AutoCloner

Multiple sequence alignment - TraesCS6D01G071000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G071000	chr6D	100.000	2942	0	0	1	2942	35887252	35884311	0.000000e+00	5433.0
1	TraesCS6D01G071000	chr6D	97.503	881	21	1	1	880	465514554	465515434	0.000000e+00	1504.0
2	TraesCS6D01G071000	chr6D	82.536	481	52	24	887	1360	35667620	35667165	7.640000e-106	394.0
3	TraesCS6D01G071000	chr6D	83.386	319	41	11	1037	1349	36323919	36324231	4.800000e-73	285.0
4	TraesCS6D01G071000	chr6D	73.660	429	96	12	1706	2124	27553144	27552723	1.830000e-32	150.0
5	TraesCS6D01G071000	chr6D	72.414	493	98	26	1796	2271	28304365	28303894	3.980000e-24	122.0
6	TraesCS6D01G071000	chr6B	91.484	1597	100	15	1357	2942	75509977	75508406	0.000000e+00	2163.0
7	TraesCS6D01G071000	chr6B	76.994	1417	237	61	1363	2739	75423090	75421723	0.000000e+00	728.0
8	TraesCS6D01G071000	chr6B	79.260	1027	162	29	1357	2354	75268061	75267057	0.000000e+00	669.0
9	TraesCS6D01G071000	chr6B	85.259	502	50	21	875	1360	75514726	75514233	2.040000e-136	496.0
10	TraesCS6D01G071000	chr6B	85.651	453	51	10	916	1360	75268546	75268100	5.740000e-127	464.0
11	TraesCS6D01G071000	chr6B	88.235	357	39	2	1007	1360	75510366	75510010	9.750000e-115	424.0
12	TraesCS6D01G071000	chr6B	83.957	374	43	10	984	1356	76153380	76153023	2.810000e-90	342.0
13	TraesCS6D01G071000	chr2D	97.514	885	19	3	1	883	37232579	37231696	0.000000e+00	1509.0
14	TraesCS6D01G071000	chr5D	96.629	890	24	3	1	890	421856890	421857773	0.000000e+00	1472.0
15	TraesCS6D01G071000	chr5D	86.900	229	19	2	654	881	491663313	491663531	2.260000e-61	246.0
16	TraesCS6D01G071000	chr7B	91.796	646	26	8	1	645	624166828	624166209	0.000000e+00	874.0
17	TraesCS6D01G071000	chr1A	91.654	647	27	11	1	645	22058918	22058297	0.000000e+00	870.0
18	TraesCS6D01G071000	chr7A	91.525	649	27	12	2	647	502384046	502384669	0.000000e+00	869.0
19	TraesCS6D01G071000	chr7A	87.368	190	21	3	694	880	555476236	555476047	6.390000e-52	215.0
20	TraesCS6D01G071000	chr4B	91.486	646	29	10	1	645	531247430	531248050	0.000000e+00	865.0
21	TraesCS6D01G071000	chr4B	90.853	645	31	8	1	645	74667690	74667074	0.000000e+00	839.0
22	TraesCS6D01G071000	chr2A	91.318	645	31	9	1	645	580723136	580722517	0.000000e+00	857.0
23	TraesCS6D01G071000	chr2A	91.176	646	30	11	1	645	589541830	589541211	0.000000e+00	852.0
24	TraesCS6D01G071000	chr5B	90.867	646	30	9	1	645	327794571	327793954	0.000000e+00	839.0
25	TraesCS6D01G071000	chr5B	88.060	67	8	0	817	883	109768258	109768192	2.430000e-11	80.5
26	TraesCS6D01G071000	chr6A	90.824	643	34	10	3	645	479269559	479268942	0.000000e+00	837.0
27	TraesCS6D01G071000	chr6A	78.754	353	52	14	1018	1357	30455118	30455460	6.390000e-52	215.0
28	TraesCS6D01G071000	chr6A	72.936	436	93	21	1713	2134	30035749	30035325	8.560000e-26	128.0
29	TraesCS6D01G071000	chr6A	84.746	59	6	2	1298	1355	45365829	45365773	4.100000e-04	56.5
30	TraesCS6D01G071000	chr2B	90.966	642	29	8	4	645	483662922	483662310	0.000000e+00	837.0
31	TraesCS6D01G071000	chr5A	90.395	583	26	11	66	645	554351672	554351117	0.000000e+00	739.0
32	TraesCS6D01G071000	chr3D	86.246	618	33	20	32	645	579083252	579082683	8.950000e-175	623.0
33	TraesCS6D01G071000	chr1D	94.273	227	13	0	654	880	487202267	487202041	6.030000e-92	348.0
34	TraesCS6D01G071000	chr1D	86.219	283	36	3	1010	1291	37880025	37880305	1.320000e-78	303.0
35	TraesCS6D01G071000	chr1B	83.289	377	45	15	930	1291	57615099	57615472	6.080000e-87	331.0
36	TraesCS6D01G071000	chrUn	79.603	353	57	11	1008	1354	27965098	27964755	3.790000e-59	239.0
37	TraesCS6D01G071000	chrUn	78.830	359	55	14	1008	1354	112677043	112677392	3.820000e-54	222.0
38	TraesCS6D01G071000	chrUn	84.884	172	26	0	1029	1200	137812373	137812544	1.080000e-39	174.0
39	TraesCS6D01G071000	chr7D	83.784	74	10	2	817	890	600444500	600444571	5.260000e-08	69.4
40	TraesCS6D01G071000	chr3B	90.000	50	4	1	835	883	628757017	628756968	2.450000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G071000	chr6D	35884311	35887252	2941	True	5433.000000	5433	100.0000	1	2942	1	chr6D.!!$R4	2941
1	TraesCS6D01G071000	chr6D	465514554	465515434	880	False	1504.000000	1504	97.5030	1	880	1	chr6D.!!$F2	879
2	TraesCS6D01G071000	chr6B	75508406	75514726	6320	True	1027.666667	2163	88.3260	875	2942	3	chr6B.!!$R4	2067
3	TraesCS6D01G071000	chr6B	75421723	75423090	1367	True	728.000000	728	76.9940	1363	2739	1	chr6B.!!$R1	1376
4	TraesCS6D01G071000	chr6B	75267057	75268546	1489	True	566.500000	669	82.4555	916	2354	2	chr6B.!!$R3	1438
5	TraesCS6D01G071000	chr2D	37231696	37232579	883	True	1509.000000	1509	97.5140	1	883	1	chr2D.!!$R1	882
6	TraesCS6D01G071000	chr5D	421856890	421857773	883	False	1472.000000	1472	96.6290	1	890	1	chr5D.!!$F1	889
7	TraesCS6D01G071000	chr7B	624166209	624166828	619	True	874.000000	874	91.7960	1	645	1	chr7B.!!$R1	644
8	TraesCS6D01G071000	chr1A	22058297	22058918	621	True	870.000000	870	91.6540	1	645	1	chr1A.!!$R1	644
9	TraesCS6D01G071000	chr7A	502384046	502384669	623	False	869.000000	869	91.5250	2	647	1	chr7A.!!$F1	645
10	TraesCS6D01G071000	chr4B	531247430	531248050	620	False	865.000000	865	91.4860	1	645	1	chr4B.!!$F1	644
11	TraesCS6D01G071000	chr4B	74667074	74667690	616	True	839.000000	839	90.8530	1	645	1	chr4B.!!$R1	644
12	TraesCS6D01G071000	chr2A	580722517	580723136	619	True	857.000000	857	91.3180	1	645	1	chr2A.!!$R1	644
13	TraesCS6D01G071000	chr2A	589541211	589541830	619	True	852.000000	852	91.1760	1	645	1	chr2A.!!$R2	644
14	TraesCS6D01G071000	chr5B	327793954	327794571	617	True	839.000000	839	90.8670	1	645	1	chr5B.!!$R2	644
15	TraesCS6D01G071000	chr6A	479268942	479269559	617	True	837.000000	837	90.8240	3	645	1	chr6A.!!$R3	642
16	TraesCS6D01G071000	chr2B	483662310	483662922	612	True	837.000000	837	90.9660	4	645	1	chr2B.!!$R1	641
17	TraesCS6D01G071000	chr5A	554351117	554351672	555	True	739.000000	739	90.3950	66	645	1	chr5A.!!$R1	579
18	TraesCS6D01G071000	chr3D	579082683	579083252	569	True	623.000000	623	86.2460	32	645	1	chr3D.!!$R1	613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
978	1003	1.05666	TGACTCCACCACTTTCTCCC	58.943	55.0	0.0	0.0	0.0	4.3	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2830	7221	0.03467	AACAAGCCATCTCTGCCTCC	60.035	55.0	0.0	0.0	0.0	4.3	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
198	208	6.861065	TCAATCGTTTACAGAAAAGCTTCT	57.139	33.333	0.00	0.00	42.96	2.85
522	541	2.673368	GACTGACACGGGAAAATGCTAG	59.327	50.000	0.00	0.00	0.00	3.42
652	672	4.388499	GAGCGCGGGGACAAAGGA	62.388	66.667	8.83	0.00	0.00	3.36
883	903	3.512516	GCCTAGCGCTGCCCAAAG	61.513	66.667	22.90	8.05	0.00	2.77
895	915	4.129380	GCTGCCCAAAGAAAAATGAGTTT	58.871	39.130	0.00	0.00	0.00	2.66
905	925	5.988287	AGAAAAATGAGTTTTGGGCTTCAA	58.012	33.333	0.00	0.00	39.60	2.69
906	926	6.413892	AGAAAAATGAGTTTTGGGCTTCAAA	58.586	32.000	0.00	2.51	42.98	2.69
907	927	6.316140	AGAAAAATGAGTTTTGGGCTTCAAAC	59.684	34.615	0.00	2.19	44.20	2.93
908	928	5.357742	AAATGAGTTTTGGGCTTCAAACT	57.642	34.783	8.37	8.37	44.20	2.66
909	929	4.590850	ATGAGTTTTGGGCTTCAAACTC	57.409	40.909	20.38	20.38	44.20	3.01
910	930	3.360867	TGAGTTTTGGGCTTCAAACTCA	58.639	40.909	23.45	23.45	44.20	3.41
912	932	3.365472	AGTTTTGGGCTTCAAACTCACT	58.635	40.909	5.51	4.85	44.20	3.41
914	934	1.691196	TTGGGCTTCAAACTCACTGG	58.309	50.000	0.00	0.00	31.46	4.00
959	984	2.034687	ATCGTGGGCTGCTGCTTT	59.965	55.556	15.64	0.00	39.59	3.51
975	1000	2.092429	TGCTTTGACTCCACCACTTTCT	60.092	45.455	0.00	0.00	0.00	2.52
978	1003	1.056660	TGACTCCACCACTTTCTCCC	58.943	55.000	0.00	0.00	0.00	4.30
1016	1044	4.221422	GATGAGTAGCCGCCGCCA	62.221	66.667	0.00	0.00	34.57	5.69
1065	1099	0.612453	AGGACGACAACCTCCTCTCC	60.612	60.000	0.00	0.00	30.37	3.71
1080	1114	2.203365	TCCGAGATCCTCCTCCGC	60.203	66.667	0.00	0.00	0.00	5.54
1210	1244	0.970937	CAACCCTCCTCTGCTCGGTA	60.971	60.000	0.00	0.00	0.00	4.02
1212	1246	0.757188	ACCCTCCTCTGCTCGGTATG	60.757	60.000	0.00	0.00	0.00	2.39
1218	1252	1.534175	CCTCTGCTCGGTATGTTCGAC	60.534	57.143	0.00	0.00	32.86	4.20
1220	1254	0.098200	CTGCTCGGTATGTTCGACGA	59.902	55.000	0.00	0.00	32.86	4.20
1222	1256	2.856089	CTCGGTATGTTCGACGAGC	58.144	57.895	4.57	4.57	44.90	5.03
1223	1257	0.377554	CTCGGTATGTTCGACGAGCT	59.622	55.000	13.00	0.00	44.90	4.09
1224	1258	0.376152	TCGGTATGTTCGACGAGCTC	59.624	55.000	13.00	2.73	0.00	4.09
1226	1260	0.591741	GGTATGTTCGACGAGCTCCG	60.592	60.000	13.00	7.12	45.44	4.63
1232	5486	1.934220	TTCGACGAGCTCCGCTTCAT	61.934	55.000	8.47	0.00	39.88	2.57
1251	5505	3.115962	TCATACCTACAATGGATCCCCCT	60.116	47.826	9.90	0.00	35.38	4.79
1265	5519	2.803817	CCCCTAATCGTGTCCCGGG	61.804	68.421	16.85	16.85	37.11	5.73
1268	5522	1.324740	CCTAATCGTGTCCCGGGTGA	61.325	60.000	22.86	14.81	37.11	4.02
1359	5691	3.616560	GCCTCGTACTCATCTTCCACAAA	60.617	47.826	0.00	0.00	0.00	2.83
1475	5807	1.978580	CTTCCAGGTGGTCTTGGTAGT	59.021	52.381	0.00	0.00	40.96	2.73
1476	5808	3.170717	CTTCCAGGTGGTCTTGGTAGTA	58.829	50.000	0.00	0.00	40.96	1.82
1477	5809	2.816411	TCCAGGTGGTCTTGGTAGTAG	58.184	52.381	0.00	0.00	40.96	2.57
1482	5814	1.900486	GTGGTCTTGGTAGTAGGCACT	59.100	52.381	0.00	0.00	46.37	4.40
1533	5865	2.090524	CGCCCGTGTTTACTCGTCC	61.091	63.158	4.02	0.00	0.00	4.79
1611	5949	4.651778	TGGGTGAACTTCCTAACAAGATG	58.348	43.478	0.00	0.00	0.00	2.90
1621	5959	7.680730	ACTTCCTAACAAGATGAACATGTACT	58.319	34.615	0.00	0.00	30.00	2.73
1690	6028	1.221414	GCACATATCGGCAGGAACTC	58.779	55.000	0.00	0.00	34.60	3.01
1691	6029	1.202580	GCACATATCGGCAGGAACTCT	60.203	52.381	0.00	0.00	34.60	3.24
1825	6163	0.485099	TGGTGGTGGCCTTGGTATTT	59.515	50.000	3.32	0.00	0.00	1.40
1864	6202	2.433970	AGAGCTCAGTTATGGAAGAGGC	59.566	50.000	17.77	0.00	0.00	4.70
1894	6232	0.889994	TGATGGTGTTGCTTCATGGC	59.110	50.000	0.00	0.00	0.00	4.40
1923	6261	7.110155	TGGGAAGAACTATTGAACTGGATAAC	58.890	38.462	0.00	0.00	0.00	1.89
1940	6278	8.778059	ACTGGATAACCTACTTTCCATGAATTA	58.222	33.333	0.00	0.00	37.61	1.40
1990	6334	5.186996	ACAAGGTTTTGCTGAGTACAATG	57.813	39.130	0.00	0.00	37.85	2.82
2052	6396	1.263484	CAGCTTGAGTCACTGCAGTTG	59.737	52.381	18.94	13.06	0.00	3.16
2070	6414	4.402474	CAGTTGAAGGAAGTTCCCAAAAGT	59.598	41.667	18.65	9.90	37.19	2.66
2098	6442	9.935241	GCATCTTGACTCTCTATTATCCATTTA	57.065	33.333	0.00	0.00	0.00	1.40
2203	6551	0.872388	GCCGTTCACATCCTTTCGTT	59.128	50.000	0.00	0.00	0.00	3.85
2214	6562	7.932335	TCACATCCTTTCGTTTTAAGCTAAAA	58.068	30.769	0.00	0.00	35.45	1.52
2236	6593	6.664428	AACAAAGTGGTGCCATATAAGTTT	57.336	33.333	0.00	0.00	0.00	2.66
2237	6594	6.267496	ACAAAGTGGTGCCATATAAGTTTC	57.733	37.500	0.00	0.00	0.00	2.78
2270	6628	6.143118	GCTACGTGATGATCTTCTCAACATAC	59.857	42.308	9.75	0.00	38.70	2.39
2281	6645	6.045318	TCTTCTCAACATACAGCATTCTAGC	58.955	40.000	0.00	0.00	0.00	3.42
2390	6758	0.175760	TGTAGCGAGGTGATTCTGCC	59.824	55.000	0.00	0.00	0.00	4.85
2391	6759	0.461961	GTAGCGAGGTGATTCTGCCT	59.538	55.000	0.00	0.97	37.91	4.75
2416	6786	3.064931	CACGGTCTTGTTCCCTTAGTTC	58.935	50.000	0.00	0.00	0.00	3.01
2422	6792	5.623956	TCTTGTTCCCTTAGTTCAAGACA	57.376	39.130	0.00	0.00	39.27	3.41
2424	6794	3.740115	TGTTCCCTTAGTTCAAGACAGC	58.260	45.455	0.00	0.00	36.22	4.40
2426	6796	2.244695	TCCCTTAGTTCAAGACAGCGA	58.755	47.619	0.00	0.00	36.22	4.93
2468	6838	8.449251	AAAGGCAAAAGAAAATTTAGCAATCA	57.551	26.923	0.00	0.00	0.00	2.57
2633	7021	4.955450	TGTTGGCTGTCTATTGGCATATTT	59.045	37.500	0.00	0.00	38.51	1.40
2707	7097	3.014623	TCAAGATGAGATACACGTCGGT	58.985	45.455	0.00	0.00	0.00	4.69
2723	7113	3.363970	CGTCGGTTGGAAATTGAAGACAG	60.364	47.826	0.00	0.00	0.00	3.51
2861	7252	1.285950	GCTTGTTGGGCGTTCTTCC	59.714	57.895	0.00	0.00	0.00	3.46
2865	7256	1.161563	TGTTGGGCGTTCTTCCGTTC	61.162	55.000	0.00	0.00	0.00	3.95

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
198	208	3.579586	TGAAGCTTTTTCCCTCTACGGTA	59.420	43.478	0.00	0.00	0.00	4.02
318	331	1.080093	GTCGCCGATCACACCTCAA	60.080	57.895	0.00	0.00	0.00	3.02
522	541	1.188863	AAAACAGAGATGCCCCATGC	58.811	50.000	0.00	0.00	41.77	4.06
789	809	2.354773	CGCGGCCGTTAGATCTCC	60.355	66.667	28.70	5.16	0.00	3.71
809	829	1.437573	GATCCGTCCGATCTGTGCA	59.562	57.895	0.00	0.00	43.65	4.57
883	903	6.316140	AGTTTGAAGCCCAAAACTCATTTTTC	59.684	34.615	3.78	0.00	45.40	2.29
895	915	1.691196	CCAGTGAGTTTGAAGCCCAA	58.309	50.000	0.00	0.00	0.00	4.12
905	925	1.963338	GAAGCGCTGCCAGTGAGTT	60.963	57.895	12.58	0.96	0.00	3.01
906	926	2.358003	GAAGCGCTGCCAGTGAGT	60.358	61.111	12.58	0.00	0.00	3.41
907	927	2.047465	AGAAGCGCTGCCAGTGAG	60.047	61.111	12.58	0.00	0.00	3.51
908	928	2.047844	GAGAAGCGCTGCCAGTGA	60.048	61.111	12.58	0.00	0.00	3.41
909	929	1.633852	GAAGAGAAGCGCTGCCAGTG	61.634	60.000	12.58	0.00	0.00	3.66
910	930	1.375268	GAAGAGAAGCGCTGCCAGT	60.375	57.895	12.58	0.00	0.00	4.00
912	932	1.375140	CTGAAGAGAAGCGCTGCCA	60.375	57.895	12.58	0.23	0.00	4.92
914	934	0.948141	ACACTGAAGAGAAGCGCTGC	60.948	55.000	12.58	9.98	0.00	5.25
959	984	1.056660	GGGAGAAAGTGGTGGAGTCA	58.943	55.000	0.00	0.00	0.00	3.41
975	1000	1.607801	CCTCGTCACAGCTCATGGGA	61.608	60.000	0.00	0.00	39.74	4.37
978	1003	1.812922	GCCCTCGTCACAGCTCATG	60.813	63.158	0.00	0.00	0.00	3.07
1065	1099	2.203422	AGGCGGAGGAGGATCTCG	60.203	66.667	0.00	0.00	34.74	4.04
1203	1237	2.856089	CTCGTCGAACATACCGAGC	58.144	57.895	7.77	0.00	40.12	5.03
1222	1256	3.069586	TCCATTGTAGGTATGAAGCGGAG	59.930	47.826	0.00	0.00	0.00	4.63
1223	1257	3.035363	TCCATTGTAGGTATGAAGCGGA	58.965	45.455	0.00	0.00	0.00	5.54
1224	1258	3.469008	TCCATTGTAGGTATGAAGCGG	57.531	47.619	0.00	0.00	0.00	5.52
1226	1260	4.327680	GGGATCCATTGTAGGTATGAAGC	58.672	47.826	15.23	0.00	0.00	3.86
1232	5486	4.579850	TTAGGGGGATCCATTGTAGGTA	57.420	45.455	15.23	0.00	38.24	3.08
1265	5519	3.692406	ACGAGGGGAAGCGGTCAC	61.692	66.667	0.00	0.00	0.00	3.67
1310	5564	1.479389	GGCATCCCAAGGGTATGAAGG	60.479	57.143	16.71	0.00	36.47	3.46
1448	5780	0.537371	GACCACCTGGAAGTGTTGGG	60.537	60.000	0.00	0.00	38.94	4.12
1475	5807	2.089980	GTTCGTCTACCTCAGTGCCTA	58.910	52.381	0.00	0.00	0.00	3.93
1476	5808	0.889306	GTTCGTCTACCTCAGTGCCT	59.111	55.000	0.00	0.00	0.00	4.75
1477	5809	0.601558	TGTTCGTCTACCTCAGTGCC	59.398	55.000	0.00	0.00	0.00	5.01
1482	5814	3.119065	TGTGTTGTTGTTCGTCTACCTCA	60.119	43.478	0.00	0.00	0.00	3.86
1533	5865	4.227134	CCCCATCCGCCAGTCTCG	62.227	72.222	0.00	0.00	0.00	4.04
1569	5901	2.425143	TAGAAGCTTTGGATGGCAGG	57.575	50.000	0.00	0.00	0.00	4.85
1621	5959	8.746530	CCCAACTAGAACACTGATAGTAAAGTA	58.253	37.037	0.00	0.00	0.00	2.24
1739	6077	0.465705	CACTGGCACCGGTATCAGAT	59.534	55.000	30.89	18.17	33.65	2.90
1741	6079	1.153369	CCACTGGCACCGGTATCAG	60.153	63.158	25.66	25.66	33.65	2.90
1825	6163	7.999679	TGAGCTCTGAATTTTGAAAGAAAGAA	58.000	30.769	16.19	0.00	0.00	2.52
1845	6183	2.170187	CTGCCTCTTCCATAACTGAGCT	59.830	50.000	0.00	0.00	0.00	4.09
1894	6232	4.394300	CAGTTCAATAGTTCTTCCCAGCAG	59.606	45.833	0.00	0.00	0.00	4.24
1940	6278	9.268282	TCATTACAGTCCCTCTATACTTCTTTT	57.732	33.333	0.00	0.00	0.00	2.27
1957	6295	6.714810	TCAGCAAAACCTTGTATCATTACAGT	59.285	34.615	0.00	0.00	39.43	3.55
2052	6396	2.031069	GCGACTTTTGGGAACTTCCTTC	60.031	50.000	7.77	0.00	36.57	3.46
2070	6414	5.770162	TGGATAATAGAGAGTCAAGATGCGA	59.230	40.000	0.00	0.00	0.00	5.10
2098	6442	3.146104	ACCTGCAGCATAGACACTTTT	57.854	42.857	8.66	0.00	0.00	2.27
2159	6507	8.655970	GCATCCAATCAACCAATTAAAAGTAAC	58.344	33.333	0.00	0.00	0.00	2.50
2203	6551	5.105310	TGGCACCACTTTGTTTTAGCTTAAA	60.105	36.000	0.00	0.00	0.00	1.52
2214	6562	6.010219	AGAAACTTATATGGCACCACTTTGT	58.990	36.000	0.00	0.00	0.00	2.83
2250	6608	5.814188	TGCTGTATGTTGAGAAGATCATCAC	59.186	40.000	0.10	0.00	39.77	3.06
2270	6628	2.593346	AAGAGGACGCTAGAATGCTG	57.407	50.000	0.00	0.00	0.00	4.41
2281	6645	3.310774	CACAAGCATCCATAAAGAGGACG	59.689	47.826	0.00	0.00	38.13	4.79
2390	6758	3.611766	AGGGAACAAGACCGTGATAAG	57.388	47.619	0.00	0.00	0.00	1.73
2391	6759	4.529377	ACTAAGGGAACAAGACCGTGATAA	59.471	41.667	0.00	0.00	0.00	1.75
2424	6794	1.298157	TTGACAAAGGAGGCGCATCG	61.298	55.000	16.72	4.46	0.00	3.84
2426	6796	1.270550	CTTTTGACAAAGGAGGCGCAT	59.729	47.619	10.83	0.00	36.48	4.73
2468	6838	3.929094	ACGAGAATTGCAAAAATGGCAT	58.071	36.364	1.71	0.00	41.58	4.40
2471	6841	5.942872	AGAGTACGAGAATTGCAAAAATGG	58.057	37.500	1.71	0.00	0.00	3.16
2594	6974	5.583061	CAGCCAACACGGTTCAGTTATTATA	59.417	40.000	0.00	0.00	36.97	0.98
2609	6989	1.533625	TGCCAATAGACAGCCAACAC	58.466	50.000	0.00	0.00	0.00	3.32
2664	7054	1.446907	AGCATCAACACTGCAGCTAC	58.553	50.000	15.27	0.00	42.15	3.58
2707	7097	6.003326	TCATGTAGCTGTCTTCAATTTCCAA	58.997	36.000	0.00	0.00	0.00	3.53
2830	7221	0.034670	AACAAGCCATCTCTGCCTCC	60.035	55.000	0.00	0.00	0.00	4.30
2865	7256	1.399440	CATTTCATCTCAGCCACACGG	59.601	52.381	0.00	0.00	0.00	4.94

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.