 3.492311 GACGAGCTCCGCATCTCCC 62.492 68.421 8.47 0.00 43.32 4.30
120 121 3.222855 CGAGCTCCGCATCTCCCT 61.223 66.667 8.47 0.00 0.00 4.20
121 122 2.733945 GAGCTCCGCATCTCCCTC 59.266 66.667 0.87 0.00 0.00 4.30
122 123 3.206211 GAGCTCCGCATCTCCCTCG 62.206 68.421 0.87 0.00 0.00 4.63
123 124 3.532155 GCTCCGCATCTCCCTCGT 61.532 66.667 0.00 0.00 0.00 4.18
124 125 3.082579 GCTCCGCATCTCCCTCGTT 62.083 63.158 0.00 0.00 0.00 3.85
125 126 1.517832 CTCCGCATCTCCCTCGTTT 59.482 57.895 0.00 0.00 0.00 3.60
126 127 0.807667 CTCCGCATCTCCCTCGTTTG 60.808 60.000 0.00 0.00 0.00 2.93
127 128 1.218047 CCGCATCTCCCTCGTTTGA 59.782 57.895 0.00 0.00 0.00 2.69
128 129 0.179073 CCGCATCTCCCTCGTTTGAT 60.179 55.000 0.00 0.00 0.00 2.57
129 130 1.656652 CGCATCTCCCTCGTTTGATT 58.343 50.000 0.00 0.00 0.00 2.57
130 131 2.483013 CCGCATCTCCCTCGTTTGATTA 60.483 50.000 0.00 0.00 0.00 1.75
131 132 2.540101 CGCATCTCCCTCGTTTGATTAC 59.460 50.000 0.00 0.00 0.00 1.89
132 133 2.540101 GCATCTCCCTCGTTTGATTACG 59.460 50.000 0.00 0.00 42.68 3.18
133 134 2.953466 TCTCCCTCGTTTGATTACGG 57.047 50.000 0.00 0.00 41.67 4.02
134 135 1.134907 TCTCCCTCGTTTGATTACGGC 60.135 52.381 0.00 0.00 41.67 5.68
135 136 0.108041 TCCCTCGTTTGATTACGGCC 60.108 55.000 0.00 0.00 41.67 6.13
136 137 0.107848 CCCTCGTTTGATTACGGCCT 60.108 55.000 0.00 0.00 41.67 5.19
137 138 1.287425 CCTCGTTTGATTACGGCCTC 58.713 55.000 0.00 0.00 41.67 4.70
138 139 1.287425 CTCGTTTGATTACGGCCTCC 58.713 55.000 0.00 0.00 41.67 4.30
150 151 3.459063 GCCTCCGACGGCTAGGTT 61.459 66.667 19.72 0.00 46.63 3.50
151 152 3.015312 GCCTCCGACGGCTAGGTTT 62.015 63.158 19.72 0.00 46.63 3.27
152 153 1.141234 CCTCCGACGGCTAGGTTTC 59.859 63.158 9.66 0.00 0.00 2.78
153 154 1.226603 CTCCGACGGCTAGGTTTCG 60.227 63.158 9.66 0.00 0.00 3.46
154 155 1.930908 CTCCGACGGCTAGGTTTCGT 61.931 60.000 9.66 0.00 39.99 3.85
155 156 1.804326 CCGACGGCTAGGTTTCGTG 60.804 63.158 0.00 0.00 37.25 4.35
156 157 1.804326 CGACGGCTAGGTTTCGTGG 60.804 63.158 0.00 0.00 37.25 4.94
157 158 2.047560 ACGGCTAGGTTTCGTGGC 60.048 61.111 0.00 0.00 35.70 5.01
158 159 2.818274 CGGCTAGGTTTCGTGGCC 60.818 66.667 0.00 0.00 39.43 5.36
159 160 2.818274 GGCTAGGTTTCGTGGCCG 60.818 66.667 0.00 0.00 33.30 6.13
160 161 2.818274 GCTAGGTTTCGTGGCCGG 60.818 66.667 0.00 0.00 33.95 6.13
161 162 2.818274 CTAGGTTTCGTGGCCGGC 60.818 66.667 21.18 21.18 33.95 6.13
162 163 3.310860 CTAGGTTTCGTGGCCGGCT 62.311 63.158 28.56 5.16 33.95 5.52
163 164 3.599285 TAGGTTTCGTGGCCGGCTG 62.599 63.158 28.56 16.81 33.95 4.85
178 179 3.420606 CTGCTCCTGCGTGTGCTG 61.421 66.667 1.84 0.00 43.34 4.41
184 185 3.349006 CTGCGTGTGCTGGTGGAC 61.349 66.667 0.00 0.00 43.34 4.02
185 186 3.814615 CTGCGTGTGCTGGTGGACT 62.815 63.158 0.00 0.00 43.34 3.85
186 187 3.044305 GCGTGTGCTGGTGGACTC 61.044 66.667 0.00 0.00 38.39 3.36
187 188 2.734723 CGTGTGCTGGTGGACTCG 60.735 66.667 0.00 0.00 42.75 4.18
188 189 2.421739 GTGTGCTGGTGGACTCGT 59.578 61.111 0.00 0.00 35.45 4.18
189 190 1.956170 GTGTGCTGGTGGACTCGTG 60.956 63.158 0.00 0.00 35.45 4.35
190 191 2.357517 GTGCTGGTGGACTCGTGG 60.358 66.667 0.00 0.00 0.00 4.94
191 192 2.842462 TGCTGGTGGACTCGTGGT 60.842 61.111 0.00 0.00 0.00 4.16
192 193 2.048127 GCTGGTGGACTCGTGGTC 60.048 66.667 3.43 3.43 43.79 4.02
193 194 2.258591 CTGGTGGACTCGTGGTCG 59.741 66.667 5.53 0.00 45.35 4.79
194 195 3.916392 CTGGTGGACTCGTGGTCGC 62.916 68.421 5.53 2.36 45.35 5.19
195 196 4.736896 GGTGGACTCGTGGTCGCC 62.737 72.222 5.53 6.53 45.35 5.54
196 197 3.681835 GTGGACTCGTGGTCGCCT 61.682 66.667 5.53 0.00 45.35 5.52
197 198 2.034532 TGGACTCGTGGTCGCCTA 59.965 61.111 5.53 0.00 45.35 3.93
198 199 1.604308 TGGACTCGTGGTCGCCTAA 60.604 57.895 5.53 0.00 45.35 2.69
199 200 0.968901 TGGACTCGTGGTCGCCTAAT 60.969 55.000 5.53 0.00 45.35 1.73
200 201 0.175073 GGACTCGTGGTCGCCTAATT 59.825 55.000 5.53 0.00 45.35 1.40
201 202 1.405121 GGACTCGTGGTCGCCTAATTT 60.405 52.381 5.53 0.00 45.35 1.82
202 203 1.659098 GACTCGTGGTCGCCTAATTTG 59.341 52.381 0.00 0.00 35.07 2.32
203 204 0.373716 CTCGTGGTCGCCTAATTTGC 59.626 55.000 0.00 0.00 36.96 3.68
204 205 0.036765 TCGTGGTCGCCTAATTTGCT 60.037 50.000 0.00 0.00 36.96 3.91
205 206 0.802494 CGTGGTCGCCTAATTTGCTT 59.198 50.000 0.00 0.00 0.00 3.91
206 207 2.004017 CGTGGTCGCCTAATTTGCTTA 58.996 47.619 0.00 0.00 0.00 3.09
207 208 2.030457 CGTGGTCGCCTAATTTGCTTAG 59.970 50.000 0.00 0.00 37.22 2.18
208 209 3.267483 GTGGTCGCCTAATTTGCTTAGA 58.733 45.455 0.00 0.00 39.43 2.10
209 210 3.877508 GTGGTCGCCTAATTTGCTTAGAT 59.122 43.478 0.00 0.00 39.43 1.98
210 211 3.876914 TGGTCGCCTAATTTGCTTAGATG 59.123 43.478 0.00 0.00 39.43 2.90
211 212 3.251004 GGTCGCCTAATTTGCTTAGATGG 59.749 47.826 0.00 0.00 39.43 3.51
212 213 3.251004 GTCGCCTAATTTGCTTAGATGGG 59.749 47.826 0.00 0.00 39.43 4.00
213 214 2.030805 CGCCTAATTTGCTTAGATGGGC 60.031 50.000 0.00 0.00 39.43 5.36
214 215 3.225940 GCCTAATTTGCTTAGATGGGCT 58.774 45.455 0.00 0.00 39.43 5.19
215 216 3.005155 GCCTAATTTGCTTAGATGGGCTG 59.995 47.826 0.00 0.00 39.43 4.85
216 217 3.571401 CCTAATTTGCTTAGATGGGCTGG 59.429 47.826 0.00 0.00 39.43 4.85
217 218 2.834638 ATTTGCTTAGATGGGCTGGT 57.165 45.000 0.00 0.00 0.00 4.00
218 219 2.603075 TTTGCTTAGATGGGCTGGTT 57.397 45.000 0.00 0.00 0.00 3.67
219 220 1.838112 TTGCTTAGATGGGCTGGTTG 58.162 50.000 0.00 0.00 0.00 3.77
220 221 0.034186 TGCTTAGATGGGCTGGTTGG 60.034 55.000 0.00 0.00 0.00 3.77
221 222 0.255890 GCTTAGATGGGCTGGTTGGA 59.744 55.000 0.00 0.00 0.00 3.53
222 223 2.019156 GCTTAGATGGGCTGGTTGGAC 61.019 57.143 0.00 0.00 0.00 4.02
223 224 1.281867 CTTAGATGGGCTGGTTGGACA 59.718 52.381 0.00 0.00 0.00 4.02
224 225 1.367346 TAGATGGGCTGGTTGGACAA 58.633 50.000 0.00 0.00 0.00 3.18
225 226 0.038744 AGATGGGCTGGTTGGACAAG 59.961 55.000 0.00 0.00 0.00 3.16
226 227 0.251341 GATGGGCTGGTTGGACAAGT 60.251 55.000 0.00 0.00 0.00 3.16
227 228 0.188342 ATGGGCTGGTTGGACAAGTT 59.812 50.000 0.00 0.00 0.00 2.66
228 229 0.032615 TGGGCTGGTTGGACAAGTTT 60.033 50.000 0.00 0.00 0.00 2.66
229 230 1.119684 GGGCTGGTTGGACAAGTTTT 58.880 50.000 0.00 0.00 0.00 2.43
230 231 1.484653 GGGCTGGTTGGACAAGTTTTT 59.515 47.619 0.00 0.00 0.00 1.94
231 232 2.483013 GGGCTGGTTGGACAAGTTTTTC 60.483 50.000 0.00 0.00 0.00 2.29
232 233 2.430694 GGCTGGTTGGACAAGTTTTTCT 59.569 45.455 0.00 0.00 0.00 2.52
233 234 3.634910 GGCTGGTTGGACAAGTTTTTCTA 59.365 43.478 0.00 0.00 0.00 2.10
234 235 4.261614 GGCTGGTTGGACAAGTTTTTCTAG 60.262 45.833 0.00 0.00 0.00 2.43
235 236 4.261614 GCTGGTTGGACAAGTTTTTCTAGG 60.262 45.833 0.00 0.00 0.00 3.02
236 237 3.634910 TGGTTGGACAAGTTTTTCTAGGC 59.365 43.478 0.00 0.00 0.00 3.93
237 238 3.889538 GGTTGGACAAGTTTTTCTAGGCT 59.110 43.478 0.00 0.00 0.00 4.58
238 239 4.261614 GGTTGGACAAGTTTTTCTAGGCTG 60.262 45.833 0.00 0.00 0.00 4.85
239 240 3.486383 TGGACAAGTTTTTCTAGGCTGG 58.514 45.455 0.00 0.00 0.00 4.85
240 241 2.820197 GGACAAGTTTTTCTAGGCTGGG 59.180 50.000 0.00 0.00 0.00 4.45
241 242 2.229062 GACAAGTTTTTCTAGGCTGGGC 59.771 50.000 0.00 0.00 0.00 5.36
251 252 2.043046 GGCTGGGCCTGCCAAATA 60.043 61.111 39.95 2.41 46.69 1.40
252 253 1.458209 GGCTGGGCCTGCCAAATAT 60.458 57.895 39.95 0.00 46.69 1.28
253 254 1.050421 GGCTGGGCCTGCCAAATATT 61.050 55.000 39.95 0.00 46.69 1.28
254 255 0.390492 GCTGGGCCTGCCAAATATTC 59.610 55.000 23.51 0.00 37.98 1.75
255 256 2.031097 GCTGGGCCTGCCAAATATTCT 61.031 52.381 23.51 0.00 37.98 2.40
256 257 1.684983 CTGGGCCTGCCAAATATTCTG 59.315 52.381 10.86 0.00 37.98 3.02
257 258 1.287442 TGGGCCTGCCAAATATTCTGA 59.713 47.619 10.86 0.00 37.98 3.27
258 259 2.292126 TGGGCCTGCCAAATATTCTGAA 60.292 45.455 10.86 0.00 37.98 3.02
259 260 2.363359 GGGCCTGCCAAATATTCTGAAG 59.637 50.000 10.86 0.00 37.98 3.02
260 261 2.223900 GGCCTGCCAAATATTCTGAAGC 60.224 50.000 2.58 0.00 35.81 3.86
261 262 2.223900 GCCTGCCAAATATTCTGAAGCC 60.224 50.000 0.00 0.00 0.00 4.35
262 263 2.363359 CCTGCCAAATATTCTGAAGCCC 59.637 50.000 0.00 0.00 0.00 5.19
263 264 3.025978 CTGCCAAATATTCTGAAGCCCA 58.974 45.455 0.00 0.00 0.00 5.36
264 265 3.025978 TGCCAAATATTCTGAAGCCCAG 58.974 45.455 0.00 0.00 44.27 4.45
265 266 3.026694 GCCAAATATTCTGAAGCCCAGT 58.973 45.455 0.00 0.00 43.38 4.00
266 267 4.207165 GCCAAATATTCTGAAGCCCAGTA 58.793 43.478 0.00 0.00 43.38 2.74
267 268 4.036852 GCCAAATATTCTGAAGCCCAGTAC 59.963 45.833 0.00 0.00 43.38 2.73
268 269 5.440610 CCAAATATTCTGAAGCCCAGTACT 58.559 41.667 0.00 0.00 43.38 2.73
269 270 6.591935 CCAAATATTCTGAAGCCCAGTACTA 58.408 40.000 0.00 0.00 43.38 1.82
270 271 7.054124 CCAAATATTCTGAAGCCCAGTACTAA 58.946 38.462 0.00 0.00 43.38 2.24
271 272 7.721399 CCAAATATTCTGAAGCCCAGTACTAAT 59.279 37.037 0.00 0.00 43.38 1.73
272 273 9.125026 CAAATATTCTGAAGCCCAGTACTAATT 57.875 33.333 0.00 0.00 43.38 1.40
273 274 9.700831 AAATATTCTGAAGCCCAGTACTAATTT 57.299 29.630 0.00 0.00 43.38 1.82
274 275 9.700831 AATATTCTGAAGCCCAGTACTAATTTT 57.299 29.630 0.00 0.00 43.38 1.82
275 276 9.700831 ATATTCTGAAGCCCAGTACTAATTTTT 57.299 29.630 0.00 0.00 43.38 1.94
276 277 7.448748 TTCTGAAGCCCAGTACTAATTTTTC 57.551 36.000 0.00 0.00 43.38 2.29
277 278 6.779860 TCTGAAGCCCAGTACTAATTTTTCT 58.220 36.000 0.00 0.00 43.38 2.52
278 279 7.231467 TCTGAAGCCCAGTACTAATTTTTCTT 58.769 34.615 0.00 0.00 43.38 2.52
279 280 7.724061 TCTGAAGCCCAGTACTAATTTTTCTTT 59.276 33.333 0.00 0.00 43.38 2.52
280 281 8.245195 TGAAGCCCAGTACTAATTTTTCTTTT 57.755 30.769 0.00 0.00 0.00 2.27
281 282 8.357402 TGAAGCCCAGTACTAATTTTTCTTTTC 58.643 33.333 0.00 0.00 0.00 2.29
282 283 6.909909 AGCCCAGTACTAATTTTTCTTTTCG 58.090 36.000 0.00 0.00 0.00 3.46
283 284 5.571741 GCCCAGTACTAATTTTTCTTTTCGC 59.428 40.000 0.00 0.00 0.00 4.70
284 285 5.793457 CCCAGTACTAATTTTTCTTTTCGCG 59.207 40.000 0.00 0.00 0.00 5.87
285 286 6.347888 CCCAGTACTAATTTTTCTTTTCGCGA 60.348 38.462 3.71 3.71 0.00 5.87
286 287 7.073265 CCAGTACTAATTTTTCTTTTCGCGAA 58.927 34.615 19.38 19.38 0.00 4.70
287 288 7.268447 CCAGTACTAATTTTTCTTTTCGCGAAG 59.732 37.037 22.21 11.76 0.00 3.79
288 289 7.797123 CAGTACTAATTTTTCTTTTCGCGAAGT 59.203 33.333 22.21 13.65 0.00 3.01
289 290 8.340443 AGTACTAATTTTTCTTTTCGCGAAGTT 58.660 29.630 22.21 4.70 0.00 2.66
290 291 7.376530 ACTAATTTTTCTTTTCGCGAAGTTG 57.623 32.000 22.21 15.25 0.00 3.16
291 292 5.635549 AATTTTTCTTTTCGCGAAGTTGG 57.364 34.783 22.21 12.82 0.00 3.77
292 293 4.358494 TTTTTCTTTTCGCGAAGTTGGA 57.642 36.364 22.21 14.78 0.00 3.53
293 294 3.602390 TTTCTTTTCGCGAAGTTGGAG 57.398 42.857 22.21 14.87 0.00 3.86
294 295 1.508632 TCTTTTCGCGAAGTTGGAGG 58.491 50.000 22.21 7.45 0.00 4.30
295 296 0.517316 CTTTTCGCGAAGTTGGAGGG 59.483 55.000 22.21 3.76 0.00 4.30
296 297 0.179040 TTTTCGCGAAGTTGGAGGGT 60.179 50.000 22.21 0.00 0.00 4.34
297 298 0.680618 TTTCGCGAAGTTGGAGGGTA 59.319 50.000 22.21 0.00 0.00 3.69
298 299 0.245539 TTCGCGAAGTTGGAGGGTAG 59.754 55.000 19.38 0.00 0.00 3.18
299 300 1.153628 CGCGAAGTTGGAGGGTAGG 60.154 63.158 0.00 0.00 0.00 3.18
300 301 1.449778 GCGAAGTTGGAGGGTAGGC 60.450 63.158 0.00 0.00 0.00 3.93
301 302 1.900545 GCGAAGTTGGAGGGTAGGCT 61.901 60.000 0.00 0.00 0.00 4.58
302 303 0.175989 CGAAGTTGGAGGGTAGGCTC 59.824 60.000 0.00 0.00 0.00 4.70
303 304 0.175989 GAAGTTGGAGGGTAGGCTCG 59.824 60.000 0.00 0.00 0.00 5.03
304 305 0.252103 AAGTTGGAGGGTAGGCTCGA 60.252 55.000 0.00 0.00 0.00 4.04
305 306 0.684805 AGTTGGAGGGTAGGCTCGAG 60.685 60.000 8.45 8.45 0.00 4.04
306 307 2.058595 TTGGAGGGTAGGCTCGAGC 61.059 63.158 29.38 29.38 41.14 5.03
321 322 1.668867 GAGCCTATCGAAGCCTCCC 59.331 63.158 0.00 0.00 0.00 4.30
322 323 0.830023 GAGCCTATCGAAGCCTCCCT 60.830 60.000 0.00 0.00 0.00 4.20
323 324 1.118356 AGCCTATCGAAGCCTCCCTG 61.118 60.000 0.00 0.00 0.00 4.45
324 325 2.053618 CCTATCGAAGCCTCCCTGG 58.946 63.158 0.00 0.00 39.35 4.45
325 326 0.760945 CCTATCGAAGCCTCCCTGGT 60.761 60.000 0.00 0.00 38.35 4.00
326 327 0.390860 CTATCGAAGCCTCCCTGGTG 59.609 60.000 0.00 0.00 38.35 4.17
327 328 1.048724 TATCGAAGCCTCCCTGGTGG 61.049 60.000 0.00 0.00 38.35 4.61
328 329 2.822643 ATCGAAGCCTCCCTGGTGGA 62.823 60.000 8.46 0.00 42.41 4.02
329 330 2.370445 CGAAGCCTCCCTGGTGGAT 61.370 63.158 8.46 0.00 44.07 3.41
330 331 1.915078 CGAAGCCTCCCTGGTGGATT 61.915 60.000 7.46 7.46 44.07 3.01
331 332 0.106967 GAAGCCTCCCTGGTGGATTC 60.107 60.000 16.72 16.72 44.07 2.52
332 333 0.846427 AAGCCTCCCTGGTGGATTCA 60.846 55.000 8.46 0.00 44.07 2.57
333 334 1.077429 GCCTCCCTGGTGGATTCAC 60.077 63.158 8.46 0.00 44.07 3.18
343 344 2.462301 TGGATTCACCACTGCTCCA 58.538 52.632 0.00 0.00 44.64 3.86
344 345 0.994247 TGGATTCACCACTGCTCCAT 59.006 50.000 0.00 0.00 44.64 3.41
345 346 2.195727 TGGATTCACCACTGCTCCATA 58.804 47.619 0.00 0.00 44.64 2.74
346 347 2.575735 TGGATTCACCACTGCTCCATAA 59.424 45.455 0.00 0.00 44.64 1.90
347 348 3.209410 GGATTCACCACTGCTCCATAAG 58.791 50.000 0.00 0.00 38.79 1.73
348 349 3.370953 GGATTCACCACTGCTCCATAAGT 60.371 47.826 0.00 0.00 38.79 2.24
349 350 2.768253 TCACCACTGCTCCATAAGTG 57.232 50.000 0.00 0.00 42.83 3.16
350 351 1.977854 TCACCACTGCTCCATAAGTGT 59.022 47.619 2.48 0.00 41.85 3.55
351 352 2.371841 TCACCACTGCTCCATAAGTGTT 59.628 45.455 2.48 0.00 41.85 3.32
352 353 3.149196 CACCACTGCTCCATAAGTGTTT 58.851 45.455 2.48 0.00 41.85 2.83
353 354 3.569701 CACCACTGCTCCATAAGTGTTTT 59.430 43.478 2.48 0.00 41.85 2.43
354 355 4.759693 CACCACTGCTCCATAAGTGTTTTA 59.240 41.667 2.48 0.00 41.85 1.52
355 356 5.240623 CACCACTGCTCCATAAGTGTTTTAA 59.759 40.000 2.48 0.00 41.85 1.52
356 357 6.010219 ACCACTGCTCCATAAGTGTTTTAAT 58.990 36.000 2.48 0.00 41.85 1.40
357 358 6.071952 ACCACTGCTCCATAAGTGTTTTAATG 60.072 38.462 2.48 0.00 41.85 1.90
358 359 6.071952 CCACTGCTCCATAAGTGTTTTAATGT 60.072 38.462 2.48 0.00 41.85 2.71
359 360 7.370383 CACTGCTCCATAAGTGTTTTAATGTT 58.630 34.615 0.00 0.00 39.17 2.71
360 361 8.511321 CACTGCTCCATAAGTGTTTTAATGTTA 58.489 33.333 0.00 0.00 39.17 2.41
361 362 9.243105 ACTGCTCCATAAGTGTTTTAATGTTAT 57.757 29.630 0.00 0.00 0.00 1.89
362 363 9.722056 CTGCTCCATAAGTGTTTTAATGTTATC 57.278 33.333 0.00 0.00 0.00 1.75
363 364 9.237187 TGCTCCATAAGTGTTTTAATGTTATCA 57.763 29.630 0.00 0.00 0.00 2.15
367 368 9.801873 CCATAAGTGTTTTAATGTTATCAAGGG 57.198 33.333 0.00 0.00 0.00 3.95
368 369 9.801873 CATAAGTGTTTTAATGTTATCAAGGGG 57.198 33.333 0.00 0.00 0.00 4.79
369 370 9.762381 ATAAGTGTTTTAATGTTATCAAGGGGA 57.238 29.630 0.00 0.00 0.00 4.81
370 371 8.664669 AAGTGTTTTAATGTTATCAAGGGGAT 57.335 30.769 0.00 0.00 40.14 3.85
371 372 8.293699 AGTGTTTTAATGTTATCAAGGGGATC 57.706 34.615 0.00 0.00 37.44 3.36
372 373 7.067008 AGTGTTTTAATGTTATCAAGGGGATCG 59.933 37.037 0.00 0.00 37.44 3.69
373 374 6.320164 TGTTTTAATGTTATCAAGGGGATCGG 59.680 38.462 0.00 0.00 37.44 4.18
374 375 5.640158 TTAATGTTATCAAGGGGATCGGT 57.360 39.130 0.00 0.00 37.44 4.69
375 376 3.771577 ATGTTATCAAGGGGATCGGTC 57.228 47.619 0.00 0.00 37.44 4.79
376 377 1.411246 TGTTATCAAGGGGATCGGTCG 59.589 52.381 0.00 0.00 37.44 4.79
377 378 0.391597 TTATCAAGGGGATCGGTCGC 59.608 55.000 3.73 3.73 37.44 5.19
385 386 2.005971 GGGATCGGTCGCCATATAAC 57.994 55.000 0.26 0.00 0.00 1.89
386 387 1.625616 GGATCGGTCGCCATATAACG 58.374 55.000 0.00 0.00 0.00 3.18
387 388 1.068055 GGATCGGTCGCCATATAACGT 60.068 52.381 0.00 0.00 0.00 3.99
388 389 1.983605 GATCGGTCGCCATATAACGTG 59.016 52.381 0.00 0.00 0.00 4.49
389 390 0.740149 TCGGTCGCCATATAACGTGT 59.260 50.000 0.00 0.00 0.00 4.49
390 391 1.134753 TCGGTCGCCATATAACGTGTT 59.865 47.619 0.00 0.00 0.00 3.32
391 392 2.357323 TCGGTCGCCATATAACGTGTTA 59.643 45.455 0.00 0.00 0.00 2.41
392 393 2.468777 CGGTCGCCATATAACGTGTTAC 59.531 50.000 0.00 0.00 0.00 2.50
407 408 5.414599 CGTGTTACGCCATAAAAACATTG 57.585 39.130 0.00 0.00 34.62 2.82
408 409 5.147865 CGTGTTACGCCATAAAAACATTGA 58.852 37.500 0.00 0.00 34.62 2.57
409 410 5.282778 CGTGTTACGCCATAAAAACATTGAG 59.717 40.000 0.00 0.00 34.62 3.02
410 411 6.146898 GTGTTACGCCATAAAAACATTGAGT 58.853 36.000 0.00 0.00 34.62 3.41
411 412 7.299586 GTGTTACGCCATAAAAACATTGAGTA 58.700 34.615 0.00 0.00 34.62 2.59
412 413 7.966204 GTGTTACGCCATAAAAACATTGAGTAT 59.034 33.333 0.00 0.00 34.62 2.12
413 414 8.178964 TGTTACGCCATAAAAACATTGAGTATC 58.821 33.333 0.00 0.00 0.00 2.24
431 432 8.073467 TGAGTATCACATACCATAACAAGTCA 57.927 34.615 0.00 0.00 42.56 3.41
432 433 8.704668 TGAGTATCACATACCATAACAAGTCAT 58.295 33.333 0.00 0.00 42.56 3.06
433 434 9.547753 GAGTATCACATACCATAACAAGTCATT 57.452 33.333 0.00 0.00 36.40 2.57
434 435 9.905713 AGTATCACATACCATAACAAGTCATTT 57.094 29.630 0.00 0.00 36.40 2.32
480 481 6.992715 ACTCACTCTACTAAAAAGCACAATGT 59.007 34.615 0.00 0.00 0.00 2.71
485 486 3.888934 ACTAAAAAGCACAATGTCGCTG 58.111 40.909 10.18 2.32 38.82 5.18
494 495 1.337260 ACAATGTCGCTGACTCACTCC 60.337 52.381 9.49 0.00 33.15 3.85
495 496 0.247736 AATGTCGCTGACTCACTCCC 59.752 55.000 9.49 0.00 33.15 4.30
506 507 2.985139 GACTCACTCCCGACTAAAAACG 59.015 50.000 0.00 0.00 0.00 3.60
512 513 1.150827 CCCGACTAAAAACGGTCACC 58.849 55.000 0.00 0.00 46.53 4.02
794 796 4.043310 TGAAGATGGACAAAAGGACTCCAT 59.957 41.667 0.00 0.00 45.75 3.41
801 803 4.706962 GGACAAAAGGACTCCATTAGCAAT 59.293 41.667 0.00 0.00 0.00 3.56
823 825 0.038618 TGTCGAGGTGATGTCGTTGG 60.039 55.000 0.00 0.00 38.60 3.77
881 919 9.844790 CAATCAGAACAAAATTGCATTCTACTA 57.155 29.630 0.00 0.00 30.28 1.82
1053 1119 0.558220 TCCTCCCGTCAGATCATCCT 59.442 55.000 0.00 0.00 0.00 3.24
1058 1127 4.085733 CTCCCGTCAGATCATCCTATCTT 58.914 47.826 0.00 0.00 33.87 2.40
1797 1923 4.659172 CCGCCAAGGCCACCTTCA 62.659 66.667 5.01 0.00 42.67 3.02
2150 2423 2.125673 CCGGGCTCGTCGTTTGAT 60.126 61.111 4.71 0.00 33.95 2.57
2253 2526 1.537814 CCACTACACGTACCAGGCCA 61.538 60.000 5.01 0.00 0.00 5.36
2450 2728 2.359967 GGAGGACGTGGAGGAAGGG 61.360 68.421 0.00 0.00 0.00 3.95
2612 2890 2.967473 CTCGGTCTGCGACGTGTCT 61.967 63.158 0.00 0.00 32.65 3.41
2840 3120 3.842923 CAGATCCTCCGCACGGCT 61.843 66.667 3.66 0.00 34.68 5.52
3277 3613 9.151471 GTTGTCATCAGCTTAGTTAGAATGTTA 57.849 33.333 0.00 0.00 0.00 2.41
3297 3633 2.973945 AGTGGTGTTCGATTAGCTTCC 58.026 47.619 0.00 0.00 0.00 3.46
3299 3635 2.930682 GTGGTGTTCGATTAGCTTCCTC 59.069 50.000 0.00 0.00 0.00 3.71
3328 3664 4.625742 CAGAATTCGTGGTGTTCGATTAGT 59.374 41.667 0.00 0.00 37.18 2.24
3329 3665 5.120208 CAGAATTCGTGGTGTTCGATTAGTT 59.880 40.000 0.00 0.00 37.18 2.24
3330 3666 5.699458 AGAATTCGTGGTGTTCGATTAGTTT 59.301 36.000 0.00 0.00 37.18 2.66
3342 3678 8.004905 GTGTTCGATTAGTTTCTTCTTCAGAAC 58.995 37.037 0.00 0.00 41.56 3.01
3365 3705 6.604735 CTGTGAACAGCTAGTTTACTTTGT 57.395 37.500 17.94 0.00 44.51 2.83
3410 3750 6.624710 TCGAATTTGAACCAAAATTATGCG 57.375 33.333 0.00 0.00 39.31 4.73
3447 3788 8.697846 ATGTTGAAAATCATATGCTTGAGTTG 57.302 30.769 0.00 0.00 34.45 3.16
3548 3897 0.963962 AAGTTCACCTTGCTGGCATG 59.036 50.000 0.00 0.00 40.22 4.06
3549 3898 1.080298 GTTCACCTTGCTGGCATGC 60.080 57.895 9.90 9.90 40.22 4.06
3550 3899 1.531128 TTCACCTTGCTGGCATGCA 60.531 52.632 21.36 4.79 41.65 3.96
3551 3900 0.901114 TTCACCTTGCTGGCATGCAT 60.901 50.000 21.36 0.00 42.96 3.96
3552 3901 0.901114 TCACCTTGCTGGCATGCATT 60.901 50.000 21.36 0.00 42.96 3.56
3572 3921 0.687354 GGGAGAGCTGTTTCACAGGA 59.313 55.000 6.05 0.00 46.01 3.86
3578 3927 1.032014 GCTGTTTCACAGGAGCCAAA 58.968 50.000 6.05 0.00 46.01 3.28
3593 3943 5.539955 AGGAGCCAAATTGTAATGTTTCTGT 59.460 36.000 0.00 0.00 0.00 3.41
3594 3944 5.634859 GGAGCCAAATTGTAATGTTTCTGTG 59.365 40.000 0.00 0.00 0.00 3.66
3614 3964 0.814457 TGCCAGAACGCACAAACTTT 59.186 45.000 0.00 0.00 32.62 2.66
3615 3965 1.203523 TGCCAGAACGCACAAACTTTT 59.796 42.857 0.00 0.00 32.62 2.27
3713 4068 8.504005 CAGTTTCGTAGGAGAACATTTGTAAAT 58.496 33.333 10.77 0.00 0.00 1.40
3747 4117 3.701040 GCAAAAAGATAAGAGGCCATGGA 59.299 43.478 18.40 0.00 0.00 3.41
3808 4248 6.403309 CGCTAGTATACTCAGATGGCGAAATA 60.403 42.308 9.12 0.00 42.12 1.40
3819 4259 2.627945 TGGCGAAATACTGTGACATCC 58.372 47.619 0.00 0.00 0.00 3.51
3864 4328 1.390565 TTTCCTTCGGGCGACAAAAA 58.609 45.000 0.00 0.00 34.44 1.94
3913 4380 3.309954 GGATTAGAACTCGCAATCACACC 59.690 47.826 8.44 0.00 31.61 4.16
4011 4482 9.344309 CAACGGGTAACAAAAATTATATTTCGT 57.656 29.630 0.00 0.00 39.74 3.85
4035 4506 3.055094 ACTTATCACAATTGCTCCGTCCT 60.055 43.478 5.05 0.00 0.00 3.85
4116 4595 5.587443 TGGTTTTCATCATCATACTGAGCAG 59.413 40.000 0.00 0.00 0.00 4.24
4145 4624 2.424684 AGAAAGGAGAGGTGGAGGTT 57.575 50.000 0.00 0.00 0.00 3.50
4177 4656 3.845781 TGAGGGCCATCTTAATGACTC 57.154 47.619 19.75 5.18 34.61 3.36
4183 4662 2.483714 GCCATCTTAATGACTCGAGCCA 60.484 50.000 13.61 8.48 34.61 4.75
4398 4889 0.169009 GTCAGAACGCAATGCCTTCC 59.831 55.000 12.15 0.00 0.00 3.46
4673 5422 7.839680 AATCACATGGACCTTTTTAAAGAGT 57.160 32.000 5.15 0.86 38.28 3.24
4843 5592 9.810231 AACAATTTTAAATGCATGAACGATTTC 57.190 25.926 0.00 0.00 0.00 2.17
4844 5593 9.206870 ACAATTTTAAATGCATGAACGATTTCT 57.793 25.926 0.00 0.00 32.36 2.52
4845 5594 9.679596 CAATTTTAAATGCATGAACGATTTCTC 57.320 29.630 0.00 0.00 32.36 2.87
4846 5595 8.984891 ATTTTAAATGCATGAACGATTTCTCA 57.015 26.923 0.00 0.00 32.36 3.27
4847 5596 7.795431 TTTAAATGCATGAACGATTTCTCAC 57.205 32.000 0.00 0.00 32.36 3.51
4848 5597 4.361451 AATGCATGAACGATTTCTCACC 57.639 40.909 0.00 0.00 32.36 4.02
4849 5598 2.777094 TGCATGAACGATTTCTCACCA 58.223 42.857 0.00 0.00 32.36 4.17
4850 5599 3.145286 TGCATGAACGATTTCTCACCAA 58.855 40.909 0.00 0.00 32.36 3.67
4851 5600 3.189080 TGCATGAACGATTTCTCACCAAG 59.811 43.478 0.00 0.00 32.36 3.61
4852 5601 3.436704 GCATGAACGATTTCTCACCAAGA 59.563 43.478 0.00 0.00 32.36 3.02
4853 5602 4.436584 GCATGAACGATTTCTCACCAAGAG 60.437 45.833 0.00 0.00 46.14 2.85
4854 5603 4.336889 TGAACGATTTCTCACCAAGAGT 57.663 40.909 0.00 0.00 44.98 3.24
4855 5604 5.462530 TGAACGATTTCTCACCAAGAGTA 57.537 39.130 0.00 0.00 44.98 2.59
4856 5605 5.470368 TGAACGATTTCTCACCAAGAGTAG 58.530 41.667 0.00 0.00 44.98 2.57
4857 5606 3.851098 ACGATTTCTCACCAAGAGTAGC 58.149 45.455 0.00 0.00 44.98 3.58
4858 5607 3.258372 ACGATTTCTCACCAAGAGTAGCA 59.742 43.478 0.00 0.00 44.98 3.49
4859 5608 3.862267 CGATTTCTCACCAAGAGTAGCAG 59.138 47.826 0.00 0.00 44.98 4.24
4860 5609 3.685139 TTTCTCACCAAGAGTAGCAGG 57.315 47.619 0.00 0.00 44.98 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.126307 CGCTGTCGTCCAGTCCAG 60.126 66.667 6.70 0.00 43.55 3.86
4 5 3.343788 CTCCGCTGTCGTCCAGTCC 62.344 68.421 6.70 0.00 43.55 3.85
6 7 4.057428 GCTCCGCTGTCGTCCAGT 62.057 66.667 6.70 0.00 43.55 4.00
7 8 3.753434 AGCTCCGCTGTCGTCCAG 61.753 66.667 1.25 1.25 44.53 3.86
22 23 1.227380 CGTCAGGGATAGCCACAGC 60.227 63.158 0.00 0.00 40.32 4.40
23 24 0.387202 CTCGTCAGGGATAGCCACAG 59.613 60.000 0.00 0.00 35.15 3.66
24 25 1.676678 GCTCGTCAGGGATAGCCACA 61.677 60.000 0.00 0.00 35.15 4.17
25 26 1.068250 GCTCGTCAGGGATAGCCAC 59.932 63.158 0.00 0.00 35.15 5.01
26 27 2.490148 CGCTCGTCAGGGATAGCCA 61.490 63.158 0.00 0.00 34.38 4.75
27 28 2.194212 TCGCTCGTCAGGGATAGCC 61.194 63.158 0.00 0.00 36.69 3.93
28 29 1.008309 GTCGCTCGTCAGGGATAGC 60.008 63.158 0.00 0.00 43.12 2.97
29 30 0.738975 TTGTCGCTCGTCAGGGATAG 59.261 55.000 0.00 0.00 43.12 2.08
30 31 0.738975 CTTGTCGCTCGTCAGGGATA 59.261 55.000 0.00 0.00 43.12 2.59
31 32 1.513158 CTTGTCGCTCGTCAGGGAT 59.487 57.895 0.00 0.00 43.12 3.85
32 33 2.962569 CTTGTCGCTCGTCAGGGA 59.037 61.111 0.00 0.00 39.23 4.20
33 34 2.811317 GCTTGTCGCTCGTCAGGG 60.811 66.667 1.76 0.00 35.14 4.45
34 35 3.175240 CGCTTGTCGCTCGTCAGG 61.175 66.667 0.00 0.00 36.13 3.86
35 36 2.126850 TCGCTTGTCGCTCGTCAG 60.127 61.111 0.00 0.00 38.27 3.51
36 37 2.428569 GTCGCTTGTCGCTCGTCA 60.429 61.111 0.00 0.00 38.27 4.35
37 38 3.524759 CGTCGCTTGTCGCTCGTC 61.525 66.667 0.00 0.00 38.27 4.20
65 66 4.834453 CAGGCCCTCTGCAGCTCG 62.834 72.222 9.47 0.00 43.89 5.03
66 67 4.486503 CCAGGCCCTCTGCAGCTC 62.487 72.222 9.47 0.00 43.89 4.09
68 69 4.792804 GTCCAGGCCCTCTGCAGC 62.793 72.222 9.47 0.00 43.89 5.25
69 70 4.463879 CGTCCAGGCCCTCTGCAG 62.464 72.222 7.63 7.63 43.89 4.41
80 81 4.087892 CAGGGTCCAGGCGTCCAG 62.088 72.222 0.00 0.00 0.00 3.86
107 108 0.807667 CAAACGAGGGAGATGCGGAG 60.808 60.000 0.00 0.00 0.00 4.63
108 109 1.218047 CAAACGAGGGAGATGCGGA 59.782 57.895 0.00 0.00 0.00 5.54
109 110 0.179073 ATCAAACGAGGGAGATGCGG 60.179 55.000 0.00 0.00 0.00 5.69
110 111 1.656652 AATCAAACGAGGGAGATGCG 58.343 50.000 0.00 0.00 0.00 4.73
111 112 2.540101 CGTAATCAAACGAGGGAGATGC 59.460 50.000 0.00 0.00 45.68 3.91
112 113 3.123804 CCGTAATCAAACGAGGGAGATG 58.876 50.000 0.00 0.00 45.68 2.90
113 114 2.483188 GCCGTAATCAAACGAGGGAGAT 60.483 50.000 0.00 0.00 45.68 2.75
114 115 1.134907 GCCGTAATCAAACGAGGGAGA 60.135 52.381 0.00 0.00 45.68 3.71
115 116 1.287425 GCCGTAATCAAACGAGGGAG 58.713 55.000 0.00 0.00 45.68 4.30
116 117 0.108041 GGCCGTAATCAAACGAGGGA 60.108 55.000 0.00 0.00 45.68 4.20
117 118 0.107848 AGGCCGTAATCAAACGAGGG 60.108 55.000 0.00 0.00 45.68 4.30
118 119 1.287425 GAGGCCGTAATCAAACGAGG 58.713 55.000 0.00 0.00 45.68 4.63
119 120 1.287425 GGAGGCCGTAATCAAACGAG 58.713 55.000 0.00 0.00 45.68 4.18
120 121 0.458889 CGGAGGCCGTAATCAAACGA 60.459 55.000 0.00 0.00 45.68 3.85
121 122 2.003672 CGGAGGCCGTAATCAAACG 58.996 57.895 0.00 0.00 42.73 3.60
134 135 1.141234 GAAACCTAGCCGTCGGAGG 59.859 63.158 17.49 16.44 36.36 4.30
135 136 1.226603 CGAAACCTAGCCGTCGGAG 60.227 63.158 17.49 3.96 0.00 4.63
136 137 1.973281 ACGAAACCTAGCCGTCGGA 60.973 57.895 17.49 0.00 37.81 4.55
137 138 1.804326 CACGAAACCTAGCCGTCGG 60.804 63.158 6.99 6.99 37.81 4.79
138 139 1.804326 CCACGAAACCTAGCCGTCG 60.804 63.158 0.00 5.85 39.37 5.12
139 140 2.098831 GCCACGAAACCTAGCCGTC 61.099 63.158 0.00 0.00 33.96 4.79
140 141 2.047560 GCCACGAAACCTAGCCGT 60.048 61.111 0.00 0.00 36.95 5.68
141 142 2.818274 GGCCACGAAACCTAGCCG 60.818 66.667 0.00 0.00 33.18 5.52
142 143 2.818274 CGGCCACGAAACCTAGCC 60.818 66.667 2.24 0.00 44.60 3.93
143 144 2.818274 CCGGCCACGAAACCTAGC 60.818 66.667 2.24 0.00 44.60 3.42
144 145 2.818274 GCCGGCCACGAAACCTAG 60.818 66.667 18.11 0.00 44.60 3.02
145 146 3.315949 AGCCGGCCACGAAACCTA 61.316 61.111 26.15 0.00 44.60 3.08
161 162 3.420606 CAGCACACGCAGGAGCAG 61.421 66.667 0.00 0.00 42.27 4.24
167 168 3.349006 GTCCACCAGCACACGCAG 61.349 66.667 0.00 0.00 42.27 5.18
168 169 3.807631 GAGTCCACCAGCACACGCA 62.808 63.158 0.00 0.00 42.27 5.24
169 170 3.044305 GAGTCCACCAGCACACGC 61.044 66.667 0.00 0.00 38.99 5.34
170 171 2.734723 CGAGTCCACCAGCACACG 60.735 66.667 0.00 0.00 0.00 4.49
171 172 1.956170 CACGAGTCCACCAGCACAC 60.956 63.158 0.00 0.00 0.00 3.82
172 173 2.421314 CACGAGTCCACCAGCACA 59.579 61.111 0.00 0.00 0.00 4.57
173 174 2.357517 CCACGAGTCCACCAGCAC 60.358 66.667 0.00 0.00 0.00 4.40
174 175 2.842462 ACCACGAGTCCACCAGCA 60.842 61.111 0.00 0.00 0.00 4.41
175 176 2.048127 GACCACGAGTCCACCAGC 60.048 66.667 0.00 0.00 39.84 4.85
176 177 2.258591 CGACCACGAGTCCACCAG 59.741 66.667 0.00 0.00 43.08 4.00
177 178 3.986006 GCGACCACGAGTCCACCA 61.986 66.667 0.00 0.00 43.08 4.17
178 179 4.736896 GGCGACCACGAGTCCACC 62.737 72.222 0.00 0.00 43.08 4.61
179 180 1.870055 TTAGGCGACCACGAGTCCAC 61.870 60.000 0.00 0.00 43.08 4.02
180 181 0.968901 ATTAGGCGACCACGAGTCCA 60.969 55.000 0.00 0.00 43.08 4.02
181 182 0.175073 AATTAGGCGACCACGAGTCC 59.825 55.000 0.00 0.00 43.08 3.85
182 183 1.659098 CAAATTAGGCGACCACGAGTC 59.341 52.381 0.00 0.00 42.66 3.36
183 184 1.722011 CAAATTAGGCGACCACGAGT 58.278 50.000 0.00 0.00 42.66 4.18
184 185 0.373716 GCAAATTAGGCGACCACGAG 59.626 55.000 0.00 0.00 42.66 4.18
185 186 0.036765 AGCAAATTAGGCGACCACGA 60.037 50.000 0.00 0.00 42.66 4.35
186 187 0.802494 AAGCAAATTAGGCGACCACG 59.198 50.000 0.00 0.00 42.93 4.94
187 188 3.267483 TCTAAGCAAATTAGGCGACCAC 58.733 45.455 0.00 0.00 41.19 4.16
188 189 3.620427 TCTAAGCAAATTAGGCGACCA 57.380 42.857 0.00 0.00 41.19 4.02
189 190 3.251004 CCATCTAAGCAAATTAGGCGACC 59.749 47.826 0.00 0.00 41.19 4.79
190 191 3.251004 CCCATCTAAGCAAATTAGGCGAC 59.749 47.826 0.00 0.00 41.19 5.19
191 192 3.476552 CCCATCTAAGCAAATTAGGCGA 58.523 45.455 0.00 0.00 41.19 5.54
192 193 2.030805 GCCCATCTAAGCAAATTAGGCG 60.031 50.000 0.00 0.00 41.19 5.52
193 194 3.005155 CAGCCCATCTAAGCAAATTAGGC 59.995 47.826 0.00 0.00 41.19 3.93
194 195 3.571401 CCAGCCCATCTAAGCAAATTAGG 59.429 47.826 0.00 0.00 41.19 2.69
195 196 4.210331 ACCAGCCCATCTAAGCAAATTAG 58.790 43.478 0.00 0.00 42.06 1.73
196 197 4.249638 ACCAGCCCATCTAAGCAAATTA 57.750 40.909 0.00 0.00 0.00 1.40
197 198 3.105959 ACCAGCCCATCTAAGCAAATT 57.894 42.857 0.00 0.00 0.00 1.82
198 199 2.762327 CAACCAGCCCATCTAAGCAAAT 59.238 45.455 0.00 0.00 0.00 2.32
199 200 2.170166 CAACCAGCCCATCTAAGCAAA 58.830 47.619 0.00 0.00 0.00 3.68
200 201 1.616725 CCAACCAGCCCATCTAAGCAA 60.617 52.381 0.00 0.00 0.00 3.91
201 202 0.034186 CCAACCAGCCCATCTAAGCA 60.034 55.000 0.00 0.00 0.00 3.91
202 203 0.255890 TCCAACCAGCCCATCTAAGC 59.744 55.000 0.00 0.00 0.00 3.09
203 204 1.281867 TGTCCAACCAGCCCATCTAAG 59.718 52.381 0.00 0.00 0.00 2.18
204 205 1.367346 TGTCCAACCAGCCCATCTAA 58.633 50.000 0.00 0.00 0.00 2.10
205 206 1.281867 CTTGTCCAACCAGCCCATCTA 59.718 52.381 0.00 0.00 0.00 1.98
206 207 0.038744 CTTGTCCAACCAGCCCATCT 59.961 55.000 0.00 0.00 0.00 2.90
207 208 0.251341 ACTTGTCCAACCAGCCCATC 60.251 55.000 0.00 0.00 0.00 3.51
208 209 0.188342 AACTTGTCCAACCAGCCCAT 59.812 50.000 0.00 0.00 0.00 4.00
209 210 0.032615 AAACTTGTCCAACCAGCCCA 60.033 50.000 0.00 0.00 0.00 5.36
210 211 1.119684 AAAACTTGTCCAACCAGCCC 58.880 50.000 0.00 0.00 0.00 5.19
211 212 2.430694 AGAAAAACTTGTCCAACCAGCC 59.569 45.455 0.00 0.00 0.00 4.85
212 213 3.801114 AGAAAAACTTGTCCAACCAGC 57.199 42.857 0.00 0.00 0.00 4.85
213 214 4.261614 GCCTAGAAAAACTTGTCCAACCAG 60.262 45.833 0.00 0.00 0.00 4.00
214 215 3.634910 GCCTAGAAAAACTTGTCCAACCA 59.365 43.478 0.00 0.00 0.00 3.67
215 216 3.889538 AGCCTAGAAAAACTTGTCCAACC 59.110 43.478 0.00 0.00 0.00 3.77
216 217 4.261614 CCAGCCTAGAAAAACTTGTCCAAC 60.262 45.833 0.00 0.00 0.00 3.77
217 218 3.888930 CCAGCCTAGAAAAACTTGTCCAA 59.111 43.478 0.00 0.00 0.00 3.53
218 219 3.486383 CCAGCCTAGAAAAACTTGTCCA 58.514 45.455 0.00 0.00 0.00 4.02
219 220 2.820197 CCCAGCCTAGAAAAACTTGTCC 59.180 50.000 0.00 0.00 0.00 4.02
220 221 2.229062 GCCCAGCCTAGAAAAACTTGTC 59.771 50.000 0.00 0.00 0.00 3.18
221 222 2.239400 GCCCAGCCTAGAAAAACTTGT 58.761 47.619 0.00 0.00 0.00 3.16
222 223 1.546029 GGCCCAGCCTAGAAAAACTTG 59.454 52.381 0.00 0.00 46.69 3.16
223 224 1.924731 GGCCCAGCCTAGAAAAACTT 58.075 50.000 0.00 0.00 46.69 2.66
224 225 3.672066 GGCCCAGCCTAGAAAAACT 57.328 52.632 0.00 0.00 46.69 2.66
235 236 0.390492 GAATATTTGGCAGGCCCAGC 59.610 55.000 8.02 9.22 46.39 4.85
236 237 1.684983 CAGAATATTTGGCAGGCCCAG 59.315 52.381 8.02 0.00 46.39 4.45
237 238 1.287442 TCAGAATATTTGGCAGGCCCA 59.713 47.619 8.02 0.00 43.51 5.36
238 239 2.071778 TCAGAATATTTGGCAGGCCC 57.928 50.000 8.02 0.00 34.56 5.80
239 240 2.223900 GCTTCAGAATATTTGGCAGGCC 60.224 50.000 2.62 2.62 0.00 5.19
240 241 2.223900 GGCTTCAGAATATTTGGCAGGC 60.224 50.000 0.00 0.00 0.00 4.85
241 242 2.363359 GGGCTTCAGAATATTTGGCAGG 59.637 50.000 0.00 0.00 0.00 4.85
242 243 3.025978 TGGGCTTCAGAATATTTGGCAG 58.974 45.455 0.00 0.00 0.00 4.85
243 244 3.025978 CTGGGCTTCAGAATATTTGGCA 58.974 45.455 2.18 0.00 46.18 4.92
244 245 3.026694 ACTGGGCTTCAGAATATTTGGC 58.973 45.455 13.08 0.00 46.18 4.52
245 246 5.440610 AGTACTGGGCTTCAGAATATTTGG 58.559 41.667 13.08 0.00 46.18 3.28
246 247 8.682936 ATTAGTACTGGGCTTCAGAATATTTG 57.317 34.615 5.39 0.00 46.18 2.32
247 248 9.700831 AAATTAGTACTGGGCTTCAGAATATTT 57.299 29.630 5.39 8.63 46.18 1.40
248 249 9.700831 AAAATTAGTACTGGGCTTCAGAATATT 57.299 29.630 5.39 0.00 46.18 1.28
249 250 9.700831 AAAAATTAGTACTGGGCTTCAGAATAT 57.299 29.630 5.39 1.59 46.18 1.28
250 251 9.174166 GAAAAATTAGTACTGGGCTTCAGAATA 57.826 33.333 5.39 2.48 46.18 1.75
251 252 7.890655 AGAAAAATTAGTACTGGGCTTCAGAAT 59.109 33.333 5.39 0.00 46.18 2.40
252 253 7.231467 AGAAAAATTAGTACTGGGCTTCAGAA 58.769 34.615 5.39 0.00 46.18 3.02
253 254 6.779860 AGAAAAATTAGTACTGGGCTTCAGA 58.220 36.000 5.39 0.00 46.18 3.27
255 256 7.833285 AAAGAAAAATTAGTACTGGGCTTCA 57.167 32.000 5.39 0.00 0.00 3.02
256 257 7.537649 CGAAAAGAAAAATTAGTACTGGGCTTC 59.462 37.037 5.39 2.42 0.00 3.86
257 258 7.368059 CGAAAAGAAAAATTAGTACTGGGCTT 58.632 34.615 5.39 0.00 0.00 4.35
258 259 6.569801 GCGAAAAGAAAAATTAGTACTGGGCT 60.570 38.462 5.39 0.00 0.00 5.19
259 260 5.571741 GCGAAAAGAAAAATTAGTACTGGGC 59.428 40.000 5.39 0.00 0.00 5.36
260 261 5.793457 CGCGAAAAGAAAAATTAGTACTGGG 59.207 40.000 0.00 0.00 0.00 4.45
261 262 6.595794 TCGCGAAAAGAAAAATTAGTACTGG 58.404 36.000 6.20 0.00 0.00 4.00
262 263 7.797123 ACTTCGCGAAAAGAAAAATTAGTACTG 59.203 33.333 23.54 6.74 0.00 2.74
263 264 7.858583 ACTTCGCGAAAAGAAAAATTAGTACT 58.141 30.769 23.54 0.00 0.00 2.73
264 265 8.407458 CAACTTCGCGAAAAGAAAAATTAGTAC 58.593 33.333 23.54 0.00 0.00 2.73
265 266 7.588488 CCAACTTCGCGAAAAGAAAAATTAGTA 59.412 33.333 23.54 0.00 0.00 1.82
266 267 6.416750 CCAACTTCGCGAAAAGAAAAATTAGT 59.583 34.615 23.54 9.41 0.00 2.24
267 268 6.635239 TCCAACTTCGCGAAAAGAAAAATTAG 59.365 34.615 23.54 8.72 0.00 1.73
268 269 6.496571 TCCAACTTCGCGAAAAGAAAAATTA 58.503 32.000 23.54 0.00 0.00 1.40
269 270 5.344884 TCCAACTTCGCGAAAAGAAAAATT 58.655 33.333 23.54 4.51 0.00 1.82
270 271 4.927422 TCCAACTTCGCGAAAAGAAAAAT 58.073 34.783 23.54 0.11 0.00 1.82
271 272 4.347813 CTCCAACTTCGCGAAAAGAAAAA 58.652 39.130 23.54 4.60 0.00 1.94
272 273 3.242936 CCTCCAACTTCGCGAAAAGAAAA 60.243 43.478 23.54 6.19 0.00 2.29
273 274 2.289547 CCTCCAACTTCGCGAAAAGAAA 59.710 45.455 23.54 7.77 0.00 2.52
274 275 1.871039 CCTCCAACTTCGCGAAAAGAA 59.129 47.619 23.54 6.71 0.00 2.52
275 276 1.508632 CCTCCAACTTCGCGAAAAGA 58.491 50.000 23.54 14.87 0.00 2.52
276 277 0.517316 CCCTCCAACTTCGCGAAAAG 59.483 55.000 23.54 14.72 0.00 2.27
277 278 0.179040 ACCCTCCAACTTCGCGAAAA 60.179 50.000 23.54 0.79 0.00 2.29
278 279 0.680618 TACCCTCCAACTTCGCGAAA 59.319 50.000 23.54 6.50 0.00 3.46
279 280 0.245539 CTACCCTCCAACTTCGCGAA 59.754 55.000 22.01 22.01 0.00 4.70
280 281 1.601419 CCTACCCTCCAACTTCGCGA 61.601 60.000 3.71 3.71 0.00 5.87
281 282 1.153628 CCTACCCTCCAACTTCGCG 60.154 63.158 0.00 0.00 0.00 5.87
282 283 1.449778 GCCTACCCTCCAACTTCGC 60.450 63.158 0.00 0.00 0.00 4.70
283 284 0.175989 GAGCCTACCCTCCAACTTCG 59.824 60.000 0.00 0.00 0.00 3.79
284 285 0.175989 CGAGCCTACCCTCCAACTTC 59.824 60.000 0.00 0.00 0.00 3.01
285 286 0.252103 TCGAGCCTACCCTCCAACTT 60.252 55.000 0.00 0.00 0.00 2.66
286 287 0.684805 CTCGAGCCTACCCTCCAACT 60.685 60.000 0.00 0.00 0.00 3.16
287 288 1.817209 CTCGAGCCTACCCTCCAAC 59.183 63.158 0.00 0.00 0.00 3.77
288 289 2.058595 GCTCGAGCCTACCCTCCAA 61.059 63.158 27.22 0.00 34.31 3.53
289 290 2.442272 GCTCGAGCCTACCCTCCA 60.442 66.667 27.22 0.00 34.31 3.86
306 307 0.760945 ACCAGGGAGGCTTCGATAGG 60.761 60.000 0.00 0.00 43.14 2.57
307 308 0.390860 CACCAGGGAGGCTTCGATAG 59.609 60.000 0.00 0.00 43.14 2.08
308 309 1.048724 CCACCAGGGAGGCTTCGATA 61.049 60.000 0.00 0.00 43.14 2.92
309 310 2.370445 CCACCAGGGAGGCTTCGAT 61.370 63.158 0.00 0.00 43.14 3.59
310 311 3.003173 CCACCAGGGAGGCTTCGA 61.003 66.667 0.00 0.00 43.14 3.71
311 312 3.003173 TCCACCAGGGAGGCTTCG 61.003 66.667 0.00 0.00 42.15 3.79
325 326 0.994247 ATGGAGCAGTGGTGAATCCA 59.006 50.000 0.00 0.50 42.27 3.41
326 327 3.209410 CTTATGGAGCAGTGGTGAATCC 58.791 50.000 0.00 0.00 33.59 3.01
327 328 3.624861 CACTTATGGAGCAGTGGTGAATC 59.375 47.826 0.00 0.00 37.37 2.52
328 329 3.009473 ACACTTATGGAGCAGTGGTGAAT 59.991 43.478 0.00 0.00 44.12 2.57
329 330 2.371841 ACACTTATGGAGCAGTGGTGAA 59.628 45.455 0.00 0.00 44.12 3.18
330 331 1.977854 ACACTTATGGAGCAGTGGTGA 59.022 47.619 0.00 0.00 44.12 4.02
331 332 2.479566 ACACTTATGGAGCAGTGGTG 57.520 50.000 0.00 0.00 44.12 4.17
332 333 3.508845 AAACACTTATGGAGCAGTGGT 57.491 42.857 0.00 0.00 43.04 4.16
333 334 5.957842 TTAAAACACTTATGGAGCAGTGG 57.042 39.130 4.82 0.00 44.12 4.00
334 335 6.913170 ACATTAAAACACTTATGGAGCAGTG 58.087 36.000 0.00 0.00 45.15 3.66
335 336 7.524717 AACATTAAAACACTTATGGAGCAGT 57.475 32.000 0.00 0.00 0.00 4.40
336 337 9.722056 GATAACATTAAAACACTTATGGAGCAG 57.278 33.333 0.00 0.00 0.00 4.24
337 338 9.237187 TGATAACATTAAAACACTTATGGAGCA 57.763 29.630 0.00 0.00 0.00 4.26
341 342 9.801873 CCCTTGATAACATTAAAACACTTATGG 57.198 33.333 0.00 0.00 0.00 2.74
342 343 9.801873 CCCCTTGATAACATTAAAACACTTATG 57.198 33.333 0.00 0.00 0.00 1.90
343 344 9.762381 TCCCCTTGATAACATTAAAACACTTAT 57.238 29.630 0.00 0.00 0.00 1.73
344 345 9.762381 ATCCCCTTGATAACATTAAAACACTTA 57.238 29.630 0.00 0.00 0.00 2.24
345 346 8.664669 ATCCCCTTGATAACATTAAAACACTT 57.335 30.769 0.00 0.00 0.00 3.16
346 347 7.067008 CGATCCCCTTGATAACATTAAAACACT 59.933 37.037 0.00 0.00 32.41 3.55
347 348 7.193595 CGATCCCCTTGATAACATTAAAACAC 58.806 38.462 0.00 0.00 32.41 3.32
348 349 6.320164 CCGATCCCCTTGATAACATTAAAACA 59.680 38.462 0.00 0.00 32.41 2.83
349 350 6.320418 ACCGATCCCCTTGATAACATTAAAAC 59.680 38.462 0.00 0.00 32.41 2.43
350 351 6.428295 ACCGATCCCCTTGATAACATTAAAA 58.572 36.000 0.00 0.00 32.41 1.52
351 352 6.008696 ACCGATCCCCTTGATAACATTAAA 57.991 37.500 0.00 0.00 32.41 1.52
352 353 5.617252 GACCGATCCCCTTGATAACATTAA 58.383 41.667 0.00 0.00 32.41 1.40
353 354 4.262292 CGACCGATCCCCTTGATAACATTA 60.262 45.833 0.00 0.00 32.41 1.90
354 355 3.494398 CGACCGATCCCCTTGATAACATT 60.494 47.826 0.00 0.00 32.41 2.71
355 356 2.037251 CGACCGATCCCCTTGATAACAT 59.963 50.000 0.00 0.00 32.41 2.71
356 357 1.411246 CGACCGATCCCCTTGATAACA 59.589 52.381 0.00 0.00 32.41 2.41
357 358 1.872653 GCGACCGATCCCCTTGATAAC 60.873 57.143 0.00 0.00 32.41 1.89
358 359 0.391597 GCGACCGATCCCCTTGATAA 59.608 55.000 0.00 0.00 32.41 1.75
359 360 1.469335 GGCGACCGATCCCCTTGATA 61.469 60.000 0.00 0.00 32.41 2.15
360 361 2.808206 GGCGACCGATCCCCTTGAT 61.808 63.158 0.00 0.00 36.01 2.57
361 362 3.467226 GGCGACCGATCCCCTTGA 61.467 66.667 0.00 0.00 0.00 3.02
362 363 1.754380 TATGGCGACCGATCCCCTTG 61.754 60.000 0.00 0.00 0.00 3.61
363 364 0.836400 ATATGGCGACCGATCCCCTT 60.836 55.000 0.00 0.00 0.00 3.95
364 365 0.040646 TATATGGCGACCGATCCCCT 59.959 55.000 0.00 0.00 0.00 4.79
365 366 0.899720 TTATATGGCGACCGATCCCC 59.100 55.000 0.00 0.00 0.00 4.81
366 367 1.734707 CGTTATATGGCGACCGATCCC 60.735 57.143 0.00 0.00 0.00 3.85
367 368 1.068055 ACGTTATATGGCGACCGATCC 60.068 52.381 7.57 0.00 0.00 3.36
368 369 1.983605 CACGTTATATGGCGACCGATC 59.016 52.381 7.57 0.00 0.00 3.69
369 370 1.338973 ACACGTTATATGGCGACCGAT 59.661 47.619 7.57 0.00 0.00 4.18
370 371 0.740149 ACACGTTATATGGCGACCGA 59.260 50.000 7.57 0.00 0.00 4.69
371 372 1.563111 AACACGTTATATGGCGACCG 58.437 50.000 7.57 0.00 0.00 4.79
372 373 2.468777 CGTAACACGTTATATGGCGACC 59.531 50.000 7.57 0.00 36.74 4.79
373 374 2.097733 GCGTAACACGTTATATGGCGAC 60.098 50.000 7.57 0.00 44.73 5.19
374 375 2.118683 GCGTAACACGTTATATGGCGA 58.881 47.619 7.57 0.00 44.73 5.54
375 376 1.190763 GGCGTAACACGTTATATGGCG 59.809 52.381 7.20 0.00 44.73 5.69
376 377 2.203401 TGGCGTAACACGTTATATGGC 58.797 47.619 13.34 13.34 44.73 4.40
377 378 6.528014 TTTATGGCGTAACACGTTATATGG 57.472 37.500 0.00 0.00 44.73 2.74
378 379 7.903946 TGTTTTTATGGCGTAACACGTTATATG 59.096 33.333 0.00 0.00 44.73 1.78
379 380 7.972527 TGTTTTTATGGCGTAACACGTTATAT 58.027 30.769 0.00 0.00 44.73 0.86
380 381 7.356641 TGTTTTTATGGCGTAACACGTTATA 57.643 32.000 0.00 0.00 44.73 0.98
381 382 6.238610 TGTTTTTATGGCGTAACACGTTAT 57.761 33.333 0.00 0.00 44.73 1.89
382 383 5.663795 TGTTTTTATGGCGTAACACGTTA 57.336 34.783 0.00 0.00 44.73 3.18
383 384 4.548991 TGTTTTTATGGCGTAACACGTT 57.451 36.364 0.00 0.00 44.73 3.99
384 385 4.752661 ATGTTTTTATGGCGTAACACGT 57.247 36.364 0.00 0.00 44.73 4.49
385 386 5.147865 TCAATGTTTTTATGGCGTAACACG 58.852 37.500 0.00 0.00 45.88 4.49
386 387 6.146898 ACTCAATGTTTTTATGGCGTAACAC 58.853 36.000 0.00 0.27 33.77 3.32
387 388 6.320494 ACTCAATGTTTTTATGGCGTAACA 57.680 33.333 0.00 0.00 35.25 2.41
388 389 8.178964 TGATACTCAATGTTTTTATGGCGTAAC 58.821 33.333 0.00 0.00 0.00 2.50
389 390 8.178964 GTGATACTCAATGTTTTTATGGCGTAA 58.821 33.333 0.00 0.00 0.00 3.18
390 391 7.334671 TGTGATACTCAATGTTTTTATGGCGTA 59.665 33.333 0.00 0.00 0.00 4.42
391 392 6.150307 TGTGATACTCAATGTTTTTATGGCGT 59.850 34.615 0.00 0.00 0.00 5.68
392 393 6.550843 TGTGATACTCAATGTTTTTATGGCG 58.449 36.000 0.00 0.00 0.00 5.69
393 394 9.450807 GTATGTGATACTCAATGTTTTTATGGC 57.549 33.333 0.00 0.00 33.00 4.40
394 395 9.950680 GGTATGTGATACTCAATGTTTTTATGG 57.049 33.333 0.00 0.00 36.04 2.74
400 401 9.679661 TGTTATGGTATGTGATACTCAATGTTT 57.320 29.630 0.00 0.00 36.04 2.83
401 402 9.679661 TTGTTATGGTATGTGATACTCAATGTT 57.320 29.630 0.00 0.00 36.04 2.71
402 403 9.330063 CTTGTTATGGTATGTGATACTCAATGT 57.670 33.333 0.00 0.00 36.04 2.71
403 404 9.330063 ACTTGTTATGGTATGTGATACTCAATG 57.670 33.333 0.00 0.00 36.04 2.82
404 405 9.547753 GACTTGTTATGGTATGTGATACTCAAT 57.452 33.333 0.00 0.00 36.04 2.57
405 406 8.536175 TGACTTGTTATGGTATGTGATACTCAA 58.464 33.333 0.00 0.00 36.04 3.02
406 407 8.073467 TGACTTGTTATGGTATGTGATACTCA 57.927 34.615 0.00 0.00 36.04 3.41
407 408 9.547753 AATGACTTGTTATGGTATGTGATACTC 57.452 33.333 0.00 0.00 36.04 2.59
408 409 9.905713 AAATGACTTGTTATGGTATGTGATACT 57.094 29.630 0.00 0.00 36.04 2.12
418 419 9.747898 TCCTTGTTATAAATGACTTGTTATGGT 57.252 29.630 0.00 0.00 0.00 3.55
428 429 9.169468 CGCATTACAATCCTTGTTATAAATGAC 57.831 33.333 13.45 7.12 42.22 3.06
429 430 9.114952 TCGCATTACAATCCTTGTTATAAATGA 57.885 29.630 13.45 0.67 42.22 2.57
430 431 9.169468 GTCGCATTACAATCCTTGTTATAAATG 57.831 33.333 0.00 3.94 42.22 2.32
431 432 9.120538 AGTCGCATTACAATCCTTGTTATAAAT 57.879 29.630 0.00 0.00 42.22 1.40
432 433 8.500753 AGTCGCATTACAATCCTTGTTATAAA 57.499 30.769 0.00 0.00 42.22 1.40
433 434 7.766738 TGAGTCGCATTACAATCCTTGTTATAA 59.233 33.333 0.00 0.00 42.22 0.98
434 435 7.223971 GTGAGTCGCATTACAATCCTTGTTATA 59.776 37.037 0.00 0.00 42.22 0.98
435 436 6.037172 GTGAGTCGCATTACAATCCTTGTTAT 59.963 38.462 0.00 0.00 42.22 1.89
436 437 5.350365 GTGAGTCGCATTACAATCCTTGTTA 59.650 40.000 0.00 0.00 42.22 2.41
437 438 4.154195 GTGAGTCGCATTACAATCCTTGTT 59.846 41.667 0.00 0.00 42.22 2.83
448 449 6.530534 GCTTTTTAGTAGAGTGAGTCGCATTA 59.469 38.462 6.44 0.00 0.00 1.90
480 481 2.033602 TCGGGAGTGAGTCAGCGA 59.966 61.111 0.00 0.00 0.00 4.93
485 486 2.985139 CGTTTTTAGTCGGGAGTGAGTC 59.015 50.000 0.00 0.00 0.00 3.36
495 496 1.193874 GCAGGTGACCGTTTTTAGTCG 59.806 52.381 0.00 0.00 35.71 4.18
506 507 1.009829 CTAAATGCGAGCAGGTGACC 58.990 55.000 3.58 0.00 0.00 4.02
794 796 1.621317 TCACCTCGACACCATTGCTAA 59.379 47.619 0.00 0.00 0.00 3.09
801 803 1.176619 ACGACATCACCTCGACACCA 61.177 55.000 0.00 0.00 35.08 4.17
839 841 7.333174 TGTTCTGATTGCATACAAAACTCGATA 59.667 33.333 9.89 0.00 39.77 2.92
881 919 7.641760 CGTGGTTGTTAAGTTTGGTTATAACT 58.358 34.615 15.05 0.00 37.43 2.24
1053 1119 0.898789 GATCGGGCTCGGGGAAGATA 60.899 60.000 5.94 0.00 36.95 1.98
1058 1127 4.598319 ATCGATCGGGCTCGGGGA 62.598 66.667 16.41 0.80 39.13 4.81
1781 1907 3.058160 CTGAAGGTGGCCTTGGCG 61.058 66.667 3.32 0.00 44.82 5.69
2612 2890 3.364441 GTGCCGTTCATGCTGCCA 61.364 61.111 0.00 0.00 0.00 4.92
3277 3613 2.567615 AGGAAGCTAATCGAACACCACT 59.432 45.455 0.00 0.00 0.00 4.00
3297 3633 4.310769 ACACCACGAATTCTGAAGAAGAG 58.689 43.478 3.52 0.00 37.48 2.85
3299 3635 4.376413 CGAACACCACGAATTCTGAAGAAG 60.376 45.833 3.52 0.00 37.48 2.85
3328 3664 5.065218 GCTGTTCACAGTTCTGAAGAAGAAA 59.935 40.000 8.72 0.52 46.51 2.52
3329 3665 4.572389 GCTGTTCACAGTTCTGAAGAAGAA 59.428 41.667 8.72 0.00 45.45 2.52
3330 3666 4.122776 GCTGTTCACAGTTCTGAAGAAGA 58.877 43.478 8.72 7.76 45.45 2.87
3342 3678 6.604735 ACAAAGTAAACTAGCTGTTCACAG 57.395 37.500 0.00 2.31 46.40 3.66
3435 3776 7.255346 CCAAGCATGATTATCAACTCAAGCATA 60.255 37.037 0.00 0.00 38.27 3.14
3444 3785 5.376625 TCCTACCCAAGCATGATTATCAAC 58.623 41.667 0.00 0.00 0.00 3.18
3447 3788 5.809001 TCATCCTACCCAAGCATGATTATC 58.191 41.667 0.00 0.00 0.00 1.75
3548 3897 1.200948 GTGAAACAGCTCTCCCAATGC 59.799 52.381 0.00 0.00 36.32 3.56
3549 3898 2.507484 TGTGAAACAGCTCTCCCAATG 58.493 47.619 0.00 0.00 45.67 2.82
3550 3899 2.957402 TGTGAAACAGCTCTCCCAAT 57.043 45.000 0.00 0.00 45.67 3.16
3572 3921 5.984926 CACACAGAAACATTACAATTTGGCT 59.015 36.000 0.78 0.00 0.00 4.75
3614 3964 4.866508 ATTCCTCGTTCAGTGTCAGTAA 57.133 40.909 0.00 0.00 0.00 2.24
3615 3965 5.123502 GTCTATTCCTCGTTCAGTGTCAGTA 59.876 44.000 0.00 0.00 0.00 2.74
3713 4068 7.394016 TCTTATCTTTTTGCCATCTGAGTGTA 58.606 34.615 0.00 0.00 0.00 2.90
3795 4165 3.261580 TGTCACAGTATTTCGCCATCTG 58.738 45.455 0.00 0.00 0.00 2.90
3796 4166 3.610040 TGTCACAGTATTTCGCCATCT 57.390 42.857 0.00 0.00 0.00 2.90
3797 4167 3.248602 GGATGTCACAGTATTTCGCCATC 59.751 47.826 0.00 0.00 0.00 3.51
3799 4169 2.627945 GGATGTCACAGTATTTCGCCA 58.372 47.619 0.00 0.00 0.00 5.69
3808 4248 1.188219 ACCTCTGCGGATGTCACAGT 61.188 55.000 0.00 0.00 36.31 3.55
3819 4259 5.409826 AGACAAATAAGAAAGAACCTCTGCG 59.590 40.000 0.00 0.00 0.00 5.18
3877 4341 0.179121 TAATCCTGTACGGCGCACTG 60.179 55.000 10.83 10.87 0.00 3.66
3878 4342 0.102481 CTAATCCTGTACGGCGCACT 59.898 55.000 10.83 0.00 0.00 4.40
3913 4380 1.153745 GGAGCGTGTGCAGACTAGG 60.154 63.158 12.66 0.00 46.23 3.02
4011 4482 3.932710 GACGGAGCAATTGTGATAAGTGA 59.067 43.478 7.40 0.00 0.00 3.41
4035 4506 6.994496 GGATGAATAGGTTGATGACAATGAGA 59.006 38.462 0.00 0.00 38.32 3.27
4116 4595 3.198853 ACCTCTCCTTTCTAACTGGCATC 59.801 47.826 0.00 0.00 0.00 3.91
4145 4624 0.916809 GGCCCTCAAAGTAGCCCTTA 59.083 55.000 0.00 0.00 39.60 2.69
4177 4656 2.599082 GAGTAAAACAGATCGTGGCTCG 59.401 50.000 1.94 1.94 41.41 5.03
4183 4662 4.238514 GCACTCAGAGTAAAACAGATCGT 58.761 43.478 1.67 0.00 0.00 3.73
4398 4889 1.672363 CATCATGGGATCAACCACGTG 59.328 52.381 9.08 9.08 44.72 4.49
4790 5539 8.145122 AGTGTGGTTTTAAGAAAAGTTTTCACA 58.855 29.630 26.06 17.41 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.