Multiple sequence alignment - TraesCS6D01G070200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G070200 chr6D 100.000 3548 0 0 1 3548 35486768 35490315 0.000000e+00 6553
1 TraesCS6D01G070200 chr6D 80.455 220 40 3 41 259 431324303 431324086 7.880000e-37 165
2 TraesCS6D01G070200 chr6A 94.212 3473 171 14 3 3452 39437415 39440880 0.000000e+00 5273
3 TraesCS6D01G070200 chr6A 90.291 103 5 3 3450 3548 39440953 39441054 2.870000e-26 130
4 TraesCS6D01G070200 chr6B 89.134 2089 177 29 918 2968 73159440 73161516 0.000000e+00 2555
5 TraesCS6D01G070200 chr6B 92.402 487 28 9 3 486 73158106 73158586 0.000000e+00 686
6 TraesCS6D01G070200 chr6B 90.615 309 18 3 512 819 73158584 73158882 1.980000e-107 399
7 TraesCS6D01G070200 chr6B 94.340 106 5 1 818 923 73159168 73159272 1.020000e-35 161
8 TraesCS6D01G070200 chr7D 85.957 235 32 1 24 258 150733911 150733678 2.110000e-62 250
9 TraesCS6D01G070200 chr5B 83.830 235 37 1 18 252 115324796 115325029 4.610000e-54 222
10 TraesCS6D01G070200 chr5B 83.475 236 37 2 24 258 51057608 51057374 5.960000e-53 219
11 TraesCS6D01G070200 chr7A 81.702 235 42 1 24 258 103196530 103196297 1.000000e-45 195
12 TraesCS6D01G070200 chr2A 80.237 253 48 2 7 258 433376399 433376650 4.680000e-44 189
13 TraesCS6D01G070200 chr5A 81.116 233 41 3 24 255 45254304 45254534 2.180000e-42 183
14 TraesCS6D01G070200 chr7B 90.244 82 8 0 266 347 493366038 493365957 1.350000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G070200 chr6D 35486768 35490315 3547 False 6553.00 6553 100.00000 1 3548 1 chr6D.!!$F1 3547
1 TraesCS6D01G070200 chr6A 39437415 39441054 3639 False 2701.50 5273 92.25150 3 3548 2 chr6A.!!$F1 3545
2 TraesCS6D01G070200 chr6B 73158106 73161516 3410 False 950.25 2555 91.62275 3 2968 4 chr6B.!!$F1 2965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 468 1.379642 GGTTGGATGCACTGGCTAGC 61.380 60.0 6.04 6.04 41.91 3.42 F
1773 2244 0.929244 AATGCTATGGGAAGGCAGGT 59.071 50.0 0.00 0.00 39.38 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 2588 0.893270 TGACCAAACCATCGCCTTGG 60.893 55.0 0.0 0.0 44.35 3.61 R
3262 3767 0.773644 AGCCATGGACACCTTCAACT 59.226 50.0 18.4 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.987953 TGAGTTCATCCGAAGATTCATCATC 59.012 40.000 0.00 0.00 0.00 2.92
51 52 3.502211 GTCGATGAGGATTTTGTGGTTGT 59.498 43.478 0.00 0.00 0.00 3.32
58 59 6.068010 TGAGGATTTTGTGGTTGTGACTATT 58.932 36.000 0.00 0.00 0.00 1.73
59 60 6.206634 TGAGGATTTTGTGGTTGTGACTATTC 59.793 38.462 0.00 0.00 0.00 1.75
166 167 3.895656 AGAGCGGCCATTACATACTCTTA 59.104 43.478 2.24 0.00 28.93 2.10
175 176 7.042335 GCCATTACATACTCTTAGCCGATTAT 58.958 38.462 0.00 0.00 0.00 1.28
227 228 2.050805 TTTTTCGGCGCCGCTTTC 60.051 55.556 42.78 6.47 39.59 2.62
439 442 2.860293 CCACGCGAACGAAATGCT 59.140 55.556 15.93 0.00 43.93 3.79
465 468 1.379642 GGTTGGATGCACTGGCTAGC 61.380 60.000 6.04 6.04 41.91 3.42
482 485 2.566010 CAAAATGTGGACGGGGCG 59.434 61.111 0.00 0.00 0.00 6.13
485 488 3.912745 AAATGTGGACGGGGCGGAC 62.913 63.158 0.00 0.00 0.00 4.79
501 505 4.430765 ACGCCGCCCTTACTGTCG 62.431 66.667 0.00 0.00 0.00 4.35
522 526 3.121696 CGATTCAAACAGACAAAAAGCGC 60.122 43.478 0.00 0.00 0.00 5.92
551 555 2.862776 CGTTCGTTTGTGTCGGCGT 61.863 57.895 6.85 0.00 0.00 5.68
579 583 2.194201 TGCCCTTACTTTAGTGTGCC 57.806 50.000 0.00 0.00 0.00 5.01
585 589 4.825085 CCCTTACTTTAGTGTGCCTTTTGA 59.175 41.667 0.00 0.00 0.00 2.69
587 591 6.015434 CCCTTACTTTAGTGTGCCTTTTGATT 60.015 38.462 0.00 0.00 0.00 2.57
778 783 9.822185 ATAAAATCCTCATTGCTCCAATAAAAC 57.178 29.630 0.00 0.00 32.35 2.43
792 797 7.475137 TCCAATAAAACTGGAACCATTAAGG 57.525 36.000 0.00 0.00 40.08 2.69
929 1221 3.239449 TCTCCTTTTGAGCACTCTGGTA 58.761 45.455 0.00 0.00 41.18 3.25
1322 1793 1.690985 CCAACCCCTCTCCCTCTCC 60.691 68.421 0.00 0.00 0.00 3.71
1333 1804 2.043450 CCTCTCCCTGACCTCGCT 60.043 66.667 0.00 0.00 0.00 4.93
1773 2244 0.929244 AATGCTATGGGAAGGCAGGT 59.071 50.000 0.00 0.00 39.38 4.00
1926 2397 3.058293 TGAAGAAGATGCGAAAATTGCGT 60.058 39.130 0.00 0.00 34.24 5.24
1930 2401 1.535028 AGATGCGAAAATTGCGTGTCA 59.465 42.857 0.00 0.00 34.24 3.58
1946 2417 1.890041 TCACGCCAACCACGAAAGG 60.890 57.895 0.00 0.00 0.00 3.11
1947 2418 2.184167 CACGCCAACCACGAAAGGT 61.184 57.895 0.00 0.00 45.91 3.50
2058 2529 1.627329 AGGAAGCTCAAGTCTGCATCA 59.373 47.619 0.00 0.00 0.00 3.07
2329 2800 0.250467 GGCACAAGAGGTTCTGAGCA 60.250 55.000 0.00 0.00 0.00 4.26
2333 2804 1.346068 ACAAGAGGTTCTGAGCAGGAC 59.654 52.381 0.08 0.08 36.18 3.85
2403 2874 0.687354 AGCGAGACAGGGTGAAACAT 59.313 50.000 0.00 0.00 39.98 2.71
2458 2929 0.532573 GGAGAGCACGGATCAGTCAA 59.467 55.000 0.00 0.00 0.00 3.18
2483 2954 5.347635 CCAATTCAAGTGATCAGCAACAATG 59.652 40.000 0.00 0.00 0.00 2.82
2595 3066 4.020128 AGGAGGTTCCGAATAGGCATAATC 60.020 45.833 0.00 0.00 42.75 1.75
2607 3078 7.493971 CGAATAGGCATAATCTCTTCCTTATGG 59.506 40.741 0.00 0.00 36.36 2.74
2718 3198 1.103803 TAACTAGGCCTCTGACTGCG 58.896 55.000 9.68 0.00 0.00 5.18
2765 3245 3.215151 GGCAGCTCCCTTAAGGTAATTC 58.785 50.000 20.22 4.82 36.75 2.17
2766 3246 3.215151 GCAGCTCCCTTAAGGTAATTCC 58.785 50.000 20.22 1.16 36.75 3.01
2811 3306 7.124347 TCAACTTGTAGCTTATGTTTAACCG 57.876 36.000 0.00 0.00 0.00 4.44
2905 3400 6.431234 CCTAATAACCTCAGCTGTGTTTTTCT 59.569 38.462 22.80 11.75 0.00 2.52
2915 3410 3.503748 GCTGTGTTTTTCTAGTCCTGCAT 59.496 43.478 0.00 0.00 0.00 3.96
2936 3431 6.870439 TGCATAAGAACATCTATTGGATCTCG 59.130 38.462 0.00 0.00 31.27 4.04
2968 3463 3.223435 TCCTAGTACTGACATAGCTGCC 58.777 50.000 5.39 0.00 0.00 4.85
2982 3477 0.680921 GCTGCCTGCATCTTACCCAA 60.681 55.000 0.00 0.00 42.31 4.12
2984 3479 2.170166 CTGCCTGCATCTTACCCAAAA 58.830 47.619 0.00 0.00 0.00 2.44
3023 3518 7.556733 ACTATTGTTTCTTGAACCGTAACAA 57.443 32.000 0.00 0.00 41.32 2.83
3064 3559 9.771534 ATAACTGCTTATTATCTTCTTGGAGTC 57.228 33.333 0.00 0.00 0.00 3.36
3086 3581 0.107643 GCCAGTGCCTCTATTCCTCC 59.892 60.000 0.00 0.00 0.00 4.30
3158 3653 7.039882 CGTGTTAGGTTTACTGTTGGAGATAT 58.960 38.462 0.00 0.00 0.00 1.63
3186 3691 8.865001 GTTACATGTGCTTTTGTTTACTTTTGA 58.135 29.630 9.11 0.00 0.00 2.69
3194 3699 9.928236 TGCTTTTGTTTACTTTTGAATATTTGC 57.072 25.926 0.00 0.00 0.00 3.68
3211 3716 9.343539 GAATATTTGCTGAGGTAGGTCTAATTT 57.656 33.333 0.00 0.00 0.00 1.82
3212 3717 8.682936 ATATTTGCTGAGGTAGGTCTAATTTG 57.317 34.615 0.00 0.00 0.00 2.32
3262 3767 5.034152 CAGCAGCGAACTGTTTCTTTTAAA 58.966 37.500 0.00 0.00 46.30 1.52
3276 3781 7.039644 TGTTTCTTTTAAAGTTGAAGGTGTCCA 60.040 33.333 4.53 0.00 0.00 4.02
3289 3794 2.311070 TGTCCATGGCTCCCTGCAT 61.311 57.895 6.96 0.00 45.15 3.96
3300 3805 1.948145 CTCCCTGCATTGAGATTCAGC 59.052 52.381 6.76 0.00 0.00 4.26
3330 3835 2.893489 TGTCCTGGGATGATACGATCAG 59.107 50.000 0.00 0.00 43.53 2.90
3368 3873 1.734465 CAGGTAACACTTAGCAGCTGC 59.266 52.381 31.53 31.53 39.92 5.25
3373 3878 3.565905 AACACTTAGCAGCTGCATTTC 57.434 42.857 38.24 10.93 45.16 2.17
3376 3881 3.190118 ACACTTAGCAGCTGCATTTCTTC 59.810 43.478 38.24 8.57 45.16 2.87
3377 3882 3.189910 CACTTAGCAGCTGCATTTCTTCA 59.810 43.478 38.24 9.19 45.16 3.02
3378 3883 3.439476 ACTTAGCAGCTGCATTTCTTCAG 59.561 43.478 38.24 19.95 45.16 3.02
3379 3884 1.906990 AGCAGCTGCATTTCTTCAGT 58.093 45.000 38.24 12.75 45.16 3.41
3380 3885 2.236766 AGCAGCTGCATTTCTTCAGTT 58.763 42.857 38.24 12.19 45.16 3.16
3382 3887 4.015084 AGCAGCTGCATTTCTTCAGTTAT 58.985 39.130 38.24 11.50 45.16 1.89
3388 3899 8.404000 CAGCTGCATTTCTTCAGTTATTTATCT 58.596 33.333 0.00 0.00 33.09 1.98
3431 3942 5.216566 TCTGTTGAAACTTGAAACTGTCG 57.783 39.130 0.00 0.00 0.00 4.35
3434 3945 4.095610 GTTGAAACTTGAAACTGTCGGTG 58.904 43.478 0.00 0.00 0.00 4.94
3452 3963 4.647853 TCGGTGTCTGCATACTTAAGGTAT 59.352 41.667 7.53 0.07 41.38 2.73
3489 4078 4.918810 AAGTGCACCTTTTCTCGAAATT 57.081 36.364 14.63 0.00 0.00 1.82
3532 4121 0.035152 TGCTATGCAGTTGTGGGGAG 60.035 55.000 0.00 0.00 33.32 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.148606 GATGATGAATCTTCGGATGAACTCATC 60.149 40.741 24.41 24.41 40.75 2.92
5 6 4.987285 CGATGATGAATCTTCGGATGAACT 59.013 41.667 16.62 0.00 45.23 3.01
27 28 1.665679 CCACAAAATCCTCATCGACCG 59.334 52.381 0.00 0.00 0.00 4.79
58 59 1.605457 GCAATGTGGTCACTGACGAGA 60.605 52.381 3.04 0.00 32.65 4.04
59 60 0.792640 GCAATGTGGTCACTGACGAG 59.207 55.000 3.04 0.00 32.65 4.18
91 92 0.837940 GGATCGAGCCCCTAAACCTT 59.162 55.000 9.02 0.00 0.00 3.50
141 142 2.700897 AGTATGTAATGGCCGCTCTCTT 59.299 45.455 0.00 0.00 0.00 2.85
166 167 2.095853 CGTGCACTGAAAATAATCGGCT 59.904 45.455 16.19 0.00 0.00 5.52
175 176 1.098712 GTGGGGACGTGCACTGAAAA 61.099 55.000 16.19 0.00 0.00 2.29
227 228 1.451927 CACATGTCCCACCATCCGG 60.452 63.158 0.00 0.00 38.77 5.14
237 238 9.628746 AAAATAAATACGGTTAAACACATGTCC 57.371 29.630 0.00 0.00 0.00 4.02
405 408 1.672356 GGCCGGTATGCAGCCATAG 60.672 63.158 8.94 0.00 46.34 2.23
427 430 0.519175 CGGCTGAAGCATTTCGTTCG 60.519 55.000 4.43 0.00 44.36 3.95
439 442 1.971167 GTGCATCCAACCGGCTGAA 60.971 57.895 6.38 0.00 29.21 3.02
465 468 2.566010 CGCCCCGTCCACATTTTG 59.434 61.111 0.00 0.00 0.00 2.44
482 485 4.078516 ACAGTAAGGGCGGCGTCC 62.079 66.667 25.64 25.64 0.00 4.79
485 488 2.901051 AATCGACAGTAAGGGCGGCG 62.901 60.000 0.51 0.51 0.00 6.46
486 489 1.152383 GAATCGACAGTAAGGGCGGC 61.152 60.000 0.00 0.00 0.00 6.53
487 490 0.174845 TGAATCGACAGTAAGGGCGG 59.825 55.000 0.00 0.00 0.00 6.13
488 491 2.004583 TTGAATCGACAGTAAGGGCG 57.995 50.000 0.00 0.00 0.00 6.13
493 497 6.912203 TTTGTCTGTTTGAATCGACAGTAA 57.088 33.333 13.65 9.25 42.90 2.24
501 505 3.796178 TGCGCTTTTTGTCTGTTTGAATC 59.204 39.130 9.73 0.00 0.00 2.52
522 526 1.904412 CAAACGAACGCGGATTTGATG 59.096 47.619 12.47 2.39 43.17 3.07
551 555 2.922740 AAGTAAGGGCAACTCGAACA 57.077 45.000 0.00 0.00 0.00 3.18
579 583 7.672983 TTAGTACCTTGAGAGCAATCAAAAG 57.327 36.000 5.30 3.14 38.66 2.27
778 783 5.041191 AGATGTAGCCTTAATGGTTCCAG 57.959 43.478 0.00 0.00 38.35 3.86
792 797 7.639945 AGTTTGTTTTCAGTTGTAGATGTAGC 58.360 34.615 0.00 0.00 0.00 3.58
891 1183 9.799106 CAAAAGGAGATAATGTAACAGGGATAT 57.201 33.333 0.00 0.00 0.00 1.63
929 1221 8.405418 TGAACGTACCTTATCTATCTGCTTAT 57.595 34.615 0.00 0.00 0.00 1.73
1134 1601 1.954362 GCTCCAGCTCCGACATGAGT 61.954 60.000 0.00 0.00 38.21 3.41
1194 1661 0.039256 CCGACTTGGTTCCGACGTAA 60.039 55.000 0.00 0.00 0.00 3.18
1333 1804 3.316283 GCAAACATTCAGAATTTCGCCA 58.684 40.909 0.00 0.00 0.00 5.69
1700 2171 1.195115 GTACCCCAGAGACAGCATCA 58.805 55.000 0.00 0.00 0.00 3.07
1725 2196 0.999406 ATCCGAACTGAAACGCATCG 59.001 50.000 0.00 0.00 0.00 3.84
1773 2244 2.172082 CCTCTCCATCTCAGCCAATTGA 59.828 50.000 7.12 0.00 0.00 2.57
1839 2310 2.031919 AGGACAATGTTCGCCGCA 59.968 55.556 0.00 0.00 0.00 5.69
1926 2397 1.433053 CTTTCGTGGTTGGCGTGACA 61.433 55.000 0.00 0.00 0.00 3.58
1930 2401 2.191109 ACCTTTCGTGGTTGGCGT 59.809 55.556 0.00 0.00 36.89 5.68
1946 2417 6.032460 GCATGAGTTAAGCACGAAATTGTAAC 59.968 38.462 0.00 0.00 0.00 2.50
1947 2418 6.083630 GCATGAGTTAAGCACGAAATTGTAA 58.916 36.000 0.00 0.00 0.00 2.41
1962 2433 1.216977 CACCGTCGGGCATGAGTTA 59.783 57.895 17.28 0.00 36.48 2.24
2117 2588 0.893270 TGACCAAACCATCGCCTTGG 60.893 55.000 0.00 0.00 44.35 3.61
2215 2686 2.159627 GCAATGTACGGTCCACTTTCAG 59.840 50.000 0.00 0.00 0.00 3.02
2222 2693 1.458398 CAATGGCAATGTACGGTCCA 58.542 50.000 0.00 0.00 0.00 4.02
2229 2700 3.758023 CAGACACTTCCAATGGCAATGTA 59.242 43.478 1.30 0.00 0.00 2.29
2458 2929 3.890756 TGTTGCTGATCACTTGAATTGGT 59.109 39.130 0.00 0.00 0.00 3.67
2483 2954 7.306574 CGAGTTTTCTTAAAAGATTGGGCAAAC 60.307 37.037 7.09 7.09 34.49 2.93
2595 3066 6.723298 ATCAGTCTACACCATAAGGAAGAG 57.277 41.667 0.00 0.00 38.69 2.85
2607 3078 5.105310 ACACCCATCTTGTATCAGTCTACAC 60.105 44.000 0.00 0.00 31.51 2.90
2654 3134 5.997746 AGTTCACCATTCGAAAAGAGATGAA 59.002 36.000 0.00 4.43 0.00 2.57
2667 3147 5.354513 GCTTTAAGACCCTAGTTCACCATTC 59.645 44.000 0.00 0.00 0.00 2.67
2718 3198 4.036616 GGACTCGAGGGACAAGTCTAATAC 59.963 50.000 18.41 0.00 39.47 1.89
2765 3245 0.896940 AAATGTCAGCAGGGCAGTGG 60.897 55.000 0.00 0.00 0.00 4.00
2766 3246 0.963962 AAAATGTCAGCAGGGCAGTG 59.036 50.000 0.00 0.00 0.00 3.66
2788 3268 5.793457 GCGGTTAAACATAAGCTACAAGTTG 59.207 40.000 0.00 0.00 0.00 3.16
2800 3295 4.457603 ACATCAAAGCAGCGGTTAAACATA 59.542 37.500 0.00 0.00 0.00 2.29
2809 3304 1.870055 AAGGCACATCAAAGCAGCGG 61.870 55.000 0.00 0.00 0.00 5.52
2811 3306 1.815003 AGTAAGGCACATCAAAGCAGC 59.185 47.619 0.00 0.00 0.00 5.25
2884 3379 6.534634 ACTAGAAAAACACAGCTGAGGTTAT 58.465 36.000 23.35 15.38 0.00 1.89
2905 3400 7.290014 TCCAATAGATGTTCTTATGCAGGACTA 59.710 37.037 0.00 0.00 31.03 2.59
2915 3410 5.839063 ACCCGAGATCCAATAGATGTTCTTA 59.161 40.000 0.00 0.00 34.42 2.10
2936 3431 3.895656 TCAGTACTAGGATGCACATACCC 59.104 47.826 0.00 0.00 0.00 3.69
2968 3463 6.618287 TCGATTATTTTGGGTAAGATGCAG 57.382 37.500 0.00 0.00 0.00 4.41
2984 3479 9.988815 AGAAACAATAGTATCAGCTTCGATTAT 57.011 29.630 0.00 0.00 0.00 1.28
3038 3533 9.771534 GACTCCAAGAAGATAATAAGCAGTTAT 57.228 33.333 0.00 0.00 0.00 1.89
3064 3559 1.211457 AGGAATAGAGGCACTGGCTTG 59.789 52.381 6.56 0.00 41.55 4.01
3070 3565 2.683768 ATTCGGAGGAATAGAGGCACT 58.316 47.619 0.00 0.00 41.18 4.40
3086 3581 6.766084 TGGCTAAACAAACAAAACAAATTCG 58.234 32.000 0.00 0.00 0.00 3.34
3158 3653 8.764524 AAAGTAAACAAAAGCACATGTAACAA 57.235 26.923 0.00 0.00 0.00 2.83
3186 3691 9.125026 CAAATTAGACCTACCTCAGCAAATATT 57.875 33.333 0.00 0.00 0.00 1.28
3194 3699 5.794894 ACACACAAATTAGACCTACCTCAG 58.205 41.667 0.00 0.00 0.00 3.35
3211 3716 6.940831 TCAAGAAAAATCATCTGACACACA 57.059 33.333 0.00 0.00 0.00 3.72
3212 3717 7.420800 ACTTCAAGAAAAATCATCTGACACAC 58.579 34.615 0.00 0.00 0.00 3.82
3262 3767 0.773644 AGCCATGGACACCTTCAACT 59.226 50.000 18.40 0.00 0.00 3.16
3276 3781 0.851469 ATCTCAATGCAGGGAGCCAT 59.149 50.000 11.51 0.52 44.83 4.40
3289 3794 1.347707 ACTTCCCACGCTGAATCTCAA 59.652 47.619 0.00 0.00 0.00 3.02
3300 3805 1.553690 ATCCCAGGACACTTCCCACG 61.554 60.000 0.00 0.00 44.10 4.94
3330 3835 9.005777 TGTTACCTGGTTGATTTTGTAAGATAC 57.994 33.333 3.84 0.00 0.00 2.24
3345 3850 2.372172 AGCTGCTAAGTGTTACCTGGTT 59.628 45.455 3.84 0.00 0.00 3.67
3346 3851 1.978580 AGCTGCTAAGTGTTACCTGGT 59.021 47.619 4.05 4.05 0.00 4.00
3393 3904 9.670180 GTTTCAACAGAAAATTCTTAAAACACG 57.330 29.630 0.00 0.00 34.74 4.49
3452 3963 3.316588 TGCACTTATTTCCAGCGAAAACA 59.683 39.130 0.00 0.00 41.25 2.83
3453 3964 3.668656 GTGCACTTATTTCCAGCGAAAAC 59.331 43.478 10.32 0.00 41.25 2.43
3458 4044 1.453155 AGGTGCACTTATTTCCAGCG 58.547 50.000 17.98 0.00 0.00 5.18
3460 4046 5.617751 CGAGAAAAGGTGCACTTATTTCCAG 60.618 44.000 25.04 19.27 38.85 3.86
3489 4078 4.855298 ATGCCCCTTTTAGCACTACTAA 57.145 40.909 0.00 0.00 42.84 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.