Multiple sequence alignment - TraesCS6D01G068700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G068700 chr6D 100.000 3663 0 0 1 3663 34500828 34504490 0.000000e+00 6765.0
1 TraesCS6D01G068700 chr6D 87.879 1155 101 18 1235 2371 34430690 34431823 0.000000e+00 1321.0
2 TraesCS6D01G068700 chr6D 79.840 1379 179 52 1161 2482 34508035 34509371 0.000000e+00 915.0
3 TraesCS6D01G068700 chr6D 81.250 112 12 3 2380 2482 34431873 34431984 8.430000e-12 82.4
4 TraesCS6D01G068700 chr6D 100.000 42 0 0 80 121 34500867 34500908 1.090000e-10 78.7
5 TraesCS6D01G068700 chr6D 100.000 42 0 0 40 81 34500907 34500948 1.090000e-10 78.7
6 TraesCS6D01G068700 chr6A 96.655 1405 33 5 1051 2443 38723527 38724929 0.000000e+00 2322.0
7 TraesCS6D01G068700 chr6A 91.645 1149 57 13 2523 3663 38724963 38726080 0.000000e+00 1554.0
8 TraesCS6D01G068700 chr6A 85.818 1375 119 23 1161 2482 38684509 38685860 0.000000e+00 1389.0
9 TraesCS6D01G068700 chr6A 82.344 1382 143 44 1161 2482 38741723 38743063 0.000000e+00 1107.0
10 TraesCS6D01G068700 chr6A 89.894 752 54 10 80 811 38719290 38720039 0.000000e+00 948.0
11 TraesCS6D01G068700 chr6A 81.918 730 99 19 80 783 16503838 16504560 1.470000e-163 586.0
12 TraesCS6D01G068700 chr6B 95.396 1325 48 6 1060 2379 71226492 71227808 0.000000e+00 2097.0
13 TraesCS6D01G068700 chr6B 87.948 1228 107 14 1161 2371 71197836 71199039 0.000000e+00 1410.0
14 TraesCS6D01G068700 chr6B 91.315 806 43 12 80 866 71225645 71226442 0.000000e+00 1075.0
15 TraesCS6D01G068700 chr6B 81.845 1355 145 43 1161 2455 71262071 71263384 0.000000e+00 1046.0
16 TraesCS6D01G068700 chr6B 88.110 656 49 16 2380 3033 71227846 71228474 0.000000e+00 752.0
17 TraesCS6D01G068700 chr6B 81.163 722 102 19 89 783 197795922 197795208 1.920000e-152 549.0
18 TraesCS6D01G068700 chr6B 96.296 81 3 0 1 81 71225606 71225686 2.290000e-27 134.0
19 TraesCS6D01G068700 chr6B 84.800 125 17 2 2822 2945 71263889 71264012 1.380000e-24 124.0
20 TraesCS6D01G068700 chr7B 80.742 836 97 26 1254 2080 592701588 592700808 8.760000e-166 593.0
21 TraesCS6D01G068700 chr7B 80.204 783 107 24 1176 1946 592777431 592776685 8.950000e-151 544.0
22 TraesCS6D01G068700 chr7B 79.741 232 39 7 3199 3426 212782307 212782534 1.050000e-35 161.0
23 TraesCS6D01G068700 chr7B 80.556 216 29 6 3230 3433 303164434 303164648 1.760000e-33 154.0
24 TraesCS6D01G068700 chr7B 94.595 37 2 0 2026 2062 592776626 592776590 1.420000e-04 58.4
25 TraesCS6D01G068700 chr7D 78.637 866 119 35 1224 2080 549128071 549127263 7.010000e-142 514.0
26 TraesCS6D01G068700 chr7D 78.509 228 40 6 3210 3428 213516479 213516706 1.370000e-29 141.0
27 TraesCS6D01G068700 chr7D 80.690 145 25 3 3492 3634 484359892 484359749 3.870000e-20 110.0
28 TraesCS6D01G068700 chr7D 77.778 180 30 8 3198 3369 510846240 510846063 6.470000e-18 102.0
29 TraesCS6D01G068700 chr7A 80.797 703 88 24 1254 1946 634455099 634454434 1.170000e-139 507.0
30 TraesCS6D01G068700 chr7A 78.617 622 105 23 180 783 210117095 210116484 1.600000e-103 387.0
31 TraesCS6D01G068700 chr7A 84.058 138 18 3 3498 3634 113489644 113489778 2.970000e-26 130.0
32 TraesCS6D01G068700 chr7A 81.818 143 24 2 3494 3634 552676936 552676794 6.430000e-23 119.0
33 TraesCS6D01G068700 chr7A 81.034 116 21 1 3489 3603 19184176 19184291 1.400000e-14 91.6
34 TraesCS6D01G068700 chr2B 78.549 634 108 23 168 783 172273041 172273664 3.430000e-105 392.0
35 TraesCS6D01G068700 chr2A 78.778 622 102 24 180 783 196050029 196049420 1.230000e-104 390.0
36 TraesCS6D01G068700 chr5B 78.233 634 110 23 168 783 652324754 652325377 7.420000e-102 381.0
37 TraesCS6D01G068700 chr5B 82.014 139 19 6 3203 3337 267109526 267109390 2.990000e-21 113.0
38 TraesCS6D01G068700 chr5B 87.805 82 8 1 2373 2454 494292863 494292942 1.080000e-15 95.3
39 TraesCS6D01G068700 chr5B 97.222 36 1 0 2447 2482 494294121 494294156 1.100000e-05 62.1
40 TraesCS6D01G068700 chr5A 78.233 634 110 23 168 783 92668064 92668687 7.420000e-102 381.0
41 TraesCS6D01G068700 chr5A 80.822 219 34 5 3199 3409 570472991 570472773 8.140000e-37 165.0
42 TraesCS6D01G068700 chr5A 85.211 142 19 2 3498 3637 178032250 178032391 1.060000e-30 145.0
43 TraesCS6D01G068700 chr2D 81.301 246 29 7 3199 3429 181304341 181304098 2.250000e-42 183.0
44 TraesCS6D01G068700 chr3D 80.753 239 33 8 3199 3426 158361955 158362191 1.350000e-39 174.0
45 TraesCS6D01G068700 chr3D 80.335 239 35 8 3198 3426 517889361 517889125 1.750000e-38 171.0
46 TraesCS6D01G068700 chr1B 77.586 232 46 6 3198 3424 458010514 458010744 6.380000e-28 135.0
47 TraesCS6D01G068700 chr4D 82.353 136 21 3 3502 3635 301245174 301245040 8.310000e-22 115.0
48 TraesCS6D01G068700 chr4D 81.752 137 24 1 3499 3634 333773172 333773308 2.990000e-21 113.0
49 TraesCS6D01G068700 chr5D 80.741 135 18 6 3201 3329 556155144 556155276 8.370000e-17 99.0
50 TraesCS6D01G068700 chr3B 75.105 237 45 9 3197 3428 117563243 117563016 8.370000e-17 99.0
51 TraesCS6D01G068700 chr1D 85.000 100 11 4 3528 3625 246059559 246059656 8.370000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G068700 chr6D 34500828 34504490 3662 False 2307.466667 6765 100.000000 1 3663 3 chr6D.!!$F3 3662
1 TraesCS6D01G068700 chr6D 34508035 34509371 1336 False 915.000000 915 79.840000 1161 2482 1 chr6D.!!$F1 1321
2 TraesCS6D01G068700 chr6D 34430690 34431984 1294 False 701.700000 1321 84.564500 1235 2482 2 chr6D.!!$F2 1247
3 TraesCS6D01G068700 chr6A 38719290 38726080 6790 False 1608.000000 2322 92.731333 80 3663 3 chr6A.!!$F4 3583
4 TraesCS6D01G068700 chr6A 38684509 38685860 1351 False 1389.000000 1389 85.818000 1161 2482 1 chr6A.!!$F2 1321
5 TraesCS6D01G068700 chr6A 38741723 38743063 1340 False 1107.000000 1107 82.344000 1161 2482 1 chr6A.!!$F3 1321
6 TraesCS6D01G068700 chr6A 16503838 16504560 722 False 586.000000 586 81.918000 80 783 1 chr6A.!!$F1 703
7 TraesCS6D01G068700 chr6B 71197836 71199039 1203 False 1410.000000 1410 87.948000 1161 2371 1 chr6B.!!$F1 1210
8 TraesCS6D01G068700 chr6B 71225606 71228474 2868 False 1014.500000 2097 92.779250 1 3033 4 chr6B.!!$F2 3032
9 TraesCS6D01G068700 chr6B 71262071 71264012 1941 False 585.000000 1046 83.322500 1161 2945 2 chr6B.!!$F3 1784
10 TraesCS6D01G068700 chr6B 197795208 197795922 714 True 549.000000 549 81.163000 89 783 1 chr6B.!!$R1 694
11 TraesCS6D01G068700 chr7B 592700808 592701588 780 True 593.000000 593 80.742000 1254 2080 1 chr7B.!!$R1 826
12 TraesCS6D01G068700 chr7B 592776590 592777431 841 True 301.200000 544 87.399500 1176 2062 2 chr7B.!!$R2 886
13 TraesCS6D01G068700 chr7D 549127263 549128071 808 True 514.000000 514 78.637000 1224 2080 1 chr7D.!!$R3 856
14 TraesCS6D01G068700 chr7A 634454434 634455099 665 True 507.000000 507 80.797000 1254 1946 1 chr7A.!!$R3 692
15 TraesCS6D01G068700 chr7A 210116484 210117095 611 True 387.000000 387 78.617000 180 783 1 chr7A.!!$R1 603
16 TraesCS6D01G068700 chr2B 172273041 172273664 623 False 392.000000 392 78.549000 168 783 1 chr2B.!!$F1 615
17 TraesCS6D01G068700 chr2A 196049420 196050029 609 True 390.000000 390 78.778000 180 783 1 chr2A.!!$R1 603
18 TraesCS6D01G068700 chr5B 652324754 652325377 623 False 381.000000 381 78.233000 168 783 1 chr5B.!!$F1 615
19 TraesCS6D01G068700 chr5A 92668064 92668687 623 False 381.000000 381 78.233000 168 783 1 chr5A.!!$F1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
969 3918 0.251165 ACAAGGCCACCATACCACAC 60.251 55.0 5.01 0.0 0.00 3.82 F
1046 4362 0.104777 ATCAGGGAGCTGGGAGCATA 60.105 55.0 0.00 0.0 45.56 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2581 6289 0.374758 GCACATATGACACTGCACGG 59.625 55.000 10.38 0.0 0.0 4.94 R
2715 6424 1.200020 GATCACCCGTTGCCTTTTCAG 59.800 52.381 0.00 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.692681 CAGGTGCTAACAAATTGCATATACAC 59.307 38.462 0.00 0.00 39.00 2.90
189 204 5.376625 ACACAATTGTCCTAGTGTGAACAT 58.623 37.500 8.48 0.00 43.23 2.71
270 285 7.328737 TGGGTAAGAGAAAACTCTAACATAGC 58.671 38.462 0.00 0.00 32.66 2.97
368 388 9.926158 AACAAATGCTATTCACAACATTTATGA 57.074 25.926 0.00 0.00 39.92 2.15
410 430 4.690748 CCAGCTTCTGTATTCGTTCAAAGA 59.309 41.667 0.00 0.00 0.00 2.52
461 483 4.973168 TGTAGAAATTGACAGGCACTCTT 58.027 39.130 0.00 0.00 34.60 2.85
508 533 7.067496 AGAGTTATGAGGAGTGTTTCAGAAA 57.933 36.000 0.00 0.00 0.00 2.52
510 535 6.831976 AGTTATGAGGAGTGTTTCAGAAAGT 58.168 36.000 0.00 0.00 0.00 2.66
511 536 6.708054 AGTTATGAGGAGTGTTTCAGAAAGTG 59.292 38.462 0.00 0.00 0.00 3.16
528 553 9.349145 TCAGAAAGTGCTTTGTTAGTTTTTAAC 57.651 29.630 1.51 0.00 32.11 2.01
564 589 1.590591 TTTAGCTGGATGTAGGCCCA 58.409 50.000 0.00 0.00 0.00 5.36
570 599 0.764890 TGGATGTAGGCCCATACTGC 59.235 55.000 0.00 0.00 0.00 4.40
597 626 7.547370 GGATGCTATGACACTTAATGATAGGTC 59.453 40.741 0.00 0.00 0.00 3.85
600 629 9.314133 TGCTATGACACTTAATGATAGGTCTAT 57.686 33.333 0.00 0.00 0.00 1.98
691 720 3.878778 AGAGACAAAGTCCCATGCATAC 58.121 45.455 0.00 0.00 32.18 2.39
723 752 6.320164 GGCCTGGTTTTTCCAAACTTTAAAAT 59.680 34.615 0.00 0.00 46.59 1.82
801 831 6.495181 TCTGGAGTCTGAGACTTGACTAAATT 59.505 38.462 17.31 0.00 43.53 1.82
867 951 3.243201 GCACCTTGGTTTGACTTCTTCAG 60.243 47.826 0.00 0.00 34.94 3.02
868 952 2.952310 ACCTTGGTTTGACTTCTTCAGC 59.048 45.455 0.00 0.00 34.94 4.26
870 954 3.217626 CTTGGTTTGACTTCTTCAGCCT 58.782 45.455 0.00 0.00 34.94 4.58
871 955 2.851195 TGGTTTGACTTCTTCAGCCTC 58.149 47.619 0.00 0.00 34.94 4.70
872 956 2.439507 TGGTTTGACTTCTTCAGCCTCT 59.560 45.455 0.00 0.00 34.94 3.69
874 958 3.244387 GGTTTGACTTCTTCAGCCTCTCT 60.244 47.826 0.00 0.00 34.94 3.10
875 959 3.674528 TTGACTTCTTCAGCCTCTCTG 57.325 47.619 0.00 0.00 44.21 3.35
876 960 2.603021 TGACTTCTTCAGCCTCTCTGT 58.397 47.619 0.00 0.00 43.32 3.41
877 961 2.968574 TGACTTCTTCAGCCTCTCTGTT 59.031 45.455 0.00 0.00 43.32 3.16
878 962 3.244009 TGACTTCTTCAGCCTCTCTGTTG 60.244 47.826 0.00 0.00 43.32 3.33
879 963 2.038295 ACTTCTTCAGCCTCTCTGTTGG 59.962 50.000 0.00 0.00 43.32 3.77
884 968 4.432741 GCCTCTCTGTTGGCCCCC 62.433 72.222 0.00 0.00 43.11 5.40
885 969 4.101448 CCTCTCTGTTGGCCCCCG 62.101 72.222 0.00 0.00 0.00 5.73
886 970 3.322466 CTCTCTGTTGGCCCCCGT 61.322 66.667 0.00 0.00 0.00 5.28
887 971 3.612247 CTCTCTGTTGGCCCCCGTG 62.612 68.421 0.00 0.00 0.00 4.94
888 972 3.953775 CTCTGTTGGCCCCCGTGT 61.954 66.667 0.00 0.00 0.00 4.49
892 976 4.360405 GTTGGCCCCCGTGTGGAT 62.360 66.667 0.00 0.00 37.49 3.41
893 977 4.041762 TTGGCCCCCGTGTGGATC 62.042 66.667 0.00 0.00 37.49 3.36
895 979 4.489771 GGCCCCCGTGTGGATCAG 62.490 72.222 0.00 0.00 37.49 2.90
896 980 3.399181 GCCCCCGTGTGGATCAGA 61.399 66.667 0.00 0.00 37.49 3.27
897 981 2.584608 CCCCCGTGTGGATCAGAC 59.415 66.667 0.00 0.00 37.49 3.51
901 985 2.261361 CGTGTGGATCAGACGGCA 59.739 61.111 9.28 0.00 45.21 5.69
939 3888 2.092212 AGACGGCAAAGGATGATCCATT 60.092 45.455 14.90 5.01 39.61 3.16
940 3889 2.689983 GACGGCAAAGGATGATCCATTT 59.310 45.455 14.90 8.45 39.61 2.32
941 3890 3.882888 GACGGCAAAGGATGATCCATTTA 59.117 43.478 14.90 0.00 39.61 1.40
942 3891 3.632145 ACGGCAAAGGATGATCCATTTAC 59.368 43.478 14.90 6.23 39.61 2.01
943 3892 3.631686 CGGCAAAGGATGATCCATTTACA 59.368 43.478 14.90 0.00 39.61 2.41
945 3894 5.394005 CGGCAAAGGATGATCCATTTACAAA 60.394 40.000 14.90 0.00 39.61 2.83
946 3895 5.812127 GGCAAAGGATGATCCATTTACAAAC 59.188 40.000 14.90 0.98 39.61 2.93
947 3896 5.812127 GCAAAGGATGATCCATTTACAAACC 59.188 40.000 14.90 0.00 39.61 3.27
948 3897 6.340522 CAAAGGATGATCCATTTACAAACCC 58.659 40.000 14.90 0.00 39.61 4.11
951 3900 5.422012 AGGATGATCCATTTACAAACCCAAC 59.578 40.000 14.90 0.00 39.61 3.77
952 3901 5.186797 GGATGATCCATTTACAAACCCAACA 59.813 40.000 6.60 0.00 36.28 3.33
953 3902 6.295575 GGATGATCCATTTACAAACCCAACAA 60.296 38.462 6.60 0.00 36.28 2.83
954 3903 6.095432 TGATCCATTTACAAACCCAACAAG 57.905 37.500 0.00 0.00 0.00 3.16
955 3904 4.946478 TCCATTTACAAACCCAACAAGG 57.054 40.909 0.00 0.00 37.03 3.61
956 3905 3.070302 TCCATTTACAAACCCAACAAGGC 59.930 43.478 0.00 0.00 35.39 4.35
957 3906 3.398406 CATTTACAAACCCAACAAGGCC 58.602 45.455 0.00 0.00 35.39 5.19
959 3908 1.404843 TACAAACCCAACAAGGCCAC 58.595 50.000 5.01 0.00 35.39 5.01
960 3909 1.334384 ACAAACCCAACAAGGCCACC 61.334 55.000 5.01 0.00 35.39 4.61
961 3910 1.002274 AAACCCAACAAGGCCACCA 59.998 52.632 5.01 0.00 35.39 4.17
962 3911 0.399806 AAACCCAACAAGGCCACCAT 60.400 50.000 5.01 0.00 35.39 3.55
963 3912 0.485099 AACCCAACAAGGCCACCATA 59.515 50.000 5.01 0.00 35.39 2.74
964 3913 0.251608 ACCCAACAAGGCCACCATAC 60.252 55.000 5.01 0.00 35.39 2.39
965 3914 0.970427 CCCAACAAGGCCACCATACC 60.970 60.000 5.01 0.00 35.39 2.73
966 3915 0.251564 CCAACAAGGCCACCATACCA 60.252 55.000 5.01 0.00 0.00 3.25
967 3916 0.887933 CAACAAGGCCACCATACCAC 59.112 55.000 5.01 0.00 0.00 4.16
968 3917 0.480690 AACAAGGCCACCATACCACA 59.519 50.000 5.01 0.00 0.00 4.17
969 3918 0.251165 ACAAGGCCACCATACCACAC 60.251 55.000 5.01 0.00 0.00 3.82
972 4288 0.251165 AGGCCACCATACCACACAAC 60.251 55.000 5.01 0.00 0.00 3.32
974 4290 0.596082 GCCACCATACCACACAACAC 59.404 55.000 0.00 0.00 0.00 3.32
979 4295 2.356382 ACCATACCACACAACACAAACG 59.644 45.455 0.00 0.00 0.00 3.60
987 4303 4.379603 CCACACAACACAAACGTAGGAAAA 60.380 41.667 0.00 0.00 0.00 2.29
1001 4317 2.501261 AGGAAAAAGGAGTTGCCGTAC 58.499 47.619 0.00 0.00 43.43 3.67
1003 4319 2.817844 GGAAAAAGGAGTTGCCGTACAT 59.182 45.455 0.00 0.00 43.43 2.29
1005 4321 4.456566 GGAAAAAGGAGTTGCCGTACATAA 59.543 41.667 0.00 0.00 43.43 1.90
1006 4322 5.048573 GGAAAAAGGAGTTGCCGTACATAAA 60.049 40.000 0.00 0.00 43.43 1.40
1010 4326 3.439129 AGGAGTTGCCGTACATAAAAAGC 59.561 43.478 0.00 0.00 43.43 3.51
1012 4328 4.320641 GGAGTTGCCGTACATAAAAAGCAA 60.321 41.667 0.00 0.00 37.85 3.91
1013 4329 4.794169 AGTTGCCGTACATAAAAAGCAAG 58.206 39.130 0.00 0.00 40.56 4.01
1014 4330 3.210358 TGCCGTACATAAAAAGCAAGC 57.790 42.857 0.00 0.00 0.00 4.01
1015 4331 2.817258 TGCCGTACATAAAAAGCAAGCT 59.183 40.909 0.00 0.00 0.00 3.74
1016 4332 3.119990 TGCCGTACATAAAAAGCAAGCTC 60.120 43.478 0.00 0.00 0.00 4.09
1017 4333 3.119990 GCCGTACATAAAAAGCAAGCTCA 60.120 43.478 0.00 0.00 0.00 4.26
1018 4334 4.614993 GCCGTACATAAAAAGCAAGCTCAA 60.615 41.667 0.00 0.00 0.00 3.02
1019 4335 5.457140 CCGTACATAAAAAGCAAGCTCAAA 58.543 37.500 0.00 0.00 0.00 2.69
1020 4336 5.918011 CCGTACATAAAAAGCAAGCTCAAAA 59.082 36.000 0.00 0.00 0.00 2.44
1021 4337 6.419413 CCGTACATAAAAAGCAAGCTCAAAAA 59.581 34.615 0.00 0.00 0.00 1.94
1040 4356 1.928868 AAAAACATCAGGGAGCTGGG 58.071 50.000 0.00 0.00 0.00 4.45
1041 4357 1.075601 AAAACATCAGGGAGCTGGGA 58.924 50.000 0.00 0.00 0.00 4.37
1042 4358 0.622665 AAACATCAGGGAGCTGGGAG 59.377 55.000 0.00 0.00 0.00 4.30
1043 4359 1.919600 AACATCAGGGAGCTGGGAGC 61.920 60.000 0.00 0.00 42.84 4.70
1044 4360 2.041762 ATCAGGGAGCTGGGAGCA 59.958 61.111 0.00 0.00 45.56 4.26
1045 4361 1.385631 ATCAGGGAGCTGGGAGCAT 60.386 57.895 0.00 0.00 45.56 3.79
1046 4362 0.104777 ATCAGGGAGCTGGGAGCATA 60.105 55.000 0.00 0.00 45.56 3.14
1047 4363 0.762082 TCAGGGAGCTGGGAGCATAG 60.762 60.000 0.00 0.00 45.56 2.23
1048 4364 1.461075 AGGGAGCTGGGAGCATAGG 60.461 63.158 0.00 0.00 45.56 2.57
1049 4365 2.524204 GGGAGCTGGGAGCATAGGG 61.524 68.421 0.00 0.00 45.56 3.53
1071 4387 4.501400 GGACCTGTGGTGAAATTTTCAAGG 60.501 45.833 19.32 19.32 42.15 3.61
1072 4388 4.030216 ACCTGTGGTGAAATTTTCAAGGT 58.970 39.130 20.28 20.28 40.55 3.50
1092 4408 2.043953 GGGATGGGGACTTGTGGC 60.044 66.667 0.00 0.00 0.00 5.01
1114 4430 5.094812 GCGTCTTATTGTCATTGCAATTCA 58.905 37.500 9.83 9.46 39.50 2.57
1213 4541 7.038302 TCACCACACTCCTCTTTAGACAATTAT 60.038 37.037 0.00 0.00 0.00 1.28
1214 4542 8.258007 CACCACACTCCTCTTTAGACAATTATA 58.742 37.037 0.00 0.00 0.00 0.98
1443 4775 2.922503 TTCCGACAGAGCTGGGCA 60.923 61.111 0.00 0.00 34.19 5.36
1464 4796 3.147595 CGGCCTCGATCCTGTCCA 61.148 66.667 0.00 0.00 39.00 4.02
2053 5426 0.609131 AAGGAGATGTTTGTGCGGGG 60.609 55.000 0.00 0.00 0.00 5.73
2110 5489 2.093890 TCGTATCCTCAACTTACCGCA 58.906 47.619 0.00 0.00 0.00 5.69
2483 6186 8.776376 AACAAAACACAATCTTCTCATTTGTT 57.224 26.923 7.30 7.30 41.95 2.83
2484 6187 8.188531 ACAAAACACAATCTTCTCATTTGTTG 57.811 30.769 0.00 0.00 36.63 3.33
2485 6188 7.818930 ACAAAACACAATCTTCTCATTTGTTGT 59.181 29.630 0.00 0.00 36.63 3.32
2581 6289 5.528690 TGCTCATCCACTTTATGATAACAGC 59.471 40.000 0.00 0.00 33.08 4.40
2595 6303 0.034756 AACAGCCGTGCAGTGTCATA 59.965 50.000 0.00 0.00 0.00 2.15
2715 6424 1.218316 CCGTGGCCTCAAGTCTACC 59.782 63.158 3.32 0.00 0.00 3.18
2737 6446 0.536460 AAAAGGCAACGGGTGATCGT 60.536 50.000 0.00 0.00 46.08 3.73
2738 6447 1.234615 AAAGGCAACGGGTGATCGTG 61.235 55.000 0.00 0.00 43.07 4.35
2760 6469 4.145052 GTCCACCTGAACTCAATTCCTTT 58.855 43.478 0.00 0.00 36.36 3.11
2885 6605 4.077108 TCGGCTAGGTTGACGTATGATAT 58.923 43.478 0.00 0.00 39.83 1.63
2951 6671 3.334054 AAGAGGGCCCTGGCTGAC 61.334 66.667 34.59 14.41 41.60 3.51
3039 6759 2.498481 CCACCAATCCCACTAACGTCTA 59.502 50.000 0.00 0.00 0.00 2.59
3050 6770 4.868734 CCACTAACGTCTACCCTTGAATTC 59.131 45.833 0.00 0.00 0.00 2.17
3085 6806 2.094338 CACTAAGTCACTAACCCGACCC 60.094 54.545 0.00 0.00 32.33 4.46
3092 6813 1.065273 CTAACCCGACCCGATGACG 59.935 63.158 0.00 0.00 39.43 4.35
3133 6854 1.634459 TCTCCGTGACTAAGGGACTCT 59.366 52.381 0.00 0.00 38.49 3.24
3154 6875 5.650543 TCTTTTCTTTTGCTGGAAAGTGAC 58.349 37.500 0.00 0.00 37.76 3.67
3166 6887 5.743422 GCTGGAAAGTGACTAAGGACTCTTT 60.743 44.000 0.00 0.00 35.18 2.52
3167 6888 5.855045 TGGAAAGTGACTAAGGACTCTTTC 58.145 41.667 0.00 0.00 41.76 2.62
3168 6889 4.924462 GGAAAGTGACTAAGGACTCTTTCG 59.076 45.833 0.00 0.00 42.51 3.46
3202 6923 7.576861 AAAAACGAGAGAATAAGAAAACCCA 57.423 32.000 0.00 0.00 0.00 4.51
3205 6926 7.761038 AACGAGAGAATAAGAAAACCCAAAT 57.239 32.000 0.00 0.00 0.00 2.32
3206 6927 7.145932 ACGAGAGAATAAGAAAACCCAAATG 57.854 36.000 0.00 0.00 0.00 2.32
3207 6928 6.940298 ACGAGAGAATAAGAAAACCCAAATGA 59.060 34.615 0.00 0.00 0.00 2.57
3208 6929 7.611855 ACGAGAGAATAAGAAAACCCAAATGAT 59.388 33.333 0.00 0.00 0.00 2.45
3209 6930 9.109393 CGAGAGAATAAGAAAACCCAAATGATA 57.891 33.333 0.00 0.00 0.00 2.15
3222 6943 5.094812 CCCAAATGATAAATGTCACACGTG 58.905 41.667 15.48 15.48 0.00 4.49
3251 6972 0.248289 GCACTCCAGCCCTAACGTTA 59.752 55.000 7.94 7.94 0.00 3.18
3430 7151 6.153680 AGTGACACTTATCAAGGTCCTAAGAG 59.846 42.308 1.07 1.52 31.67 2.85
3482 7203 1.134551 TGCAGGCTTTTGGGTTGTTTC 60.135 47.619 0.00 0.00 0.00 2.78
3506 7227 9.890629 TTCATTGCATTCTATGAAAGTAGTACT 57.109 29.630 8.71 0.00 39.97 2.73
3560 7281 5.017294 TCAATCCTTTGAACCAAACAACC 57.983 39.130 0.00 0.00 38.90 3.77
3561 7282 3.726291 ATCCTTTGAACCAAACAACCG 57.274 42.857 0.00 0.00 0.00 4.44
3565 7286 4.160626 TCCTTTGAACCAAACAACCGAAAT 59.839 37.500 0.00 0.00 0.00 2.17
3582 7303 7.683437 ACCGAAATAGGAAAAGTTTCTAAGG 57.317 36.000 3.92 2.14 37.35 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.415867 CAGCAGTGTATATGCAATTTGTTAGC 59.584 38.462 0.00 0.00 46.31 3.09
29 30 6.967135 ACATCATATGCAAAATAGTCAGCAG 58.033 36.000 0.00 0.00 40.71 4.24
148 152 9.409312 CAATTGTGTTATACTTTGATCTGCAAA 57.591 29.630 0.00 0.00 43.89 3.68
164 170 6.350103 TGTTCACACTAGGACAATTGTGTTA 58.650 36.000 17.58 7.11 41.04 2.41
166 172 4.776349 TGTTCACACTAGGACAATTGTGT 58.224 39.130 17.58 4.50 43.36 3.72
207 222 3.979347 AGTTATCCATCTCCTCTTGGCAT 59.021 43.478 0.00 0.00 32.80 4.40
208 223 3.135348 CAGTTATCCATCTCCTCTTGGCA 59.865 47.826 0.00 0.00 32.80 4.92
399 419 5.864474 GCTCTCTACTTCATCTTTGAACGAA 59.136 40.000 0.00 0.00 36.94 3.85
410 430 1.066587 GCGGCGCTCTCTACTTCAT 59.933 57.895 26.86 0.00 0.00 2.57
461 483 2.512056 TCCCTTGAACTGGAAAGGAACA 59.488 45.455 3.01 0.00 44.93 3.18
508 533 7.608153 ACAAGGTTAAAAACTAACAAAGCACT 58.392 30.769 0.00 0.00 0.00 4.40
510 535 7.332182 CCAACAAGGTTAAAAACTAACAAAGCA 59.668 33.333 0.00 0.00 0.00 3.91
511 536 7.546316 TCCAACAAGGTTAAAAACTAACAAAGC 59.454 33.333 0.00 0.00 39.02 3.51
528 553 4.524328 AGCTAAAAATCCACTCCAACAAGG 59.476 41.667 0.00 0.00 39.47 3.61
564 589 2.630098 AGTGTCATAGCATCCGCAGTAT 59.370 45.455 0.00 0.00 42.27 2.12
570 599 6.533012 CCTATCATTAAGTGTCATAGCATCCG 59.467 42.308 0.00 0.00 0.00 4.18
597 626 2.743938 CAGCTACCAACTGCCGTATAG 58.256 52.381 0.00 0.00 0.00 1.31
691 720 0.313987 GAAAAACCAGGCCCAACTCG 59.686 55.000 0.00 0.00 0.00 4.18
723 752 6.443849 AGTCTTTCAGGATGTTCTATAACCCA 59.556 38.462 0.00 0.00 37.40 4.51
814 844 7.730364 AGCAGCATACACCATACTTTATTAC 57.270 36.000 0.00 0.00 0.00 1.89
868 952 4.101448 CGGGGGCCAACAGAGAGG 62.101 72.222 4.39 0.00 0.00 3.69
870 954 3.636231 CACGGGGGCCAACAGAGA 61.636 66.667 4.39 0.00 0.00 3.10
871 955 3.953775 ACACGGGGGCCAACAGAG 61.954 66.667 4.39 0.00 0.00 3.35
872 956 4.263572 CACACGGGGGCCAACAGA 62.264 66.667 4.39 0.00 0.00 3.41
875 959 4.360405 ATCCACACGGGGGCCAAC 62.360 66.667 4.39 0.00 37.22 3.77
876 960 4.041762 GATCCACACGGGGGCCAA 62.042 66.667 4.39 0.00 37.22 4.52
878 962 4.489771 CTGATCCACACGGGGGCC 62.490 72.222 0.00 0.00 37.22 5.80
879 963 3.399181 TCTGATCCACACGGGGGC 61.399 66.667 0.00 0.00 37.22 5.80
881 965 2.184322 CGTCTGATCCACACGGGG 59.816 66.667 0.00 0.00 37.22 5.73
882 966 2.184322 CCGTCTGATCCACACGGG 59.816 66.667 15.94 0.00 39.96 5.28
884 968 1.807165 CTGCCGTCTGATCCACACG 60.807 63.158 0.00 0.00 0.00 4.49
885 969 2.103042 GCTGCCGTCTGATCCACAC 61.103 63.158 0.00 0.00 0.00 3.82
886 970 0.970427 TAGCTGCCGTCTGATCCACA 60.970 55.000 0.00 0.00 0.00 4.17
887 971 0.249238 CTAGCTGCCGTCTGATCCAC 60.249 60.000 0.00 0.00 0.00 4.02
888 972 0.395724 TCTAGCTGCCGTCTGATCCA 60.396 55.000 0.00 0.00 0.00 3.41
892 976 1.202302 CGATTTCTAGCTGCCGTCTGA 60.202 52.381 0.00 0.00 0.00 3.27
893 977 1.203928 CGATTTCTAGCTGCCGTCTG 58.796 55.000 0.00 0.00 0.00 3.51
894 978 0.528684 GCGATTTCTAGCTGCCGTCT 60.529 55.000 0.00 0.00 0.00 4.18
895 979 0.528684 AGCGATTTCTAGCTGCCGTC 60.529 55.000 0.00 0.00 42.82 4.79
896 980 1.517832 AGCGATTTCTAGCTGCCGT 59.482 52.632 0.00 0.00 42.82 5.68
897 981 4.427394 AGCGATTTCTAGCTGCCG 57.573 55.556 0.00 0.00 42.82 5.69
901 985 2.032799 CGTCTCTCAGCGATTTCTAGCT 59.967 50.000 0.00 0.00 45.74 3.32
939 3888 1.757699 GTGGCCTTGTTGGGTTTGTAA 59.242 47.619 3.32 0.00 36.00 2.41
940 3889 1.404843 GTGGCCTTGTTGGGTTTGTA 58.595 50.000 3.32 0.00 36.00 2.41
941 3890 1.334384 GGTGGCCTTGTTGGGTTTGT 61.334 55.000 3.32 0.00 36.00 2.83
942 3891 1.333636 TGGTGGCCTTGTTGGGTTTG 61.334 55.000 3.32 0.00 36.00 2.93
943 3892 0.399806 ATGGTGGCCTTGTTGGGTTT 60.400 50.000 3.32 0.00 36.00 3.27
945 3894 0.251608 GTATGGTGGCCTTGTTGGGT 60.252 55.000 3.32 0.00 36.00 4.51
946 3895 0.970427 GGTATGGTGGCCTTGTTGGG 60.970 60.000 3.32 0.00 36.00 4.12
947 3896 0.251564 TGGTATGGTGGCCTTGTTGG 60.252 55.000 3.32 0.00 39.35 3.77
948 3897 0.887933 GTGGTATGGTGGCCTTGTTG 59.112 55.000 3.32 0.00 0.00 3.33
951 3900 0.251121 TGTGTGGTATGGTGGCCTTG 60.251 55.000 3.32 0.00 0.00 3.61
952 3901 0.480690 TTGTGTGGTATGGTGGCCTT 59.519 50.000 3.32 0.00 0.00 4.35
953 3902 0.251165 GTTGTGTGGTATGGTGGCCT 60.251 55.000 3.32 0.00 0.00 5.19
954 3903 0.538516 TGTTGTGTGGTATGGTGGCC 60.539 55.000 0.00 0.00 0.00 5.36
955 3904 0.596082 GTGTTGTGTGGTATGGTGGC 59.404 55.000 0.00 0.00 0.00 5.01
956 3905 1.974265 TGTGTTGTGTGGTATGGTGG 58.026 50.000 0.00 0.00 0.00 4.61
957 3906 3.701241 GTTTGTGTTGTGTGGTATGGTG 58.299 45.455 0.00 0.00 0.00 4.17
959 3908 2.356382 ACGTTTGTGTTGTGTGGTATGG 59.644 45.455 0.00 0.00 0.00 2.74
960 3909 3.684103 ACGTTTGTGTTGTGTGGTATG 57.316 42.857 0.00 0.00 0.00 2.39
961 3910 3.810941 CCTACGTTTGTGTTGTGTGGTAT 59.189 43.478 0.00 0.00 0.00 2.73
962 3911 3.118847 TCCTACGTTTGTGTTGTGTGGTA 60.119 43.478 0.00 0.00 0.00 3.25
963 3912 2.011222 CCTACGTTTGTGTTGTGTGGT 58.989 47.619 0.00 0.00 0.00 4.16
964 3913 2.281517 TCCTACGTTTGTGTTGTGTGG 58.718 47.619 0.00 0.00 0.00 4.17
965 3914 4.343811 TTTCCTACGTTTGTGTTGTGTG 57.656 40.909 0.00 0.00 0.00 3.82
966 3915 5.373981 TTTTTCCTACGTTTGTGTTGTGT 57.626 34.783 0.00 0.00 0.00 3.72
967 3916 4.796312 CCTTTTTCCTACGTTTGTGTTGTG 59.204 41.667 0.00 0.00 0.00 3.33
968 3917 4.701171 TCCTTTTTCCTACGTTTGTGTTGT 59.299 37.500 0.00 0.00 0.00 3.32
969 3918 5.163693 ACTCCTTTTTCCTACGTTTGTGTTG 60.164 40.000 0.00 0.00 0.00 3.33
972 4288 5.270853 CAACTCCTTTTTCCTACGTTTGTG 58.729 41.667 0.00 0.00 0.00 3.33
974 4290 4.287720 GCAACTCCTTTTTCCTACGTTTG 58.712 43.478 0.00 0.00 0.00 2.93
979 4295 2.501261 ACGGCAACTCCTTTTTCCTAC 58.499 47.619 0.00 0.00 0.00 3.18
987 4303 4.082949 GCTTTTTATGTACGGCAACTCCTT 60.083 41.667 0.00 0.00 0.00 3.36
1021 4337 1.428912 TCCCAGCTCCCTGATGTTTTT 59.571 47.619 0.00 0.00 41.77 1.94
1022 4338 1.005215 CTCCCAGCTCCCTGATGTTTT 59.995 52.381 0.00 0.00 41.77 2.43
1023 4339 0.622665 CTCCCAGCTCCCTGATGTTT 59.377 55.000 0.00 0.00 41.77 2.83
1024 4340 1.919600 GCTCCCAGCTCCCTGATGTT 61.920 60.000 0.00 0.00 41.77 2.71
1025 4341 2.373707 GCTCCCAGCTCCCTGATGT 61.374 63.158 0.00 0.00 41.77 3.06
1026 4342 1.706995 ATGCTCCCAGCTCCCTGATG 61.707 60.000 0.00 0.00 42.97 3.07
1027 4343 0.104777 TATGCTCCCAGCTCCCTGAT 60.105 55.000 0.00 0.00 42.97 2.90
1028 4344 0.762082 CTATGCTCCCAGCTCCCTGA 60.762 60.000 0.00 0.00 42.97 3.86
1029 4345 1.753470 CTATGCTCCCAGCTCCCTG 59.247 63.158 0.00 0.00 42.97 4.45
1030 4346 1.461075 CCTATGCTCCCAGCTCCCT 60.461 63.158 0.00 0.00 42.97 4.20
1031 4347 2.524204 CCCTATGCTCCCAGCTCCC 61.524 68.421 0.00 0.00 42.97 4.30
1032 4348 1.460305 TCCCTATGCTCCCAGCTCC 60.460 63.158 0.00 0.00 42.97 4.70
1033 4349 1.751563 GTCCCTATGCTCCCAGCTC 59.248 63.158 0.00 0.00 42.97 4.09
1034 4350 1.768077 GGTCCCTATGCTCCCAGCT 60.768 63.158 0.00 0.00 42.97 4.24
1035 4351 1.768077 AGGTCCCTATGCTCCCAGC 60.768 63.158 0.00 0.00 42.82 4.85
1036 4352 0.692419 ACAGGTCCCTATGCTCCCAG 60.692 60.000 0.00 0.00 0.00 4.45
1037 4353 0.982852 CACAGGTCCCTATGCTCCCA 60.983 60.000 0.00 0.00 0.00 4.37
1038 4354 1.700042 CCACAGGTCCCTATGCTCCC 61.700 65.000 0.00 0.00 0.00 4.30
1039 4355 0.983378 ACCACAGGTCCCTATGCTCC 60.983 60.000 0.00 0.00 0.00 4.70
1040 4356 0.179000 CACCACAGGTCCCTATGCTC 59.821 60.000 0.00 0.00 31.02 4.26
1041 4357 0.252696 TCACCACAGGTCCCTATGCT 60.253 55.000 0.00 0.00 31.02 3.79
1042 4358 0.618458 TTCACCACAGGTCCCTATGC 59.382 55.000 0.00 0.00 31.02 3.14
1043 4359 3.652057 ATTTCACCACAGGTCCCTATG 57.348 47.619 0.00 0.00 31.02 2.23
1044 4360 4.675063 AAATTTCACCACAGGTCCCTAT 57.325 40.909 0.00 0.00 31.02 2.57
1045 4361 4.141135 TGAAAATTTCACCACAGGTCCCTA 60.141 41.667 4.03 0.00 34.08 3.53
1046 4362 3.230976 GAAAATTTCACCACAGGTCCCT 58.769 45.455 0.11 0.00 31.02 4.20
1047 4363 2.962421 TGAAAATTTCACCACAGGTCCC 59.038 45.455 4.03 0.00 34.08 4.46
1048 4364 4.501400 CCTTGAAAATTTCACCACAGGTCC 60.501 45.833 8.06 0.00 39.87 4.46
1049 4365 4.099419 ACCTTGAAAATTTCACCACAGGTC 59.901 41.667 18.89 0.00 41.14 3.85
1071 4387 0.609131 CACAAGTCCCCATCCCACAC 60.609 60.000 0.00 0.00 0.00 3.82
1072 4388 1.767036 CACAAGTCCCCATCCCACA 59.233 57.895 0.00 0.00 0.00 4.17
1092 4408 7.745022 AATGAATTGCAATGACAATAAGACG 57.255 32.000 13.82 0.00 39.32 4.18
1114 4430 5.409826 TGCGGTGACTTTTTGTTTTGAAAAT 59.590 32.000 0.00 0.00 0.00 1.82
1213 4541 0.906775 GTCCGGTGATCCCTTGGTTA 59.093 55.000 0.00 0.00 0.00 2.85
1214 4542 1.683441 GTCCGGTGATCCCTTGGTT 59.317 57.895 0.00 0.00 0.00 3.67
1443 4775 1.668101 GACAGGATCGAGGCCGTCTT 61.668 60.000 16.91 0.00 37.05 3.01
1464 4796 2.367202 CGGTGTACTCCAGGCCCAT 61.367 63.158 14.09 0.00 0.00 4.00
2069 5442 1.136057 GTCGGACGAAGAAACCAATGC 60.136 52.381 0.00 0.00 0.00 3.56
2110 5489 6.485830 TCCATGAATCGAGGATAGAAAACT 57.514 37.500 0.00 0.00 0.00 2.66
2483 6186 3.764434 TGGCAAAAGTTTGGTGAAGTACA 59.236 39.130 5.95 0.00 38.57 2.90
2484 6187 4.142249 ACTGGCAAAAGTTTGGTGAAGTAC 60.142 41.667 5.95 0.00 38.57 2.73
2485 6188 4.020543 ACTGGCAAAAGTTTGGTGAAGTA 58.979 39.130 5.95 0.00 38.57 2.24
2581 6289 0.374758 GCACATATGACACTGCACGG 59.625 55.000 10.38 0.00 0.00 4.94
2595 6303 5.011533 ACTCTAACTCTTCTGTTCTGCACAT 59.988 40.000 0.00 0.00 33.76 3.21
2715 6424 1.200020 GATCACCCGTTGCCTTTTCAG 59.800 52.381 0.00 0.00 0.00 3.02
2737 6446 2.711009 AGGAATTGAGTTCAGGTGGACA 59.289 45.455 0.00 0.00 38.64 4.02
2738 6447 3.425162 AGGAATTGAGTTCAGGTGGAC 57.575 47.619 0.00 0.00 38.64 4.02
2951 6671 7.977853 AGGTTTAGATTATTGCTGCAGAAATTG 59.022 33.333 25.03 0.00 0.00 2.32
3039 6759 3.459969 GGACCATAGAGGAATTCAAGGGT 59.540 47.826 7.93 6.58 41.22 4.34
3050 6770 3.892588 GACTTAGTGAGGGACCATAGAGG 59.107 52.174 0.00 0.00 45.67 3.69
3097 6818 2.552031 GGAGAAGATTTACGGGCTGAC 58.448 52.381 0.00 0.00 0.00 3.51
3133 6854 5.659440 AGTCACTTTCCAGCAAAAGAAAA 57.341 34.783 11.71 0.00 38.30 2.29
3154 6875 2.631418 TCGTGCGAAAGAGTCCTTAG 57.369 50.000 0.00 0.00 31.15 2.18
3183 6904 7.377766 TCATTTGGGTTTTCTTATTCTCTCG 57.622 36.000 0.00 0.00 0.00 4.04
3199 6920 5.094812 CACGTGTGACATTTATCATTTGGG 58.905 41.667 7.58 0.00 0.00 4.12
3222 6943 2.280797 TGGAGTGCTTCGTGCCAC 60.281 61.111 0.00 0.00 42.00 5.01
3236 6957 4.822685 TGTAAATAACGTTAGGGCTGGA 57.177 40.909 14.25 0.00 0.00 3.86
3239 6960 8.620116 TTTTAGTTGTAAATAACGTTAGGGCT 57.380 30.769 14.25 7.20 35.73 5.19
3303 7024 4.143052 GCATGGCAACTTACTTTTGAATGC 60.143 41.667 0.00 7.15 37.89 3.56
3307 7028 4.340666 TCAAGCATGGCAACTTACTTTTGA 59.659 37.500 5.89 0.00 37.61 2.69
3344 7065 4.094294 GGCAAGTTAAGTGATGCGTTGATA 59.906 41.667 1.79 0.00 39.66 2.15
3345 7066 3.119849 GGCAAGTTAAGTGATGCGTTGAT 60.120 43.478 1.79 0.00 39.66 2.57
3348 7069 2.226330 TGGCAAGTTAAGTGATGCGTT 58.774 42.857 1.79 0.00 39.66 4.84
3375 7096 3.618594 CACGAACTCATGACAATTCCGAT 59.381 43.478 0.00 0.00 0.00 4.18
3377 7098 2.474526 GCACGAACTCATGACAATTCCG 60.475 50.000 0.00 0.00 0.00 4.30
3381 7102 1.806542 GTGGCACGAACTCATGACAAT 59.193 47.619 0.00 0.00 35.02 2.71
3430 7151 7.393216 AGATGAGCATTCCAGTCCTATATTTC 58.607 38.462 0.00 0.00 0.00 2.17
3441 7162 3.815962 CAGGATTGAGATGAGCATTCCAG 59.184 47.826 0.00 0.00 37.94 3.86
3529 7250 8.792830 TTGGTTCAAAGGATTGAGTCTTATAG 57.207 34.615 0.00 0.00 45.82 1.31
3533 7254 5.656416 TGTTTGGTTCAAAGGATTGAGTCTT 59.344 36.000 0.00 0.00 45.82 3.01
3537 7258 5.049828 GGTTGTTTGGTTCAAAGGATTGAG 58.950 41.667 0.00 0.00 45.82 3.02
3560 7281 9.989869 GAATCCTTAGAAACTTTTCCTATTTCG 57.010 33.333 0.00 0.00 37.41 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.