Multiple sequence alignment - TraesCS6D01G069700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G069700 chr6D 100.000 4462 0 0 1 4462 34974254 34978715 0.000000e+00 8240.0
1 TraesCS6D01G069700 chr6B 93.427 1704 80 21 2745 4437 72184965 72186647 0.000000e+00 2497.0
2 TraesCS6D01G069700 chr6B 92.093 1037 55 12 1722 2746 72183786 72184807 0.000000e+00 1435.0
3 TraesCS6D01G069700 chr6B 89.301 458 36 9 793 1248 72182964 72183410 3.010000e-156 562.0
4 TraesCS6D01G069700 chr6B 88.268 179 16 2 521 699 72181031 72181204 4.520000e-50 209.0
5 TraesCS6D01G069700 chr6B 87.387 111 9 4 417 525 72180773 72180880 6.060000e-24 122.0
6 TraesCS6D01G069700 chr6A 92.642 1427 64 19 1722 3127 39146139 39147545 0.000000e+00 2015.0
7 TraesCS6D01G069700 chr6A 85.535 954 91 20 3167 4108 39147543 39148461 0.000000e+00 953.0
8 TraesCS6D01G069700 chr6A 90.043 462 39 7 796 1254 39145322 39145779 3.840000e-165 592.0
9 TraesCS6D01G069700 chr6A 91.358 324 28 0 1 324 39144620 39144943 1.140000e-120 444.0
10 TraesCS6D01G069700 chr6A 90.536 317 20 6 391 702 39144947 39145258 1.160000e-110 411.0
11 TraesCS6D01G069700 chr7A 83.201 756 100 19 3368 4115 644854560 644855296 0.000000e+00 667.0
12 TraesCS6D01G069700 chr7B 82.933 750 97 18 3364 4107 608474723 608475447 0.000000e+00 647.0
13 TraesCS6D01G069700 chr7D 84.346 428 61 6 3681 4107 560674378 560674800 8.930000e-112 414.0
14 TraesCS6D01G069700 chr3D 92.157 51 4 0 365 415 170965300 170965250 6.190000e-09 73.1
15 TraesCS6D01G069700 chr1B 87.719 57 5 2 365 421 546856279 546856225 1.040000e-06 65.8
16 TraesCS6D01G069700 chr1B 87.719 57 5 2 365 421 546963331 546963277 1.040000e-06 65.8
17 TraesCS6D01G069700 chr2A 89.130 46 4 1 365 410 85295795 85295839 6.240000e-04 56.5
18 TraesCS6D01G069700 chr1D 92.500 40 2 1 365 404 406671275 406671313 6.240000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G069700 chr6D 34974254 34978715 4461 False 8240 8240 100.0000 1 4462 1 chr6D.!!$F1 4461
1 TraesCS6D01G069700 chr6B 72180773 72186647 5874 False 965 2497 90.0952 417 4437 5 chr6B.!!$F1 4020
2 TraesCS6D01G069700 chr6A 39144620 39148461 3841 False 883 2015 90.0228 1 4108 5 chr6A.!!$F1 4107
3 TraesCS6D01G069700 chr7A 644854560 644855296 736 False 667 667 83.2010 3368 4115 1 chr7A.!!$F1 747
4 TraesCS6D01G069700 chr7B 608474723 608475447 724 False 647 647 82.9330 3364 4107 1 chr7B.!!$F1 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 2594 0.035152 TAGGTGTCGCCGGAGACTAA 60.035 55.0 33.69 16.21 43.70 2.24 F
1822 3669 0.171903 ATGACCAGTACGTGTACCGC 59.828 55.0 0.00 0.00 41.42 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2213 4068 0.467844 TTCAGTGCAACATGGGCTGT 60.468 50.0 12.08 0.0 41.43 4.4 R
3725 5767 0.106708 GTGCGAGGATCAGGCCAATA 59.893 55.0 5.01 0.0 33.17 1.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.158842 TGGTTGCAGGAAAATGTTTGGG 60.159 45.455 0.00 0.00 0.00 4.12
32 33 2.825532 CAGGAAAATGTTTGGGGACGAT 59.174 45.455 0.00 0.00 0.00 3.73
104 105 1.445410 CGCATCGAAGTTCACGGGA 60.445 57.895 3.32 0.00 0.00 5.14
107 108 0.721718 CATCGAAGTTCACGGGAAGC 59.278 55.000 0.00 0.00 32.62 3.86
110 111 1.301479 GAAGTTCACGGGAAGCGGT 60.301 57.895 0.00 0.00 32.62 5.68
143 144 4.388499 ATGTGCCCGGACGGTGAC 62.388 66.667 0.73 6.26 0.00 3.67
244 245 0.251077 ACAAAGGAGGAGCTGGCAAG 60.251 55.000 0.00 0.00 0.00 4.01
257 258 2.159462 GCTGGCAAGCTTATCAAGTCAC 60.159 50.000 5.60 0.00 46.60 3.67
300 301 7.506114 TCATATATTCAAATATACGCCCTCCC 58.494 38.462 4.92 0.00 36.85 4.30
313 314 1.049402 CCCTCCCTCCCGAATTAGTC 58.951 60.000 0.00 0.00 0.00 2.59
327 328 6.642659 CGAATTAGTCGTCTTAGATTCGTC 57.357 41.667 18.01 0.00 45.09 4.20
328 329 6.420588 CGAATTAGTCGTCTTAGATTCGTCT 58.579 40.000 18.01 1.84 45.09 4.18
329 330 7.562412 CGAATTAGTCGTCTTAGATTCGTCTA 58.438 38.462 18.01 1.05 45.09 2.59
330 331 7.736880 CGAATTAGTCGTCTTAGATTCGTCTAG 59.263 40.741 18.01 0.00 45.09 2.43
331 332 8.659925 AATTAGTCGTCTTAGATTCGTCTAGA 57.340 34.615 0.00 0.00 30.50 2.43
332 333 8.836268 ATTAGTCGTCTTAGATTCGTCTAGAT 57.164 34.615 0.00 0.00 30.50 1.98
333 334 9.926158 ATTAGTCGTCTTAGATTCGTCTAGATA 57.074 33.333 0.00 0.00 30.50 1.98
334 335 7.642071 AGTCGTCTTAGATTCGTCTAGATAC 57.358 40.000 0.00 0.00 0.00 2.24
335 336 6.363088 AGTCGTCTTAGATTCGTCTAGATACG 59.637 42.308 0.00 0.00 44.19 3.06
336 337 6.143758 GTCGTCTTAGATTCGTCTAGATACGT 59.856 42.308 0.00 0.00 43.31 3.57
337 338 7.324856 GTCGTCTTAGATTCGTCTAGATACGTA 59.675 40.741 0.00 0.00 43.31 3.57
338 339 8.026026 TCGTCTTAGATTCGTCTAGATACGTAT 58.974 37.037 8.05 8.05 43.31 3.06
339 340 8.103320 CGTCTTAGATTCGTCTAGATACGTATG 58.897 40.741 13.97 0.00 43.31 2.39
340 341 7.899330 GTCTTAGATTCGTCTAGATACGTATGC 59.101 40.741 13.97 4.92 43.31 3.14
341 342 7.601508 TCTTAGATTCGTCTAGATACGTATGCA 59.398 37.037 13.97 0.00 43.31 3.96
342 343 6.745159 AGATTCGTCTAGATACGTATGCAT 57.255 37.500 13.97 3.79 43.31 3.96
343 344 6.777101 AGATTCGTCTAGATACGTATGCATC 58.223 40.000 13.97 0.00 43.31 3.91
344 345 5.934935 TTCGTCTAGATACGTATGCATCA 57.065 39.130 13.97 0.00 43.31 3.07
345 346 5.532025 TCGTCTAGATACGTATGCATCAG 57.468 43.478 13.97 0.30 43.31 2.90
346 347 5.235516 TCGTCTAGATACGTATGCATCAGA 58.764 41.667 13.97 5.12 43.31 3.27
347 348 5.120363 TCGTCTAGATACGTATGCATCAGAC 59.880 44.000 13.97 14.74 43.31 3.51
348 349 5.107065 CGTCTAGATACGTATGCATCAGACA 60.107 44.000 13.97 0.00 38.07 3.41
349 350 6.081049 GTCTAGATACGTATGCATCAGACAC 58.919 44.000 13.97 0.00 33.84 3.67
350 351 3.890128 AGATACGTATGCATCAGACACG 58.110 45.455 13.97 15.49 38.52 4.49
351 352 3.315470 AGATACGTATGCATCAGACACGT 59.685 43.478 23.47 23.47 46.49 4.49
352 353 2.363788 ACGTATGCATCAGACACGTT 57.636 45.000 16.68 4.14 42.69 3.99
353 354 2.683968 ACGTATGCATCAGACACGTTT 58.316 42.857 16.68 0.00 42.69 3.60
354 355 3.064207 ACGTATGCATCAGACACGTTTT 58.936 40.909 16.68 0.00 42.69 2.43
355 356 4.239304 ACGTATGCATCAGACACGTTTTA 58.761 39.130 16.68 0.00 42.69 1.52
356 357 4.326278 ACGTATGCATCAGACACGTTTTAG 59.674 41.667 16.68 0.00 42.69 1.85
357 358 4.326278 CGTATGCATCAGACACGTTTTAGT 59.674 41.667 0.19 0.00 0.00 2.24
358 359 4.668576 ATGCATCAGACACGTTTTAGTG 57.331 40.909 0.00 0.00 46.83 2.74
367 368 2.741612 CACGTTTTAGTGTCGGGTACA 58.258 47.619 0.00 0.00 37.35 2.90
368 369 3.319755 CACGTTTTAGTGTCGGGTACAT 58.680 45.455 0.00 0.00 41.10 2.29
369 370 3.742369 CACGTTTTAGTGTCGGGTACATT 59.258 43.478 0.00 0.00 41.10 2.71
370 371 4.211794 CACGTTTTAGTGTCGGGTACATTT 59.788 41.667 0.00 0.00 41.10 2.32
371 372 4.211794 ACGTTTTAGTGTCGGGTACATTTG 59.788 41.667 0.00 0.00 41.10 2.32
372 373 4.211794 CGTTTTAGTGTCGGGTACATTTGT 59.788 41.667 0.00 0.00 41.10 2.83
373 374 5.404968 CGTTTTAGTGTCGGGTACATTTGTA 59.595 40.000 0.00 0.00 41.10 2.41
374 375 6.091169 CGTTTTAGTGTCGGGTACATTTGTAT 59.909 38.462 0.00 0.00 41.10 2.29
375 376 7.458677 GTTTTAGTGTCGGGTACATTTGTATC 58.541 38.462 0.00 0.00 41.10 2.24
376 377 6.534475 TTAGTGTCGGGTACATTTGTATCT 57.466 37.500 0.00 0.00 41.10 1.98
377 378 7.643569 TTAGTGTCGGGTACATTTGTATCTA 57.356 36.000 0.00 0.00 41.10 1.98
378 379 6.145338 AGTGTCGGGTACATTTGTATCTAG 57.855 41.667 0.00 0.00 41.10 2.43
379 380 5.889853 AGTGTCGGGTACATTTGTATCTAGA 59.110 40.000 0.00 0.00 41.10 2.43
380 381 5.975939 GTGTCGGGTACATTTGTATCTAGAC 59.024 44.000 16.09 16.09 41.10 2.59
381 382 5.653330 TGTCGGGTACATTTGTATCTAGACA 59.347 40.000 19.10 19.10 41.64 3.41
382 383 6.153170 TGTCGGGTACATTTGTATCTAGACAA 59.847 38.462 19.95 0.00 41.33 3.18
408 409 6.239396 TCTAAAACAACATATTTGGGACGGA 58.761 36.000 0.00 0.00 0.00 4.69
415 416 5.382664 ACATATTTGGGACGGAGGTAATT 57.617 39.130 0.00 0.00 0.00 1.40
418 419 4.519906 ATTTGGGACGGAGGTAATTGAT 57.480 40.909 0.00 0.00 0.00 2.57
460 461 2.799126 TTGTTGTCACCACAGGAGTT 57.201 45.000 0.00 0.00 32.71 3.01
463 466 1.940613 GTTGTCACCACAGGAGTTCAC 59.059 52.381 0.00 0.00 32.71 3.18
469 472 3.945285 TCACCACAGGAGTTCACTTTTTC 59.055 43.478 0.00 0.00 0.00 2.29
476 479 7.363431 CACAGGAGTTCACTTTTTCCTTATTC 58.637 38.462 0.00 0.00 37.97 1.75
538 695 6.096036 TGTTTCATACTTTTTGTGTGTGTGG 58.904 36.000 0.00 0.00 38.65 4.17
595 752 6.465948 TGATGCATGCAAAATAAAAGGTTCT 58.534 32.000 26.68 1.78 0.00 3.01
602 759 9.868389 CATGCAAAATAAAAGGTTCTTTTTCTC 57.132 29.630 10.34 0.00 32.79 2.87
639 796 3.996363 TGTCAGTTGATCAGAACCAATCG 59.004 43.478 0.00 0.00 0.00 3.34
668 825 2.473768 TCCATTGCTGGAGGTGGAA 58.526 52.632 3.51 0.00 46.95 3.53
677 834 4.252493 GAGGTGGAAACCCTCCCT 57.748 61.111 0.00 0.00 44.69 4.20
678 835 1.992037 GAGGTGGAAACCCTCCCTC 59.008 63.158 0.00 0.00 44.69 4.30
679 836 1.541620 AGGTGGAAACCCTCCCTCC 60.542 63.158 0.00 0.00 44.69 4.30
680 837 2.669240 GTGGAAACCCTCCCTCCG 59.331 66.667 0.00 0.00 44.69 4.63
700 857 0.674269 GCTTCAGCTCAGCTCTGCTT 60.674 55.000 0.00 0.00 36.40 3.91
702 859 2.934364 GCTTCAGCTCAGCTCTGCTTAA 60.934 50.000 0.00 5.76 36.40 1.85
703 860 3.533547 CTTCAGCTCAGCTCTGCTTAAT 58.466 45.455 0.00 0.00 36.40 1.40
706 863 1.209990 AGCTCAGCTCTGCTTAATGCT 59.790 47.619 0.00 0.00 36.40 3.79
708 865 2.211806 CTCAGCTCTGCTTAATGCTCC 58.788 52.381 0.00 0.00 43.37 4.70
710 867 0.914644 AGCTCTGCTTAATGCTCCCA 59.085 50.000 0.00 0.00 43.37 4.37
713 870 0.107703 TCTGCTTAATGCTCCCACCG 60.108 55.000 0.00 0.00 43.37 4.94
715 872 2.481471 GCTTAATGCTCCCACCGGC 61.481 63.158 0.00 0.00 38.95 6.13
716 873 1.077787 CTTAATGCTCCCACCGGCA 60.078 57.895 0.00 0.00 42.80 5.69
717 874 1.077787 TTAATGCTCCCACCGGCAG 60.078 57.895 0.00 0.00 41.88 4.85
742 899 2.506438 CGGTCGCCGGAGAAGAAC 60.506 66.667 10.32 1.80 44.15 3.01
743 900 2.125633 GGTCGCCGGAGAAGAACC 60.126 66.667 10.32 3.37 0.00 3.62
746 903 1.987855 TCGCCGGAGAAGAACCCAT 60.988 57.895 5.05 0.00 0.00 4.00
747 904 1.078426 CGCCGGAGAAGAACCCATT 60.078 57.895 5.05 0.00 0.00 3.16
748 905 0.676782 CGCCGGAGAAGAACCCATTT 60.677 55.000 5.05 0.00 0.00 2.32
749 906 1.545841 GCCGGAGAAGAACCCATTTT 58.454 50.000 5.05 0.00 0.00 1.82
750 907 1.893137 GCCGGAGAAGAACCCATTTTT 59.107 47.619 5.05 0.00 0.00 1.94
771 2594 0.035152 TAGGTGTCGCCGGAGACTAA 60.035 55.000 33.69 16.21 43.70 2.24
773 2596 1.153881 GTGTCGCCGGAGACTAACC 60.154 63.158 33.69 17.85 41.47 2.85
791 2614 2.125106 GAGGCGGCCTCGTTCATT 60.125 61.111 31.44 2.62 41.08 2.57
797 2632 1.425428 GGCCTCGTTCATTTCGCTG 59.575 57.895 0.00 0.00 0.00 5.18
840 2675 3.753434 AGCCCACGAGTCGCTCAG 61.753 66.667 13.59 0.00 0.00 3.35
878 2714 3.365265 CCAAAGCCCACCACGCTC 61.365 66.667 0.00 0.00 34.84 5.03
945 2781 4.530857 CCACCGGACGCCATCTCC 62.531 72.222 9.46 0.00 0.00 3.71
1012 2848 2.900273 CTCGGATGGCGGGAGAAA 59.100 61.111 0.00 0.00 0.00 2.52
1185 3022 0.800631 CCGCCGGTAAAAGAAAGACC 59.199 55.000 1.90 0.00 0.00 3.85
1188 3025 1.445871 CCGGTAAAAGAAAGACCCCG 58.554 55.000 0.00 0.00 0.00 5.73
1189 3026 0.800631 CGGTAAAAGAAAGACCCCGC 59.199 55.000 0.00 0.00 0.00 6.13
1197 3034 0.322187 GAAAGACCCCGCCTTTGCTA 60.322 55.000 0.00 0.00 34.33 3.49
1203 3040 4.778143 CCGCCTTTGCTACGCCCT 62.778 66.667 0.00 0.00 34.43 5.19
1204 3041 3.195698 CGCCTTTGCTACGCCCTC 61.196 66.667 0.00 0.00 34.43 4.30
1205 3042 2.269241 GCCTTTGCTACGCCCTCT 59.731 61.111 0.00 0.00 33.53 3.69
1206 3043 1.377333 GCCTTTGCTACGCCCTCTT 60.377 57.895 0.00 0.00 33.53 2.85
1207 3044 0.960861 GCCTTTGCTACGCCCTCTTT 60.961 55.000 0.00 0.00 33.53 2.52
1208 3045 1.677820 GCCTTTGCTACGCCCTCTTTA 60.678 52.381 0.00 0.00 33.53 1.85
1209 3046 2.007608 CCTTTGCTACGCCCTCTTTAC 58.992 52.381 0.00 0.00 0.00 2.01
1212 3049 1.263356 TGCTACGCCCTCTTTACTGT 58.737 50.000 0.00 0.00 0.00 3.55
1220 3057 3.194116 CGCCCTCTTTACTGTTGTACCTA 59.806 47.826 0.00 0.00 0.00 3.08
1254 3091 5.269505 GCTTAGAGCTCTGTTCTATTGGA 57.730 43.478 26.78 0.00 38.45 3.53
1255 3092 5.852827 GCTTAGAGCTCTGTTCTATTGGAT 58.147 41.667 26.78 0.00 38.45 3.41
1256 3093 6.987386 GCTTAGAGCTCTGTTCTATTGGATA 58.013 40.000 26.78 0.00 38.45 2.59
1257 3094 6.866248 GCTTAGAGCTCTGTTCTATTGGATAC 59.134 42.308 26.78 0.00 38.45 2.24
1258 3095 7.470702 GCTTAGAGCTCTGTTCTATTGGATACA 60.471 40.741 26.78 0.00 41.72 2.29
1276 3113 8.321621 TGGATACAGTACTACTCTAGTCTTCT 57.678 38.462 0.00 0.00 46.17 2.85
1277 3114 9.431690 TGGATACAGTACTACTCTAGTCTTCTA 57.568 37.037 0.00 0.00 46.17 2.10
1278 3115 9.696917 GGATACAGTACTACTCTAGTCTTCTAC 57.303 40.741 0.00 0.00 40.14 2.59
1282 3119 9.479549 ACAGTACTACTCTAGTCTTCTACTACT 57.520 37.037 0.00 0.00 39.80 2.57
1290 3127 7.564660 ACTCTAGTCTTCTACTACTAGGTAGCA 59.435 40.741 9.06 0.00 43.51 3.49
1293 3130 9.211485 CTAGTCTTCTACTACTAGGTAGCATTC 57.789 40.741 4.82 0.00 40.91 2.67
1297 3134 7.603404 TCTTCTACTACTAGGTAGCATTCGATC 59.397 40.741 4.82 0.00 39.51 3.69
1310 3147 3.452474 CATTCGATCTCTGGAGTGGAAC 58.548 50.000 0.00 0.00 0.00 3.62
1311 3148 1.475403 TCGATCTCTGGAGTGGAACC 58.525 55.000 0.00 0.00 37.80 3.62
1312 3149 1.006043 TCGATCTCTGGAGTGGAACCT 59.994 52.381 0.00 0.00 37.80 3.50
1313 3150 1.407258 CGATCTCTGGAGTGGAACCTC 59.593 57.143 0.00 0.00 37.80 3.85
1314 3151 1.407258 GATCTCTGGAGTGGAACCTCG 59.593 57.143 0.00 0.00 37.80 4.63
1315 3152 1.216710 CTCTGGAGTGGAACCTCGC 59.783 63.158 0.00 0.00 37.80 5.03
1316 3153 1.228894 TCTGGAGTGGAACCTCGCT 60.229 57.895 0.00 0.00 37.80 4.93
1317 3154 1.079543 CTGGAGTGGAACCTCGCTG 60.080 63.158 0.00 0.00 37.80 5.18
1318 3155 2.435059 GGAGTGGAACCTCGCTGC 60.435 66.667 0.00 0.00 37.80 5.25
1326 3163 2.100916 TGGAACCTCGCTGCTATTAGAC 59.899 50.000 0.00 0.00 0.00 2.59
1329 3166 1.957877 ACCTCGCTGCTATTAGACTCC 59.042 52.381 0.00 0.00 0.00 3.85
1337 3174 4.739137 GCTGCTATTAGACTCCCACTTCTG 60.739 50.000 0.00 0.00 0.00 3.02
1353 3190 2.645838 TCTGAAGTGGAGCTTGCTTT 57.354 45.000 0.00 0.00 37.59 3.51
1354 3191 2.936202 TCTGAAGTGGAGCTTGCTTTT 58.064 42.857 0.00 0.00 37.59 2.27
1389 3226 6.011476 ACGGAAGTTCTAGTCTTTCTGTAC 57.989 41.667 2.25 0.00 46.40 2.90
1405 3242 7.931407 TCTTTCTGTACTGCTTATTGACTGAAA 59.069 33.333 0.00 0.00 36.34 2.69
1415 3252 9.844790 CTGCTTATTGACTGAAATGATTGTTTA 57.155 29.630 0.00 0.00 0.00 2.01
1435 3272 9.853555 TTGTTTAAGCATATGTTGAACTATTGG 57.146 29.630 17.80 0.00 0.00 3.16
1436 3273 8.465999 TGTTTAAGCATATGTTGAACTATTGGG 58.534 33.333 17.80 0.00 0.00 4.12
1437 3274 8.466798 GTTTAAGCATATGTTGAACTATTGGGT 58.533 33.333 4.29 0.00 0.00 4.51
1438 3275 9.688091 TTTAAGCATATGTTGAACTATTGGGTA 57.312 29.630 4.29 0.00 0.00 3.69
1439 3276 9.860650 TTAAGCATATGTTGAACTATTGGGTAT 57.139 29.630 4.29 0.00 0.00 2.73
1440 3277 7.750229 AGCATATGTTGAACTATTGGGTATG 57.250 36.000 4.29 0.00 0.00 2.39
1441 3278 7.517320 AGCATATGTTGAACTATTGGGTATGA 58.483 34.615 4.29 0.00 0.00 2.15
1442 3279 7.998383 AGCATATGTTGAACTATTGGGTATGAA 59.002 33.333 4.29 0.00 0.00 2.57
1443 3280 8.076178 GCATATGTTGAACTATTGGGTATGAAC 58.924 37.037 4.29 0.00 0.00 3.18
1444 3281 9.342308 CATATGTTGAACTATTGGGTATGAACT 57.658 33.333 0.00 0.00 0.00 3.01
1458 3295 5.105917 GGGTATGAACTGGTTACATGGTTTG 60.106 44.000 0.00 0.00 0.00 2.93
1461 3298 3.067461 TGAACTGGTTACATGGTTTGCAC 59.933 43.478 0.00 0.00 0.00 4.57
1462 3299 1.606668 ACTGGTTACATGGTTTGCACG 59.393 47.619 0.00 0.00 0.00 5.34
1469 3306 2.025155 ACATGGTTTGCACGGTTGTTA 58.975 42.857 0.00 0.00 0.00 2.41
1475 3312 3.003897 GGTTTGCACGGTTGTTATGAGAA 59.996 43.478 0.00 0.00 0.00 2.87
1476 3313 3.889196 TTGCACGGTTGTTATGAGAAC 57.111 42.857 0.00 0.00 0.00 3.01
1487 3325 6.595716 GGTTGTTATGAGAACATCAGCTACTT 59.404 38.462 0.00 0.00 42.53 2.24
1489 3327 8.596380 GTTGTTATGAGAACATCAGCTACTTAC 58.404 37.037 0.00 0.00 42.53 2.34
1490 3328 7.836842 TGTTATGAGAACATCAGCTACTTACA 58.163 34.615 0.00 0.00 42.53 2.41
1491 3329 7.976175 TGTTATGAGAACATCAGCTACTTACAG 59.024 37.037 0.00 0.00 42.53 2.74
1493 3331 5.955488 TGAGAACATCAGCTACTTACAGTC 58.045 41.667 0.00 0.00 32.77 3.51
1494 3332 4.987832 AGAACATCAGCTACTTACAGTCG 58.012 43.478 0.00 0.00 0.00 4.18
1495 3333 4.700692 AGAACATCAGCTACTTACAGTCGA 59.299 41.667 0.00 0.00 0.00 4.20
1497 3335 5.584253 ACATCAGCTACTTACAGTCGAAT 57.416 39.130 0.00 0.00 0.00 3.34
1498 3336 6.694877 ACATCAGCTACTTACAGTCGAATA 57.305 37.500 0.00 0.00 0.00 1.75
1499 3337 6.730175 ACATCAGCTACTTACAGTCGAATAG 58.270 40.000 0.00 0.00 0.00 1.73
1500 3338 5.171147 TCAGCTACTTACAGTCGAATAGC 57.829 43.478 0.00 0.00 36.19 2.97
1502 3340 4.735822 CAGCTACTTACAGTCGAATAGCAC 59.264 45.833 5.93 0.00 37.98 4.40
1503 3341 4.398358 AGCTACTTACAGTCGAATAGCACA 59.602 41.667 5.93 0.00 37.98 4.57
1505 3343 5.749109 GCTACTTACAGTCGAATAGCACAAT 59.251 40.000 0.00 0.00 36.03 2.71
1509 3347 7.519002 ACTTACAGTCGAATAGCACAATTTTC 58.481 34.615 0.00 0.00 0.00 2.29
1510 3348 5.940192 ACAGTCGAATAGCACAATTTTCA 57.060 34.783 0.00 0.00 0.00 2.69
1511 3349 6.312399 ACAGTCGAATAGCACAATTTTCAA 57.688 33.333 0.00 0.00 0.00 2.69
1512 3350 6.142817 ACAGTCGAATAGCACAATTTTCAAC 58.857 36.000 0.00 0.00 0.00 3.18
1513 3351 5.569059 CAGTCGAATAGCACAATTTTCAACC 59.431 40.000 0.00 0.00 0.00 3.77
1514 3352 5.240623 AGTCGAATAGCACAATTTTCAACCA 59.759 36.000 0.00 0.00 0.00 3.67
1515 3353 5.569059 GTCGAATAGCACAATTTTCAACCAG 59.431 40.000 0.00 0.00 0.00 4.00
1516 3354 5.471797 TCGAATAGCACAATTTTCAACCAGA 59.528 36.000 0.00 0.00 0.00 3.86
1517 3355 5.796935 CGAATAGCACAATTTTCAACCAGAG 59.203 40.000 0.00 0.00 0.00 3.35
1518 3356 6.348458 CGAATAGCACAATTTTCAACCAGAGA 60.348 38.462 0.00 0.00 0.00 3.10
1519 3357 6.899393 ATAGCACAATTTTCAACCAGAGAA 57.101 33.333 0.00 0.00 0.00 2.87
1520 3358 5.796424 AGCACAATTTTCAACCAGAGAAT 57.204 34.783 0.00 0.00 32.84 2.40
1521 3359 5.535333 AGCACAATTTTCAACCAGAGAATG 58.465 37.500 0.00 0.00 31.94 2.67
1522 3360 4.151157 GCACAATTTTCAACCAGAGAATGC 59.849 41.667 0.00 0.00 31.94 3.56
1523 3361 5.291178 CACAATTTTCAACCAGAGAATGCA 58.709 37.500 0.00 0.00 31.94 3.96
1524 3362 5.929992 CACAATTTTCAACCAGAGAATGCAT 59.070 36.000 0.00 0.00 31.94 3.96
1527 3365 5.787953 TTTTCAACCAGAGAATGCATTCA 57.212 34.783 34.59 13.83 39.23 2.57
1531 3369 5.258841 TCAACCAGAGAATGCATTCAATCT 58.741 37.500 34.59 27.01 39.23 2.40
1539 3377 1.466856 TGCATTCAATCTCCACCTGC 58.533 50.000 0.00 0.00 0.00 4.85
1542 3380 2.223735 GCATTCAATCTCCACCTGCATG 60.224 50.000 0.00 0.00 0.00 4.06
1546 3384 2.240414 TCAATCTCCACCTGCATGATGT 59.760 45.455 0.00 0.00 0.00 3.06
1547 3385 2.343484 ATCTCCACCTGCATGATGTG 57.657 50.000 0.00 0.00 0.00 3.21
1615 3457 5.779806 ACGTATTTTATGTCTCTGTGTGC 57.220 39.130 0.00 0.00 0.00 4.57
1616 3458 5.234752 ACGTATTTTATGTCTCTGTGTGCA 58.765 37.500 0.00 0.00 0.00 4.57
1618 3460 5.348724 CGTATTTTATGTCTCTGTGTGCACT 59.651 40.000 19.41 0.00 0.00 4.40
1619 3461 5.869753 ATTTTATGTCTCTGTGTGCACTC 57.130 39.130 19.41 15.51 0.00 3.51
1620 3462 4.607293 TTTATGTCTCTGTGTGCACTCT 57.393 40.909 19.41 0.00 0.00 3.24
1621 3463 2.452295 ATGTCTCTGTGTGCACTCTG 57.548 50.000 19.41 17.94 0.00 3.35
1650 3495 8.094798 TCTGGTGCTGTAATTTTAGTTAACAG 57.905 34.615 8.61 0.00 0.00 3.16
1652 3497 8.094798 TGGTGCTGTAATTTTAGTTAACAGAG 57.905 34.615 8.61 0.00 0.00 3.35
1668 3513 7.766278 AGTTAACAGAGTATTGCAATGACCTAG 59.234 37.037 22.27 12.18 0.00 3.02
1670 3515 6.791867 ACAGAGTATTGCAATGACCTAGTA 57.208 37.500 22.27 0.00 0.00 1.82
1672 3517 7.796054 ACAGAGTATTGCAATGACCTAGTATT 58.204 34.615 22.27 0.00 0.00 1.89
1674 3519 9.935241 CAGAGTATTGCAATGACCTAGTATTAT 57.065 33.333 22.27 0.00 0.00 1.28
1680 3525 7.241042 TGCAATGACCTAGTATTATACTCCC 57.759 40.000 8.29 0.00 40.14 4.30
1681 3526 7.016914 TGCAATGACCTAGTATTATACTCCCT 58.983 38.462 8.29 0.00 40.14 4.20
1683 3528 7.397761 GCAATGACCTAGTATTATACTCCCTCT 59.602 40.741 8.29 0.00 40.14 3.69
1684 3529 8.744652 CAATGACCTAGTATTATACTCCCTCTG 58.255 40.741 8.29 0.00 40.14 3.35
1685 3530 7.403837 TGACCTAGTATTATACTCCCTCTGT 57.596 40.000 8.29 0.00 40.14 3.41
1686 3531 7.460071 TGACCTAGTATTATACTCCCTCTGTC 58.540 42.308 8.29 8.06 40.14 3.51
1687 3532 6.792424 ACCTAGTATTATACTCCCTCTGTCC 58.208 44.000 8.29 0.00 40.14 4.02
1688 3533 6.189133 CCTAGTATTATACTCCCTCTGTCCC 58.811 48.000 8.29 0.00 40.14 4.46
1689 3534 5.681494 AGTATTATACTCCCTCTGTCCCA 57.319 43.478 0.00 0.00 32.47 4.37
1690 3535 6.234404 AGTATTATACTCCCTCTGTCCCAT 57.766 41.667 0.00 0.00 32.47 4.00
1691 3536 7.358255 AGTATTATACTCCCTCTGTCCCATA 57.642 40.000 0.00 0.00 32.47 2.74
1692 3537 7.776745 AGTATTATACTCCCTCTGTCCCATAA 58.223 38.462 0.00 0.00 32.47 1.90
1693 3538 8.239478 AGTATTATACTCCCTCTGTCCCATAAA 58.761 37.037 0.00 0.00 32.47 1.40
1694 3539 7.947782 ATTATACTCCCTCTGTCCCATAAAA 57.052 36.000 0.00 0.00 0.00 1.52
1695 3540 7.947782 TTATACTCCCTCTGTCCCATAAAAT 57.052 36.000 0.00 0.00 0.00 1.82
1696 3541 6.848562 ATACTCCCTCTGTCCCATAAAATT 57.151 37.500 0.00 0.00 0.00 1.82
1697 3542 5.536497 ACTCCCTCTGTCCCATAAAATTT 57.464 39.130 0.00 0.00 0.00 1.82
1698 3543 5.903923 ACTCCCTCTGTCCCATAAAATTTT 58.096 37.500 8.75 8.75 0.00 1.82
1699 3544 5.716703 ACTCCCTCTGTCCCATAAAATTTTG 59.283 40.000 13.76 0.00 0.00 2.44
1700 3545 5.650283 TCCCTCTGTCCCATAAAATTTTGT 58.350 37.500 13.76 3.84 0.00 2.83
1701 3546 6.081356 TCCCTCTGTCCCATAAAATTTTGTT 58.919 36.000 13.76 0.00 0.00 2.83
1702 3547 6.556874 TCCCTCTGTCCCATAAAATTTTGTTT 59.443 34.615 13.76 0.00 0.00 2.83
1703 3548 7.730784 TCCCTCTGTCCCATAAAATTTTGTTTA 59.269 33.333 13.76 0.00 0.00 2.01
1704 3549 8.371699 CCCTCTGTCCCATAAAATTTTGTTTAA 58.628 33.333 13.76 0.00 0.00 1.52
1705 3550 9.423061 CCTCTGTCCCATAAAATTTTGTTTAAG 57.577 33.333 13.76 3.30 0.00 1.85
1706 3551 9.981114 CTCTGTCCCATAAAATTTTGTTTAAGT 57.019 29.630 13.76 0.00 0.00 2.24
1757 3603 4.228317 GTGAACTCTACTTTCAGTCGTCC 58.772 47.826 0.00 0.00 33.63 4.79
1760 3606 5.010719 TGAACTCTACTTTCAGTCGTCCAAT 59.989 40.000 0.00 0.00 0.00 3.16
1761 3607 5.470047 ACTCTACTTTCAGTCGTCCAATT 57.530 39.130 0.00 0.00 0.00 2.32
1765 3611 6.464222 TCTACTTTCAGTCGTCCAATTCATT 58.536 36.000 0.00 0.00 0.00 2.57
1773 3619 4.938226 AGTCGTCCAATTCATTTCTTCTCC 59.062 41.667 0.00 0.00 0.00 3.71
1795 3642 6.666678 TCCTTTCTTGGCAGATTATCTCAAT 58.333 36.000 0.00 0.00 0.00 2.57
1812 3659 3.449918 TCAATCCAGGACATGACCAGTA 58.550 45.455 16.63 0.00 0.00 2.74
1813 3660 3.197766 TCAATCCAGGACATGACCAGTAC 59.802 47.826 16.63 0.00 0.00 2.73
1822 3669 0.171903 ATGACCAGTACGTGTACCGC 59.828 55.000 0.00 0.00 41.42 5.68
1837 3684 1.377463 CCGCCATCCAAACGGGTAA 60.377 57.895 0.00 0.00 43.23 2.85
1852 3699 9.857957 CCAAACGGGTAAGCTTATTTTATTTTA 57.142 29.630 9.88 0.00 0.00 1.52
1878 3725 9.878599 ATTTCATTTGAGAACTTAAACAGTACG 57.121 29.630 0.00 0.00 32.94 3.67
1879 3726 6.884187 TCATTTGAGAACTTAAACAGTACGC 58.116 36.000 0.00 0.00 32.94 4.42
1880 3727 6.704493 TCATTTGAGAACTTAAACAGTACGCT 59.296 34.615 0.00 0.00 32.94 5.07
1881 3728 6.913873 TTTGAGAACTTAAACAGTACGCTT 57.086 33.333 0.00 0.00 32.94 4.68
1882 3729 6.913873 TTGAGAACTTAAACAGTACGCTTT 57.086 33.333 0.00 0.00 32.94 3.51
1883 3730 6.520792 TGAGAACTTAAACAGTACGCTTTC 57.479 37.500 0.00 0.00 32.94 2.62
1892 3739 1.798813 CAGTACGCTTTCAACAGGTCC 59.201 52.381 0.00 0.00 0.00 4.46
1912 3759 5.346522 GTCCAAATTGGCTTTCTCATGATC 58.653 41.667 7.24 0.00 37.47 2.92
1914 3761 5.105635 TCCAAATTGGCTTTCTCATGATCAC 60.106 40.000 7.24 0.00 37.47 3.06
1917 3764 1.303309 GGCTTTCTCATGATCACCGG 58.697 55.000 0.00 0.00 0.00 5.28
2062 3916 6.343716 TGGACAGATGCATTGTTTAATGTT 57.656 33.333 0.00 0.00 44.41 2.71
2132 3987 2.941891 TTTTGCTTAGCGACTTGACG 57.058 45.000 0.00 0.00 0.00 4.35
2181 4036 9.807921 ATTCTCTTTGGTTTCTTATGTTCCTTA 57.192 29.630 0.00 0.00 0.00 2.69
2213 4068 1.202663 TGTGCGTGGTTGGTTTAGCTA 60.203 47.619 0.00 0.00 0.00 3.32
2324 4179 3.006430 AGGGAAACGCAAAAGGGTAATTG 59.994 43.478 0.00 0.00 0.00 2.32
2342 4200 6.370718 GGTAATTGGAGTTGACGTATGTTCTT 59.629 38.462 0.00 0.00 0.00 2.52
2349 4207 7.042321 TGGAGTTGACGTATGTTCTTTGTTTAG 60.042 37.037 0.00 0.00 0.00 1.85
2386 4244 3.770263 ATCATTTGATGTGTGCTTCCG 57.230 42.857 0.00 0.00 32.68 4.30
2498 4356 3.755378 AGATCTCGCAATTGATTATGCCC 59.245 43.478 10.34 0.00 39.39 5.36
2499 4357 2.929641 TCTCGCAATTGATTATGCCCA 58.070 42.857 10.34 0.00 39.39 5.36
2500 4358 2.880268 TCTCGCAATTGATTATGCCCAG 59.120 45.455 10.34 0.00 39.39 4.45
2501 4359 2.620115 CTCGCAATTGATTATGCCCAGT 59.380 45.455 10.34 0.00 39.39 4.00
2546 4404 4.514066 AGTGTTGTCTACGTTCAATTTCCC 59.486 41.667 0.00 0.00 0.00 3.97
2695 4553 1.338294 TGTCGTTGTCGGTGGCATATT 60.338 47.619 0.00 0.00 37.69 1.28
2725 4583 2.287915 GGTGACGCCTACATGCATAAAG 59.712 50.000 0.00 0.00 0.00 1.85
2751 4769 6.826741 TGAACCACCTATATTTTCTAGTTGGC 59.173 38.462 0.00 0.00 33.35 4.52
2821 4839 3.375299 GCCTTTATGATCCATGCGTATCC 59.625 47.826 0.00 0.00 0.00 2.59
2838 4856 5.051641 GCGTATCCGAGAGATGTTTAAGTTG 60.052 44.000 0.00 0.00 36.33 3.16
2990 5011 6.032094 CAGTTTAACATGGATAAGCTTGCAG 58.968 40.000 9.86 0.00 0.00 4.41
3032 5053 5.904362 ATTTCCATTACCTCTGTTGAAGC 57.096 39.130 0.00 0.00 0.00 3.86
3083 5104 2.557920 AACCTTGCCTGTGAAGAGAG 57.442 50.000 0.00 0.00 0.00 3.20
3085 5106 1.346068 ACCTTGCCTGTGAAGAGAGTC 59.654 52.381 0.00 0.00 0.00 3.36
3095 5125 5.144692 TGTGAAGAGAGTCTGGATTCAAG 57.855 43.478 0.00 0.00 32.13 3.02
3167 5197 7.645058 TTTTTCTGAAACATGGAAAGAGACT 57.355 32.000 1.58 0.00 31.88 3.24
3267 5299 5.005094 CCAAATGCTTCACCCATTCAATTT 58.995 37.500 0.00 0.00 32.07 1.82
3306 5342 5.692204 CCTTGACTTCTGCGACGATATTTAT 59.308 40.000 0.00 0.00 0.00 1.40
3479 5515 3.485463 TGACACCAAAAGGTAGTCAGG 57.515 47.619 12.59 0.00 34.59 3.86
3725 5767 0.975040 AAGCTCAGGTCTCATCGGCT 60.975 55.000 0.00 0.00 0.00 5.52
3803 5851 7.611855 CCAACTCCAGATAAATTCACCTTTACT 59.388 37.037 0.00 0.00 0.00 2.24
3819 5867 4.876107 CCTTTACTGGCGTGATATTGAAGT 59.124 41.667 0.00 0.00 0.00 3.01
3839 5887 2.047061 TCTCTTGTAGTGGCCACAGTT 58.953 47.619 36.39 19.55 0.00 3.16
3936 5984 3.142174 ACTGTAGAGCAAGCTTTGGAAC 58.858 45.455 0.00 0.00 0.00 3.62
3939 5987 0.179018 AGAGCAAGCTTTGGAACCGT 60.179 50.000 0.00 0.00 0.00 4.83
3962 6010 9.098355 CCGTAATCATTTGAAGTTCATAGAGAA 57.902 33.333 6.36 0.00 0.00 2.87
4108 6162 0.539986 GGAGGCGGACCAGTTCATTA 59.460 55.000 0.00 0.00 39.06 1.90
4120 6174 6.442513 ACCAGTTCATTAGCTTATCTTTGC 57.557 37.500 0.00 0.00 0.00 3.68
4123 6177 6.749118 CCAGTTCATTAGCTTATCTTTGCAAC 59.251 38.462 0.00 0.00 0.00 4.17
4124 6178 7.307694 CAGTTCATTAGCTTATCTTTGCAACA 58.692 34.615 0.00 0.00 0.00 3.33
4125 6179 7.809331 CAGTTCATTAGCTTATCTTTGCAACAA 59.191 33.333 0.00 0.00 0.00 2.83
4126 6180 8.359642 AGTTCATTAGCTTATCTTTGCAACAAA 58.640 29.630 0.00 0.00 0.00 2.83
4127 6181 8.977505 GTTCATTAGCTTATCTTTGCAACAAAA 58.022 29.630 0.00 0.00 0.00 2.44
4128 6182 9.709495 TTCATTAGCTTATCTTTGCAACAAAAT 57.291 25.926 0.00 0.00 0.00 1.82
4143 6197 8.060020 TGCAACAAAATAAAGAAGTTCATTCG 57.940 30.769 5.50 0.00 43.16 3.34
4163 6217 7.990886 TCATTCGCTTATAATTCTACCTGGTTT 59.009 33.333 3.84 0.00 0.00 3.27
4183 6237 5.701750 GGTTTCTGACTACCTTTCTTCTTCC 59.298 44.000 1.82 0.00 0.00 3.46
4198 6252 5.403512 TCTTCTTCCCTTCTGTTCTCCTAA 58.596 41.667 0.00 0.00 0.00 2.69
4208 6262 7.094592 CCCTTCTGTTCTCCTAAATGTTTCTTC 60.095 40.741 0.00 0.00 0.00 2.87
4238 6292 7.557358 ACATGCTATGAAATCACAATACTTCCA 59.443 33.333 0.00 0.00 0.00 3.53
4248 6302 6.618287 TCACAATACTTCCAAAGACAACTG 57.382 37.500 0.00 0.00 0.00 3.16
4250 6304 4.278419 ACAATACTTCCAAAGACAACTGCC 59.722 41.667 0.00 0.00 0.00 4.85
4258 6312 1.696063 AAGACAACTGCCAGCACATT 58.304 45.000 0.00 0.00 0.00 2.71
4263 6317 3.221771 ACAACTGCCAGCACATTTTCTA 58.778 40.909 0.00 0.00 0.00 2.10
4265 6319 4.171005 CAACTGCCAGCACATTTTCTATG 58.829 43.478 0.00 0.00 0.00 2.23
4273 6327 6.057533 CCAGCACATTTTCTATGGTCTATCA 58.942 40.000 0.00 0.00 0.00 2.15
4286 6340 5.705609 TGGTCTATCAAAACAAAAGCTCC 57.294 39.130 0.00 0.00 0.00 4.70
4287 6341 5.385198 TGGTCTATCAAAACAAAAGCTCCT 58.615 37.500 0.00 0.00 0.00 3.69
4301 6355 3.274095 AGCTCCTCCAGATTTAAGCAC 57.726 47.619 0.00 0.00 32.25 4.40
4321 6375 6.237901 AGCACACAAGGTTCACATTAGATTA 58.762 36.000 0.00 0.00 0.00 1.75
4322 6376 6.372659 AGCACACAAGGTTCACATTAGATTAG 59.627 38.462 0.00 0.00 0.00 1.73
4353 6407 2.507886 TGAGAGGAACAACCCTGAAACA 59.492 45.455 0.00 0.00 40.05 2.83
4355 6409 2.509964 AGAGGAACAACCCTGAAACACT 59.490 45.455 0.00 0.00 40.05 3.55
4356 6410 2.879026 GAGGAACAACCCTGAAACACTC 59.121 50.000 0.00 0.00 40.05 3.51
4401 6456 0.314935 ACAAGGCAATGCTTCAACCG 59.685 50.000 4.82 0.00 0.00 4.44
4406 6461 1.202114 GGCAATGCTTCAACCGATGAA 59.798 47.619 4.82 4.00 45.71 2.57
4413 6468 4.260985 TGCTTCAACCGATGAATGTACAT 58.739 39.130 1.41 1.41 46.62 2.29
4445 6500 6.892485 ACATCTGTGATTATGATCAGTTGGA 58.108 36.000 0.09 0.00 42.73 3.53
4446 6501 6.765036 ACATCTGTGATTATGATCAGTTGGAC 59.235 38.462 0.09 0.00 42.73 4.02
4447 6502 5.674525 TCTGTGATTATGATCAGTTGGACC 58.325 41.667 0.09 0.00 42.73 4.46
4448 6503 4.441792 TGTGATTATGATCAGTTGGACCG 58.558 43.478 0.09 0.00 42.73 4.79
4449 6504 4.161377 TGTGATTATGATCAGTTGGACCGA 59.839 41.667 0.09 0.00 42.73 4.69
4450 6505 4.508124 GTGATTATGATCAGTTGGACCGAC 59.492 45.833 3.32 3.32 42.73 4.79
4451 6506 4.161377 TGATTATGATCAGTTGGACCGACA 59.839 41.667 14.58 0.00 37.37 4.35
4452 6507 2.386661 ATGATCAGTTGGACCGACAC 57.613 50.000 14.58 3.54 0.00 3.67
4453 6508 1.044611 TGATCAGTTGGACCGACACA 58.955 50.000 14.58 5.92 0.00 3.72
4454 6509 1.414550 TGATCAGTTGGACCGACACAA 59.585 47.619 14.58 0.00 0.00 3.33
4455 6510 2.158885 TGATCAGTTGGACCGACACAAA 60.159 45.455 14.58 0.00 0.00 2.83
4456 6511 1.948104 TCAGTTGGACCGACACAAAG 58.052 50.000 14.58 0.00 0.00 2.77
4457 6512 1.483004 TCAGTTGGACCGACACAAAGA 59.517 47.619 14.58 1.45 0.00 2.52
4458 6513 2.104111 TCAGTTGGACCGACACAAAGAT 59.896 45.455 14.58 0.00 0.00 2.40
4459 6514 2.878406 CAGTTGGACCGACACAAAGATT 59.122 45.455 14.58 0.00 0.00 2.40
4460 6515 2.878406 AGTTGGACCGACACAAAGATTG 59.122 45.455 14.58 0.00 0.00 2.67
4461 6516 2.616842 GTTGGACCGACACAAAGATTGT 59.383 45.455 7.02 0.00 46.75 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.213906 CCAAACATTTTCCTGCAACCAATC 59.786 41.667 0.00 0.00 0.00 2.67
9 10 1.691434 GTCCCCAAACATTTTCCTGCA 59.309 47.619 0.00 0.00 0.00 4.41
41 42 4.862574 TCGACCATCTTTATGTTCAACTCG 59.137 41.667 0.00 0.00 0.00 4.18
62 63 1.284408 GATGCTCCTCGCTACCTCG 59.716 63.158 0.00 0.00 40.11 4.63
89 90 0.736325 CGCTTCCCGTGAACTTCGAT 60.736 55.000 0.00 0.00 0.00 3.59
125 126 4.077184 TCACCGTCCGGGCACATC 62.077 66.667 6.96 0.00 40.62 3.06
126 127 4.388499 GTCACCGTCCGGGCACAT 62.388 66.667 6.96 0.00 40.62 3.21
134 135 3.112709 GCTTGAGCGTCACCGTCC 61.113 66.667 0.00 0.00 36.15 4.79
146 147 1.274728 GTCTTCAGGAGCTCTGCTTGA 59.725 52.381 14.64 9.78 43.06 3.02
149 150 1.603236 CCGTCTTCAGGAGCTCTGCT 61.603 60.000 14.64 0.00 43.06 4.24
151 152 1.153667 GCCGTCTTCAGGAGCTCTG 60.154 63.158 14.64 10.04 44.68 3.35
152 153 2.705821 CGCCGTCTTCAGGAGCTCT 61.706 63.158 14.64 0.00 0.00 4.09
182 183 2.280524 TGCTCCACCACGAAACCG 60.281 61.111 0.00 0.00 0.00 4.44
221 222 0.676151 CCAGCTCCTCCTTTGTCAGC 60.676 60.000 0.00 0.00 0.00 4.26
244 245 3.198872 GGCTACTGGTGACTTGATAAGC 58.801 50.000 0.00 0.00 0.00 3.09
257 258 3.634397 TGAGATCCTTTTGGCTACTGG 57.366 47.619 0.00 0.00 40.12 4.00
313 314 6.450845 ACGTATCTAGACGAATCTAAGACG 57.549 41.667 10.62 0.09 45.82 4.18
320 321 6.543736 TGATGCATACGTATCTAGACGAATC 58.456 40.000 4.74 3.92 45.82 2.52
325 326 6.081049 GTGTCTGATGCATACGTATCTAGAC 58.919 44.000 4.74 13.94 39.67 2.59
326 327 5.107065 CGTGTCTGATGCATACGTATCTAGA 60.107 44.000 4.74 0.00 35.45 2.43
327 328 5.082723 CGTGTCTGATGCATACGTATCTAG 58.917 45.833 4.74 0.00 35.45 2.43
328 329 4.514066 ACGTGTCTGATGCATACGTATCTA 59.486 41.667 19.95 0.00 44.93 1.98
329 330 3.315470 ACGTGTCTGATGCATACGTATCT 59.685 43.478 19.95 0.00 44.93 1.98
330 331 3.629058 ACGTGTCTGATGCATACGTATC 58.371 45.455 19.95 0.00 44.93 2.24
331 332 3.710326 ACGTGTCTGATGCATACGTAT 57.290 42.857 19.95 1.14 44.93 3.06
332 333 3.497297 AACGTGTCTGATGCATACGTA 57.503 42.857 21.21 0.00 45.88 3.57
334 335 3.722555 AAAACGTGTCTGATGCATACG 57.277 42.857 15.49 15.49 40.30 3.06
335 336 5.120208 ACACTAAAACGTGTCTGATGCATAC 59.880 40.000 0.00 0.00 44.32 2.39
336 337 5.234752 ACACTAAAACGTGTCTGATGCATA 58.765 37.500 0.00 0.00 44.32 3.14
337 338 4.065088 ACACTAAAACGTGTCTGATGCAT 58.935 39.130 0.00 0.00 44.32 3.96
338 339 3.462982 ACACTAAAACGTGTCTGATGCA 58.537 40.909 0.00 0.00 44.32 3.96
347 348 2.741612 TGTACCCGACACTAAAACGTG 58.258 47.619 0.00 0.00 40.67 4.49
348 349 3.665745 ATGTACCCGACACTAAAACGT 57.334 42.857 0.00 0.00 42.17 3.99
349 350 4.211794 ACAAATGTACCCGACACTAAAACG 59.788 41.667 0.00 0.00 42.17 3.60
350 351 5.678132 ACAAATGTACCCGACACTAAAAC 57.322 39.130 0.00 0.00 42.17 2.43
351 352 7.388437 AGATACAAATGTACCCGACACTAAAA 58.612 34.615 0.00 0.00 42.17 1.52
352 353 6.938507 AGATACAAATGTACCCGACACTAAA 58.061 36.000 0.00 0.00 42.17 1.85
353 354 6.534475 AGATACAAATGTACCCGACACTAA 57.466 37.500 0.00 0.00 42.17 2.24
354 355 7.012704 GTCTAGATACAAATGTACCCGACACTA 59.987 40.741 0.00 0.00 42.17 2.74
355 356 5.889853 TCTAGATACAAATGTACCCGACACT 59.110 40.000 0.00 0.00 42.17 3.55
356 357 5.975939 GTCTAGATACAAATGTACCCGACAC 59.024 44.000 0.00 0.00 42.17 3.67
357 358 5.653330 TGTCTAGATACAAATGTACCCGACA 59.347 40.000 0.00 0.30 43.97 4.35
358 359 6.140303 TGTCTAGATACAAATGTACCCGAC 57.860 41.667 0.00 0.00 32.72 4.79
359 360 6.778834 TTGTCTAGATACAAATGTACCCGA 57.221 37.500 0.00 0.00 36.45 5.14
377 378 9.927668 CCCAAATATGTTGTTTTAGATTTGTCT 57.072 29.630 0.00 0.00 34.13 3.41
378 379 9.921637 TCCCAAATATGTTGTTTTAGATTTGTC 57.078 29.630 0.00 0.00 34.13 3.18
379 380 9.705290 GTCCCAAATATGTTGTTTTAGATTTGT 57.295 29.630 0.00 0.00 34.13 2.83
380 381 8.859156 CGTCCCAAATATGTTGTTTTAGATTTG 58.141 33.333 0.00 0.00 35.19 2.32
381 382 8.032451 CCGTCCCAAATATGTTGTTTTAGATTT 58.968 33.333 0.00 0.00 0.00 2.17
382 383 7.394923 TCCGTCCCAAATATGTTGTTTTAGATT 59.605 33.333 0.00 0.00 0.00 2.40
383 384 6.887545 TCCGTCCCAAATATGTTGTTTTAGAT 59.112 34.615 0.00 0.00 0.00 1.98
384 385 6.239396 TCCGTCCCAAATATGTTGTTTTAGA 58.761 36.000 0.00 0.00 0.00 2.10
385 386 6.404293 CCTCCGTCCCAAATATGTTGTTTTAG 60.404 42.308 0.00 0.00 0.00 1.85
386 387 5.416326 CCTCCGTCCCAAATATGTTGTTTTA 59.584 40.000 0.00 0.00 0.00 1.52
387 388 4.219725 CCTCCGTCCCAAATATGTTGTTTT 59.780 41.667 0.00 0.00 0.00 2.43
388 389 3.761752 CCTCCGTCCCAAATATGTTGTTT 59.238 43.478 0.00 0.00 0.00 2.83
389 390 3.245122 ACCTCCGTCCCAAATATGTTGTT 60.245 43.478 0.00 0.00 0.00 2.83
395 396 5.640158 TCAATTACCTCCGTCCCAAATAT 57.360 39.130 0.00 0.00 0.00 1.28
396 397 5.640158 ATCAATTACCTCCGTCCCAAATA 57.360 39.130 0.00 0.00 0.00 1.40
408 409 6.429385 GCTTGCTATGCTCTTATCAATTACCT 59.571 38.462 0.00 0.00 0.00 3.08
415 416 3.501062 GCATGCTTGCTATGCTCTTATCA 59.499 43.478 16.80 0.00 45.64 2.15
460 461 5.987347 ACTCGAACGAATAAGGAAAAAGTGA 59.013 36.000 0.00 0.00 0.00 3.41
463 466 6.462073 TGACTCGAACGAATAAGGAAAAAG 57.538 37.500 0.00 0.00 0.00 2.27
469 472 4.421058 TGTGATGACTCGAACGAATAAGG 58.579 43.478 0.00 0.00 0.00 2.69
476 479 2.159379 TGATCCTGTGATGACTCGAACG 60.159 50.000 0.00 0.00 0.00 3.95
538 695 4.638304 ACATCAGTGTTACACTTACACCC 58.362 43.478 16.06 0.00 42.59 4.61
595 752 5.939883 ACAATGAGATCATCGGTGAGAAAAA 59.060 36.000 3.97 0.00 37.87 1.94
602 759 3.790091 ACTGACAATGAGATCATCGGTG 58.210 45.455 0.00 0.00 35.10 4.94
639 796 2.686915 CCAGCAATGGAGGAACAAGATC 59.313 50.000 0.00 0.00 0.00 2.75
676 833 2.511145 GCTGAGCTGAAGCCGGAG 60.511 66.667 5.05 0.00 43.38 4.63
677 834 2.999648 AGCTGAGCTGAAGCCGGA 61.000 61.111 5.97 0.00 41.82 5.14
678 835 2.511145 GAGCTGAGCTGAAGCCGG 60.511 66.667 13.71 0.00 39.88 6.13
679 836 1.810441 CAGAGCTGAGCTGAAGCCG 60.810 63.158 13.71 1.05 39.88 5.52
680 837 2.107903 GCAGAGCTGAGCTGAAGCC 61.108 63.158 13.71 0.00 39.88 4.35
700 857 2.589540 CTGCCGGTGGGAGCATTA 59.410 61.111 1.90 0.00 38.56 1.90
727 884 2.125633 GGGTTCTTCTCCGGCGAC 60.126 66.667 9.30 0.00 0.00 5.19
729 886 0.676782 AAATGGGTTCTTCTCCGGCG 60.677 55.000 0.00 0.00 0.00 6.46
748 905 0.680618 TCTCCGGCGACACCTAAAAA 59.319 50.000 9.30 0.00 35.61 1.94
749 906 0.037975 GTCTCCGGCGACACCTAAAA 60.038 55.000 19.57 0.00 35.61 1.52
750 907 0.896940 AGTCTCCGGCGACACCTAAA 60.897 55.000 25.55 0.00 36.38 1.85
751 908 0.035152 TAGTCTCCGGCGACACCTAA 60.035 55.000 25.55 3.72 36.38 2.69
752 909 0.035152 TTAGTCTCCGGCGACACCTA 60.035 55.000 25.55 7.58 36.38 3.08
754 911 1.153881 GTTAGTCTCCGGCGACACC 60.154 63.158 25.55 9.52 36.38 4.16
755 912 1.153881 GGTTAGTCTCCGGCGACAC 60.154 63.158 25.55 15.66 36.38 3.67
756 913 2.693762 CGGTTAGTCTCCGGCGACA 61.694 63.158 25.55 9.66 43.68 4.35
758 915 2.046023 TCGGTTAGTCTCCGGCGA 60.046 61.111 9.30 0.00 46.82 5.54
759 916 2.408022 CTCGGTTAGTCTCCGGCG 59.592 66.667 0.00 0.00 46.82 6.46
760 917 2.806237 CCTCGGTTAGTCTCCGGC 59.194 66.667 0.00 0.00 46.82 6.13
761 918 2.806237 GCCTCGGTTAGTCTCCGG 59.194 66.667 0.00 0.00 46.82 5.14
763 920 2.806237 CCGCCTCGGTTAGTCTCC 59.194 66.667 0.00 0.00 42.73 3.71
780 2603 1.019278 TCCAGCGAAATGAACGAGGC 61.019 55.000 0.00 0.00 0.00 4.70
783 2606 1.019278 GCCTCCAGCGAAATGAACGA 61.019 55.000 0.00 0.00 0.00 3.85
784 2607 1.425428 GCCTCCAGCGAAATGAACG 59.575 57.895 0.00 0.00 0.00 3.95
786 2609 1.378514 GGGCCTCCAGCGAAATGAA 60.379 57.895 0.84 0.00 45.17 2.57
787 2610 2.272146 GGGCCTCCAGCGAAATGA 59.728 61.111 0.84 0.00 45.17 2.57
789 2612 4.489771 CCGGGCCTCCAGCGAAAT 62.490 66.667 0.84 0.00 45.17 2.17
853 2688 1.591327 GTGGGCTTTGGTTTGTGCG 60.591 57.895 0.00 0.00 0.00 5.34
863 2699 3.553095 GAGGAGCGTGGTGGGCTTT 62.553 63.158 0.00 0.00 41.72 3.51
878 2714 2.232298 GAAGACGCTGGAGTGGGAGG 62.232 65.000 0.00 0.00 0.00 4.30
1166 3002 0.800631 GGTCTTTCTTTTACCGGCGG 59.199 55.000 27.06 27.06 0.00 6.13
1197 3034 2.289257 GGTACAACAGTAAAGAGGGCGT 60.289 50.000 0.00 0.00 0.00 5.68
1202 3039 9.930693 AAATCTTCTAGGTACAACAGTAAAGAG 57.069 33.333 0.00 0.00 0.00 2.85
1206 3043 9.706691 CTGAAAATCTTCTAGGTACAACAGTAA 57.293 33.333 0.00 0.00 32.33 2.24
1207 3044 7.817962 GCTGAAAATCTTCTAGGTACAACAGTA 59.182 37.037 0.00 0.00 32.33 2.74
1208 3045 6.651225 GCTGAAAATCTTCTAGGTACAACAGT 59.349 38.462 0.00 0.00 32.33 3.55
1209 3046 6.876257 AGCTGAAAATCTTCTAGGTACAACAG 59.124 38.462 0.00 0.00 32.33 3.16
1212 3049 8.812972 TCTAAGCTGAAAATCTTCTAGGTACAA 58.187 33.333 0.00 0.00 32.33 2.41
1256 3093 9.479549 AGTAGTAGAAGACTAGAGTAGTACTGT 57.520 37.037 7.76 6.34 41.47 3.55
1263 3100 9.077885 GCTACCTAGTAGTAGAAGACTAGAGTA 57.922 40.741 6.14 9.20 45.38 2.59
1264 3101 7.564660 TGCTACCTAGTAGTAGAAGACTAGAGT 59.435 40.741 6.14 8.68 45.38 3.24
1265 3102 7.954835 TGCTACCTAGTAGTAGAAGACTAGAG 58.045 42.308 6.14 3.02 45.38 2.43
1266 3103 7.911130 TGCTACCTAGTAGTAGAAGACTAGA 57.089 40.000 6.14 0.00 45.38 2.43
1267 3104 9.211485 GAATGCTACCTAGTAGTAGAAGACTAG 57.789 40.741 6.14 2.68 41.47 2.57
1268 3105 7.871973 CGAATGCTACCTAGTAGTAGAAGACTA 59.128 40.741 6.14 0.00 41.98 2.59
1269 3106 6.707161 CGAATGCTACCTAGTAGTAGAAGACT 59.293 42.308 6.14 0.00 41.98 3.24
1270 3107 6.705381 TCGAATGCTACCTAGTAGTAGAAGAC 59.295 42.308 6.14 1.83 41.98 3.01
1271 3108 6.824553 TCGAATGCTACCTAGTAGTAGAAGA 58.175 40.000 6.14 0.00 41.98 2.87
1272 3109 7.604927 AGATCGAATGCTACCTAGTAGTAGAAG 59.395 40.741 6.14 4.68 41.98 2.85
1273 3110 7.451732 AGATCGAATGCTACCTAGTAGTAGAA 58.548 38.462 6.14 0.76 41.98 2.10
1274 3111 7.006865 AGATCGAATGCTACCTAGTAGTAGA 57.993 40.000 6.14 0.00 41.98 2.59
1275 3112 7.064134 CAGAGATCGAATGCTACCTAGTAGTAG 59.936 44.444 3.87 0.00 42.25 2.57
1276 3113 6.874664 CAGAGATCGAATGCTACCTAGTAGTA 59.125 42.308 3.87 0.00 38.30 1.82
1277 3114 5.703592 CAGAGATCGAATGCTACCTAGTAGT 59.296 44.000 3.87 0.00 38.30 2.73
1278 3115 5.123186 CCAGAGATCGAATGCTACCTAGTAG 59.877 48.000 0.00 0.00 38.97 2.57
1279 3116 5.004448 CCAGAGATCGAATGCTACCTAGTA 58.996 45.833 0.00 0.00 0.00 1.82
1280 3117 3.823873 CCAGAGATCGAATGCTACCTAGT 59.176 47.826 0.00 0.00 0.00 2.57
1281 3118 4.075682 TCCAGAGATCGAATGCTACCTAG 58.924 47.826 0.00 0.00 0.00 3.02
1282 3119 4.075682 CTCCAGAGATCGAATGCTACCTA 58.924 47.826 0.00 0.00 0.00 3.08
1283 3120 2.890311 CTCCAGAGATCGAATGCTACCT 59.110 50.000 0.00 0.00 0.00 3.08
1290 3127 2.432510 GGTTCCACTCCAGAGATCGAAT 59.567 50.000 0.70 0.00 0.00 3.34
1293 3130 1.407258 GAGGTTCCACTCCAGAGATCG 59.593 57.143 0.70 0.00 0.00 3.69
1297 3134 1.216710 GCGAGGTTCCACTCCAGAG 59.783 63.158 0.00 0.00 33.93 3.35
1310 3147 1.271102 GGGAGTCTAATAGCAGCGAGG 59.729 57.143 0.00 0.00 0.00 4.63
1311 3148 1.957177 TGGGAGTCTAATAGCAGCGAG 59.043 52.381 0.00 0.00 0.00 5.03
1312 3149 1.681793 GTGGGAGTCTAATAGCAGCGA 59.318 52.381 0.00 0.00 0.00 4.93
1313 3150 1.683917 AGTGGGAGTCTAATAGCAGCG 59.316 52.381 0.00 0.00 0.00 5.18
1314 3151 3.386402 AGAAGTGGGAGTCTAATAGCAGC 59.614 47.826 0.00 0.00 0.00 5.25
1315 3152 4.646945 TCAGAAGTGGGAGTCTAATAGCAG 59.353 45.833 0.00 0.00 0.00 4.24
1316 3153 4.610333 TCAGAAGTGGGAGTCTAATAGCA 58.390 43.478 0.00 0.00 0.00 3.49
1317 3154 5.128008 ACTTCAGAAGTGGGAGTCTAATAGC 59.872 44.000 15.41 0.00 41.01 2.97
1318 3155 6.783708 ACTTCAGAAGTGGGAGTCTAATAG 57.216 41.667 15.41 0.00 41.01 1.73
1353 3190 4.276431 AGAACTTCCGTCGCCAAATTAAAA 59.724 37.500 0.00 0.00 0.00 1.52
1354 3191 3.816523 AGAACTTCCGTCGCCAAATTAAA 59.183 39.130 0.00 0.00 0.00 1.52
1357 3194 1.892209 AGAACTTCCGTCGCCAAATT 58.108 45.000 0.00 0.00 0.00 1.82
1358 3195 2.028385 ACTAGAACTTCCGTCGCCAAAT 60.028 45.455 0.00 0.00 0.00 2.32
1366 3203 5.769162 AGTACAGAAAGACTAGAACTTCCGT 59.231 40.000 0.00 3.43 0.00 4.69
1373 3210 8.803235 TCAATAAGCAGTACAGAAAGACTAGAA 58.197 33.333 0.00 0.00 0.00 2.10
1378 3215 6.868864 TCAGTCAATAAGCAGTACAGAAAGAC 59.131 38.462 0.00 0.00 0.00 3.01
1389 3226 8.752766 AAACAATCATTTCAGTCAATAAGCAG 57.247 30.769 0.00 0.00 0.00 4.24
1415 3252 7.998383 TCATACCCAATAGTTCAACATATGCTT 59.002 33.333 1.58 0.00 0.00 3.91
1416 3253 7.517320 TCATACCCAATAGTTCAACATATGCT 58.483 34.615 1.58 0.00 0.00 3.79
1431 3268 5.200483 CCATGTAACCAGTTCATACCCAAT 58.800 41.667 0.00 0.00 0.00 3.16
1432 3269 4.043561 ACCATGTAACCAGTTCATACCCAA 59.956 41.667 0.00 0.00 0.00 4.12
1433 3270 3.589735 ACCATGTAACCAGTTCATACCCA 59.410 43.478 0.00 0.00 0.00 4.51
1434 3271 4.230745 ACCATGTAACCAGTTCATACCC 57.769 45.455 0.00 0.00 0.00 3.69
1435 3272 5.621329 GCAAACCATGTAACCAGTTCATACC 60.621 44.000 0.00 0.00 0.00 2.73
1436 3273 5.048364 TGCAAACCATGTAACCAGTTCATAC 60.048 40.000 0.00 0.00 0.00 2.39
1437 3274 5.048364 GTGCAAACCATGTAACCAGTTCATA 60.048 40.000 0.00 0.00 0.00 2.15
1438 3275 3.894427 TGCAAACCATGTAACCAGTTCAT 59.106 39.130 0.00 0.00 0.00 2.57
1439 3276 3.067461 GTGCAAACCATGTAACCAGTTCA 59.933 43.478 0.00 0.00 0.00 3.18
1440 3277 3.638484 GTGCAAACCATGTAACCAGTTC 58.362 45.455 0.00 0.00 0.00 3.01
1441 3278 2.034053 CGTGCAAACCATGTAACCAGTT 59.966 45.455 0.00 0.00 0.00 3.16
1442 3279 1.606668 CGTGCAAACCATGTAACCAGT 59.393 47.619 0.00 0.00 0.00 4.00
1443 3280 1.068610 CCGTGCAAACCATGTAACCAG 60.069 52.381 0.00 0.00 0.00 4.00
1444 3281 0.955178 CCGTGCAAACCATGTAACCA 59.045 50.000 0.00 0.00 0.00 3.67
1458 3295 3.435327 TGATGTTCTCATAACAACCGTGC 59.565 43.478 0.00 0.00 34.06 5.34
1461 3298 3.935203 AGCTGATGTTCTCATAACAACCG 59.065 43.478 0.00 0.00 34.06 4.44
1462 3299 6.109359 AGTAGCTGATGTTCTCATAACAACC 58.891 40.000 0.00 0.00 34.06 3.77
1487 3325 7.295201 GTTGAAAATTGTGCTATTCGACTGTA 58.705 34.615 0.00 0.00 34.68 2.74
1489 3327 5.569059 GGTTGAAAATTGTGCTATTCGACTG 59.431 40.000 5.91 0.00 36.73 3.51
1490 3328 5.240623 TGGTTGAAAATTGTGCTATTCGACT 59.759 36.000 5.91 0.00 36.73 4.18
1491 3329 5.457140 TGGTTGAAAATTGTGCTATTCGAC 58.543 37.500 0.00 0.00 36.08 4.20
1493 3331 5.698832 TCTGGTTGAAAATTGTGCTATTCG 58.301 37.500 0.00 0.00 0.00 3.34
1494 3332 6.913170 TCTCTGGTTGAAAATTGTGCTATTC 58.087 36.000 0.00 0.00 0.00 1.75
1495 3333 6.899393 TCTCTGGTTGAAAATTGTGCTATT 57.101 33.333 0.00 0.00 0.00 1.73
1497 3335 6.680810 CATTCTCTGGTTGAAAATTGTGCTA 58.319 36.000 0.00 0.00 0.00 3.49
1498 3336 5.535333 CATTCTCTGGTTGAAAATTGTGCT 58.465 37.500 0.00 0.00 0.00 4.40
1499 3337 4.151157 GCATTCTCTGGTTGAAAATTGTGC 59.849 41.667 0.00 0.00 0.00 4.57
1500 3338 5.291178 TGCATTCTCTGGTTGAAAATTGTG 58.709 37.500 0.00 0.00 0.00 3.33
1502 3340 6.647481 TGAATGCATTCTCTGGTTGAAAATTG 59.353 34.615 33.23 0.00 37.67 2.32
1503 3341 6.761312 TGAATGCATTCTCTGGTTGAAAATT 58.239 32.000 33.23 0.00 37.67 1.82
1505 3343 5.787953 TGAATGCATTCTCTGGTTGAAAA 57.212 34.783 33.23 11.44 37.67 2.29
1509 3347 5.450137 GGAGATTGAATGCATTCTCTGGTTG 60.450 44.000 33.23 0.00 44.81 3.77
1510 3348 4.643784 GGAGATTGAATGCATTCTCTGGTT 59.356 41.667 33.23 17.56 44.81 3.67
1511 3349 4.205587 GGAGATTGAATGCATTCTCTGGT 58.794 43.478 33.23 17.89 44.81 4.00
1512 3350 4.036498 GTGGAGATTGAATGCATTCTCTGG 59.964 45.833 33.23 0.00 44.81 3.86
1513 3351 4.036498 GGTGGAGATTGAATGCATTCTCTG 59.964 45.833 33.23 0.00 44.81 3.35
1514 3352 4.079901 AGGTGGAGATTGAATGCATTCTCT 60.080 41.667 33.23 28.36 44.81 3.10
1515 3353 4.036498 CAGGTGGAGATTGAATGCATTCTC 59.964 45.833 33.23 24.89 44.75 2.87
1516 3354 3.952323 CAGGTGGAGATTGAATGCATTCT 59.048 43.478 33.23 18.96 37.42 2.40
1517 3355 3.490419 GCAGGTGGAGATTGAATGCATTC 60.490 47.826 28.83 28.83 37.31 2.67
1518 3356 2.429610 GCAGGTGGAGATTGAATGCATT 59.570 45.455 12.83 12.83 32.58 3.56
1519 3357 2.029623 GCAGGTGGAGATTGAATGCAT 58.970 47.619 0.00 0.00 32.58 3.96
1520 3358 1.272037 TGCAGGTGGAGATTGAATGCA 60.272 47.619 0.00 0.00 39.67 3.96
1521 3359 1.466856 TGCAGGTGGAGATTGAATGC 58.533 50.000 0.00 0.00 0.00 3.56
1522 3360 3.284617 TCATGCAGGTGGAGATTGAATG 58.715 45.455 0.00 0.00 30.52 2.67
1523 3361 3.657398 TCATGCAGGTGGAGATTGAAT 57.343 42.857 0.00 0.00 0.00 2.57
1524 3362 3.284617 CATCATGCAGGTGGAGATTGAA 58.715 45.455 0.00 0.00 0.00 2.69
1527 3365 2.651455 CACATCATGCAGGTGGAGATT 58.349 47.619 0.00 0.00 0.00 2.40
1539 3377 6.480981 AGAAAGAAAACAAAAGGCACATCATG 59.519 34.615 0.00 0.00 0.00 3.07
1542 3380 6.908870 AAGAAAGAAAACAAAAGGCACATC 57.091 33.333 0.00 0.00 0.00 3.06
1546 3384 7.158021 TCAAGAAAGAAAGAAAACAAAAGGCA 58.842 30.769 0.00 0.00 0.00 4.75
1547 3385 7.595311 TCAAGAAAGAAAGAAAACAAAAGGC 57.405 32.000 0.00 0.00 0.00 4.35
1589 3431 7.015289 CACACAGAGACATAAAATACGTTTGG 58.985 38.462 0.00 0.00 0.00 3.28
1590 3432 6.519761 GCACACAGAGACATAAAATACGTTTG 59.480 38.462 0.00 0.00 0.00 2.93
1591 3433 6.203915 TGCACACAGAGACATAAAATACGTTT 59.796 34.615 0.00 0.00 0.00 3.60
1602 3444 1.607509 GCAGAGTGCACACAGAGACAT 60.608 52.381 21.04 0.00 44.26 3.06
1621 3463 5.954335 ACTAAAATTACAGCACCAGAATGC 58.046 37.500 0.00 0.00 46.50 3.56
1623 3465 9.073475 TGTTAACTAAAATTACAGCACCAGAAT 57.927 29.630 7.22 0.00 0.00 2.40
1624 3466 8.453238 TGTTAACTAAAATTACAGCACCAGAA 57.547 30.769 7.22 0.00 0.00 3.02
1625 3467 7.934665 TCTGTTAACTAAAATTACAGCACCAGA 59.065 33.333 7.22 0.00 0.00 3.86
1626 3468 8.094798 TCTGTTAACTAAAATTACAGCACCAG 57.905 34.615 7.22 0.00 0.00 4.00
1663 3508 6.240527 GGGACAGAGGGAGTATAATACTAGGT 60.241 46.154 0.00 0.00 39.59 3.08
1714 3559 9.872757 GTTCACGAATTAAGTTCAACTTCATAA 57.127 29.630 5.92 0.00 39.51 1.90
1715 3560 9.268268 AGTTCACGAATTAAGTTCAACTTCATA 57.732 29.630 5.92 0.00 39.51 2.15
1716 3561 8.154649 AGTTCACGAATTAAGTTCAACTTCAT 57.845 30.769 5.92 0.00 39.51 2.57
1717 3562 7.494625 AGAGTTCACGAATTAAGTTCAACTTCA 59.505 33.333 5.92 0.00 39.51 3.02
1718 3563 7.852516 AGAGTTCACGAATTAAGTTCAACTTC 58.147 34.615 5.92 0.00 39.51 3.01
1719 3564 7.787725 AGAGTTCACGAATTAAGTTCAACTT 57.212 32.000 8.15 8.15 41.97 2.66
1720 3565 8.142551 AGTAGAGTTCACGAATTAAGTTCAACT 58.857 33.333 0.00 0.00 36.60 3.16
1724 3569 8.975439 TGAAAGTAGAGTTCACGAATTAAGTTC 58.025 33.333 0.00 0.00 30.08 3.01
1757 3603 6.589139 GCCAAGAAAGGAGAAGAAATGAATTG 59.411 38.462 0.00 0.00 0.00 2.32
1760 3606 5.139727 TGCCAAGAAAGGAGAAGAAATGAA 58.860 37.500 0.00 0.00 0.00 2.57
1761 3607 4.728772 TGCCAAGAAAGGAGAAGAAATGA 58.271 39.130 0.00 0.00 0.00 2.57
1765 3611 4.647564 ATCTGCCAAGAAAGGAGAAGAA 57.352 40.909 0.00 0.00 35.59 2.52
1773 3619 6.544931 TGGATTGAGATAATCTGCCAAGAAAG 59.455 38.462 0.00 0.00 35.59 2.62
1795 3642 1.182667 CGTACTGGTCATGTCCTGGA 58.817 55.000 17.54 8.50 0.00 3.86
1812 3659 0.952010 GTTTGGATGGCGGTACACGT 60.952 55.000 0.00 0.00 46.52 4.49
1822 3669 1.834188 AAGCTTACCCGTTTGGATGG 58.166 50.000 0.00 0.00 37.49 3.51
1852 3699 9.878599 CGTACTGTTTAAGTTCTCAAATGAAAT 57.121 29.630 0.00 0.00 40.56 2.17
1853 3700 7.853929 GCGTACTGTTTAAGTTCTCAAATGAAA 59.146 33.333 0.00 0.00 40.56 2.69
1856 3703 6.888430 AGCGTACTGTTTAAGTTCTCAAATG 58.112 36.000 0.00 0.00 40.56 2.32
1857 3704 7.492352 AAGCGTACTGTTTAAGTTCTCAAAT 57.508 32.000 0.00 0.00 40.56 2.32
1858 3705 6.913873 AAGCGTACTGTTTAAGTTCTCAAA 57.086 33.333 0.00 0.00 40.56 2.69
1870 3717 2.870411 GACCTGTTGAAAGCGTACTGTT 59.130 45.455 0.00 0.00 0.00 3.16
1871 3718 2.480845 GACCTGTTGAAAGCGTACTGT 58.519 47.619 0.00 0.00 0.00 3.55
1872 3719 1.798813 GGACCTGTTGAAAGCGTACTG 59.201 52.381 0.00 0.00 0.00 2.74
1873 3720 1.414919 TGGACCTGTTGAAAGCGTACT 59.585 47.619 0.00 0.00 0.00 2.73
1874 3721 1.873698 TGGACCTGTTGAAAGCGTAC 58.126 50.000 0.00 0.00 0.00 3.67
1875 3722 2.623878 TTGGACCTGTTGAAAGCGTA 57.376 45.000 0.00 0.00 0.00 4.42
1876 3723 1.757682 TTTGGACCTGTTGAAAGCGT 58.242 45.000 0.00 0.00 0.00 5.07
1877 3724 3.052036 CAATTTGGACCTGTTGAAAGCG 58.948 45.455 0.00 0.00 0.00 4.68
1878 3725 3.392882 CCAATTTGGACCTGTTGAAAGC 58.607 45.455 10.03 0.00 40.96 3.51
1879 3726 3.070015 AGCCAATTTGGACCTGTTGAAAG 59.930 43.478 19.76 0.00 40.96 2.62
1880 3727 3.037549 AGCCAATTTGGACCTGTTGAAA 58.962 40.909 19.76 0.00 40.96 2.69
1881 3728 2.676748 AGCCAATTTGGACCTGTTGAA 58.323 42.857 19.76 0.00 40.96 2.69
1882 3729 2.380064 AGCCAATTTGGACCTGTTGA 57.620 45.000 19.76 0.00 40.96 3.18
1883 3730 3.070015 AGAAAGCCAATTTGGACCTGTTG 59.930 43.478 19.76 0.00 40.96 3.33
1892 3739 5.107133 GGTGATCATGAGAAAGCCAATTTG 58.893 41.667 0.00 0.00 0.00 2.32
1912 3759 2.099098 GGAAGACCATTTATTGCCGGTG 59.901 50.000 1.90 0.00 35.97 4.94
1914 3761 1.333619 CGGAAGACCATTTATTGCCGG 59.666 52.381 0.00 0.00 34.29 6.13
1917 3764 3.013921 TCACCGGAAGACCATTTATTGC 58.986 45.455 9.46 0.00 35.59 3.56
1954 3806 7.773690 GCCTAGAAATAACCCAGTTTCAGATAA 59.226 37.037 0.00 0.00 36.92 1.75
1963 3815 5.278061 TCTACTGCCTAGAAATAACCCAGT 58.722 41.667 0.00 0.00 36.24 4.00
2024 3877 4.635223 TCTGTCCAAGACAAAGATCACTG 58.365 43.478 0.00 0.00 42.26 3.66
2036 3889 6.209192 ACATTAAACAATGCATCTGTCCAAGA 59.791 34.615 0.00 0.00 34.89 3.02
2062 3916 8.792830 AGAGTTGCATTAGAAATAAGTAAGCA 57.207 30.769 0.00 0.00 0.00 3.91
2132 3987 9.803315 GAATAAATTTCCTTCCTAATCACCAAC 57.197 33.333 0.00 0.00 0.00 3.77
2181 4036 2.756207 ACCACGCACAACCTAAAGTTTT 59.244 40.909 0.00 0.00 36.18 2.43
2213 4068 0.467844 TTCAGTGCAACATGGGCTGT 60.468 50.000 12.08 0.00 41.43 4.40
2324 4179 5.668558 AACAAAGAACATACGTCAACTCC 57.331 39.130 0.00 0.00 0.00 3.85
2378 4236 2.677836 TGCATTCTGTAATCGGAAGCAC 59.322 45.455 0.00 0.00 41.47 4.40
2386 4244 5.634439 TGCAAATGTTGTGCATTCTGTAATC 59.366 36.000 0.00 0.00 46.76 1.75
2546 4404 1.156736 CCCTTTCACGCAACACCTAG 58.843 55.000 0.00 0.00 0.00 3.02
2598 4456 2.548480 GGTATTAAGCAGATCGGGTTGC 59.452 50.000 18.70 8.43 40.57 4.17
2695 4553 0.899019 TAGGCGTCACCATTGCTACA 59.101 50.000 0.00 0.00 43.14 2.74
2821 4839 7.639945 AGAAAAACCAACTTAAACATCTCTCG 58.360 34.615 0.00 0.00 0.00 4.04
2838 4856 7.062956 CCAACAGTGAGTTTACAAAGAAAAACC 59.937 37.037 0.00 0.00 38.74 3.27
3011 5032 4.724399 TGCTTCAACAGAGGTAATGGAAA 58.276 39.130 0.00 0.00 0.00 3.13
3083 5104 5.531634 TCAAAATGTTGCTTGAATCCAGAC 58.468 37.500 0.00 0.00 34.50 3.51
3085 5106 6.425721 ACAATCAAAATGTTGCTTGAATCCAG 59.574 34.615 17.08 0.00 41.36 3.86
3095 5125 2.492012 TGGGCACAATCAAAATGTTGC 58.508 42.857 0.00 0.00 34.50 4.17
3156 5186 9.354673 ACTAATGAAAAATCAAGTCTCTTTCCA 57.645 29.630 0.00 0.00 0.00 3.53
3306 5342 6.928348 AACCATATACCGGTCAGAATATGA 57.072 37.500 26.35 3.79 34.99 2.15
3479 5515 7.338449 TGAAAGCTAAAGGGTGTAACATTATCC 59.662 37.037 0.00 0.00 39.98 2.59
3498 5534 2.771089 TCATCGCTGTCTTTGAAAGCT 58.229 42.857 0.00 0.00 40.49 3.74
3725 5767 0.106708 GTGCGAGGATCAGGCCAATA 59.893 55.000 5.01 0.00 33.17 1.90
3803 5851 4.183865 CAAGAGACTTCAATATCACGCCA 58.816 43.478 0.00 0.00 0.00 5.69
3819 5867 1.717032 ACTGTGGCCACTACAAGAGA 58.283 50.000 34.75 12.61 0.00 3.10
3936 5984 8.648557 TCTCTATGAACTTCAAATGATTACGG 57.351 34.615 0.00 0.00 0.00 4.02
3962 6010 5.934625 CAGTAAAGGAGTGAAGCACATAAGT 59.065 40.000 0.00 0.00 36.74 2.24
4070 6124 3.153919 TCCCAATTCCCGACAGAAAAAG 58.846 45.455 0.00 0.00 0.00 2.27
4108 6162 9.762933 TTCTTTATTTTGTTGCAAAGATAAGCT 57.237 25.926 0.00 0.00 37.00 3.74
4120 6174 8.285776 AGCGAATGAACTTCTTTATTTTGTTG 57.714 30.769 0.00 0.00 0.00 3.33
4132 6186 9.262358 AGGTAGAATTATAAGCGAATGAACTTC 57.738 33.333 0.00 0.00 0.00 3.01
4137 6191 7.062749 ACCAGGTAGAATTATAAGCGAATGA 57.937 36.000 0.00 0.00 0.00 2.57
4143 6197 7.988028 AGTCAGAAACCAGGTAGAATTATAAGC 59.012 37.037 0.00 0.00 0.00 3.09
4163 6217 4.753186 AGGGAAGAAGAAAGGTAGTCAGA 58.247 43.478 0.00 0.00 0.00 3.27
4183 6237 7.663493 AGAAGAAACATTTAGGAGAACAGAAGG 59.337 37.037 0.00 0.00 0.00 3.46
4198 6252 8.565896 TTCATAGCATGTGTAGAAGAAACATT 57.434 30.769 0.00 0.00 32.27 2.71
4208 6262 9.049523 AGTATTGTGATTTCATAGCATGTGTAG 57.950 33.333 0.00 0.00 0.00 2.74
4238 6292 1.696063 ATGTGCTGGCAGTTGTCTTT 58.304 45.000 17.16 0.00 0.00 2.52
4248 6302 3.019564 AGACCATAGAAAATGTGCTGGC 58.980 45.455 0.00 0.00 0.00 4.85
4250 6304 7.558161 TTGATAGACCATAGAAAATGTGCTG 57.442 36.000 0.00 0.00 0.00 4.41
4258 6312 9.077885 AGCTTTTGTTTTGATAGACCATAGAAA 57.922 29.630 0.00 0.00 0.00 2.52
4263 6317 6.012745 AGGAGCTTTTGTTTTGATAGACCAT 58.987 36.000 0.00 0.00 0.00 3.55
4265 6319 5.106118 GGAGGAGCTTTTGTTTTGATAGACC 60.106 44.000 0.00 0.00 0.00 3.85
4273 6327 5.876651 AAATCTGGAGGAGCTTTTGTTTT 57.123 34.783 0.00 0.00 0.00 2.43
4286 6340 4.074970 ACCTTGTGTGCTTAAATCTGGAG 58.925 43.478 0.00 0.00 0.00 3.86
4287 6341 4.098914 ACCTTGTGTGCTTAAATCTGGA 57.901 40.909 0.00 0.00 0.00 3.86
4301 6355 7.672983 ACACTAATCTAATGTGAACCTTGTG 57.327 36.000 0.00 0.00 35.83 3.33
4321 6375 6.465084 GGTTGTTCCTCTCAAATAGTACACT 58.535 40.000 0.00 0.00 0.00 3.55
4322 6376 5.642491 GGGTTGTTCCTCTCAAATAGTACAC 59.358 44.000 0.00 0.00 36.25 2.90
4332 6386 2.507886 TGTTTCAGGGTTGTTCCTCTCA 59.492 45.455 0.00 0.00 34.31 3.27
4333 6387 2.879026 GTGTTTCAGGGTTGTTCCTCTC 59.121 50.000 0.00 0.00 34.31 3.20
4353 6407 5.089970 TCATGAATCCACTTTCATCGAGT 57.910 39.130 0.00 0.00 42.90 4.18
4355 6409 5.491070 AGTTCATGAATCCACTTTCATCGA 58.509 37.500 12.12 0.00 42.90 3.59
4356 6410 5.808042 AGTTCATGAATCCACTTTCATCG 57.192 39.130 12.12 0.00 42.90 3.84
4377 6432 4.448732 GGTTGAAGCATTGCCTTGTTTAAG 59.551 41.667 4.70 0.00 0.00 1.85
4413 6468 4.641094 TCATAATCACAGATGTGCATTGCA 59.359 37.500 7.38 7.38 45.25 4.08
4437 6492 1.483004 TCTTTGTGTCGGTCCAACTGA 59.517 47.619 0.00 0.00 0.00 3.41
4438 6493 1.948104 TCTTTGTGTCGGTCCAACTG 58.052 50.000 0.00 0.00 0.00 3.16
4439 6494 2.878406 CAATCTTTGTGTCGGTCCAACT 59.122 45.455 0.00 0.00 0.00 3.16
4440 6495 2.616842 ACAATCTTTGTGTCGGTCCAAC 59.383 45.455 0.00 0.00 43.48 3.77
4441 6496 2.925724 ACAATCTTTGTGTCGGTCCAA 58.074 42.857 0.00 0.00 43.48 3.53
4442 6497 2.631160 ACAATCTTTGTGTCGGTCCA 57.369 45.000 0.00 0.00 43.48 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.