Multiple sequence alignment - TraesCS6D01G069600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G069600 chr6D 100.000 3798 0 0 1 3798 34971720 34975517 0.000000e+00 7014.0
1 TraesCS6D01G069600 chr6D 94.624 558 29 1 228 784 47269890 47270447 0.000000e+00 863.0
2 TraesCS6D01G069600 chr6A 90.302 1093 91 10 1776 2858 39143856 39144943 0.000000e+00 1417.0
3 TraesCS6D01G069600 chr6A 90.043 462 39 7 3330 3788 39145322 39145779 3.270000e-165 592.0
4 TraesCS6D01G069600 chr6A 89.899 396 20 8 829 1219 39143098 39143478 3.410000e-135 492.0
5 TraesCS6D01G069600 chr6A 90.536 317 20 6 2925 3236 39144947 39145258 9.820000e-111 411.0
6 TraesCS6D01G069600 chr6A 88.115 244 22 4 1354 1590 39143480 39143723 2.230000e-72 283.0
7 TraesCS6D01G069600 chr6B 90.570 1018 75 10 1765 2768 72179703 72180713 0.000000e+00 1328.0
8 TraesCS6D01G069600 chr6B 87.778 810 52 18 800 1591 72178805 72179585 0.000000e+00 904.0
9 TraesCS6D01G069600 chr6B 87.874 602 54 13 980 1565 708551009 708551607 0.000000e+00 689.0
10 TraesCS6D01G069600 chr6B 89.301 458 36 9 3327 3782 72182964 72183410 2.560000e-156 562.0
11 TraesCS6D01G069600 chr6B 88.268 179 16 2 3055 3233 72181031 72181204 3.840000e-50 209.0
12 TraesCS6D01G069600 chr6B 87.387 111 9 4 2951 3059 72180773 72180880 5.150000e-24 122.0
13 TraesCS6D01G069600 chrUn 96.763 556 16 2 229 783 115109769 115110323 0.000000e+00 926.0
14 TraesCS6D01G069600 chr3D 95.878 558 22 1 229 785 63764099 63763542 0.000000e+00 902.0
15 TraesCS6D01G069600 chr3D 92.157 51 4 0 2899 2949 170965300 170965250 5.260000e-09 73.1
16 TraesCS6D01G069600 chr1D 95.324 556 25 1 229 783 250741386 250740831 0.000000e+00 881.0
17 TraesCS6D01G069600 chr1D 92.500 40 2 1 2899 2938 406671275 406671313 5.300000e-04 56.5
18 TraesCS6D01G069600 chr4D 94.671 563 28 2 224 784 63077380 63076818 0.000000e+00 872.0
19 TraesCS6D01G069600 chr4D 95.135 555 23 2 228 782 453054577 453054027 0.000000e+00 872.0
20 TraesCS6D01G069600 chr5B 94.964 556 26 2 229 783 318172800 318173354 0.000000e+00 870.0
21 TraesCS6D01G069600 chr5B 89.617 366 26 7 980 1334 416466917 416466553 4.470000e-124 455.0
22 TraesCS6D01G069600 chr5B 91.223 319 19 4 1024 1334 421519291 421518974 3.510000e-115 425.0
23 TraesCS6D01G069600 chr5B 97.345 113 3 0 1423 1535 416466543 416466431 3.870000e-45 193.0
24 TraesCS6D01G069600 chr5B 91.818 110 9 0 1426 1535 421518961 421518852 1.830000e-33 154.0
25 TraesCS6D01G069600 chr5D 94.624 558 29 1 229 786 397029805 397030361 0.000000e+00 863.0
26 TraesCS6D01G069600 chr1B 94.604 556 29 1 229 783 305284871 305284316 0.000000e+00 859.0
27 TraesCS6D01G069600 chr1B 88.500 600 52 11 980 1563 40485497 40486095 0.000000e+00 710.0
28 TraesCS6D01G069600 chr1B 87.719 57 5 2 2899 2955 546856279 546856225 8.810000e-07 65.8
29 TraesCS6D01G069600 chr1B 87.719 57 5 2 2899 2955 546963331 546963277 8.810000e-07 65.8
30 TraesCS6D01G069600 chr2A 89.130 46 4 1 2899 2944 85295795 85295839 5.300000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G069600 chr6D 34971720 34975517 3797 False 7014 7014 100.0000 1 3798 1 chr6D.!!$F1 3797
1 TraesCS6D01G069600 chr6D 47269890 47270447 557 False 863 863 94.6240 228 784 1 chr6D.!!$F2 556
2 TraesCS6D01G069600 chr6A 39143098 39145779 2681 False 639 1417 89.7790 829 3788 5 chr6A.!!$F1 2959
3 TraesCS6D01G069600 chr6B 708551009 708551607 598 False 689 689 87.8740 980 1565 1 chr6B.!!$F1 585
4 TraesCS6D01G069600 chr6B 72178805 72183410 4605 False 625 1328 88.6608 800 3782 5 chr6B.!!$F2 2982
5 TraesCS6D01G069600 chrUn 115109769 115110323 554 False 926 926 96.7630 229 783 1 chrUn.!!$F1 554
6 TraesCS6D01G069600 chr3D 63763542 63764099 557 True 902 902 95.8780 229 785 1 chr3D.!!$R1 556
7 TraesCS6D01G069600 chr1D 250740831 250741386 555 True 881 881 95.3240 229 783 1 chr1D.!!$R1 554
8 TraesCS6D01G069600 chr4D 63076818 63077380 562 True 872 872 94.6710 224 784 1 chr4D.!!$R1 560
9 TraesCS6D01G069600 chr4D 453054027 453054577 550 True 872 872 95.1350 228 782 1 chr4D.!!$R2 554
10 TraesCS6D01G069600 chr5B 318172800 318173354 554 False 870 870 94.9640 229 783 1 chr5B.!!$F1 554
11 TraesCS6D01G069600 chr5D 397029805 397030361 556 False 863 863 94.6240 229 786 1 chr5D.!!$F1 557
12 TraesCS6D01G069600 chr1B 305284316 305284871 555 True 859 859 94.6040 229 783 1 chr1B.!!$R1 554
13 TraesCS6D01G069600 chr1B 40485497 40486095 598 False 710 710 88.5000 980 1563 1 chr1B.!!$F1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.030908 CGGACGCTTCCTCCAGATAC 59.969 60.0 7.75 0.0 40.23 2.24 F
199 200 0.039527 CCGAAAAGGAAAAGCGGTGG 60.040 55.0 0.00 0.0 45.00 4.61 F
1718 1840 0.041238 AGACCTGTAGTGCTGGCCTA 59.959 55.0 3.32 0.0 39.53 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1864 0.036577 AGCCATCAGTCACAGCTCAC 60.037 55.0 0.00 0.00 0.00 3.51 R
1746 1868 0.036577 ACAGAGCCATCAGTCACAGC 60.037 55.0 0.00 0.00 0.00 4.40 R
3285 3582 0.035152 TAGTCTCCGGCGACACCTAA 60.035 55.0 25.55 3.72 36.38 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.845617 TCTCCGTTTCAAATTTCAAAATACG 57.154 32.000 0.00 0.00 0.00 3.06
25 26 7.419204 TCTCCGTTTCAAATTTCAAAATACGT 58.581 30.769 0.00 0.00 0.00 3.57
26 27 7.916450 TCTCCGTTTCAAATTTCAAAATACGTT 59.084 29.630 0.00 0.00 0.00 3.99
27 28 8.408743 TCCGTTTCAAATTTCAAAATACGTTT 57.591 26.923 0.00 0.00 0.00 3.60
28 29 8.870879 TCCGTTTCAAATTTCAAAATACGTTTT 58.129 25.926 0.00 0.00 38.03 2.43
48 49 9.804758 ACGTTTTAAATTTGATACAACTTTGGA 57.195 25.926 0.00 0.00 0.00 3.53
77 78 5.954296 TTAGTATAGAATCGGAAGGGACG 57.046 43.478 0.00 0.00 0.00 4.79
78 79 3.155501 AGTATAGAATCGGAAGGGACGG 58.844 50.000 0.00 0.00 0.00 4.79
79 80 2.376695 ATAGAATCGGAAGGGACGGA 57.623 50.000 0.00 0.00 0.00 4.69
80 81 1.688772 TAGAATCGGAAGGGACGGAG 58.311 55.000 0.00 0.00 0.00 4.63
81 82 0.033405 AGAATCGGAAGGGACGGAGA 60.033 55.000 0.00 0.00 0.00 3.71
82 83 0.386113 GAATCGGAAGGGACGGAGAG 59.614 60.000 0.00 0.00 0.00 3.20
83 84 0.033405 AATCGGAAGGGACGGAGAGA 60.033 55.000 0.00 0.00 0.00 3.10
84 85 0.466555 ATCGGAAGGGACGGAGAGAG 60.467 60.000 0.00 0.00 0.00 3.20
85 86 1.378778 CGGAAGGGACGGAGAGAGT 60.379 63.158 0.00 0.00 0.00 3.24
86 87 0.107312 CGGAAGGGACGGAGAGAGTA 60.107 60.000 0.00 0.00 0.00 2.59
87 88 1.682740 GGAAGGGACGGAGAGAGTAG 58.317 60.000 0.00 0.00 0.00 2.57
88 89 1.026584 GAAGGGACGGAGAGAGTAGC 58.973 60.000 0.00 0.00 0.00 3.58
89 90 0.331954 AAGGGACGGAGAGAGTAGCA 59.668 55.000 0.00 0.00 0.00 3.49
90 91 0.106918 AGGGACGGAGAGAGTAGCAG 60.107 60.000 0.00 0.00 0.00 4.24
91 92 0.394625 GGGACGGAGAGAGTAGCAGT 60.395 60.000 0.00 0.00 0.00 4.40
92 93 1.134159 GGGACGGAGAGAGTAGCAGTA 60.134 57.143 0.00 0.00 0.00 2.74
93 94 2.215196 GGACGGAGAGAGTAGCAGTAG 58.785 57.143 0.00 0.00 0.00 2.57
94 95 2.158928 GGACGGAGAGAGTAGCAGTAGA 60.159 54.545 0.00 0.00 0.00 2.59
95 96 3.533547 GACGGAGAGAGTAGCAGTAGAA 58.466 50.000 0.00 0.00 0.00 2.10
96 97 3.272581 ACGGAGAGAGTAGCAGTAGAAC 58.727 50.000 0.00 0.00 0.00 3.01
97 98 2.285756 CGGAGAGAGTAGCAGTAGAACG 59.714 54.545 0.00 0.00 0.00 3.95
98 99 2.614983 GGAGAGAGTAGCAGTAGAACGG 59.385 54.545 0.00 0.00 0.00 4.44
99 100 3.533547 GAGAGAGTAGCAGTAGAACGGA 58.466 50.000 0.00 0.00 0.00 4.69
100 101 3.272581 AGAGAGTAGCAGTAGAACGGAC 58.727 50.000 0.00 0.00 0.00 4.79
101 102 2.008329 AGAGTAGCAGTAGAACGGACG 58.992 52.381 0.00 0.00 0.00 4.79
102 103 0.450983 AGTAGCAGTAGAACGGACGC 59.549 55.000 0.00 0.00 0.00 5.19
103 104 0.450983 GTAGCAGTAGAACGGACGCT 59.549 55.000 0.00 0.00 33.45 5.07
104 105 1.135460 GTAGCAGTAGAACGGACGCTT 60.135 52.381 0.00 0.00 32.01 4.68
105 106 0.109226 AGCAGTAGAACGGACGCTTC 60.109 55.000 0.00 0.00 0.00 3.86
106 107 1.077089 GCAGTAGAACGGACGCTTCC 61.077 60.000 0.00 0.00 38.77 3.46
107 108 0.526662 CAGTAGAACGGACGCTTCCT 59.473 55.000 7.75 0.00 40.23 3.36
108 109 0.810016 AGTAGAACGGACGCTTCCTC 59.190 55.000 7.75 0.00 40.23 3.71
109 110 0.179142 GTAGAACGGACGCTTCCTCC 60.179 60.000 7.75 0.00 40.23 4.30
110 111 0.609957 TAGAACGGACGCTTCCTCCA 60.610 55.000 7.75 0.00 40.23 3.86
111 112 1.446272 GAACGGACGCTTCCTCCAG 60.446 63.158 7.75 0.00 40.23 3.86
112 113 1.874345 GAACGGACGCTTCCTCCAGA 61.874 60.000 7.75 0.00 40.23 3.86
113 114 1.258445 AACGGACGCTTCCTCCAGAT 61.258 55.000 7.75 0.00 40.23 2.90
114 115 0.395311 ACGGACGCTTCCTCCAGATA 60.395 55.000 7.75 0.00 40.23 1.98
115 116 0.030908 CGGACGCTTCCTCCAGATAC 59.969 60.000 7.75 0.00 40.23 2.24
116 117 1.112113 GGACGCTTCCTCCAGATACA 58.888 55.000 1.07 0.00 39.13 2.29
117 118 1.067821 GGACGCTTCCTCCAGATACAG 59.932 57.143 1.07 0.00 39.13 2.74
118 119 2.025155 GACGCTTCCTCCAGATACAGA 58.975 52.381 0.00 0.00 0.00 3.41
119 120 2.625790 GACGCTTCCTCCAGATACAGAT 59.374 50.000 0.00 0.00 0.00 2.90
120 121 3.821600 GACGCTTCCTCCAGATACAGATA 59.178 47.826 0.00 0.00 0.00 1.98
121 122 3.570550 ACGCTTCCTCCAGATACAGATAC 59.429 47.826 0.00 0.00 0.00 2.24
122 123 3.570125 CGCTTCCTCCAGATACAGATACA 59.430 47.826 0.00 0.00 0.00 2.29
123 124 4.320861 CGCTTCCTCCAGATACAGATACAG 60.321 50.000 0.00 0.00 0.00 2.74
124 125 4.021544 GCTTCCTCCAGATACAGATACAGG 60.022 50.000 0.00 0.00 0.00 4.00
125 126 4.119556 TCCTCCAGATACAGATACAGGG 57.880 50.000 0.00 0.00 0.00 4.45
126 127 2.564947 CCTCCAGATACAGATACAGGGC 59.435 54.545 0.00 0.00 0.00 5.19
127 128 3.234353 CTCCAGATACAGATACAGGGCA 58.766 50.000 0.00 0.00 0.00 5.36
128 129 3.234353 TCCAGATACAGATACAGGGCAG 58.766 50.000 0.00 0.00 0.00 4.85
129 130 2.289320 CCAGATACAGATACAGGGCAGC 60.289 54.545 0.00 0.00 0.00 5.25
130 131 1.974236 AGATACAGATACAGGGCAGCC 59.026 52.381 1.26 1.26 0.00 4.85
131 132 1.974236 GATACAGATACAGGGCAGCCT 59.026 52.381 12.43 0.00 0.00 4.58
132 133 1.123077 TACAGATACAGGGCAGCCTG 58.877 55.000 12.43 10.26 42.90 4.85
133 134 1.525535 CAGATACAGGGCAGCCTGC 60.526 63.158 12.43 8.55 44.08 4.85
143 144 2.750637 CAGCCTGCCAAGCTCCAG 60.751 66.667 0.00 0.00 38.95 3.86
144 145 4.737177 AGCCTGCCAAGCTCCAGC 62.737 66.667 0.00 0.00 34.91 4.85
154 155 3.612251 GCTCCAGCGGGTACAGTA 58.388 61.111 1.81 0.00 34.93 2.74
155 156 1.141234 GCTCCAGCGGGTACAGTAC 59.859 63.158 1.81 1.59 34.93 2.73
156 157 1.432251 CTCCAGCGGGTACAGTACG 59.568 63.158 1.81 0.00 34.93 3.67
161 162 2.406401 CGGGTACAGTACGCTCGG 59.594 66.667 21.81 6.51 39.24 4.63
162 163 2.103736 GGGTACAGTACGCTCGGC 59.896 66.667 18.31 0.00 38.45 5.54
163 164 2.413142 GGGTACAGTACGCTCGGCT 61.413 63.158 18.31 0.00 38.45 5.52
164 165 1.063811 GGTACAGTACGCTCGGCTC 59.936 63.158 4.58 0.00 0.00 4.70
165 166 1.297451 GTACAGTACGCTCGGCTCG 60.297 63.158 0.00 0.00 0.00 5.03
166 167 1.742880 TACAGTACGCTCGGCTCGT 60.743 57.895 3.43 3.43 43.20 4.18
167 168 1.974249 TACAGTACGCTCGGCTCGTG 61.974 60.000 7.55 0.00 40.69 4.35
168 169 4.477975 AGTACGCTCGGCTCGTGC 62.478 66.667 0.00 0.00 41.87 5.34
179 180 4.796231 CTCGTGCGGCGGTAGCTT 62.796 66.667 9.78 0.00 44.37 3.74
180 181 4.789075 TCGTGCGGCGGTAGCTTC 62.789 66.667 9.78 0.00 44.37 3.86
198 199 3.472263 CCGAAAAGGAAAAGCGGTG 57.528 52.632 0.00 0.00 45.00 4.94
199 200 0.039527 CCGAAAAGGAAAAGCGGTGG 60.040 55.000 0.00 0.00 45.00 4.61
200 201 0.663269 CGAAAAGGAAAAGCGGTGGC 60.663 55.000 0.00 0.00 40.37 5.01
201 202 0.663269 GAAAAGGAAAAGCGGTGGCG 60.663 55.000 0.00 0.00 46.35 5.69
202 203 1.388837 AAAAGGAAAAGCGGTGGCGT 61.389 50.000 0.00 0.00 46.35 5.68
203 204 2.070654 AAAGGAAAAGCGGTGGCGTG 62.071 55.000 0.00 0.00 46.35 5.34
204 205 3.284449 GGAAAAGCGGTGGCGTGT 61.284 61.111 0.00 0.00 46.35 4.49
205 206 2.051345 GAAAAGCGGTGGCGTGTG 60.051 61.111 0.00 0.00 46.35 3.82
206 207 2.515057 AAAAGCGGTGGCGTGTGA 60.515 55.556 0.00 0.00 46.35 3.58
207 208 2.711185 GAAAAGCGGTGGCGTGTGAC 62.711 60.000 0.00 0.00 46.35 3.67
218 219 3.727146 GTGTGACCACGGACCAAC 58.273 61.111 0.00 0.00 0.00 3.77
219 220 1.890510 GTGTGACCACGGACCAACC 60.891 63.158 0.00 0.00 0.00 3.77
220 221 2.067605 TGTGACCACGGACCAACCT 61.068 57.895 0.00 0.00 36.31 3.50
221 222 1.301479 GTGACCACGGACCAACCTC 60.301 63.158 0.00 0.00 36.31 3.85
222 223 1.762858 TGACCACGGACCAACCTCA 60.763 57.895 0.00 0.00 36.31 3.86
223 224 1.338890 TGACCACGGACCAACCTCAA 61.339 55.000 0.00 0.00 36.31 3.02
224 225 0.883370 GACCACGGACCAACCTCAAC 60.883 60.000 0.00 0.00 36.31 3.18
225 226 1.599797 CCACGGACCAACCTCAACC 60.600 63.158 0.00 0.00 36.31 3.77
226 227 1.450211 CACGGACCAACCTCAACCT 59.550 57.895 0.00 0.00 36.31 3.50
251 252 4.385748 GGCAAAATCGACAAATTTGACCTC 59.614 41.667 24.64 10.76 36.32 3.85
254 255 4.425577 AATCGACAAATTTGACCTCTGC 57.574 40.909 24.64 4.17 0.00 4.26
307 308 2.024176 AACTATTTCACGCGGCTGAT 57.976 45.000 12.47 1.51 0.00 2.90
327 328 0.591170 CTTTTTGTGTGACGCCCGAT 59.409 50.000 0.00 0.00 0.00 4.18
329 330 2.102070 TTTTGTGTGACGCCCGATAT 57.898 45.000 0.00 0.00 0.00 1.63
441 442 3.619767 TGTGCAGCGCCTGAGAGT 61.620 61.111 2.29 0.00 32.44 3.24
720 722 1.803334 AAGTCAGCCGCGTGAAATAA 58.197 45.000 4.92 0.00 0.00 1.40
762 764 4.893608 TGTGATTTGATTTCGTCCTCAGA 58.106 39.130 0.00 0.00 0.00 3.27
788 790 6.375945 AAATTTGTCAAATTTGCCCTCAAC 57.624 33.333 27.61 5.96 46.30 3.18
789 791 3.467374 TTGTCAAATTTGCCCTCAACC 57.533 42.857 13.54 0.00 30.75 3.77
790 792 2.676748 TGTCAAATTTGCCCTCAACCT 58.323 42.857 13.54 0.00 30.75 3.50
791 793 2.627699 TGTCAAATTTGCCCTCAACCTC 59.372 45.455 13.54 0.00 30.75 3.85
792 794 2.627699 GTCAAATTTGCCCTCAACCTCA 59.372 45.455 13.54 0.00 30.75 3.86
793 795 2.892852 TCAAATTTGCCCTCAACCTCAG 59.107 45.455 13.54 0.00 30.75 3.35
794 796 1.260544 AATTTGCCCTCAACCTCAGC 58.739 50.000 0.00 0.00 30.75 4.26
795 797 0.613012 ATTTGCCCTCAACCTCAGCC 60.613 55.000 0.00 0.00 30.75 4.85
796 798 1.719063 TTTGCCCTCAACCTCAGCCT 61.719 55.000 0.00 0.00 30.75 4.58
797 799 0.840288 TTGCCCTCAACCTCAGCCTA 60.840 55.000 0.00 0.00 0.00 3.93
798 800 1.222113 GCCCTCAACCTCAGCCTAC 59.778 63.158 0.00 0.00 0.00 3.18
803 805 2.166664 CCTCAACCTCAGCCTACAGTAC 59.833 54.545 0.00 0.00 0.00 2.73
805 807 3.090037 TCAACCTCAGCCTACAGTACTC 58.910 50.000 0.00 0.00 0.00 2.59
838 840 1.227089 CAGAATCCAGCGGACGAGG 60.227 63.158 0.00 0.00 32.98 4.63
916 920 1.702491 GCTGACGTTGTTATCCGGCC 61.702 60.000 0.00 0.00 0.00 6.13
917 921 0.390603 CTGACGTTGTTATCCGGCCA 60.391 55.000 2.24 0.00 0.00 5.36
918 922 0.250793 TGACGTTGTTATCCGGCCAT 59.749 50.000 2.24 0.00 0.00 4.40
938 945 4.106341 CCATTATTAATCAGTCCACCCCCT 59.894 45.833 0.00 0.00 0.00 4.79
961 971 4.664677 CCCGGCCGGATCATCGTC 62.665 72.222 45.44 0.00 37.50 4.20
962 972 3.911698 CCGGCCGGATCATCGTCA 61.912 66.667 41.82 0.00 37.50 4.35
963 973 2.340078 CGGCCGGATCATCGTCAT 59.660 61.111 20.10 0.00 0.00 3.06
964 974 1.734477 CGGCCGGATCATCGTCATC 60.734 63.158 20.10 0.00 0.00 2.92
965 975 1.734477 GGCCGGATCATCGTCATCG 60.734 63.158 5.05 0.00 38.55 3.84
966 976 1.007271 GCCGGATCATCGTCATCGT 60.007 57.895 5.05 0.00 38.33 3.73
967 977 1.004277 GCCGGATCATCGTCATCGTC 61.004 60.000 5.05 0.00 38.33 4.20
968 978 0.310854 CCGGATCATCGTCATCGTCA 59.689 55.000 0.00 0.00 38.33 4.35
969 979 1.068264 CCGGATCATCGTCATCGTCAT 60.068 52.381 0.00 0.00 38.33 3.06
970 980 2.245942 CGGATCATCGTCATCGTCATC 58.754 52.381 0.00 0.00 38.33 2.92
971 981 2.245942 GGATCATCGTCATCGTCATCG 58.754 52.381 0.00 0.00 38.33 3.84
972 982 2.245942 GATCATCGTCATCGTCATCGG 58.754 52.381 0.00 0.00 38.33 4.18
973 983 0.317854 TCATCGTCATCGTCATCGGC 60.318 55.000 0.00 0.00 38.33 5.54
974 984 1.370535 ATCGTCATCGTCATCGGCG 60.371 57.895 0.00 0.00 38.33 6.46
975 985 2.733171 ATCGTCATCGTCATCGGCGG 62.733 60.000 7.21 0.00 38.33 6.13
976 986 3.330853 GTCATCGTCATCGGCGGC 61.331 66.667 7.21 0.00 37.69 6.53
1010 1026 2.747686 GTCCGTGATGGTGGTGGT 59.252 61.111 0.00 0.00 39.52 4.16
1019 1035 1.125093 ATGGTGGTGGTGACGGAGAA 61.125 55.000 0.00 0.00 0.00 2.87
1020 1036 1.004918 GGTGGTGGTGACGGAGAAG 60.005 63.158 0.00 0.00 0.00 2.85
1021 1037 1.004918 GTGGTGGTGACGGAGAAGG 60.005 63.158 0.00 0.00 0.00 3.46
1022 1038 1.152419 TGGTGGTGACGGAGAAGGA 60.152 57.895 0.00 0.00 0.00 3.36
1203 1219 2.042230 GTCGCCTTCCCCTCCCTA 60.042 66.667 0.00 0.00 0.00 3.53
1212 1228 3.470888 CCCTCCCTACACGCCCTG 61.471 72.222 0.00 0.00 0.00 4.45
1293 1325 3.232213 TGAACGGACAGATCTAGCAAC 57.768 47.619 0.00 0.00 0.00 4.17
1294 1326 2.560981 TGAACGGACAGATCTAGCAACA 59.439 45.455 0.00 0.00 0.00 3.33
1295 1327 2.656560 ACGGACAGATCTAGCAACAC 57.343 50.000 0.00 0.00 0.00 3.32
1297 1329 1.471676 CGGACAGATCTAGCAACACCC 60.472 57.143 0.00 0.00 0.00 4.61
1298 1330 1.555075 GGACAGATCTAGCAACACCCA 59.445 52.381 0.00 0.00 0.00 4.51
1302 1334 4.666512 ACAGATCTAGCAACACCCAAATT 58.333 39.130 0.00 0.00 0.00 1.82
1317 1349 4.202243 ACCCAAATTAATCCATCCATTGCG 60.202 41.667 0.00 0.00 0.00 4.85
1339 1375 3.204505 CGGCGCCGATTATTAGGAA 57.795 52.632 44.86 0.00 42.83 3.36
1340 1376 0.788391 CGGCGCCGATTATTAGGAAC 59.212 55.000 44.86 0.83 42.83 3.62
1346 1385 4.091509 GCGCCGATTATTAGGAACATAGTG 59.908 45.833 0.00 0.00 0.00 2.74
1386 1425 6.098266 TGTTCTTCCAGATTAATCTCCATCGA 59.902 38.462 15.24 6.05 34.22 3.59
1415 1459 4.097741 CAGATCGACCAATCTCTCAGTTCT 59.902 45.833 0.00 0.00 33.68 3.01
1417 1461 4.966965 TCGACCAATCTCTCAGTTCTAC 57.033 45.455 0.00 0.00 0.00 2.59
1421 1465 3.444388 ACCAATCTCTCAGTTCTACCGAC 59.556 47.826 0.00 0.00 0.00 4.79
1551 1596 2.104792 CCTGGAGGACAAGAACTTCACA 59.895 50.000 0.00 0.00 37.39 3.58
1575 1620 1.614903 TCGTACGACACCAACATTCCT 59.385 47.619 15.28 0.00 0.00 3.36
1584 1629 0.609131 CCAACATTCCTCGCCAGGTT 60.609 55.000 0.00 0.00 41.28 3.50
1588 1710 2.680370 ATTCCTCGCCAGGTTCCCC 61.680 63.158 0.00 0.00 41.28 4.81
1594 1716 2.983879 CGCCAGGTTCCCCCAGATT 61.984 63.158 0.00 0.00 34.66 2.40
1605 1727 1.412074 CCCCCAGATTCCCCAAAGATG 60.412 57.143 0.00 0.00 0.00 2.90
1606 1728 1.406903 CCCAGATTCCCCAAAGATGC 58.593 55.000 0.00 0.00 0.00 3.91
1609 1731 3.436906 CCCAGATTCCCCAAAGATGCATA 60.437 47.826 0.00 0.00 0.00 3.14
1615 1737 5.404466 TTCCCCAAAGATGCATACTTTTG 57.596 39.130 16.56 17.02 35.74 2.44
1616 1738 4.415596 TCCCCAAAGATGCATACTTTTGT 58.584 39.130 20.42 4.09 35.74 2.83
1619 1741 6.667414 TCCCCAAAGATGCATACTTTTGTAAT 59.333 34.615 20.42 3.07 38.54 1.89
1623 1745 8.190122 CCAAAGATGCATACTTTTGTAATGCTA 58.810 33.333 20.42 0.00 38.74 3.49
1627 1749 4.946772 TGCATACTTTTGTAATGCTAGCCA 59.053 37.500 13.29 0.00 38.74 4.75
1629 1751 6.145535 GCATACTTTTGTAATGCTAGCCATC 58.854 40.000 13.29 0.85 38.54 3.51
1630 1752 6.238731 GCATACTTTTGTAATGCTAGCCATCA 60.239 38.462 13.29 3.64 38.54 3.07
1631 1753 5.824904 ACTTTTGTAATGCTAGCCATCAG 57.175 39.130 13.29 4.50 31.43 2.90
1633 1755 3.931907 TTGTAATGCTAGCCATCAGGT 57.068 42.857 13.29 0.00 37.19 4.00
1634 1756 3.475566 TGTAATGCTAGCCATCAGGTC 57.524 47.619 13.29 0.00 37.19 3.85
1635 1757 2.104792 TGTAATGCTAGCCATCAGGTCC 59.895 50.000 13.29 0.00 37.19 4.46
1636 1758 0.475906 AATGCTAGCCATCAGGTCCC 59.524 55.000 13.29 0.00 37.19 4.46
1637 1759 1.422161 ATGCTAGCCATCAGGTCCCC 61.422 60.000 13.29 0.00 37.19 4.81
1638 1760 2.072487 GCTAGCCATCAGGTCCCCA 61.072 63.158 2.29 0.00 37.19 4.96
1639 1761 1.832912 CTAGCCATCAGGTCCCCAC 59.167 63.158 0.00 0.00 37.19 4.61
1640 1762 1.692749 TAGCCATCAGGTCCCCACC 60.693 63.158 0.00 0.00 44.19 4.61
1641 1763 4.129148 GCCATCAGGTCCCCACCC 62.129 72.222 0.00 0.00 45.12 4.61
1642 1764 2.286425 CCATCAGGTCCCCACCCT 60.286 66.667 0.00 0.00 45.12 4.34
1644 1766 1.609783 CATCAGGTCCCCACCCTTC 59.390 63.158 0.00 0.00 45.12 3.46
1645 1767 1.619669 ATCAGGTCCCCACCCTTCC 60.620 63.158 0.00 0.00 45.12 3.46
1647 1769 1.852626 CAGGTCCCCACCCTTCCTT 60.853 63.158 0.00 0.00 45.12 3.36
1648 1770 0.549169 CAGGTCCCCACCCTTCCTTA 60.549 60.000 0.00 0.00 45.12 2.69
1649 1771 0.253207 AGGTCCCCACCCTTCCTTAG 60.253 60.000 0.00 0.00 45.12 2.18
1650 1772 0.253020 GGTCCCCACCCTTCCTTAGA 60.253 60.000 0.00 0.00 36.54 2.10
1652 1774 2.206223 GTCCCCACCCTTCCTTAGATT 58.794 52.381 0.00 0.00 0.00 2.40
1653 1775 2.172930 GTCCCCACCCTTCCTTAGATTC 59.827 54.545 0.00 0.00 0.00 2.52
1654 1776 1.495148 CCCCACCCTTCCTTAGATTCC 59.505 57.143 0.00 0.00 0.00 3.01
1655 1777 1.495148 CCCACCCTTCCTTAGATTCCC 59.505 57.143 0.00 0.00 0.00 3.97
1656 1778 1.495148 CCACCCTTCCTTAGATTCCCC 59.505 57.143 0.00 0.00 0.00 4.81
1657 1779 1.495148 CACCCTTCCTTAGATTCCCCC 59.505 57.143 0.00 0.00 0.00 5.40
1658 1780 1.083912 ACCCTTCCTTAGATTCCCCCA 59.916 52.381 0.00 0.00 0.00 4.96
1659 1781 2.214201 CCCTTCCTTAGATTCCCCCAA 58.786 52.381 0.00 0.00 0.00 4.12
1660 1782 2.585432 CCCTTCCTTAGATTCCCCCAAA 59.415 50.000 0.00 0.00 0.00 3.28
1661 1783 3.207549 CCCTTCCTTAGATTCCCCCAAAT 59.792 47.826 0.00 0.00 0.00 2.32
1662 1784 4.418863 CCCTTCCTTAGATTCCCCCAAATA 59.581 45.833 0.00 0.00 0.00 1.40
1663 1785 5.076458 CCCTTCCTTAGATTCCCCCAAATAT 59.924 44.000 0.00 0.00 0.00 1.28
1664 1786 6.413207 CCCTTCCTTAGATTCCCCCAAATATT 60.413 42.308 0.00 0.00 0.00 1.28
1665 1787 6.721668 CCTTCCTTAGATTCCCCCAAATATTC 59.278 42.308 0.00 0.00 0.00 1.75
1666 1788 6.857083 TCCTTAGATTCCCCCAAATATTCA 57.143 37.500 0.00 0.00 0.00 2.57
1667 1789 6.610830 TCCTTAGATTCCCCCAAATATTCAC 58.389 40.000 0.00 0.00 0.00 3.18
1668 1790 6.161348 TCCTTAGATTCCCCCAAATATTCACA 59.839 38.462 0.00 0.00 0.00 3.58
1669 1791 6.838612 CCTTAGATTCCCCCAAATATTCACAA 59.161 38.462 0.00 0.00 0.00 3.33
1670 1792 7.510343 CCTTAGATTCCCCCAAATATTCACAAT 59.490 37.037 0.00 0.00 0.00 2.71
1671 1793 6.736110 AGATTCCCCCAAATATTCACAATG 57.264 37.500 0.00 0.00 0.00 2.82
1672 1794 5.603813 AGATTCCCCCAAATATTCACAATGG 59.396 40.000 0.00 0.00 0.00 3.16
1673 1795 3.037549 TCCCCCAAATATTCACAATGGC 58.962 45.455 0.00 0.00 0.00 4.40
1674 1796 2.104622 CCCCCAAATATTCACAATGGCC 59.895 50.000 0.00 0.00 0.00 5.36
1675 1797 3.040477 CCCCAAATATTCACAATGGCCT 58.960 45.455 3.32 0.00 0.00 5.19
1676 1798 4.222336 CCCCAAATATTCACAATGGCCTA 58.778 43.478 3.32 0.00 0.00 3.93
1677 1799 4.281688 CCCCAAATATTCACAATGGCCTAG 59.718 45.833 3.32 0.00 0.00 3.02
1678 1800 4.262164 CCCAAATATTCACAATGGCCTAGC 60.262 45.833 3.32 0.00 0.00 3.42
1679 1801 4.341806 CCAAATATTCACAATGGCCTAGCA 59.658 41.667 3.32 0.00 0.00 3.49
1680 1802 5.011329 CCAAATATTCACAATGGCCTAGCAT 59.989 40.000 3.32 0.00 0.00 3.79
1681 1803 5.717078 AATATTCACAATGGCCTAGCATG 57.283 39.130 3.32 0.00 0.00 4.06
1682 1804 2.512692 TTCACAATGGCCTAGCATGT 57.487 45.000 3.32 0.00 0.00 3.21
1683 1805 2.512692 TCACAATGGCCTAGCATGTT 57.487 45.000 3.32 0.00 0.00 2.71
1684 1806 2.806434 TCACAATGGCCTAGCATGTTT 58.194 42.857 3.32 0.00 0.00 2.83
1685 1807 3.164268 TCACAATGGCCTAGCATGTTTT 58.836 40.909 3.32 0.00 0.00 2.43
1686 1808 3.577848 TCACAATGGCCTAGCATGTTTTT 59.422 39.130 3.32 0.00 0.00 1.94
1709 1831 8.519799 TTTTTCTTTTTCATCAGACCTGTAGT 57.480 30.769 0.00 0.00 0.00 2.73
1710 1832 7.496529 TTTCTTTTTCATCAGACCTGTAGTG 57.503 36.000 0.00 0.00 0.00 2.74
1711 1833 4.997395 TCTTTTTCATCAGACCTGTAGTGC 59.003 41.667 0.00 0.00 0.00 4.40
1712 1834 4.623932 TTTTCATCAGACCTGTAGTGCT 57.376 40.909 0.00 0.00 0.00 4.40
1713 1835 3.599730 TTCATCAGACCTGTAGTGCTG 57.400 47.619 0.00 0.00 0.00 4.41
1714 1836 1.827344 TCATCAGACCTGTAGTGCTGG 59.173 52.381 2.51 2.51 41.41 4.85
1715 1837 0.539051 ATCAGACCTGTAGTGCTGGC 59.461 55.000 4.00 0.00 39.53 4.85
1716 1838 1.078848 CAGACCTGTAGTGCTGGCC 60.079 63.158 0.00 0.00 39.53 5.36
1717 1839 1.229336 AGACCTGTAGTGCTGGCCT 60.229 57.895 3.32 0.00 39.53 5.19
1718 1840 0.041238 AGACCTGTAGTGCTGGCCTA 59.959 55.000 3.32 0.00 39.53 3.93
1719 1841 0.461961 GACCTGTAGTGCTGGCCTAG 59.538 60.000 3.32 0.34 39.53 3.02
1732 1854 1.809684 GGCCTAGCCCATCGTTATTC 58.190 55.000 0.00 0.00 44.06 1.75
1733 1855 1.071699 GGCCTAGCCCATCGTTATTCA 59.928 52.381 0.00 0.00 44.06 2.57
1734 1856 2.417719 GCCTAGCCCATCGTTATTCAG 58.582 52.381 0.00 0.00 0.00 3.02
1735 1857 2.037251 GCCTAGCCCATCGTTATTCAGA 59.963 50.000 0.00 0.00 0.00 3.27
1736 1858 3.862642 GCCTAGCCCATCGTTATTCAGAG 60.863 52.174 0.00 0.00 0.00 3.35
1737 1859 3.322254 CCTAGCCCATCGTTATTCAGAGT 59.678 47.826 0.00 0.00 0.00 3.24
1738 1860 3.914426 AGCCCATCGTTATTCAGAGTT 57.086 42.857 0.00 0.00 0.00 3.01
1739 1861 3.535561 AGCCCATCGTTATTCAGAGTTG 58.464 45.455 0.00 0.00 0.00 3.16
1740 1862 3.055094 AGCCCATCGTTATTCAGAGTTGT 60.055 43.478 0.00 0.00 0.00 3.32
1741 1863 3.689649 GCCCATCGTTATTCAGAGTTGTT 59.310 43.478 0.00 0.00 0.00 2.83
1742 1864 4.437390 GCCCATCGTTATTCAGAGTTGTTG 60.437 45.833 0.00 0.00 0.00 3.33
1743 1865 4.695455 CCCATCGTTATTCAGAGTTGTTGT 59.305 41.667 0.00 0.00 0.00 3.32
1744 1866 5.390885 CCCATCGTTATTCAGAGTTGTTGTG 60.391 44.000 0.00 0.00 0.00 3.33
1745 1867 5.408299 CCATCGTTATTCAGAGTTGTTGTGA 59.592 40.000 0.00 0.00 0.00 3.58
1746 1868 6.401474 CCATCGTTATTCAGAGTTGTTGTGAG 60.401 42.308 0.00 0.00 29.81 3.51
1747 1869 4.447724 TCGTTATTCAGAGTTGTTGTGAGC 59.552 41.667 0.00 0.00 29.81 4.26
1748 1870 4.449068 CGTTATTCAGAGTTGTTGTGAGCT 59.551 41.667 0.00 0.00 29.81 4.09
1749 1871 5.613360 CGTTATTCAGAGTTGTTGTGAGCTG 60.613 44.000 0.00 0.00 29.81 4.24
1750 1872 2.988010 TCAGAGTTGTTGTGAGCTGT 57.012 45.000 0.00 0.00 0.00 4.40
1751 1873 2.554142 TCAGAGTTGTTGTGAGCTGTG 58.446 47.619 0.00 0.00 0.00 3.66
1752 1874 2.168313 TCAGAGTTGTTGTGAGCTGTGA 59.832 45.455 0.00 0.00 0.00 3.58
1753 1875 2.286294 CAGAGTTGTTGTGAGCTGTGAC 59.714 50.000 0.00 0.00 0.00 3.67
1754 1876 2.169352 AGAGTTGTTGTGAGCTGTGACT 59.831 45.455 0.00 0.00 0.00 3.41
1755 1877 2.283298 AGTTGTTGTGAGCTGTGACTG 58.717 47.619 0.00 0.00 0.00 3.51
1756 1878 2.093500 AGTTGTTGTGAGCTGTGACTGA 60.093 45.455 0.00 0.00 0.00 3.41
1757 1879 2.874701 GTTGTTGTGAGCTGTGACTGAT 59.125 45.455 0.00 0.00 0.00 2.90
1758 1880 2.486918 TGTTGTGAGCTGTGACTGATG 58.513 47.619 0.00 0.00 0.00 3.07
1759 1881 1.802960 GTTGTGAGCTGTGACTGATGG 59.197 52.381 0.00 0.00 0.00 3.51
1760 1882 0.321034 TGTGAGCTGTGACTGATGGC 60.321 55.000 0.00 0.00 0.00 4.40
1761 1883 0.036577 GTGAGCTGTGACTGATGGCT 60.037 55.000 0.00 0.00 35.86 4.75
1762 1884 0.248565 TGAGCTGTGACTGATGGCTC 59.751 55.000 0.00 0.00 46.41 4.70
1763 1885 0.536260 GAGCTGTGACTGATGGCTCT 59.464 55.000 0.00 0.00 43.92 4.09
1764 1886 0.249676 AGCTGTGACTGATGGCTCTG 59.750 55.000 0.00 0.00 0.00 3.35
1765 1887 0.036577 GCTGTGACTGATGGCTCTGT 60.037 55.000 0.00 0.00 36.39 3.41
1766 1888 1.610102 GCTGTGACTGATGGCTCTGTT 60.610 52.381 0.00 0.00 34.11 3.16
1767 1889 2.775890 CTGTGACTGATGGCTCTGTTT 58.224 47.619 0.00 0.00 34.11 2.83
1768 1890 2.483106 CTGTGACTGATGGCTCTGTTTG 59.517 50.000 0.00 0.00 34.11 2.93
1769 1891 2.158769 TGTGACTGATGGCTCTGTTTGT 60.159 45.455 0.00 0.00 34.11 2.83
1770 1892 2.880890 GTGACTGATGGCTCTGTTTGTT 59.119 45.455 0.00 0.00 34.11 2.83
1771 1893 3.316308 GTGACTGATGGCTCTGTTTGTTT 59.684 43.478 0.00 0.00 34.11 2.83
1772 1894 4.515191 GTGACTGATGGCTCTGTTTGTTTA 59.485 41.667 0.00 0.00 34.11 2.01
1773 1895 4.515191 TGACTGATGGCTCTGTTTGTTTAC 59.485 41.667 0.00 0.00 34.11 2.01
1774 1896 4.718961 ACTGATGGCTCTGTTTGTTTACT 58.281 39.130 0.00 0.00 30.12 2.24
1780 1902 2.096218 GCTCTGTTTGTTTACTCTGCCG 60.096 50.000 0.00 0.00 0.00 5.69
1898 2020 0.259938 GGCCCAACCTCATCCTCAAT 59.740 55.000 0.00 0.00 34.51 2.57
2091 2217 5.841267 TTAGCCAGGAGCATATGGATAAA 57.159 39.130 4.56 0.00 42.72 1.40
2092 2218 6.392911 TTAGCCAGGAGCATATGGATAAAT 57.607 37.500 4.56 0.00 42.72 1.40
2389 2516 5.868257 TGCGTTGTTGCAGAAGAATTATAG 58.132 37.500 0.00 0.00 40.62 1.31
2390 2517 5.411361 TGCGTTGTTGCAGAAGAATTATAGT 59.589 36.000 0.00 0.00 40.62 2.12
2399 2526 4.683781 CAGAAGAATTATAGTGAGCTCGCC 59.316 45.833 23.37 9.37 0.00 5.54
2413 2540 1.737838 CTCGCCAGGCTTATGAACAA 58.262 50.000 10.54 0.00 0.00 2.83
2452 2579 1.215647 GAGACCAATGCCGACGAGT 59.784 57.895 0.00 0.00 0.00 4.18
2456 2583 0.034896 ACCAATGCCGACGAGTCTTT 59.965 50.000 0.00 0.00 0.00 2.52
2469 2596 3.065371 ACGAGTCTTTGAAAACAGCCTTG 59.935 43.478 0.00 0.00 0.00 3.61
2473 2600 6.136541 AGTCTTTGAAAACAGCCTTGTTAG 57.863 37.500 0.00 0.00 46.54 2.34
2474 2601 5.885912 AGTCTTTGAAAACAGCCTTGTTAGA 59.114 36.000 0.00 0.00 46.54 2.10
2475 2602 5.971792 GTCTTTGAAAACAGCCTTGTTAGAC 59.028 40.000 4.08 4.08 46.54 2.59
2477 2604 3.219281 TGAAAACAGCCTTGTTAGACCC 58.781 45.455 0.00 0.00 46.54 4.46
2478 2605 3.219281 GAAAACAGCCTTGTTAGACCCA 58.781 45.455 0.00 0.00 46.54 4.51
2479 2606 3.525800 AAACAGCCTTGTTAGACCCAT 57.474 42.857 0.00 0.00 46.54 4.00
2481 2608 1.705186 ACAGCCTTGTTAGACCCATGT 59.295 47.619 0.00 0.00 32.28 3.21
2482 2609 2.108250 ACAGCCTTGTTAGACCCATGTT 59.892 45.455 0.00 0.00 32.28 2.71
2483 2610 2.489329 CAGCCTTGTTAGACCCATGTTG 59.511 50.000 0.00 0.00 0.00 3.33
2484 2611 2.108250 AGCCTTGTTAGACCCATGTTGT 59.892 45.455 0.00 0.00 0.00 3.32
2524 2665 4.637276 TGCAGCAGTACAAGCTAGTTAAA 58.363 39.130 11.81 0.00 41.14 1.52
2526 2667 5.122239 TGCAGCAGTACAAGCTAGTTAAATG 59.878 40.000 11.81 1.29 41.14 2.32
2528 2669 4.636206 AGCAGTACAAGCTAGTTAAATGGC 59.364 41.667 10.67 2.74 41.32 4.40
2529 2670 4.636206 GCAGTACAAGCTAGTTAAATGGCT 59.364 41.667 8.05 8.05 38.87 4.75
2543 2684 0.895100 ATGGCTGTGCACGATTGGTT 60.895 50.000 13.13 0.00 0.00 3.67
2560 2701 2.158842 TGGTTGCAGGAAAATGTTTGGG 60.159 45.455 0.00 0.00 0.00 4.12
2566 2707 2.825532 CAGGAAAATGTTTGGGGACGAT 59.174 45.455 0.00 0.00 0.00 3.73
2638 2779 1.445410 CGCATCGAAGTTCACGGGA 60.445 57.895 3.32 0.00 0.00 5.14
2641 2782 0.721718 CATCGAAGTTCACGGGAAGC 59.278 55.000 0.00 0.00 32.62 3.86
2778 2919 0.251077 ACAAAGGAGGAGCTGGCAAG 60.251 55.000 0.00 0.00 0.00 4.01
2791 2932 2.159462 GCTGGCAAGCTTATCAAGTCAC 60.159 50.000 5.60 0.00 46.60 3.67
2834 2975 7.506114 TCATATATTCAAATATACGCCCTCCC 58.494 38.462 4.92 0.00 36.85 4.30
2847 2988 1.049402 CCCTCCCTCCCGAATTAGTC 58.951 60.000 0.00 0.00 0.00 2.59
2861 3002 6.642659 CGAATTAGTCGTCTTAGATTCGTC 57.357 41.667 18.01 0.00 45.09 4.20
2862 3003 6.420588 CGAATTAGTCGTCTTAGATTCGTCT 58.579 40.000 18.01 1.84 45.09 4.18
2863 3004 7.562412 CGAATTAGTCGTCTTAGATTCGTCTA 58.438 38.462 18.01 1.05 45.09 2.59
2864 3005 7.736880 CGAATTAGTCGTCTTAGATTCGTCTAG 59.263 40.741 18.01 0.00 45.09 2.43
2865 3006 8.659925 AATTAGTCGTCTTAGATTCGTCTAGA 57.340 34.615 0.00 0.00 30.50 2.43
2866 3007 8.836268 ATTAGTCGTCTTAGATTCGTCTAGAT 57.164 34.615 0.00 0.00 30.50 1.98
2867 3008 9.926158 ATTAGTCGTCTTAGATTCGTCTAGATA 57.074 33.333 0.00 0.00 30.50 1.98
2868 3009 7.642071 AGTCGTCTTAGATTCGTCTAGATAC 57.358 40.000 0.00 0.00 0.00 2.24
2869 3010 6.363088 AGTCGTCTTAGATTCGTCTAGATACG 59.637 42.308 0.00 0.00 44.19 3.06
2870 3011 6.143758 GTCGTCTTAGATTCGTCTAGATACGT 59.856 42.308 0.00 0.00 43.31 3.57
2871 3012 7.324856 GTCGTCTTAGATTCGTCTAGATACGTA 59.675 40.741 0.00 0.00 43.31 3.57
2872 3013 8.026026 TCGTCTTAGATTCGTCTAGATACGTAT 58.974 37.037 8.05 8.05 43.31 3.06
2873 3014 8.103320 CGTCTTAGATTCGTCTAGATACGTATG 58.897 40.741 13.97 0.00 43.31 2.39
2874 3015 7.899330 GTCTTAGATTCGTCTAGATACGTATGC 59.101 40.741 13.97 4.92 43.31 3.14
2875 3016 7.601508 TCTTAGATTCGTCTAGATACGTATGCA 59.398 37.037 13.97 0.00 43.31 3.96
2876 3017 6.745159 AGATTCGTCTAGATACGTATGCAT 57.255 37.500 13.97 3.79 43.31 3.96
2877 3018 6.777101 AGATTCGTCTAGATACGTATGCATC 58.223 40.000 13.97 0.00 43.31 3.91
2878 3019 5.934935 TTCGTCTAGATACGTATGCATCA 57.065 39.130 13.97 0.00 43.31 3.07
2879 3020 5.532025 TCGTCTAGATACGTATGCATCAG 57.468 43.478 13.97 0.30 43.31 2.90
2880 3021 5.235516 TCGTCTAGATACGTATGCATCAGA 58.764 41.667 13.97 5.12 43.31 3.27
2881 3022 5.120363 TCGTCTAGATACGTATGCATCAGAC 59.880 44.000 13.97 14.74 43.31 3.51
2882 3023 5.107065 CGTCTAGATACGTATGCATCAGACA 60.107 44.000 13.97 0.00 38.07 3.41
2883 3024 6.081049 GTCTAGATACGTATGCATCAGACAC 58.919 44.000 13.97 0.00 33.84 3.67
2884 3025 3.890128 AGATACGTATGCATCAGACACG 58.110 45.455 13.97 15.49 38.52 4.49
2885 3026 3.315470 AGATACGTATGCATCAGACACGT 59.685 43.478 23.47 23.47 46.49 4.49
2886 3027 2.363788 ACGTATGCATCAGACACGTT 57.636 45.000 16.68 4.14 42.69 3.99
2887 3028 2.683968 ACGTATGCATCAGACACGTTT 58.316 42.857 16.68 0.00 42.69 3.60
2888 3029 3.064207 ACGTATGCATCAGACACGTTTT 58.936 40.909 16.68 0.00 42.69 2.43
2889 3030 4.239304 ACGTATGCATCAGACACGTTTTA 58.761 39.130 16.68 0.00 42.69 1.52
2890 3031 4.326278 ACGTATGCATCAGACACGTTTTAG 59.674 41.667 16.68 0.00 42.69 1.85
2891 3032 4.326278 CGTATGCATCAGACACGTTTTAGT 59.674 41.667 0.19 0.00 0.00 2.24
2892 3033 4.668576 ATGCATCAGACACGTTTTAGTG 57.331 40.909 0.00 0.00 46.83 2.74
2901 3042 2.741612 CACGTTTTAGTGTCGGGTACA 58.258 47.619 0.00 0.00 37.35 2.90
2902 3043 3.319755 CACGTTTTAGTGTCGGGTACAT 58.680 45.455 0.00 0.00 41.10 2.29
2903 3044 3.742369 CACGTTTTAGTGTCGGGTACATT 59.258 43.478 0.00 0.00 41.10 2.71
2904 3045 4.211794 CACGTTTTAGTGTCGGGTACATTT 59.788 41.667 0.00 0.00 41.10 2.32
2905 3046 4.211794 ACGTTTTAGTGTCGGGTACATTTG 59.788 41.667 0.00 0.00 41.10 2.32
2906 3047 4.211794 CGTTTTAGTGTCGGGTACATTTGT 59.788 41.667 0.00 0.00 41.10 2.83
2907 3048 5.404968 CGTTTTAGTGTCGGGTACATTTGTA 59.595 40.000 0.00 0.00 41.10 2.41
2908 3049 6.091169 CGTTTTAGTGTCGGGTACATTTGTAT 59.909 38.462 0.00 0.00 41.10 2.29
2909 3050 7.458677 GTTTTAGTGTCGGGTACATTTGTATC 58.541 38.462 0.00 0.00 41.10 2.24
2910 3051 6.534475 TTAGTGTCGGGTACATTTGTATCT 57.466 37.500 0.00 0.00 41.10 1.98
2911 3052 7.643569 TTAGTGTCGGGTACATTTGTATCTA 57.356 36.000 0.00 0.00 41.10 1.98
2912 3053 6.145338 AGTGTCGGGTACATTTGTATCTAG 57.855 41.667 0.00 0.00 41.10 2.43
2913 3054 5.889853 AGTGTCGGGTACATTTGTATCTAGA 59.110 40.000 0.00 0.00 41.10 2.43
2914 3055 5.975939 GTGTCGGGTACATTTGTATCTAGAC 59.024 44.000 16.09 16.09 41.10 2.59
2915 3056 5.653330 TGTCGGGTACATTTGTATCTAGACA 59.347 40.000 19.10 19.10 41.64 3.41
2916 3057 6.153170 TGTCGGGTACATTTGTATCTAGACAA 59.847 38.462 19.95 0.00 41.33 3.18
2942 3083 6.239396 TCTAAAACAACATATTTGGGACGGA 58.761 36.000 0.00 0.00 0.00 4.69
2952 3093 4.519906 ATTTGGGACGGAGGTAATTGAT 57.480 40.909 0.00 0.00 0.00 2.57
2994 3135 2.799126 TTGTTGTCACCACAGGAGTT 57.201 45.000 0.00 0.00 32.71 3.01
2997 3140 1.940613 GTTGTCACCACAGGAGTTCAC 59.059 52.381 0.00 0.00 32.71 3.18
3003 3146 3.945285 TCACCACAGGAGTTCACTTTTTC 59.055 43.478 0.00 0.00 0.00 2.29
3010 3153 7.363431 CACAGGAGTTCACTTTTTCCTTATTC 58.637 38.462 0.00 0.00 37.97 1.75
3072 3369 6.096036 TGTTTCATACTTTTTGTGTGTGTGG 58.904 36.000 0.00 0.00 38.65 4.17
3129 3426 6.465948 TGATGCATGCAAAATAAAAGGTTCT 58.534 32.000 26.68 1.78 0.00 3.01
3136 3433 9.868389 CATGCAAAATAAAAGGTTCTTTTTCTC 57.132 29.630 10.34 0.00 32.79 2.87
3173 3470 3.996363 TGTCAGTTGATCAGAACCAATCG 59.004 43.478 0.00 0.00 0.00 3.34
3202 3499 2.473768 TCCATTGCTGGAGGTGGAA 58.526 52.632 3.51 0.00 46.95 3.53
3211 3508 4.252493 GAGGTGGAAACCCTCCCT 57.748 61.111 0.00 0.00 44.69 4.20
3212 3509 1.992037 GAGGTGGAAACCCTCCCTC 59.008 63.158 0.00 0.00 44.69 4.30
3213 3510 1.541620 AGGTGGAAACCCTCCCTCC 60.542 63.158 0.00 0.00 44.69 4.30
3214 3511 2.669240 GTGGAAACCCTCCCTCCG 59.331 66.667 0.00 0.00 44.69 4.63
3234 3531 0.674269 GCTTCAGCTCAGCTCTGCTT 60.674 55.000 0.00 0.00 36.40 3.91
3236 3533 2.934364 GCTTCAGCTCAGCTCTGCTTAA 60.934 50.000 0.00 5.76 36.40 1.85
3237 3534 3.533547 CTTCAGCTCAGCTCTGCTTAAT 58.466 45.455 0.00 0.00 36.40 1.40
3240 3537 1.209990 AGCTCAGCTCTGCTTAATGCT 59.790 47.619 0.00 0.00 36.40 3.79
3242 3539 2.211806 CTCAGCTCTGCTTAATGCTCC 58.788 52.381 0.00 0.00 43.37 4.70
3244 3541 0.914644 AGCTCTGCTTAATGCTCCCA 59.085 50.000 0.00 0.00 43.37 4.37
3247 3544 0.107703 TCTGCTTAATGCTCCCACCG 60.108 55.000 0.00 0.00 43.37 4.94
3249 3546 2.481471 GCTTAATGCTCCCACCGGC 61.481 63.158 0.00 0.00 38.95 6.13
3250 3547 1.077787 CTTAATGCTCCCACCGGCA 60.078 57.895 0.00 0.00 42.80 5.69
3251 3548 1.077787 TTAATGCTCCCACCGGCAG 60.078 57.895 0.00 0.00 41.88 4.85
3276 3573 2.506438 CGGTCGCCGGAGAAGAAC 60.506 66.667 10.32 1.80 44.15 3.01
3277 3574 2.125633 GGTCGCCGGAGAAGAACC 60.126 66.667 10.32 3.37 0.00 3.62
3280 3577 1.987855 TCGCCGGAGAAGAACCCAT 60.988 57.895 5.05 0.00 0.00 4.00
3281 3578 1.078426 CGCCGGAGAAGAACCCATT 60.078 57.895 5.05 0.00 0.00 3.16
3282 3579 0.676782 CGCCGGAGAAGAACCCATTT 60.677 55.000 5.05 0.00 0.00 2.32
3283 3580 1.545841 GCCGGAGAAGAACCCATTTT 58.454 50.000 5.05 0.00 0.00 1.82
3284 3581 1.893137 GCCGGAGAAGAACCCATTTTT 59.107 47.619 5.05 0.00 0.00 1.94
3305 5268 0.035152 TAGGTGTCGCCGGAGACTAA 60.035 55.000 33.69 16.21 43.70 2.24
3307 5270 1.153881 GTGTCGCCGGAGACTAACC 60.154 63.158 33.69 17.85 41.47 2.85
3325 5288 2.125106 GAGGCGGCCTCGTTCATT 60.125 61.111 31.44 2.62 41.08 2.57
3331 5306 1.425428 GGCCTCGTTCATTTCGCTG 59.575 57.895 0.00 0.00 0.00 5.18
3374 5349 3.753434 AGCCCACGAGTCGCTCAG 61.753 66.667 13.59 0.00 0.00 3.35
3412 5388 3.365265 CCAAAGCCCACCACGCTC 61.365 66.667 0.00 0.00 34.84 5.03
3546 5522 2.900273 CTCGGATGGCGGGAGAAA 59.100 61.111 0.00 0.00 0.00 2.52
3719 5696 0.800631 CCGCCGGTAAAAGAAAGACC 59.199 55.000 1.90 0.00 0.00 3.85
3722 5699 1.445871 CCGGTAAAAGAAAGACCCCG 58.554 55.000 0.00 0.00 0.00 5.73
3723 5700 0.800631 CGGTAAAAGAAAGACCCCGC 59.199 55.000 0.00 0.00 0.00 6.13
3731 5708 0.322187 GAAAGACCCCGCCTTTGCTA 60.322 55.000 0.00 0.00 34.33 3.49
3737 5714 4.778143 CCGCCTTTGCTACGCCCT 62.778 66.667 0.00 0.00 34.43 5.19
3738 5715 3.195698 CGCCTTTGCTACGCCCTC 61.196 66.667 0.00 0.00 34.43 4.30
3739 5716 2.269241 GCCTTTGCTACGCCCTCT 59.731 61.111 0.00 0.00 33.53 3.69
3740 5717 1.377333 GCCTTTGCTACGCCCTCTT 60.377 57.895 0.00 0.00 33.53 2.85
3741 5718 0.960861 GCCTTTGCTACGCCCTCTTT 60.961 55.000 0.00 0.00 33.53 2.52
3742 5719 1.677820 GCCTTTGCTACGCCCTCTTTA 60.678 52.381 0.00 0.00 33.53 1.85
3743 5720 2.007608 CCTTTGCTACGCCCTCTTTAC 58.992 52.381 0.00 0.00 0.00 2.01
3746 5723 1.263356 TGCTACGCCCTCTTTACTGT 58.737 50.000 0.00 0.00 0.00 3.55
3754 5731 3.194116 CGCCCTCTTTACTGTTGTACCTA 59.806 47.826 0.00 0.00 0.00 3.08
3788 5765 5.269505 GCTTAGAGCTCTGTTCTATTGGA 57.730 43.478 26.78 0.00 38.45 3.53
3789 5766 5.852827 GCTTAGAGCTCTGTTCTATTGGAT 58.147 41.667 26.78 0.00 38.45 3.41
3790 5767 6.987386 GCTTAGAGCTCTGTTCTATTGGATA 58.013 40.000 26.78 0.00 38.45 2.59
3791 5768 6.866248 GCTTAGAGCTCTGTTCTATTGGATAC 59.134 42.308 26.78 0.00 38.45 2.24
3792 5769 7.470702 GCTTAGAGCTCTGTTCTATTGGATACA 60.471 40.741 26.78 0.00 41.72 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.419204 ACGTATTTTGAAATTTGAAACGGAGA 58.581 30.769 14.56 0.00 32.57 3.71
2 3 7.988904 AACGTATTTTGAAATTTGAAACGGA 57.011 28.000 14.56 0.00 32.57 4.69
22 23 9.804758 TCCAAAGTTGTATCAAATTTAAAACGT 57.195 25.926 7.41 0.00 0.00 3.99
51 52 7.871463 CGTCCCTTCCGATTCTATACTAATTTT 59.129 37.037 0.00 0.00 0.00 1.82
52 53 7.376615 CGTCCCTTCCGATTCTATACTAATTT 58.623 38.462 0.00 0.00 0.00 1.82
53 54 6.071503 CCGTCCCTTCCGATTCTATACTAATT 60.072 42.308 0.00 0.00 0.00 1.40
54 55 5.418209 CCGTCCCTTCCGATTCTATACTAAT 59.582 44.000 0.00 0.00 0.00 1.73
55 56 4.763793 CCGTCCCTTCCGATTCTATACTAA 59.236 45.833 0.00 0.00 0.00 2.24
56 57 4.042062 TCCGTCCCTTCCGATTCTATACTA 59.958 45.833 0.00 0.00 0.00 1.82
57 58 3.155501 CCGTCCCTTCCGATTCTATACT 58.844 50.000 0.00 0.00 0.00 2.12
58 59 3.152341 TCCGTCCCTTCCGATTCTATAC 58.848 50.000 0.00 0.00 0.00 1.47
59 60 3.073503 TCTCCGTCCCTTCCGATTCTATA 59.926 47.826 0.00 0.00 0.00 1.31
60 61 2.158505 TCTCCGTCCCTTCCGATTCTAT 60.159 50.000 0.00 0.00 0.00 1.98
61 62 1.213678 TCTCCGTCCCTTCCGATTCTA 59.786 52.381 0.00 0.00 0.00 2.10
62 63 0.033405 TCTCCGTCCCTTCCGATTCT 60.033 55.000 0.00 0.00 0.00 2.40
63 64 0.386113 CTCTCCGTCCCTTCCGATTC 59.614 60.000 0.00 0.00 0.00 2.52
64 65 0.033405 TCTCTCCGTCCCTTCCGATT 60.033 55.000 0.00 0.00 0.00 3.34
65 66 0.466555 CTCTCTCCGTCCCTTCCGAT 60.467 60.000 0.00 0.00 0.00 4.18
66 67 1.077644 CTCTCTCCGTCCCTTCCGA 60.078 63.158 0.00 0.00 0.00 4.55
67 68 0.107312 TACTCTCTCCGTCCCTTCCG 60.107 60.000 0.00 0.00 0.00 4.30
68 69 1.682740 CTACTCTCTCCGTCCCTTCC 58.317 60.000 0.00 0.00 0.00 3.46
69 70 1.026584 GCTACTCTCTCCGTCCCTTC 58.973 60.000 0.00 0.00 0.00 3.46
70 71 0.331954 TGCTACTCTCTCCGTCCCTT 59.668 55.000 0.00 0.00 0.00 3.95
71 72 0.106918 CTGCTACTCTCTCCGTCCCT 60.107 60.000 0.00 0.00 0.00 4.20
72 73 0.394625 ACTGCTACTCTCTCCGTCCC 60.395 60.000 0.00 0.00 0.00 4.46
73 74 2.158928 TCTACTGCTACTCTCTCCGTCC 60.159 54.545 0.00 0.00 0.00 4.79
74 75 3.182341 TCTACTGCTACTCTCTCCGTC 57.818 52.381 0.00 0.00 0.00 4.79
75 76 3.272581 GTTCTACTGCTACTCTCTCCGT 58.727 50.000 0.00 0.00 0.00 4.69
76 77 2.285756 CGTTCTACTGCTACTCTCTCCG 59.714 54.545 0.00 0.00 0.00 4.63
77 78 2.614983 CCGTTCTACTGCTACTCTCTCC 59.385 54.545 0.00 0.00 0.00 3.71
78 79 3.310501 GTCCGTTCTACTGCTACTCTCTC 59.689 52.174 0.00 0.00 0.00 3.20
79 80 3.272581 GTCCGTTCTACTGCTACTCTCT 58.727 50.000 0.00 0.00 0.00 3.10
80 81 2.030701 CGTCCGTTCTACTGCTACTCTC 59.969 54.545 0.00 0.00 0.00 3.20
81 82 2.008329 CGTCCGTTCTACTGCTACTCT 58.992 52.381 0.00 0.00 0.00 3.24
82 83 1.531470 GCGTCCGTTCTACTGCTACTC 60.531 57.143 0.00 0.00 0.00 2.59
83 84 0.450983 GCGTCCGTTCTACTGCTACT 59.549 55.000 0.00 0.00 0.00 2.57
84 85 0.450983 AGCGTCCGTTCTACTGCTAC 59.549 55.000 0.00 0.00 0.00 3.58
85 86 1.131883 GAAGCGTCCGTTCTACTGCTA 59.868 52.381 0.00 0.00 31.41 3.49
86 87 0.109226 GAAGCGTCCGTTCTACTGCT 60.109 55.000 0.00 0.00 0.00 4.24
87 88 1.077089 GGAAGCGTCCGTTCTACTGC 61.077 60.000 1.94 0.00 33.05 4.40
88 89 3.031660 GGAAGCGTCCGTTCTACTG 57.968 57.895 1.94 0.00 33.05 2.74
97 98 1.067821 CTGTATCTGGAGGAAGCGTCC 59.932 57.143 11.15 11.15 45.35 4.79
98 99 2.025155 TCTGTATCTGGAGGAAGCGTC 58.975 52.381 0.00 0.00 0.00 5.19
99 100 2.145397 TCTGTATCTGGAGGAAGCGT 57.855 50.000 0.00 0.00 0.00 5.07
100 101 3.570125 TGTATCTGTATCTGGAGGAAGCG 59.430 47.826 0.00 0.00 0.00 4.68
101 102 4.021544 CCTGTATCTGTATCTGGAGGAAGC 60.022 50.000 0.00 0.00 0.00 3.86
102 103 4.526262 CCCTGTATCTGTATCTGGAGGAAG 59.474 50.000 0.00 0.00 0.00 3.46
103 104 4.483950 CCCTGTATCTGTATCTGGAGGAA 58.516 47.826 0.00 0.00 0.00 3.36
104 105 3.755483 GCCCTGTATCTGTATCTGGAGGA 60.755 52.174 0.00 0.00 0.00 3.71
105 106 2.564947 GCCCTGTATCTGTATCTGGAGG 59.435 54.545 0.00 0.00 0.00 4.30
106 107 3.234353 TGCCCTGTATCTGTATCTGGAG 58.766 50.000 0.00 0.00 0.00 3.86
107 108 3.234353 CTGCCCTGTATCTGTATCTGGA 58.766 50.000 0.00 0.00 0.00 3.86
108 109 2.289320 GCTGCCCTGTATCTGTATCTGG 60.289 54.545 0.00 0.00 0.00 3.86
109 110 2.289320 GGCTGCCCTGTATCTGTATCTG 60.289 54.545 7.66 0.00 0.00 2.90
110 111 1.974236 GGCTGCCCTGTATCTGTATCT 59.026 52.381 7.66 0.00 0.00 1.98
111 112 1.974236 AGGCTGCCCTGTATCTGTATC 59.026 52.381 16.57 0.00 40.94 2.24
112 113 2.109229 AGGCTGCCCTGTATCTGTAT 57.891 50.000 16.57 0.00 40.94 2.29
113 114 3.635099 AGGCTGCCCTGTATCTGTA 57.365 52.632 16.57 0.00 40.94 2.74
114 115 4.488303 AGGCTGCCCTGTATCTGT 57.512 55.556 16.57 0.00 40.94 3.41
126 127 2.750637 CTGGAGCTTGGCAGGCTG 60.751 66.667 29.78 11.01 40.40 4.85
127 128 4.737177 GCTGGAGCTTGGCAGGCT 62.737 66.667 25.14 25.14 43.26 4.58
132 133 4.096003 TACCCGCTGGAGCTTGGC 62.096 66.667 0.00 0.00 39.32 4.52
133 134 2.125106 GTACCCGCTGGAGCTTGG 60.125 66.667 0.00 0.13 39.32 3.61
134 135 1.448540 CTGTACCCGCTGGAGCTTG 60.449 63.158 0.00 0.00 39.32 4.01
135 136 0.613853 TACTGTACCCGCTGGAGCTT 60.614 55.000 0.00 0.00 39.32 3.74
136 137 1.000019 TACTGTACCCGCTGGAGCT 60.000 57.895 0.00 0.00 39.32 4.09
137 138 1.141234 GTACTGTACCCGCTGGAGC 59.859 63.158 6.70 0.00 34.81 4.70
138 139 1.432251 CGTACTGTACCCGCTGGAG 59.568 63.158 12.08 0.00 34.81 3.86
139 140 2.703798 GCGTACTGTACCCGCTGGA 61.704 63.158 12.08 0.00 43.81 3.86
140 141 2.202703 GCGTACTGTACCCGCTGG 60.203 66.667 12.08 0.00 43.81 4.85
144 145 2.406401 CCGAGCGTACTGTACCCG 59.594 66.667 12.08 12.15 0.00 5.28
145 146 2.103736 GCCGAGCGTACTGTACCC 59.896 66.667 12.08 3.48 0.00 3.69
146 147 1.063811 GAGCCGAGCGTACTGTACC 59.936 63.158 12.08 5.53 0.00 3.34
147 148 1.297451 CGAGCCGAGCGTACTGTAC 60.297 63.158 7.90 7.90 0.00 2.90
148 149 1.742880 ACGAGCCGAGCGTACTGTA 60.743 57.895 1.50 0.00 40.65 2.74
149 150 3.054503 ACGAGCCGAGCGTACTGT 61.055 61.111 1.50 0.00 40.65 3.55
150 151 2.577112 CACGAGCCGAGCGTACTG 60.577 66.667 1.50 0.00 40.44 2.74
151 152 4.477975 GCACGAGCCGAGCGTACT 62.478 66.667 0.00 0.00 40.44 2.73
171 172 2.088950 TTCCTTTTCGGAAGCTACCG 57.911 50.000 0.00 0.00 46.80 4.02
179 180 0.948678 CACCGCTTTTCCTTTTCGGA 59.051 50.000 5.96 0.00 42.43 4.55
180 181 0.039527 CCACCGCTTTTCCTTTTCGG 60.040 55.000 0.00 0.00 45.04 4.30
181 182 0.663269 GCCACCGCTTTTCCTTTTCG 60.663 55.000 0.00 0.00 0.00 3.46
182 183 0.663269 CGCCACCGCTTTTCCTTTTC 60.663 55.000 0.00 0.00 0.00 2.29
183 184 1.362355 CGCCACCGCTTTTCCTTTT 59.638 52.632 0.00 0.00 0.00 2.27
184 185 1.826487 ACGCCACCGCTTTTCCTTT 60.826 52.632 0.00 0.00 38.22 3.11
185 186 2.203294 ACGCCACCGCTTTTCCTT 60.203 55.556 0.00 0.00 38.22 3.36
186 187 2.978010 CACGCCACCGCTTTTCCT 60.978 61.111 0.00 0.00 38.22 3.36
187 188 3.284449 ACACGCCACCGCTTTTCC 61.284 61.111 0.00 0.00 38.22 3.13
188 189 2.051345 CACACGCCACCGCTTTTC 60.051 61.111 0.00 0.00 38.22 2.29
189 190 2.515057 TCACACGCCACCGCTTTT 60.515 55.556 0.00 0.00 38.22 2.27
190 191 3.276846 GTCACACGCCACCGCTTT 61.277 61.111 0.00 0.00 38.22 3.51
201 202 1.890510 GGTTGGTCCGTGGTCACAC 60.891 63.158 1.90 0.00 44.23 3.82
202 203 2.035237 GAGGTTGGTCCGTGGTCACA 62.035 60.000 1.90 0.00 41.99 3.58
203 204 1.301479 GAGGTTGGTCCGTGGTCAC 60.301 63.158 0.00 0.00 41.99 3.67
204 205 1.338890 TTGAGGTTGGTCCGTGGTCA 61.339 55.000 0.00 0.00 41.99 4.02
205 206 0.883370 GTTGAGGTTGGTCCGTGGTC 60.883 60.000 0.00 0.00 41.99 4.02
206 207 1.147600 GTTGAGGTTGGTCCGTGGT 59.852 57.895 0.00 0.00 41.99 4.16
207 208 1.599797 GGTTGAGGTTGGTCCGTGG 60.600 63.158 0.00 0.00 41.99 4.94
208 209 0.602905 GAGGTTGAGGTTGGTCCGTG 60.603 60.000 0.00 0.00 41.99 4.94
209 210 1.752833 GAGGTTGAGGTTGGTCCGT 59.247 57.895 0.00 0.00 41.99 4.69
210 211 1.374252 CGAGGTTGAGGTTGGTCCG 60.374 63.158 0.00 0.00 41.99 4.79
211 212 1.003718 CCGAGGTTGAGGTTGGTCC 60.004 63.158 0.00 0.00 0.00 4.46
212 213 1.671379 GCCGAGGTTGAGGTTGGTC 60.671 63.158 0.00 0.00 0.00 4.02
213 214 1.990160 TTGCCGAGGTTGAGGTTGGT 61.990 55.000 0.00 0.00 0.00 3.67
214 215 0.821711 TTTGCCGAGGTTGAGGTTGG 60.822 55.000 0.00 0.00 0.00 3.77
215 216 1.028905 TTTTGCCGAGGTTGAGGTTG 58.971 50.000 0.00 0.00 0.00 3.77
216 217 1.886542 GATTTTGCCGAGGTTGAGGTT 59.113 47.619 0.00 0.00 0.00 3.50
217 218 1.534729 GATTTTGCCGAGGTTGAGGT 58.465 50.000 0.00 0.00 0.00 3.85
218 219 0.447801 CGATTTTGCCGAGGTTGAGG 59.552 55.000 0.00 0.00 0.00 3.86
219 220 1.128692 GTCGATTTTGCCGAGGTTGAG 59.871 52.381 0.00 0.00 36.66 3.02
220 221 1.153353 GTCGATTTTGCCGAGGTTGA 58.847 50.000 0.00 0.00 36.66 3.18
221 222 0.871722 TGTCGATTTTGCCGAGGTTG 59.128 50.000 0.00 0.00 36.66 3.77
222 223 1.600023 TTGTCGATTTTGCCGAGGTT 58.400 45.000 0.00 0.00 36.66 3.50
223 224 1.600023 TTTGTCGATTTTGCCGAGGT 58.400 45.000 0.00 0.00 36.66 3.85
224 225 2.919666 ATTTGTCGATTTTGCCGAGG 57.080 45.000 0.00 0.00 36.66 4.63
225 226 4.088496 GTCAAATTTGTCGATTTTGCCGAG 59.912 41.667 17.47 0.00 36.66 4.63
226 227 3.978217 GTCAAATTTGTCGATTTTGCCGA 59.022 39.130 17.47 0.00 31.71 5.54
251 252 7.033185 TCATTCTGTGATTTGATTTCATGCAG 58.967 34.615 0.00 0.00 0.00 4.41
254 255 8.860128 CAGTTCATTCTGTGATTTGATTTCATG 58.140 33.333 0.00 0.00 36.54 3.07
307 308 0.462225 TCGGGCGTCACACAAAAAGA 60.462 50.000 0.00 0.00 0.00 2.52
327 328 4.643334 ACAGTATAGTGTGACGCCTTCATA 59.357 41.667 12.50 0.00 36.32 2.15
329 330 2.823747 ACAGTATAGTGTGACGCCTTCA 59.176 45.455 12.50 0.00 0.00 3.02
441 442 2.104967 ACTGTATAGTGTGGCGCCTAA 58.895 47.619 29.70 13.28 35.34 2.69
647 648 1.227943 ACTGTGCAACGCCTCACAT 60.228 52.632 4.97 0.00 41.69 3.21
762 764 8.567104 GTTGAGGGCAAATTTGACAAATTTAAT 58.433 29.630 29.34 18.82 46.34 1.40
786 788 2.043252 AGGAGTACTGTAGGCTGAGGTT 59.957 50.000 0.00 0.00 0.00 3.50
787 789 1.641714 AGGAGTACTGTAGGCTGAGGT 59.358 52.381 0.00 0.00 0.00 3.85
788 790 2.028130 CAGGAGTACTGTAGGCTGAGG 58.972 57.143 0.00 0.00 42.42 3.86
838 840 0.533308 TGGACACAGGCGTTGTTACC 60.533 55.000 0.00 0.00 38.16 2.85
916 920 5.072741 CAGGGGGTGGACTGATTAATAATG 58.927 45.833 0.00 0.00 36.86 1.90
917 921 4.447762 GCAGGGGGTGGACTGATTAATAAT 60.448 45.833 0.00 0.00 36.86 1.28
918 922 3.117663 GCAGGGGGTGGACTGATTAATAA 60.118 47.826 0.00 0.00 36.86 1.40
959 969 3.330853 GCCGCCGATGACGATGAC 61.331 66.667 0.00 0.00 42.66 3.06
960 970 4.923710 CGCCGCCGATGACGATGA 62.924 66.667 0.00 0.00 42.66 2.92
1006 1022 0.898789 TCCTCCTTCTCCGTCACCAC 60.899 60.000 0.00 0.00 0.00 4.16
1010 1026 1.686428 CCATCTCCTCCTTCTCCGTCA 60.686 57.143 0.00 0.00 0.00 4.35
1019 1035 2.042537 TGCGCTCCATCTCCTCCT 60.043 61.111 9.73 0.00 0.00 3.69
1020 1036 2.420890 CTGCGCTCCATCTCCTCC 59.579 66.667 9.73 0.00 0.00 4.30
1021 1037 2.420890 CCTGCGCTCCATCTCCTC 59.579 66.667 9.73 0.00 0.00 3.71
1022 1038 3.160047 CCCTGCGCTCCATCTCCT 61.160 66.667 9.73 0.00 0.00 3.69
1203 1219 2.032071 GTGCTTACCAGGGCGTGT 59.968 61.111 6.43 0.00 0.00 4.49
1212 1228 4.484872 GGGAGGGCGGTGCTTACC 62.485 72.222 0.00 0.00 0.00 2.85
1224 1245 3.795924 AGGGATGGGGGAGGGAGG 61.796 72.222 0.00 0.00 0.00 4.30
1226 1247 4.172232 CGAGGGATGGGGGAGGGA 62.172 72.222 0.00 0.00 0.00 4.20
1293 1325 5.058490 GCAATGGATGGATTAATTTGGGTG 58.942 41.667 0.00 0.00 0.00 4.61
1294 1326 4.202243 CGCAATGGATGGATTAATTTGGGT 60.202 41.667 0.00 0.00 0.00 4.51
1295 1327 4.309099 CGCAATGGATGGATTAATTTGGG 58.691 43.478 0.00 0.00 0.00 4.12
1297 1329 3.742369 GGCGCAATGGATGGATTAATTTG 59.258 43.478 10.83 0.00 0.00 2.32
1298 1330 3.552684 CGGCGCAATGGATGGATTAATTT 60.553 43.478 10.83 0.00 0.00 1.82
1302 1334 1.514678 GCGGCGCAATGGATGGATTA 61.515 55.000 29.21 0.00 0.00 1.75
1327 1363 5.408604 GGTGCCACTATGTTCCTAATAATCG 59.591 44.000 0.00 0.00 0.00 3.34
1331 1367 4.141574 GGTGGTGCCACTATGTTCCTAATA 60.142 45.833 19.37 0.00 45.52 0.98
1334 1370 1.557832 GGTGGTGCCACTATGTTCCTA 59.442 52.381 19.37 0.00 45.52 2.94
1336 1372 0.037590 TGGTGGTGCCACTATGTTCC 59.962 55.000 19.37 3.44 43.61 3.62
1337 1373 3.642938 TGGTGGTGCCACTATGTTC 57.357 52.632 19.37 4.09 43.61 3.18
1346 1385 1.168714 GAACAGAGATTGGTGGTGCC 58.831 55.000 0.00 0.00 37.90 5.01
1415 1459 3.687102 CCTGCACACGGGTCGGTA 61.687 66.667 0.00 0.00 37.57 4.02
1584 1629 0.178816 TCTTTGGGGAATCTGGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
1588 1710 2.148446 TGCATCTTTGGGGAATCTGG 57.852 50.000 0.00 0.00 0.00 3.86
1594 1716 4.415596 ACAAAAGTATGCATCTTTGGGGA 58.584 39.130 22.66 0.00 35.65 4.81
1605 1727 5.499139 TGGCTAGCATTACAAAAGTATGC 57.501 39.130 18.24 0.00 38.43 3.14
1606 1728 7.263100 TGATGGCTAGCATTACAAAAGTATG 57.737 36.000 18.24 0.00 0.00 2.39
1609 1731 4.641989 CCTGATGGCTAGCATTACAAAAGT 59.358 41.667 18.24 0.00 0.00 2.66
1615 1737 2.551071 GGGACCTGATGGCTAGCATTAC 60.551 54.545 18.24 5.33 36.63 1.89
1616 1738 1.699634 GGGACCTGATGGCTAGCATTA 59.300 52.381 18.24 2.24 36.63 1.90
1619 1741 3.647367 GGGACCTGATGGCTAGCA 58.353 61.111 18.24 2.97 36.63 3.49
1633 1755 2.488836 GAATCTAAGGAAGGGTGGGGA 58.511 52.381 0.00 0.00 0.00 4.81
1634 1756 1.495148 GGAATCTAAGGAAGGGTGGGG 59.505 57.143 0.00 0.00 0.00 4.96
1635 1757 1.495148 GGGAATCTAAGGAAGGGTGGG 59.505 57.143 0.00 0.00 0.00 4.61
1636 1758 1.495148 GGGGAATCTAAGGAAGGGTGG 59.505 57.143 0.00 0.00 0.00 4.61
1637 1759 1.495148 GGGGGAATCTAAGGAAGGGTG 59.505 57.143 0.00 0.00 0.00 4.61
1638 1760 1.083912 TGGGGGAATCTAAGGAAGGGT 59.916 52.381 0.00 0.00 0.00 4.34
1639 1761 1.907240 TGGGGGAATCTAAGGAAGGG 58.093 55.000 0.00 0.00 0.00 3.95
1640 1762 4.542906 ATTTGGGGGAATCTAAGGAAGG 57.457 45.455 0.00 0.00 0.00 3.46
1641 1763 7.231519 GTGAATATTTGGGGGAATCTAAGGAAG 59.768 40.741 0.00 0.00 0.00 3.46
1642 1764 7.066781 GTGAATATTTGGGGGAATCTAAGGAA 58.933 38.462 0.00 0.00 0.00 3.36
1644 1766 6.372931 TGTGAATATTTGGGGGAATCTAAGG 58.627 40.000 0.00 0.00 0.00 2.69
1645 1767 7.896383 TTGTGAATATTTGGGGGAATCTAAG 57.104 36.000 0.00 0.00 0.00 2.18
1647 1769 6.782000 CCATTGTGAATATTTGGGGGAATCTA 59.218 38.462 0.00 0.00 0.00 1.98
1648 1770 5.603813 CCATTGTGAATATTTGGGGGAATCT 59.396 40.000 0.00 0.00 0.00 2.40
1649 1771 5.742838 GCCATTGTGAATATTTGGGGGAATC 60.743 44.000 5.48 0.00 0.00 2.52
1650 1772 4.102996 GCCATTGTGAATATTTGGGGGAAT 59.897 41.667 5.48 0.00 0.00 3.01
1652 1774 3.037549 GCCATTGTGAATATTTGGGGGA 58.962 45.455 5.48 0.00 0.00 4.81
1653 1775 2.104622 GGCCATTGTGAATATTTGGGGG 59.895 50.000 0.00 0.00 0.00 5.40
1654 1776 3.040477 AGGCCATTGTGAATATTTGGGG 58.960 45.455 5.01 0.00 0.00 4.96
1655 1777 4.262164 GCTAGGCCATTGTGAATATTTGGG 60.262 45.833 5.01 0.00 0.00 4.12
1656 1778 4.341806 TGCTAGGCCATTGTGAATATTTGG 59.658 41.667 5.01 0.00 0.00 3.28
1657 1779 5.518848 TGCTAGGCCATTGTGAATATTTG 57.481 39.130 5.01 0.00 0.00 2.32
1658 1780 5.599656 ACATGCTAGGCCATTGTGAATATTT 59.400 36.000 5.01 0.00 0.00 1.40
1659 1781 5.142639 ACATGCTAGGCCATTGTGAATATT 58.857 37.500 5.01 0.00 0.00 1.28
1660 1782 4.733165 ACATGCTAGGCCATTGTGAATAT 58.267 39.130 5.01 0.00 0.00 1.28
1661 1783 4.169059 ACATGCTAGGCCATTGTGAATA 57.831 40.909 5.01 0.00 0.00 1.75
1662 1784 3.022557 ACATGCTAGGCCATTGTGAAT 57.977 42.857 5.01 0.00 0.00 2.57
1663 1785 2.512692 ACATGCTAGGCCATTGTGAA 57.487 45.000 5.01 0.00 0.00 3.18
1664 1786 2.512692 AACATGCTAGGCCATTGTGA 57.487 45.000 5.01 0.00 0.00 3.58
1665 1787 3.598019 AAAACATGCTAGGCCATTGTG 57.402 42.857 5.01 0.00 0.00 3.33
1684 1806 8.405531 CACTACAGGTCTGATGAAAAAGAAAAA 58.594 33.333 4.84 0.00 0.00 1.94
1685 1807 7.468631 GCACTACAGGTCTGATGAAAAAGAAAA 60.469 37.037 4.84 0.00 0.00 2.29
1686 1808 6.017109 GCACTACAGGTCTGATGAAAAAGAAA 60.017 38.462 4.84 0.00 0.00 2.52
1687 1809 5.470098 GCACTACAGGTCTGATGAAAAAGAA 59.530 40.000 4.84 0.00 0.00 2.52
1688 1810 4.997395 GCACTACAGGTCTGATGAAAAAGA 59.003 41.667 4.84 0.00 0.00 2.52
1689 1811 4.999950 AGCACTACAGGTCTGATGAAAAAG 59.000 41.667 4.84 0.00 0.00 2.27
1690 1812 4.756642 CAGCACTACAGGTCTGATGAAAAA 59.243 41.667 4.84 0.00 0.00 1.94
1691 1813 4.318332 CAGCACTACAGGTCTGATGAAAA 58.682 43.478 4.84 0.00 0.00 2.29
1692 1814 3.306989 CCAGCACTACAGGTCTGATGAAA 60.307 47.826 4.84 0.00 0.00 2.69
1693 1815 2.234661 CCAGCACTACAGGTCTGATGAA 59.765 50.000 4.84 0.00 0.00 2.57
1694 1816 1.827344 CCAGCACTACAGGTCTGATGA 59.173 52.381 4.84 0.00 0.00 2.92
1695 1817 1.741732 GCCAGCACTACAGGTCTGATG 60.742 57.143 4.84 1.90 0.00 3.07
1696 1818 0.539051 GCCAGCACTACAGGTCTGAT 59.461 55.000 4.84 0.00 0.00 2.90
1697 1819 1.544825 GGCCAGCACTACAGGTCTGA 61.545 60.000 0.00 0.00 0.00 3.27
1698 1820 1.078848 GGCCAGCACTACAGGTCTG 60.079 63.158 0.00 0.00 0.00 3.51
1699 1821 0.041238 TAGGCCAGCACTACAGGTCT 59.959 55.000 5.01 0.00 43.38 3.85
1700 1822 0.461961 CTAGGCCAGCACTACAGGTC 59.538 60.000 5.01 0.00 0.00 3.85
1701 1823 2.596776 CTAGGCCAGCACTACAGGT 58.403 57.895 5.01 0.00 0.00 4.00
1714 1836 2.037251 TCTGAATAACGATGGGCTAGGC 59.963 50.000 8.00 8.00 0.00 3.93
1715 1837 3.322254 ACTCTGAATAACGATGGGCTAGG 59.678 47.826 0.00 0.00 0.00 3.02
1716 1838 4.592485 ACTCTGAATAACGATGGGCTAG 57.408 45.455 0.00 0.00 0.00 3.42
1717 1839 4.161565 ACAACTCTGAATAACGATGGGCTA 59.838 41.667 0.00 0.00 0.00 3.93
1718 1840 3.055094 ACAACTCTGAATAACGATGGGCT 60.055 43.478 0.00 0.00 0.00 5.19
1719 1841 3.270877 ACAACTCTGAATAACGATGGGC 58.729 45.455 0.00 0.00 0.00 5.36
1720 1842 4.695455 ACAACAACTCTGAATAACGATGGG 59.305 41.667 0.00 0.00 0.00 4.00
1721 1843 5.408299 TCACAACAACTCTGAATAACGATGG 59.592 40.000 0.00 0.00 0.00 3.51
1722 1844 6.466308 TCACAACAACTCTGAATAACGATG 57.534 37.500 0.00 0.00 0.00 3.84
1723 1845 5.120830 GCTCACAACAACTCTGAATAACGAT 59.879 40.000 0.00 0.00 0.00 3.73
1724 1846 4.447724 GCTCACAACAACTCTGAATAACGA 59.552 41.667 0.00 0.00 0.00 3.85
1725 1847 4.449068 AGCTCACAACAACTCTGAATAACG 59.551 41.667 0.00 0.00 0.00 3.18
1726 1848 5.237344 ACAGCTCACAACAACTCTGAATAAC 59.763 40.000 0.00 0.00 0.00 1.89
1727 1849 5.237127 CACAGCTCACAACAACTCTGAATAA 59.763 40.000 0.00 0.00 0.00 1.40
1728 1850 4.751600 CACAGCTCACAACAACTCTGAATA 59.248 41.667 0.00 0.00 0.00 1.75
1729 1851 3.562973 CACAGCTCACAACAACTCTGAAT 59.437 43.478 0.00 0.00 0.00 2.57
1730 1852 2.938451 CACAGCTCACAACAACTCTGAA 59.062 45.455 0.00 0.00 0.00 3.02
1731 1853 2.168313 TCACAGCTCACAACAACTCTGA 59.832 45.455 0.00 0.00 0.00 3.27
1732 1854 2.286294 GTCACAGCTCACAACAACTCTG 59.714 50.000 0.00 0.00 0.00 3.35
1733 1855 2.169352 AGTCACAGCTCACAACAACTCT 59.831 45.455 0.00 0.00 0.00 3.24
1734 1856 2.286294 CAGTCACAGCTCACAACAACTC 59.714 50.000 0.00 0.00 0.00 3.01
1735 1857 2.093500 TCAGTCACAGCTCACAACAACT 60.093 45.455 0.00 0.00 0.00 3.16
1736 1858 2.279741 TCAGTCACAGCTCACAACAAC 58.720 47.619 0.00 0.00 0.00 3.32
1737 1859 2.689553 TCAGTCACAGCTCACAACAA 57.310 45.000 0.00 0.00 0.00 2.83
1738 1860 2.486918 CATCAGTCACAGCTCACAACA 58.513 47.619 0.00 0.00 0.00 3.33
1739 1861 1.802960 CCATCAGTCACAGCTCACAAC 59.197 52.381 0.00 0.00 0.00 3.32
1740 1862 1.879372 GCCATCAGTCACAGCTCACAA 60.879 52.381 0.00 0.00 0.00 3.33
1741 1863 0.321034 GCCATCAGTCACAGCTCACA 60.321 55.000 0.00 0.00 0.00 3.58
1742 1864 0.036577 AGCCATCAGTCACAGCTCAC 60.037 55.000 0.00 0.00 0.00 3.51
1743 1865 2.369654 AGCCATCAGTCACAGCTCA 58.630 52.632 0.00 0.00 0.00 4.26
1744 1866 3.062585 GAGCCATCAGTCACAGCTC 57.937 57.895 0.00 0.00 42.74 4.09
1745 1867 0.249676 CAGAGCCATCAGTCACAGCT 59.750 55.000 0.00 0.00 36.25 4.24
1746 1868 0.036577 ACAGAGCCATCAGTCACAGC 60.037 55.000 0.00 0.00 0.00 4.40
1747 1869 2.469274 AACAGAGCCATCAGTCACAG 57.531 50.000 0.00 0.00 0.00 3.66
1748 1870 2.158769 ACAAACAGAGCCATCAGTCACA 60.159 45.455 0.00 0.00 0.00 3.58
1749 1871 2.498167 ACAAACAGAGCCATCAGTCAC 58.502 47.619 0.00 0.00 0.00 3.67
1750 1872 2.936919 ACAAACAGAGCCATCAGTCA 57.063 45.000 0.00 0.00 0.00 3.41
1751 1873 4.757149 AGTAAACAAACAGAGCCATCAGTC 59.243 41.667 0.00 0.00 0.00 3.51
1752 1874 4.718961 AGTAAACAAACAGAGCCATCAGT 58.281 39.130 0.00 0.00 0.00 3.41
1753 1875 4.999950 AGAGTAAACAAACAGAGCCATCAG 59.000 41.667 0.00 0.00 0.00 2.90
1754 1876 4.756642 CAGAGTAAACAAACAGAGCCATCA 59.243 41.667 0.00 0.00 0.00 3.07
1755 1877 4.378874 GCAGAGTAAACAAACAGAGCCATC 60.379 45.833 0.00 0.00 0.00 3.51
1756 1878 3.503748 GCAGAGTAAACAAACAGAGCCAT 59.496 43.478 0.00 0.00 0.00 4.40
1757 1879 2.878406 GCAGAGTAAACAAACAGAGCCA 59.122 45.455 0.00 0.00 0.00 4.75
1758 1880 2.226674 GGCAGAGTAAACAAACAGAGCC 59.773 50.000 0.00 0.00 0.00 4.70
1759 1881 2.096218 CGGCAGAGTAAACAAACAGAGC 60.096 50.000 0.00 0.00 0.00 4.09
1760 1882 3.184581 GTCGGCAGAGTAAACAAACAGAG 59.815 47.826 0.00 0.00 0.00 3.35
1761 1883 3.128349 GTCGGCAGAGTAAACAAACAGA 58.872 45.455 0.00 0.00 0.00 3.41
1762 1884 2.869801 TGTCGGCAGAGTAAACAAACAG 59.130 45.455 0.00 0.00 0.00 3.16
1763 1885 2.869801 CTGTCGGCAGAGTAAACAAACA 59.130 45.455 12.86 0.00 45.28 2.83
1764 1886 2.223377 CCTGTCGGCAGAGTAAACAAAC 59.777 50.000 20.91 0.00 45.28 2.93
1765 1887 2.489971 CCTGTCGGCAGAGTAAACAAA 58.510 47.619 20.91 0.00 45.28 2.83
1766 1888 2.163818 CCTGTCGGCAGAGTAAACAA 57.836 50.000 20.91 0.00 45.28 2.83
1767 1889 3.906660 CCTGTCGGCAGAGTAAACA 57.093 52.632 20.91 0.00 45.28 2.83
2049 2175 6.393171 GCTAAAATCCTGAGAAGCAAAACAT 58.607 36.000 0.00 0.00 0.00 2.71
2091 2217 0.998928 TGTACACTCCATGGCCCAAT 59.001 50.000 6.96 0.00 0.00 3.16
2092 2218 0.037590 GTGTACACTCCATGGCCCAA 59.962 55.000 18.92 0.00 0.00 4.12
2140 2266 3.473625 TCTCGGCGTAGATGAGATACAA 58.526 45.455 6.85 0.00 35.08 2.41
2219 2346 5.382618 ACATCAGAAAGATTGTTCAAGCC 57.617 39.130 0.00 0.00 33.72 4.35
2300 2427 5.529800 TGATATTATGAACTCGTCTCCGTCA 59.470 40.000 0.00 0.00 35.01 4.35
2348 2475 1.311859 CATTGTGGCCATCATACGCT 58.688 50.000 9.72 0.00 0.00 5.07
2389 2516 1.144936 ATAAGCCTGGCGAGCTCAC 59.855 57.895 15.40 3.30 40.49 3.51
2390 2517 1.144716 CATAAGCCTGGCGAGCTCA 59.855 57.895 15.40 0.00 40.49 4.26
2399 2526 6.317789 TCAAAGTTCTTGTTCATAAGCCTG 57.682 37.500 0.00 0.00 0.00 4.85
2413 2540 1.625818 ACCTCCGCAGATCAAAGTTCT 59.374 47.619 0.00 0.00 0.00 3.01
2452 2579 5.067283 GGTCTAACAAGGCTGTTTTCAAAGA 59.933 40.000 7.46 2.76 43.45 2.52
2456 2583 3.219281 GGGTCTAACAAGGCTGTTTTCA 58.781 45.455 7.46 0.00 43.45 2.69
2469 2596 9.555727 AACATACATATACAACATGGGTCTAAC 57.444 33.333 0.00 0.00 0.00 2.34
2482 2609 9.336171 TGCTGCAAAGATAAACATACATATACA 57.664 29.630 0.00 0.00 0.00 2.29
2483 2610 9.817365 CTGCTGCAAAGATAAACATACATATAC 57.183 33.333 3.02 0.00 0.00 1.47
2484 2611 9.559732 ACTGCTGCAAAGATAAACATACATATA 57.440 29.630 3.02 0.00 0.00 0.86
2524 2665 0.895100 AACCAATCGTGCACAGCCAT 60.895 50.000 18.64 0.00 0.00 4.40
2526 2667 1.081242 CAACCAATCGTGCACAGCC 60.081 57.895 18.64 0.00 0.00 4.85
2528 2669 0.386352 CTGCAACCAATCGTGCACAG 60.386 55.000 18.64 9.95 33.42 3.66
2529 2670 1.653667 CTGCAACCAATCGTGCACA 59.346 52.632 18.64 4.45 33.42 4.57
2543 2684 1.691434 GTCCCCAAACATTTTCCTGCA 59.309 47.619 0.00 0.00 0.00 4.41
2596 2737 1.284408 GATGCTCCTCGCTACCTCG 59.716 63.158 0.00 0.00 40.11 4.63
2623 2764 0.736325 CGCTTCCCGTGAACTTCGAT 60.736 55.000 0.00 0.00 0.00 3.59
2659 2800 4.077184 TCACCGTCCGGGCACATC 62.077 66.667 6.96 0.00 40.62 3.06
2660 2801 4.388499 GTCACCGTCCGGGCACAT 62.388 66.667 6.96 0.00 40.62 3.21
2668 2809 3.112709 GCTTGAGCGTCACCGTCC 61.113 66.667 0.00 0.00 36.15 4.79
2680 2821 1.274728 GTCTTCAGGAGCTCTGCTTGA 59.725 52.381 14.64 9.78 43.06 3.02
2683 2824 1.603236 CCGTCTTCAGGAGCTCTGCT 61.603 60.000 14.64 0.00 43.06 4.24
2755 2896 0.676151 CCAGCTCCTCCTTTGTCAGC 60.676 60.000 0.00 0.00 0.00 4.26
2778 2919 3.198872 GGCTACTGGTGACTTGATAAGC 58.801 50.000 0.00 0.00 0.00 3.09
2791 2932 3.634397 TGAGATCCTTTTGGCTACTGG 57.366 47.619 0.00 0.00 40.12 4.00
2847 2988 6.450845 ACGTATCTAGACGAATCTAAGACG 57.549 41.667 10.62 0.09 45.82 4.18
2854 2995 6.543736 TGATGCATACGTATCTAGACGAATC 58.456 40.000 4.74 3.92 45.82 2.52
2859 3000 6.081049 GTGTCTGATGCATACGTATCTAGAC 58.919 44.000 4.74 13.94 39.67 2.59
2860 3001 5.107065 CGTGTCTGATGCATACGTATCTAGA 60.107 44.000 4.74 0.00 35.45 2.43
2861 3002 5.082723 CGTGTCTGATGCATACGTATCTAG 58.917 45.833 4.74 0.00 35.45 2.43
2862 3003 4.514066 ACGTGTCTGATGCATACGTATCTA 59.486 41.667 19.95 0.00 44.93 1.98
2863 3004 3.315470 ACGTGTCTGATGCATACGTATCT 59.685 43.478 19.95 0.00 44.93 1.98
2864 3005 3.629058 ACGTGTCTGATGCATACGTATC 58.371 45.455 19.95 0.00 44.93 2.24
2865 3006 3.710326 ACGTGTCTGATGCATACGTAT 57.290 42.857 19.95 1.14 44.93 3.06
2866 3007 3.497297 AACGTGTCTGATGCATACGTA 57.503 42.857 21.21 0.00 45.88 3.57
2868 3009 3.722555 AAAACGTGTCTGATGCATACG 57.277 42.857 15.49 15.49 40.30 3.06
2869 3010 5.120208 ACACTAAAACGTGTCTGATGCATAC 59.880 40.000 0.00 0.00 44.32 2.39
2870 3011 5.234752 ACACTAAAACGTGTCTGATGCATA 58.765 37.500 0.00 0.00 44.32 3.14
2871 3012 4.065088 ACACTAAAACGTGTCTGATGCAT 58.935 39.130 0.00 0.00 44.32 3.96
2872 3013 3.462982 ACACTAAAACGTGTCTGATGCA 58.537 40.909 0.00 0.00 44.32 3.96
2881 3022 2.741612 TGTACCCGACACTAAAACGTG 58.258 47.619 0.00 0.00 40.67 4.49
2882 3023 3.665745 ATGTACCCGACACTAAAACGT 57.334 42.857 0.00 0.00 42.17 3.99
2883 3024 4.211794 ACAAATGTACCCGACACTAAAACG 59.788 41.667 0.00 0.00 42.17 3.60
2884 3025 5.678132 ACAAATGTACCCGACACTAAAAC 57.322 39.130 0.00 0.00 42.17 2.43
2885 3026 7.388437 AGATACAAATGTACCCGACACTAAAA 58.612 34.615 0.00 0.00 42.17 1.52
2886 3027 6.938507 AGATACAAATGTACCCGACACTAAA 58.061 36.000 0.00 0.00 42.17 1.85
2887 3028 6.534475 AGATACAAATGTACCCGACACTAA 57.466 37.500 0.00 0.00 42.17 2.24
2888 3029 7.012704 GTCTAGATACAAATGTACCCGACACTA 59.987 40.741 0.00 0.00 42.17 2.74
2889 3030 5.889853 TCTAGATACAAATGTACCCGACACT 59.110 40.000 0.00 0.00 42.17 3.55
2890 3031 5.975939 GTCTAGATACAAATGTACCCGACAC 59.024 44.000 0.00 0.00 42.17 3.67
2891 3032 5.653330 TGTCTAGATACAAATGTACCCGACA 59.347 40.000 0.00 0.30 43.97 4.35
2892 3033 6.140303 TGTCTAGATACAAATGTACCCGAC 57.860 41.667 0.00 0.00 32.72 4.79
2893 3034 6.778834 TTGTCTAGATACAAATGTACCCGA 57.221 37.500 0.00 0.00 36.45 5.14
2911 3052 9.927668 CCCAAATATGTTGTTTTAGATTTGTCT 57.072 29.630 0.00 0.00 34.13 3.41
2912 3053 9.921637 TCCCAAATATGTTGTTTTAGATTTGTC 57.078 29.630 0.00 0.00 34.13 3.18
2913 3054 9.705290 GTCCCAAATATGTTGTTTTAGATTTGT 57.295 29.630 0.00 0.00 34.13 2.83
2914 3055 8.859156 CGTCCCAAATATGTTGTTTTAGATTTG 58.141 33.333 0.00 0.00 35.19 2.32
2915 3056 8.032451 CCGTCCCAAATATGTTGTTTTAGATTT 58.968 33.333 0.00 0.00 0.00 2.17
2916 3057 7.394923 TCCGTCCCAAATATGTTGTTTTAGATT 59.605 33.333 0.00 0.00 0.00 2.40
2917 3058 6.887545 TCCGTCCCAAATATGTTGTTTTAGAT 59.112 34.615 0.00 0.00 0.00 1.98
2918 3059 6.239396 TCCGTCCCAAATATGTTGTTTTAGA 58.761 36.000 0.00 0.00 0.00 2.10
2919 3060 6.404293 CCTCCGTCCCAAATATGTTGTTTTAG 60.404 42.308 0.00 0.00 0.00 1.85
2920 3061 5.416326 CCTCCGTCCCAAATATGTTGTTTTA 59.584 40.000 0.00 0.00 0.00 1.52
2921 3062 4.219725 CCTCCGTCCCAAATATGTTGTTTT 59.780 41.667 0.00 0.00 0.00 2.43
2922 3063 3.761752 CCTCCGTCCCAAATATGTTGTTT 59.238 43.478 0.00 0.00 0.00 2.83
2923 3064 3.245122 ACCTCCGTCCCAAATATGTTGTT 60.245 43.478 0.00 0.00 0.00 2.83
2929 3070 5.640158 TCAATTACCTCCGTCCCAAATAT 57.360 39.130 0.00 0.00 0.00 1.28
2930 3071 5.640158 ATCAATTACCTCCGTCCCAAATA 57.360 39.130 0.00 0.00 0.00 1.40
2942 3083 6.429385 GCTTGCTATGCTCTTATCAATTACCT 59.571 38.462 0.00 0.00 0.00 3.08
2994 3135 5.987347 ACTCGAACGAATAAGGAAAAAGTGA 59.013 36.000 0.00 0.00 0.00 3.41
2997 3140 6.462073 TGACTCGAACGAATAAGGAAAAAG 57.538 37.500 0.00 0.00 0.00 2.27
3003 3146 4.421058 TGTGATGACTCGAACGAATAAGG 58.579 43.478 0.00 0.00 0.00 2.69
3010 3153 2.159379 TGATCCTGTGATGACTCGAACG 60.159 50.000 0.00 0.00 0.00 3.95
3072 3369 4.638304 ACATCAGTGTTACACTTACACCC 58.362 43.478 16.06 0.00 42.59 4.61
3129 3426 5.939883 ACAATGAGATCATCGGTGAGAAAAA 59.060 36.000 3.97 0.00 37.87 1.94
3136 3433 3.790091 ACTGACAATGAGATCATCGGTG 58.210 45.455 0.00 0.00 35.10 4.94
3173 3470 2.686915 CCAGCAATGGAGGAACAAGATC 59.313 50.000 0.00 0.00 0.00 2.75
3210 3507 2.511145 GCTGAGCTGAAGCCGGAG 60.511 66.667 5.05 0.00 43.38 4.63
3211 3508 2.999648 AGCTGAGCTGAAGCCGGA 61.000 61.111 5.97 0.00 41.82 5.14
3212 3509 2.511145 GAGCTGAGCTGAAGCCGG 60.511 66.667 13.71 0.00 39.88 6.13
3213 3510 1.810441 CAGAGCTGAGCTGAAGCCG 60.810 63.158 13.71 1.05 39.88 5.52
3214 3511 2.107903 GCAGAGCTGAGCTGAAGCC 61.108 63.158 13.71 0.00 39.88 4.35
3234 3531 2.589540 CTGCCGGTGGGAGCATTA 59.410 61.111 1.90 0.00 38.56 1.90
3261 3558 2.125633 GGGTTCTTCTCCGGCGAC 60.126 66.667 9.30 0.00 0.00 5.19
3263 3560 0.676782 AAATGGGTTCTTCTCCGGCG 60.677 55.000 0.00 0.00 0.00 6.46
3282 3579 0.680618 TCTCCGGCGACACCTAAAAA 59.319 50.000 9.30 0.00 35.61 1.94
3283 3580 0.037975 GTCTCCGGCGACACCTAAAA 60.038 55.000 19.57 0.00 35.61 1.52
3284 3581 0.896940 AGTCTCCGGCGACACCTAAA 60.897 55.000 25.55 0.00 36.38 1.85
3285 3582 0.035152 TAGTCTCCGGCGACACCTAA 60.035 55.000 25.55 3.72 36.38 2.69
3286 3583 0.035152 TTAGTCTCCGGCGACACCTA 60.035 55.000 25.55 7.58 36.38 3.08
3288 3585 1.153881 GTTAGTCTCCGGCGACACC 60.154 63.158 25.55 9.52 36.38 4.16
3289 3586 1.153881 GGTTAGTCTCCGGCGACAC 60.154 63.158 25.55 15.66 36.38 3.67
3290 3587 2.693762 CGGTTAGTCTCCGGCGACA 61.694 63.158 25.55 9.66 43.68 4.35
3292 3589 2.046023 TCGGTTAGTCTCCGGCGA 60.046 61.111 9.30 0.00 46.82 5.54
3293 3590 2.408022 CTCGGTTAGTCTCCGGCG 59.592 66.667 0.00 0.00 46.82 6.46
3294 3591 2.806237 CCTCGGTTAGTCTCCGGC 59.194 66.667 0.00 0.00 46.82 6.13
3295 3592 2.806237 GCCTCGGTTAGTCTCCGG 59.194 66.667 0.00 0.00 46.82 5.14
3297 3594 2.806237 CCGCCTCGGTTAGTCTCC 59.194 66.667 0.00 0.00 42.73 3.71
3314 5277 1.019278 TCCAGCGAAATGAACGAGGC 61.019 55.000 0.00 0.00 0.00 4.70
3317 5280 1.019278 GCCTCCAGCGAAATGAACGA 61.019 55.000 0.00 0.00 0.00 3.85
3318 5281 1.425428 GCCTCCAGCGAAATGAACG 59.575 57.895 0.00 0.00 0.00 3.95
3320 5283 1.378514 GGGCCTCCAGCGAAATGAA 60.379 57.895 0.84 0.00 45.17 2.57
3321 5284 2.272146 GGGCCTCCAGCGAAATGA 59.728 61.111 0.84 0.00 45.17 2.57
3323 5286 4.489771 CCGGGCCTCCAGCGAAAT 62.490 66.667 0.84 0.00 45.17 2.17
3387 5362 1.591327 GTGGGCTTTGGTTTGTGCG 60.591 57.895 0.00 0.00 0.00 5.34
3397 5373 3.553095 GAGGAGCGTGGTGGGCTTT 62.553 63.158 0.00 0.00 41.72 3.51
3412 5388 2.232298 GAAGACGCTGGAGTGGGAGG 62.232 65.000 0.00 0.00 0.00 4.30
3700 5676 0.800631 GGTCTTTCTTTTACCGGCGG 59.199 55.000 27.06 27.06 0.00 6.13
3731 5708 2.289257 GGTACAACAGTAAAGAGGGCGT 60.289 50.000 0.00 0.00 0.00 5.68
3736 5713 9.930693 AAATCTTCTAGGTACAACAGTAAAGAG 57.069 33.333 0.00 0.00 0.00 2.85
3740 5717 9.706691 CTGAAAATCTTCTAGGTACAACAGTAA 57.293 33.333 0.00 0.00 32.33 2.24
3741 5718 7.817962 GCTGAAAATCTTCTAGGTACAACAGTA 59.182 37.037 0.00 0.00 32.33 2.74
3742 5719 6.651225 GCTGAAAATCTTCTAGGTACAACAGT 59.349 38.462 0.00 0.00 32.33 3.55
3743 5720 6.876257 AGCTGAAAATCTTCTAGGTACAACAG 59.124 38.462 0.00 0.00 32.33 3.16
3746 5723 8.812972 TCTAAGCTGAAAATCTTCTAGGTACAA 58.187 33.333 0.00 0.00 32.33 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.