Multiple sequence alignment - TraesCS6D01G067500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G067500 chr6D 100.000 2768 0 0 1 2768 33141286 33144053 0.000000e+00 5112
1 TraesCS6D01G067500 chr6A 93.767 1123 38 16 427 1530 37700015 37701124 0.000000e+00 1657
2 TraesCS6D01G067500 chr6A 91.700 988 43 23 1619 2586 37701460 37702428 0.000000e+00 1334
3 TraesCS6D01G067500 chr6A 86.500 200 19 5 2573 2766 37703477 37703674 2.160000e-51 213
4 TraesCS6D01G067500 chr6B 92.344 1071 47 13 1503 2555 69708672 69709725 0.000000e+00 1491
5 TraesCS6D01G067500 chr6B 91.705 1073 57 15 417 1467 69707188 69708250 0.000000e+00 1459
6 TraesCS6D01G067500 chr5B 83.117 231 31 4 54 278 642143338 642143566 1.300000e-48 204
7 TraesCS6D01G067500 chr4D 80.498 241 37 7 54 287 69656664 69656427 2.830000e-40 176
8 TraesCS6D01G067500 chr4D 79.235 183 31 4 55 231 337999948 337999767 1.350000e-23 121
9 TraesCS6D01G067500 chr2D 83.246 191 22 8 55 237 209113408 209113220 1.710000e-37 167
10 TraesCS6D01G067500 chr1D 82.796 186 23 7 57 235 10419525 10419708 1.030000e-34 158
11 TraesCS6D01G067500 chr1D 81.098 164 24 5 75 233 16288783 16288944 1.040000e-24 124
12 TraesCS6D01G067500 chr3D 80.791 177 28 3 49 220 597753550 597753725 1.730000e-27 134
13 TraesCS6D01G067500 chr3D 79.167 192 32 6 48 233 299627112 299627301 2.890000e-25 126
14 TraesCS6D01G067500 chr5D 80.337 178 26 6 54 224 464555287 464555112 2.890000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G067500 chr6D 33141286 33144053 2767 False 5112 5112 100.000000 1 2768 1 chr6D.!!$F1 2767
1 TraesCS6D01G067500 chr6A 37700015 37703674 3659 False 1068 1657 90.655667 427 2766 3 chr6A.!!$F1 2339
2 TraesCS6D01G067500 chr6B 69707188 69709725 2537 False 1475 1491 92.024500 417 2555 2 chr6B.!!$F1 2138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.032912 TGCCCATCAATGATGCCAGT 60.033 50.0 17.27 0.0 38.59 4.00 F
309 310 0.041312 GCTGTGCGTTGTCAATCGTT 60.041 50.0 8.60 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 2019 1.447838 GCCGCAGCTGTAGCAGTTA 60.448 57.895 20.84 0.0 45.16 2.24 R
2244 2943 3.764237 TCGCCTTCCAAACTCTACTTT 57.236 42.857 0.00 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.559148 AAGATCCATTGGAGACATACCTC 57.441 43.478 11.78 1.23 42.32 3.85
30 31 2.246719 GAGACATACCTCCACATGCC 57.753 55.000 0.00 0.00 0.00 4.40
31 32 0.839946 AGACATACCTCCACATGCCC 59.160 55.000 0.00 0.00 0.00 5.36
32 33 0.546122 GACATACCTCCACATGCCCA 59.454 55.000 0.00 0.00 0.00 5.36
33 34 1.143684 GACATACCTCCACATGCCCAT 59.856 52.381 0.00 0.00 0.00 4.00
34 35 1.143684 ACATACCTCCACATGCCCATC 59.856 52.381 0.00 0.00 0.00 3.51
35 36 1.143481 CATACCTCCACATGCCCATCA 59.857 52.381 0.00 0.00 0.00 3.07
36 37 1.294041 TACCTCCACATGCCCATCAA 58.706 50.000 0.00 0.00 0.00 2.57
37 38 0.632835 ACCTCCACATGCCCATCAAT 59.367 50.000 0.00 0.00 0.00 2.57
38 39 1.037493 CCTCCACATGCCCATCAATG 58.963 55.000 0.00 0.00 0.00 2.82
39 40 1.410507 CCTCCACATGCCCATCAATGA 60.411 52.381 0.00 0.00 0.00 2.57
40 41 2.594131 CTCCACATGCCCATCAATGAT 58.406 47.619 0.00 0.00 0.00 2.45
41 42 2.296190 CTCCACATGCCCATCAATGATG 59.704 50.000 15.88 15.88 39.52 3.07
42 43 1.270094 CCACATGCCCATCAATGATGC 60.270 52.381 17.27 8.06 38.59 3.91
43 44 1.045407 ACATGCCCATCAATGATGCC 58.955 50.000 17.27 10.68 38.59 4.40
44 45 1.044611 CATGCCCATCAATGATGCCA 58.955 50.000 17.27 15.46 38.59 4.92
45 46 1.000843 CATGCCCATCAATGATGCCAG 59.999 52.381 17.27 9.27 38.59 4.85
46 47 0.032912 TGCCCATCAATGATGCCAGT 60.033 50.000 17.27 0.00 38.59 4.00
47 48 1.214923 TGCCCATCAATGATGCCAGTA 59.785 47.619 17.27 5.45 38.59 2.74
48 49 1.884579 GCCCATCAATGATGCCAGTAG 59.115 52.381 17.27 3.14 38.59 2.57
49 50 2.511659 CCCATCAATGATGCCAGTAGG 58.488 52.381 17.27 8.41 38.59 3.18
50 51 2.107031 CCCATCAATGATGCCAGTAGGA 59.893 50.000 17.27 0.00 38.59 2.94
51 52 3.144506 CCATCAATGATGCCAGTAGGAC 58.855 50.000 17.27 0.00 38.59 3.85
52 53 2.602257 TCAATGATGCCAGTAGGACG 57.398 50.000 0.00 0.00 36.89 4.79
53 54 1.138859 TCAATGATGCCAGTAGGACGG 59.861 52.381 0.00 0.00 36.89 4.79
54 55 0.469917 AATGATGCCAGTAGGACGGG 59.530 55.000 0.00 0.00 36.48 5.28
55 56 1.410850 ATGATGCCAGTAGGACGGGG 61.411 60.000 0.00 0.00 33.85 5.73
56 57 2.768344 ATGCCAGTAGGACGGGGG 60.768 66.667 0.00 0.00 33.85 5.40
70 71 3.661648 GGGGGCAGGCAGGAAGAA 61.662 66.667 0.00 0.00 0.00 2.52
71 72 2.361737 GGGGCAGGCAGGAAGAAC 60.362 66.667 0.00 0.00 0.00 3.01
72 73 2.361737 GGGCAGGCAGGAAGAACC 60.362 66.667 0.00 0.00 39.35 3.62
87 88 6.934048 GGAAGAACCTTATTCCATCTTCAG 57.066 41.667 13.81 0.00 45.49 3.02
88 89 5.825151 GGAAGAACCTTATTCCATCTTCAGG 59.175 44.000 13.81 0.00 45.49 3.86
89 90 5.379706 AGAACCTTATTCCATCTTCAGGG 57.620 43.478 0.00 0.00 0.00 4.45
90 91 5.039645 AGAACCTTATTCCATCTTCAGGGA 58.960 41.667 0.00 0.00 0.00 4.20
91 92 5.492524 AGAACCTTATTCCATCTTCAGGGAA 59.507 40.000 0.00 0.00 46.48 3.97
92 93 5.117406 ACCTTATTCCATCTTCAGGGAAC 57.883 43.478 0.00 0.00 45.35 3.62
93 94 4.790790 ACCTTATTCCATCTTCAGGGAACT 59.209 41.667 0.00 0.00 45.35 3.01
106 107 4.719369 GAACTGCCGCCGTCTCGT 62.719 66.667 0.00 0.00 0.00 4.18
107 108 4.719369 AACTGCCGCCGTCTCGTC 62.719 66.667 0.00 0.00 0.00 4.20
109 110 4.421479 CTGCCGCCGTCTCGTCTT 62.421 66.667 0.00 0.00 0.00 3.01
110 111 3.047718 CTGCCGCCGTCTCGTCTTA 62.048 63.158 0.00 0.00 0.00 2.10
111 112 2.578981 GCCGCCGTCTCGTCTTAC 60.579 66.667 0.00 0.00 0.00 2.34
112 113 2.872557 CCGCCGTCTCGTCTTACA 59.127 61.111 0.00 0.00 0.00 2.41
113 114 1.226323 CCGCCGTCTCGTCTTACAG 60.226 63.158 0.00 0.00 0.00 2.74
114 115 1.226323 CGCCGTCTCGTCTTACAGG 60.226 63.158 0.00 0.00 0.00 4.00
115 116 1.642037 CGCCGTCTCGTCTTACAGGA 61.642 60.000 0.00 0.00 0.00 3.86
116 117 0.179169 GCCGTCTCGTCTTACAGGAC 60.179 60.000 0.00 0.00 0.00 3.85
117 118 1.162698 CCGTCTCGTCTTACAGGACA 58.837 55.000 0.00 0.00 36.12 4.02
118 119 1.135746 CCGTCTCGTCTTACAGGACAC 60.136 57.143 0.00 0.00 36.12 3.67
119 120 1.534163 CGTCTCGTCTTACAGGACACA 59.466 52.381 0.00 0.00 36.12 3.72
120 121 2.031420 CGTCTCGTCTTACAGGACACAA 60.031 50.000 0.00 0.00 36.12 3.33
121 122 3.549423 CGTCTCGTCTTACAGGACACAAA 60.549 47.826 0.00 0.00 36.12 2.83
122 123 3.734735 GTCTCGTCTTACAGGACACAAAC 59.265 47.826 0.00 0.00 36.12 2.93
123 124 3.057734 CTCGTCTTACAGGACACAAACC 58.942 50.000 0.00 0.00 36.12 3.27
124 125 2.140717 CGTCTTACAGGACACAAACCC 58.859 52.381 0.00 0.00 36.12 4.11
125 126 2.224209 CGTCTTACAGGACACAAACCCT 60.224 50.000 0.00 0.00 36.12 4.34
126 127 3.006110 CGTCTTACAGGACACAAACCCTA 59.994 47.826 0.00 0.00 36.12 3.53
127 128 4.501915 CGTCTTACAGGACACAAACCCTAA 60.502 45.833 0.00 0.00 36.12 2.69
128 129 4.753610 GTCTTACAGGACACAAACCCTAAC 59.246 45.833 0.00 0.00 36.35 2.34
129 130 4.409574 TCTTACAGGACACAAACCCTAACA 59.590 41.667 0.00 0.00 0.00 2.41
130 131 3.876309 ACAGGACACAAACCCTAACAT 57.124 42.857 0.00 0.00 0.00 2.71
131 132 4.986054 ACAGGACACAAACCCTAACATA 57.014 40.909 0.00 0.00 0.00 2.29
132 133 5.313280 ACAGGACACAAACCCTAACATAA 57.687 39.130 0.00 0.00 0.00 1.90
133 134 5.067954 ACAGGACACAAACCCTAACATAAC 58.932 41.667 0.00 0.00 0.00 1.89
134 135 5.163131 ACAGGACACAAACCCTAACATAACT 60.163 40.000 0.00 0.00 0.00 2.24
135 136 5.411669 CAGGACACAAACCCTAACATAACTC 59.588 44.000 0.00 0.00 0.00 3.01
136 137 5.309806 AGGACACAAACCCTAACATAACTCT 59.690 40.000 0.00 0.00 0.00 3.24
137 138 5.411669 GGACACAAACCCTAACATAACTCTG 59.588 44.000 0.00 0.00 0.00 3.35
138 139 6.182507 ACACAAACCCTAACATAACTCTGA 57.817 37.500 0.00 0.00 0.00 3.27
139 140 6.597562 ACACAAACCCTAACATAACTCTGAA 58.402 36.000 0.00 0.00 0.00 3.02
140 141 6.710744 ACACAAACCCTAACATAACTCTGAAG 59.289 38.462 0.00 0.00 0.00 3.02
141 142 6.934645 CACAAACCCTAACATAACTCTGAAGA 59.065 38.462 0.00 0.00 0.00 2.87
142 143 7.444183 CACAAACCCTAACATAACTCTGAAGAA 59.556 37.037 0.00 0.00 0.00 2.52
143 144 7.996644 ACAAACCCTAACATAACTCTGAAGAAA 59.003 33.333 0.00 0.00 0.00 2.52
144 145 7.981102 AACCCTAACATAACTCTGAAGAAAC 57.019 36.000 0.00 0.00 0.00 2.78
145 146 6.473758 ACCCTAACATAACTCTGAAGAAACC 58.526 40.000 0.00 0.00 0.00 3.27
146 147 6.272558 ACCCTAACATAACTCTGAAGAAACCT 59.727 38.462 0.00 0.00 0.00 3.50
147 148 7.456902 ACCCTAACATAACTCTGAAGAAACCTA 59.543 37.037 0.00 0.00 0.00 3.08
148 149 8.487028 CCCTAACATAACTCTGAAGAAACCTAT 58.513 37.037 0.00 0.00 0.00 2.57
156 157 8.494016 AACTCTGAAGAAACCTATAAAATCGG 57.506 34.615 0.00 0.00 0.00 4.18
157 158 7.848128 ACTCTGAAGAAACCTATAAAATCGGA 58.152 34.615 0.00 0.00 0.00 4.55
158 159 7.982354 ACTCTGAAGAAACCTATAAAATCGGAG 59.018 37.037 0.00 0.00 42.18 4.63
159 160 6.761714 TCTGAAGAAACCTATAAAATCGGAGC 59.238 38.462 0.00 0.00 0.00 4.70
160 161 5.820947 TGAAGAAACCTATAAAATCGGAGCC 59.179 40.000 0.00 0.00 0.00 4.70
161 162 5.367945 AGAAACCTATAAAATCGGAGCCA 57.632 39.130 0.00 0.00 0.00 4.75
162 163 5.941788 AGAAACCTATAAAATCGGAGCCAT 58.058 37.500 0.00 0.00 0.00 4.40
163 164 5.998363 AGAAACCTATAAAATCGGAGCCATC 59.002 40.000 0.00 0.00 0.00 3.51
164 165 4.287766 ACCTATAAAATCGGAGCCATCC 57.712 45.455 0.00 0.00 42.81 3.51
165 166 3.009143 ACCTATAAAATCGGAGCCATCCC 59.991 47.826 0.00 0.00 43.39 3.85
167 168 0.534203 TAAAATCGGAGCCATCCCGC 60.534 55.000 0.00 0.00 46.10 6.13
168 169 3.774599 AAATCGGAGCCATCCCGCC 62.775 63.158 0.00 0.00 46.10 6.13
185 186 3.470888 CGGCAAGGGTCGGGATCT 61.471 66.667 0.00 0.00 38.79 2.75
186 187 2.190578 GGCAAGGGTCGGGATCTG 59.809 66.667 0.00 0.00 0.00 2.90
187 188 2.670148 GGCAAGGGTCGGGATCTGT 61.670 63.158 0.00 0.00 0.00 3.41
188 189 1.153349 GCAAGGGTCGGGATCTGTC 60.153 63.158 0.00 0.00 0.00 3.51
189 190 1.141881 CAAGGGTCGGGATCTGTCG 59.858 63.158 0.00 0.00 0.00 4.35
190 191 2.722201 AAGGGTCGGGATCTGTCGC 61.722 63.158 0.00 0.00 0.00 5.19
198 199 4.241555 GATCTGTCGCGCCCCCAT 62.242 66.667 0.00 0.00 0.00 4.00
199 200 4.552365 ATCTGTCGCGCCCCCATG 62.552 66.667 0.00 0.00 0.00 3.66
206 207 3.804329 GCGCCCCCATGACCCTAA 61.804 66.667 0.00 0.00 0.00 2.69
207 208 2.510906 CGCCCCCATGACCCTAAG 59.489 66.667 0.00 0.00 0.00 2.18
208 209 2.927056 GCCCCCATGACCCTAAGG 59.073 66.667 0.00 0.00 40.04 2.69
209 210 2.927056 CCCCCATGACCCTAAGGC 59.073 66.667 0.00 0.00 36.11 4.35
210 211 2.768022 CCCCCATGACCCTAAGGCC 61.768 68.421 0.00 0.00 36.11 5.19
211 212 2.006415 CCCCATGACCCTAAGGCCA 61.006 63.158 5.01 0.00 36.11 5.36
212 213 1.227383 CCCATGACCCTAAGGCCAC 59.773 63.158 5.01 0.00 36.11 5.01
213 214 1.227383 CCATGACCCTAAGGCCACC 59.773 63.158 5.01 0.00 36.11 4.61
214 215 1.153168 CATGACCCTAAGGCCACCG 60.153 63.158 5.01 0.00 36.11 4.94
215 216 2.375345 ATGACCCTAAGGCCACCGG 61.375 63.158 5.01 0.00 36.11 5.28
216 217 2.686106 GACCCTAAGGCCACCGGA 60.686 66.667 9.46 0.00 36.11 5.14
217 218 2.687566 ACCCTAAGGCCACCGGAG 60.688 66.667 9.46 0.00 36.11 4.63
218 219 2.365105 CCCTAAGGCCACCGGAGA 60.365 66.667 9.46 0.00 0.00 3.71
219 220 2.732619 CCCTAAGGCCACCGGAGAC 61.733 68.421 9.46 0.00 0.00 3.36
220 221 1.987855 CCTAAGGCCACCGGAGACA 60.988 63.158 9.46 0.00 0.00 3.41
221 222 1.550130 CCTAAGGCCACCGGAGACAA 61.550 60.000 9.46 0.00 0.00 3.18
222 223 0.108138 CTAAGGCCACCGGAGACAAG 60.108 60.000 9.46 0.00 0.00 3.16
223 224 1.550130 TAAGGCCACCGGAGACAAGG 61.550 60.000 9.46 0.54 0.00 3.61
224 225 3.637273 GGCCACCGGAGACAAGGT 61.637 66.667 9.46 0.00 42.34 3.50
228 229 3.468063 ACCGGAGACAAGGTGGAC 58.532 61.111 9.46 0.00 39.66 4.02
229 230 2.214920 ACCGGAGACAAGGTGGACC 61.215 63.158 9.46 0.00 39.66 4.46
230 231 2.261671 CGGAGACAAGGTGGACCG 59.738 66.667 0.00 0.00 42.08 4.79
231 232 2.663196 GGAGACAAGGTGGACCGG 59.337 66.667 0.00 0.00 42.08 5.28
232 233 2.047179 GAGACAAGGTGGACCGGC 60.047 66.667 0.00 0.00 42.08 6.13
233 234 3.934391 GAGACAAGGTGGACCGGCG 62.934 68.421 0.00 0.00 42.08 6.46
253 254 2.181021 GGCGTCGGCGGGATATAG 59.819 66.667 13.05 0.00 41.24 1.31
254 255 2.338015 GGCGTCGGCGGGATATAGA 61.338 63.158 13.05 0.00 41.24 1.98
255 256 1.136984 GCGTCGGCGGGATATAGAG 59.863 63.158 13.05 0.00 38.78 2.43
256 257 1.801332 CGTCGGCGGGATATAGAGG 59.199 63.158 7.21 0.00 0.00 3.69
257 258 0.675837 CGTCGGCGGGATATAGAGGA 60.676 60.000 7.21 0.00 0.00 3.71
258 259 1.096416 GTCGGCGGGATATAGAGGAG 58.904 60.000 7.21 0.00 0.00 3.69
259 260 0.680280 TCGGCGGGATATAGAGGAGC 60.680 60.000 7.21 0.00 0.00 4.70
260 261 1.668101 CGGCGGGATATAGAGGAGCC 61.668 65.000 0.00 0.00 39.68 4.70
261 262 1.331399 GGCGGGATATAGAGGAGCCC 61.331 65.000 0.00 0.00 37.32 5.19
262 263 0.324830 GCGGGATATAGAGGAGCCCT 60.325 60.000 0.00 0.00 36.62 5.19
263 264 1.063867 GCGGGATATAGAGGAGCCCTA 60.064 57.143 0.00 0.00 36.62 3.53
264 265 2.938838 CGGGATATAGAGGAGCCCTAG 58.061 57.143 0.00 0.00 36.62 3.02
265 266 2.242708 CGGGATATAGAGGAGCCCTAGT 59.757 54.545 0.00 0.00 36.62 2.57
266 267 3.686120 CGGGATATAGAGGAGCCCTAGTC 60.686 56.522 0.00 0.00 36.62 2.59
267 268 3.530149 GGGATATAGAGGAGCCCTAGTCT 59.470 52.174 0.00 0.00 35.86 3.24
268 269 4.385977 GGGATATAGAGGAGCCCTAGTCTC 60.386 54.167 0.00 1.71 35.86 3.36
269 270 4.477213 GGATATAGAGGAGCCCTAGTCTCT 59.523 50.000 8.56 0.00 39.57 3.10
270 271 5.044402 GGATATAGAGGAGCCCTAGTCTCTT 60.044 48.000 8.56 2.38 37.68 2.85
271 272 4.825199 ATAGAGGAGCCCTAGTCTCTTT 57.175 45.455 8.56 0.00 37.68 2.52
272 273 3.483255 AGAGGAGCCCTAGTCTCTTTT 57.517 47.619 8.56 0.00 33.28 2.27
273 274 3.797312 AGAGGAGCCCTAGTCTCTTTTT 58.203 45.455 8.56 0.00 33.28 1.94
288 289 4.519610 TTTTTGGGAGGAGGCAGC 57.480 55.556 0.00 0.00 0.00 5.25
289 290 1.603455 TTTTTGGGAGGAGGCAGCG 60.603 57.895 0.00 0.00 0.00 5.18
290 291 3.567579 TTTTGGGAGGAGGCAGCGG 62.568 63.158 0.00 0.00 0.00 5.52
302 303 4.374702 CAGCGGCTGTGCGTTGTC 62.375 66.667 21.60 0.00 40.67 3.18
303 304 4.908687 AGCGGCTGTGCGTTGTCA 62.909 61.111 0.00 0.00 40.67 3.58
304 305 3.947841 GCGGCTGTGCGTTGTCAA 61.948 61.111 0.00 0.00 0.00 3.18
305 306 2.945984 CGGCTGTGCGTTGTCAAT 59.054 55.556 0.00 0.00 0.00 2.57
306 307 1.154413 CGGCTGTGCGTTGTCAATC 60.154 57.895 0.00 0.00 0.00 2.67
307 308 1.154413 GGCTGTGCGTTGTCAATCG 60.154 57.895 0.00 0.00 0.00 3.34
308 309 1.569493 GCTGTGCGTTGTCAATCGT 59.431 52.632 8.60 0.00 0.00 3.73
309 310 0.041312 GCTGTGCGTTGTCAATCGTT 60.041 50.000 8.60 0.00 0.00 3.85
310 311 1.662360 CTGTGCGTTGTCAATCGTTG 58.338 50.000 8.60 0.00 0.00 4.10
311 312 1.003972 CTGTGCGTTGTCAATCGTTGT 60.004 47.619 8.60 0.00 0.00 3.32
312 313 1.398739 TGTGCGTTGTCAATCGTTGTT 59.601 42.857 8.60 0.00 0.00 2.83
313 314 1.772966 GTGCGTTGTCAATCGTTGTTG 59.227 47.619 8.60 0.00 0.00 3.33
314 315 0.770008 GCGTTGTCAATCGTTGTTGC 59.230 50.000 8.60 0.00 0.00 4.17
315 316 1.858000 GCGTTGTCAATCGTTGTTGCA 60.858 47.619 8.60 0.00 0.00 4.08
316 317 2.445316 CGTTGTCAATCGTTGTTGCAA 58.555 42.857 0.00 0.00 0.00 4.08
317 318 2.213131 CGTTGTCAATCGTTGTTGCAAC 59.787 45.455 22.83 22.83 39.67 4.17
318 319 3.434637 GTTGTCAATCGTTGTTGCAACT 58.565 40.909 28.61 6.80 39.79 3.16
319 320 3.773860 TGTCAATCGTTGTTGCAACTT 57.226 38.095 28.61 12.68 0.00 2.66
320 321 3.433709 TGTCAATCGTTGTTGCAACTTG 58.566 40.909 28.61 22.60 0.00 3.16
321 322 3.119673 TGTCAATCGTTGTTGCAACTTGT 60.120 39.130 28.61 9.05 0.00 3.16
322 323 3.240401 GTCAATCGTTGTTGCAACTTGTG 59.760 43.478 28.61 17.23 0.00 3.33
323 324 2.490328 ATCGTTGTTGCAACTTGTGG 57.510 45.000 28.61 14.05 0.00 4.17
324 325 0.453793 TCGTTGTTGCAACTTGTGGG 59.546 50.000 28.61 12.78 0.00 4.61
325 326 0.453793 CGTTGTTGCAACTTGTGGGA 59.546 50.000 28.61 5.26 0.00 4.37
326 327 1.135257 CGTTGTTGCAACTTGTGGGAA 60.135 47.619 28.61 11.25 0.00 3.97
327 328 2.672478 CGTTGTTGCAACTTGTGGGAAA 60.672 45.455 28.61 10.53 0.00 3.13
328 329 2.929398 GTTGTTGCAACTTGTGGGAAAG 59.071 45.455 28.61 0.00 0.00 2.62
329 330 2.175202 TGTTGCAACTTGTGGGAAAGT 58.825 42.857 28.61 0.00 42.21 2.66
330 331 2.094286 TGTTGCAACTTGTGGGAAAGTG 60.094 45.455 28.61 0.00 40.28 3.16
331 332 2.136298 TGCAACTTGTGGGAAAGTGA 57.864 45.000 0.00 0.00 40.28 3.41
332 333 2.023673 TGCAACTTGTGGGAAAGTGAG 58.976 47.619 0.00 0.00 40.28 3.51
333 334 2.297701 GCAACTTGTGGGAAAGTGAGA 58.702 47.619 0.00 0.00 40.28 3.27
334 335 2.687935 GCAACTTGTGGGAAAGTGAGAA 59.312 45.455 0.00 0.00 40.28 2.87
335 336 3.243201 GCAACTTGTGGGAAAGTGAGAAG 60.243 47.826 0.00 0.00 40.28 2.85
336 337 4.199310 CAACTTGTGGGAAAGTGAGAAGA 58.801 43.478 0.00 0.00 40.28 2.87
337 338 4.503714 ACTTGTGGGAAAGTGAGAAGAA 57.496 40.909 0.00 0.00 38.95 2.52
338 339 4.855340 ACTTGTGGGAAAGTGAGAAGAAA 58.145 39.130 0.00 0.00 38.95 2.52
339 340 4.884164 ACTTGTGGGAAAGTGAGAAGAAAG 59.116 41.667 0.00 0.00 38.95 2.62
340 341 4.771114 TGTGGGAAAGTGAGAAGAAAGA 57.229 40.909 0.00 0.00 0.00 2.52
341 342 4.451900 TGTGGGAAAGTGAGAAGAAAGAC 58.548 43.478 0.00 0.00 0.00 3.01
342 343 4.164221 TGTGGGAAAGTGAGAAGAAAGACT 59.836 41.667 0.00 0.00 0.00 3.24
343 344 5.365605 TGTGGGAAAGTGAGAAGAAAGACTA 59.634 40.000 0.00 0.00 0.00 2.59
344 345 6.043243 TGTGGGAAAGTGAGAAGAAAGACTAT 59.957 38.462 0.00 0.00 0.00 2.12
345 346 7.234782 TGTGGGAAAGTGAGAAGAAAGACTATA 59.765 37.037 0.00 0.00 0.00 1.31
346 347 7.546316 GTGGGAAAGTGAGAAGAAAGACTATAC 59.454 40.741 0.00 0.00 0.00 1.47
347 348 6.752815 GGGAAAGTGAGAAGAAAGACTATACG 59.247 42.308 0.00 0.00 0.00 3.06
348 349 7.362747 GGGAAAGTGAGAAGAAAGACTATACGA 60.363 40.741 0.00 0.00 0.00 3.43
349 350 8.192110 GGAAAGTGAGAAGAAAGACTATACGAT 58.808 37.037 0.00 0.00 0.00 3.73
350 351 8.918961 AAAGTGAGAAGAAAGACTATACGATG 57.081 34.615 0.00 0.00 0.00 3.84
351 352 6.500041 AGTGAGAAGAAAGACTATACGATGC 58.500 40.000 0.00 0.00 0.00 3.91
352 353 5.396947 GTGAGAAGAAAGACTATACGATGCG 59.603 44.000 0.00 0.00 0.00 4.73
353 354 4.291783 AGAAGAAAGACTATACGATGCGC 58.708 43.478 0.00 0.00 0.00 6.09
354 355 3.710326 AGAAAGACTATACGATGCGCA 57.290 42.857 14.96 14.96 0.00 6.09
355 356 4.244425 AGAAAGACTATACGATGCGCAT 57.756 40.909 25.66 25.66 0.00 4.73
356 357 4.230657 AGAAAGACTATACGATGCGCATC 58.769 43.478 35.20 35.20 34.56 3.91
357 358 3.643159 AAGACTATACGATGCGCATCA 57.357 42.857 40.42 27.55 37.69 3.07
358 359 3.857549 AGACTATACGATGCGCATCAT 57.142 42.857 40.42 32.97 37.69 2.45
359 360 3.505836 AGACTATACGATGCGCATCATG 58.494 45.455 40.42 30.11 37.69 3.07
360 361 3.191371 AGACTATACGATGCGCATCATGA 59.809 43.478 40.42 28.14 37.69 3.07
361 362 3.913089 ACTATACGATGCGCATCATGAA 58.087 40.909 40.42 26.02 37.69 2.57
362 363 4.498241 ACTATACGATGCGCATCATGAAT 58.502 39.130 40.42 29.45 37.69 2.57
363 364 4.564372 ACTATACGATGCGCATCATGAATC 59.436 41.667 40.42 20.82 37.69 2.52
364 365 1.585297 ACGATGCGCATCATGAATCA 58.415 45.000 40.42 5.12 37.69 2.57
365 366 1.529865 ACGATGCGCATCATGAATCAG 59.470 47.619 40.42 26.99 37.69 2.90
366 367 1.796459 CGATGCGCATCATGAATCAGA 59.204 47.619 40.42 4.33 37.69 3.27
367 368 2.415512 CGATGCGCATCATGAATCAGAT 59.584 45.455 40.42 11.12 37.69 2.90
368 369 3.725010 CGATGCGCATCATGAATCAGATG 60.725 47.826 40.42 21.30 43.42 2.90
369 370 1.877443 TGCGCATCATGAATCAGATGG 59.123 47.619 5.66 11.93 41.43 3.51
370 371 1.401148 GCGCATCATGAATCAGATGGC 60.401 52.381 17.75 15.62 41.43 4.40
371 372 2.152016 CGCATCATGAATCAGATGGCT 58.848 47.619 17.75 0.00 41.43 4.75
372 373 2.159824 CGCATCATGAATCAGATGGCTC 59.840 50.000 17.75 6.71 41.43 4.70
373 374 2.159824 GCATCATGAATCAGATGGCTCG 59.840 50.000 17.75 0.00 41.43 5.03
374 375 3.400255 CATCATGAATCAGATGGCTCGT 58.600 45.455 0.00 0.00 38.33 4.18
375 376 2.830104 TCATGAATCAGATGGCTCGTG 58.170 47.619 0.00 0.00 0.00 4.35
376 377 1.871676 CATGAATCAGATGGCTCGTGG 59.128 52.381 0.00 0.00 0.00 4.94
377 378 0.178767 TGAATCAGATGGCTCGTGGG 59.821 55.000 0.00 0.00 0.00 4.61
378 379 1.153086 AATCAGATGGCTCGTGGGC 60.153 57.895 0.00 0.00 41.27 5.36
397 398 1.821216 CCGGCTGGCTTTTAGAAAGA 58.179 50.000 0.00 0.00 0.00 2.52
398 399 1.468914 CCGGCTGGCTTTTAGAAAGAC 59.531 52.381 0.00 2.06 0.00 3.01
399 400 1.468914 CGGCTGGCTTTTAGAAAGACC 59.531 52.381 3.97 5.65 0.00 3.85
400 401 2.796557 GGCTGGCTTTTAGAAAGACCT 58.203 47.619 3.97 0.00 0.00 3.85
401 402 3.618997 CGGCTGGCTTTTAGAAAGACCTA 60.619 47.826 3.97 0.00 0.00 3.08
402 403 3.942115 GGCTGGCTTTTAGAAAGACCTAG 59.058 47.826 3.97 0.00 0.00 3.02
403 404 3.375610 GCTGGCTTTTAGAAAGACCTAGC 59.624 47.826 3.97 3.83 0.00 3.42
404 405 4.579869 CTGGCTTTTAGAAAGACCTAGCA 58.420 43.478 3.97 0.00 0.00 3.49
405 406 4.324267 TGGCTTTTAGAAAGACCTAGCAC 58.676 43.478 3.97 0.00 0.00 4.40
406 407 3.371285 GGCTTTTAGAAAGACCTAGCACG 59.629 47.826 4.69 0.00 0.00 5.34
407 408 3.181519 GCTTTTAGAAAGACCTAGCACGC 60.182 47.826 4.69 0.00 0.00 5.34
408 409 2.667473 TTAGAAAGACCTAGCACGCC 57.333 50.000 0.00 0.00 0.00 5.68
409 410 0.822164 TAGAAAGACCTAGCACGCCC 59.178 55.000 0.00 0.00 0.00 6.13
410 411 1.449778 GAAAGACCTAGCACGCCCC 60.450 63.158 0.00 0.00 0.00 5.80
411 412 1.900545 GAAAGACCTAGCACGCCCCT 61.901 60.000 0.00 0.00 0.00 4.79
412 413 1.900545 AAAGACCTAGCACGCCCCTC 61.901 60.000 0.00 0.00 0.00 4.30
413 414 3.851128 GACCTAGCACGCCCCTCC 61.851 72.222 0.00 0.00 0.00 4.30
414 415 4.400251 ACCTAGCACGCCCCTCCT 62.400 66.667 0.00 0.00 0.00 3.69
415 416 3.083997 CCTAGCACGCCCCTCCTT 61.084 66.667 0.00 0.00 0.00 3.36
425 426 2.299013 ACGCCCCTCCTTTTTGAAAATC 59.701 45.455 0.00 0.00 0.00 2.17
438 439 5.713792 TTTGAAAATCGCTATGGAACCAA 57.286 34.783 0.00 0.00 0.00 3.67
441 442 5.708948 TGAAAATCGCTATGGAACCAAAAG 58.291 37.500 0.00 0.30 0.00 2.27
442 443 3.782889 AATCGCTATGGAACCAAAAGC 57.217 42.857 16.46 16.46 36.37 3.51
443 444 2.192664 TCGCTATGGAACCAAAAGCA 57.807 45.000 22.22 12.28 38.27 3.91
444 445 2.509569 TCGCTATGGAACCAAAAGCAA 58.490 42.857 22.22 9.19 38.27 3.91
446 447 3.509575 TCGCTATGGAACCAAAAGCAAAT 59.490 39.130 22.22 0.21 38.27 2.32
447 448 4.021544 TCGCTATGGAACCAAAAGCAAATT 60.022 37.500 22.22 0.00 38.27 1.82
448 449 4.091800 CGCTATGGAACCAAAAGCAAATTG 59.908 41.667 22.22 9.19 38.27 2.32
456 457 6.367149 GGAACCAAAAGCAAATTGAGATTCTC 59.633 38.462 6.73 6.73 0.00 2.87
548 551 4.853924 TCTCTTTTTGAAACAGATGCCC 57.146 40.909 0.00 0.00 0.00 5.36
578 581 3.002583 TGCATGGTCCTGGCTCGA 61.003 61.111 0.00 0.00 0.00 4.04
642 647 1.333636 CGGATCCAGCAACCTCCTCT 61.334 60.000 13.41 0.00 0.00 3.69
762 776 3.775654 CACGTCAGCCTCCTCCCC 61.776 72.222 0.00 0.00 0.00 4.81
874 889 1.519751 CTCCCTCCGCTCCTCGTATG 61.520 65.000 0.00 0.00 36.19 2.39
1353 1390 1.456331 CGGGTACGGAGGTGGGTAT 60.456 63.158 0.00 0.00 36.18 2.73
1607 2030 2.165301 GCGGCGGTAACTGCTACAG 61.165 63.158 9.78 0.00 38.96 2.74
1735 2408 4.129737 GCTACCACTGCGGCGAGA 62.130 66.667 12.98 0.00 39.03 4.04
1977 2666 8.947055 ATGGTTAATTTTGCTATGAATTGGTC 57.053 30.769 0.00 0.00 0.00 4.02
2012 2701 2.492484 ACCCGTACTCTCAGTTGATGTC 59.508 50.000 0.00 0.00 0.00 3.06
2077 2766 3.943381 TGATGATGAGGAGATTGCAACAC 59.057 43.478 0.00 0.00 0.00 3.32
2142 2833 6.102663 GGTCGTTATTATCATCCTCCATGAG 58.897 44.000 0.00 0.00 45.11 2.90
2193 2892 4.410555 TCAGATCTCTGCTCTAGTGGTAGA 59.589 45.833 2.21 0.00 43.46 2.59
2201 2900 7.716123 TCTCTGCTCTAGTGGTAGAACTATTAC 59.284 40.741 7.38 0.00 34.73 1.89
2211 2910 6.602406 GTGGTAGAACTATTACCTCTGTCTGA 59.398 42.308 3.40 0.00 40.97 3.27
2221 2920 2.975489 ACCTCTGTCTGACATCCTGTTT 59.025 45.455 11.45 0.00 0.00 2.83
2222 2921 3.244353 ACCTCTGTCTGACATCCTGTTTG 60.244 47.826 11.45 0.00 0.00 2.93
2224 2923 4.384056 CTCTGTCTGACATCCTGTTTGTT 58.616 43.478 11.45 0.00 0.00 2.83
2226 2925 5.924356 TCTGTCTGACATCCTGTTTGTTAA 58.076 37.500 11.45 0.00 0.00 2.01
2227 2926 6.533730 TCTGTCTGACATCCTGTTTGTTAAT 58.466 36.000 11.45 0.00 0.00 1.40
2228 2927 6.998074 TCTGTCTGACATCCTGTTTGTTAATT 59.002 34.615 11.45 0.00 0.00 1.40
2229 2928 6.969366 TGTCTGACATCCTGTTTGTTAATTG 58.031 36.000 6.36 0.00 0.00 2.32
2230 2929 6.770303 TGTCTGACATCCTGTTTGTTAATTGA 59.230 34.615 6.36 0.00 0.00 2.57
2231 2930 7.448161 TGTCTGACATCCTGTTTGTTAATTGAT 59.552 33.333 6.36 0.00 0.00 2.57
2232 2931 8.299570 GTCTGACATCCTGTTTGTTAATTGATT 58.700 33.333 2.24 0.00 0.00 2.57
2233 2932 9.513906 TCTGACATCCTGTTTGTTAATTGATTA 57.486 29.630 0.00 0.00 0.00 1.75
2262 2961 6.819397 ATGTTAAAGTAGAGTTTGGAAGGC 57.181 37.500 0.00 0.00 0.00 4.35
2330 3032 1.692411 AAGTGAGGTTTTGTCTGGGC 58.308 50.000 0.00 0.00 0.00 5.36
2331 3033 0.846693 AGTGAGGTTTTGTCTGGGCT 59.153 50.000 0.00 0.00 0.00 5.19
2370 3073 4.969816 AGTTTTTACTGGATTTGCGATCG 58.030 39.130 11.69 11.69 0.00 3.69
2388 3091 0.542805 CGACCCTTTTAATCCGGGGA 59.457 55.000 0.00 0.00 42.44 4.81
2461 3165 1.529244 GCCCTGTCTGGTGCTGTTT 60.529 57.895 0.00 0.00 0.00 2.83
2502 3206 2.363038 AGTGTCTAGTGGTTGCGTTGTA 59.637 45.455 0.00 0.00 0.00 2.41
2511 3215 4.277423 AGTGGTTGCGTTGTATTTAAGCTT 59.723 37.500 3.48 3.48 0.00 3.74
2578 3283 6.591834 GTCCATATACATCTCCAGCACAATAC 59.408 42.308 0.00 0.00 0.00 1.89
2587 4354 4.067896 CTCCAGCACAATACAGAAGTTGT 58.932 43.478 0.00 0.00 43.96 3.32
2589 4356 4.887071 TCCAGCACAATACAGAAGTTGTTT 59.113 37.500 0.00 0.00 41.29 2.83
2625 4394 5.595542 TCTGGGATTTATTTCTGGATTGCTG 59.404 40.000 0.00 0.00 0.00 4.41
2629 4398 6.351286 GGGATTTATTTCTGGATTGCTGTTGT 60.351 38.462 0.00 0.00 0.00 3.32
2635 4404 3.877559 TCTGGATTGCTGTTGTGATAGG 58.122 45.455 0.00 0.00 0.00 2.57
2642 4411 4.882842 TGCTGTTGTGATAGGTCTGTAA 57.117 40.909 0.00 0.00 0.00 2.41
2643 4412 4.566004 TGCTGTTGTGATAGGTCTGTAAC 58.434 43.478 0.00 0.00 0.00 2.50
2646 4415 4.890088 TGTTGTGATAGGTCTGTAACACC 58.110 43.478 0.00 0.00 0.00 4.16
2647 4416 3.861276 TGTGATAGGTCTGTAACACCG 57.139 47.619 0.00 0.00 39.13 4.94
2659 4430 2.614983 TGTAACACCGAGTTTTTCTGCC 59.385 45.455 0.00 0.00 41.64 4.85
2661 4432 0.463116 ACACCGAGTTTTTCTGCCGT 60.463 50.000 0.00 0.00 0.00 5.68
2697 4469 0.542702 ATCCCCACCTGTGCCTTTTG 60.543 55.000 0.00 0.00 0.00 2.44
2707 4479 3.005684 CCTGTGCCTTTTGTGCTTAATCA 59.994 43.478 0.00 0.00 0.00 2.57
2709 4481 3.636300 TGTGCCTTTTGTGCTTAATCACT 59.364 39.130 10.55 0.00 37.81 3.41
2717 4489 9.643693 CCTTTTGTGCTTAATCACTTGAATTAT 57.356 29.630 10.55 0.00 37.81 1.28
2731 4503 3.035363 TGAATTATAGTCTGGGACGGCA 58.965 45.455 0.00 0.00 37.67 5.69
2733 4505 4.836175 TGAATTATAGTCTGGGACGGCATA 59.164 41.667 0.00 0.00 37.67 3.14
2749 4521 2.286418 GGCATAGCATTACTGTTGCGTC 60.286 50.000 0.00 0.00 44.82 5.19
2759 4531 3.670377 GTTGCGTCTTGGTGGGGC 61.670 66.667 0.00 0.00 0.00 5.80
2763 4535 4.619227 CGTCTTGGTGGGGCGTGT 62.619 66.667 0.00 0.00 0.00 4.49
2764 4536 2.745037 GTCTTGGTGGGGCGTGTA 59.255 61.111 0.00 0.00 0.00 2.90
2765 4537 1.375523 GTCTTGGTGGGGCGTGTAG 60.376 63.158 0.00 0.00 0.00 2.74
2766 4538 1.534476 TCTTGGTGGGGCGTGTAGA 60.534 57.895 0.00 0.00 0.00 2.59
2767 4539 0.907704 TCTTGGTGGGGCGTGTAGAT 60.908 55.000 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.559148 GAGGTATGTCTCCAATGGATCTT 57.441 43.478 0.87 0.74 0.00 2.40
11 12 1.202698 GGGCATGTGGAGGTATGTCTC 60.203 57.143 0.00 0.00 0.00 3.36
12 13 0.839946 GGGCATGTGGAGGTATGTCT 59.160 55.000 0.00 0.00 0.00 3.41
13 14 0.546122 TGGGCATGTGGAGGTATGTC 59.454 55.000 0.00 0.00 0.00 3.06
14 15 1.143684 GATGGGCATGTGGAGGTATGT 59.856 52.381 0.00 0.00 0.00 2.29
15 16 1.143481 TGATGGGCATGTGGAGGTATG 59.857 52.381 0.00 0.00 0.00 2.39
16 17 1.521764 TGATGGGCATGTGGAGGTAT 58.478 50.000 0.00 0.00 0.00 2.73
17 18 1.294041 TTGATGGGCATGTGGAGGTA 58.706 50.000 0.00 0.00 0.00 3.08
18 19 0.632835 ATTGATGGGCATGTGGAGGT 59.367 50.000 0.00 0.00 0.00 3.85
19 20 1.037493 CATTGATGGGCATGTGGAGG 58.963 55.000 0.00 0.00 0.00 4.30
20 21 2.061509 TCATTGATGGGCATGTGGAG 57.938 50.000 0.00 0.00 0.00 3.86
21 22 2.312390 CATCATTGATGGGCATGTGGA 58.688 47.619 17.31 0.00 36.51 4.02
22 23 1.270094 GCATCATTGATGGGCATGTGG 60.270 52.381 24.29 0.46 40.10 4.17
23 24 1.270094 GGCATCATTGATGGGCATGTG 60.270 52.381 24.29 2.49 40.10 3.21
24 25 1.045407 GGCATCATTGATGGGCATGT 58.955 50.000 24.29 0.00 40.10 3.21
25 26 1.000843 CTGGCATCATTGATGGGCATG 59.999 52.381 24.29 13.96 40.10 4.06
26 27 1.338107 CTGGCATCATTGATGGGCAT 58.662 50.000 24.29 0.00 40.10 4.40
27 28 0.032912 ACTGGCATCATTGATGGGCA 60.033 50.000 24.29 20.53 40.10 5.36
28 29 1.884579 CTACTGGCATCATTGATGGGC 59.115 52.381 24.29 17.80 40.10 5.36
29 30 2.107031 TCCTACTGGCATCATTGATGGG 59.893 50.000 24.29 16.60 40.10 4.00
30 31 3.144506 GTCCTACTGGCATCATTGATGG 58.855 50.000 24.29 12.70 40.10 3.51
31 32 2.804527 CGTCCTACTGGCATCATTGATG 59.195 50.000 20.14 20.14 42.37 3.07
32 33 2.224378 CCGTCCTACTGGCATCATTGAT 60.224 50.000 0.00 0.00 0.00 2.57
33 34 1.138859 CCGTCCTACTGGCATCATTGA 59.861 52.381 0.00 0.00 0.00 2.57
34 35 1.586422 CCGTCCTACTGGCATCATTG 58.414 55.000 0.00 0.00 0.00 2.82
35 36 0.469917 CCCGTCCTACTGGCATCATT 59.530 55.000 0.00 0.00 0.00 2.57
36 37 1.410850 CCCCGTCCTACTGGCATCAT 61.411 60.000 0.00 0.00 0.00 2.45
37 38 2.063979 CCCCGTCCTACTGGCATCA 61.064 63.158 0.00 0.00 0.00 3.07
38 39 2.808206 CCCCCGTCCTACTGGCATC 61.808 68.421 0.00 0.00 0.00 3.91
39 40 2.768344 CCCCCGTCCTACTGGCAT 60.768 66.667 0.00 0.00 0.00 4.40
53 54 3.661648 TTCTTCCTGCCTGCCCCC 61.662 66.667 0.00 0.00 0.00 5.40
54 55 2.361737 GTTCTTCCTGCCTGCCCC 60.362 66.667 0.00 0.00 0.00 5.80
55 56 2.361737 GGTTCTTCCTGCCTGCCC 60.362 66.667 0.00 0.00 0.00 5.36
56 57 2.759795 AGGTTCTTCCTGCCTGCC 59.240 61.111 0.00 0.00 46.19 4.85
64 65 5.825151 CCTGAAGATGGAATAAGGTTCTTCC 59.175 44.000 8.12 0.91 40.88 3.46
65 66 5.825151 CCCTGAAGATGGAATAAGGTTCTTC 59.175 44.000 0.00 0.00 41.58 2.87
66 67 5.492524 TCCCTGAAGATGGAATAAGGTTCTT 59.507 40.000 0.00 0.00 0.00 2.52
67 68 5.039645 TCCCTGAAGATGGAATAAGGTTCT 58.960 41.667 0.00 0.00 0.00 3.01
68 69 5.373812 TCCCTGAAGATGGAATAAGGTTC 57.626 43.478 0.00 0.00 0.00 3.62
69 70 5.254032 AGTTCCCTGAAGATGGAATAAGGTT 59.746 40.000 0.00 0.00 42.32 3.50
70 71 4.790790 AGTTCCCTGAAGATGGAATAAGGT 59.209 41.667 0.00 0.00 42.32 3.50
71 72 5.128919 CAGTTCCCTGAAGATGGAATAAGG 58.871 45.833 0.00 0.00 42.32 2.69
72 73 4.578105 GCAGTTCCCTGAAGATGGAATAAG 59.422 45.833 0.00 0.00 42.32 1.73
73 74 4.526970 GCAGTTCCCTGAAGATGGAATAA 58.473 43.478 0.00 0.00 42.32 1.40
74 75 3.117888 GGCAGTTCCCTGAAGATGGAATA 60.118 47.826 0.00 0.00 42.32 1.75
75 76 2.357569 GGCAGTTCCCTGAAGATGGAAT 60.358 50.000 0.00 0.00 42.32 3.01
76 77 1.004745 GGCAGTTCCCTGAAGATGGAA 59.995 52.381 0.00 0.00 41.50 3.53
77 78 0.620556 GGCAGTTCCCTGAAGATGGA 59.379 55.000 0.00 0.00 41.50 3.41
78 79 0.745845 CGGCAGTTCCCTGAAGATGG 60.746 60.000 0.00 0.00 41.50 3.51
79 80 1.372087 GCGGCAGTTCCCTGAAGATG 61.372 60.000 0.00 0.00 41.50 2.90
80 81 1.078143 GCGGCAGTTCCCTGAAGAT 60.078 57.895 0.00 0.00 41.50 2.40
81 82 2.347490 GCGGCAGTTCCCTGAAGA 59.653 61.111 0.00 0.00 41.50 2.87
82 83 2.747855 GGCGGCAGTTCCCTGAAG 60.748 66.667 3.07 0.00 41.50 3.02
83 84 4.697756 CGGCGGCAGTTCCCTGAA 62.698 66.667 10.53 0.00 41.50 3.02
89 90 4.719369 ACGAGACGGCGGCAGTTC 62.719 66.667 18.30 2.12 35.12 3.01
90 91 4.719369 GACGAGACGGCGGCAGTT 62.719 66.667 18.30 0.00 39.62 3.16
92 93 3.047718 TAAGACGAGACGGCGGCAG 62.048 63.158 18.30 11.70 43.13 4.85
93 94 3.057548 TAAGACGAGACGGCGGCA 61.058 61.111 18.30 0.00 43.13 5.69
94 95 2.578981 GTAAGACGAGACGGCGGC 60.579 66.667 13.24 8.92 41.28 6.53
95 96 1.226323 CTGTAAGACGAGACGGCGG 60.226 63.158 13.24 0.00 41.28 6.13
96 97 1.226323 CCTGTAAGACGAGACGGCG 60.226 63.158 4.80 4.80 41.28 6.46
97 98 0.179169 GTCCTGTAAGACGAGACGGC 60.179 60.000 0.00 0.00 34.07 5.68
98 99 1.135746 GTGTCCTGTAAGACGAGACGG 60.136 57.143 0.00 0.00 39.77 4.79
99 100 1.534163 TGTGTCCTGTAAGACGAGACG 59.466 52.381 0.00 0.00 39.77 4.18
100 101 3.637998 TTGTGTCCTGTAAGACGAGAC 57.362 47.619 0.00 0.00 39.77 3.36
101 102 3.243636 GGTTTGTGTCCTGTAAGACGAGA 60.244 47.826 0.00 0.00 39.77 4.04
102 103 3.057734 GGTTTGTGTCCTGTAAGACGAG 58.942 50.000 0.00 0.00 39.77 4.18
103 104 2.224113 GGGTTTGTGTCCTGTAAGACGA 60.224 50.000 0.00 0.00 39.77 4.20
104 105 2.140717 GGGTTTGTGTCCTGTAAGACG 58.859 52.381 0.00 0.00 39.77 4.18
105 106 3.487120 AGGGTTTGTGTCCTGTAAGAC 57.513 47.619 0.00 0.00 34.07 3.01
106 107 4.409574 TGTTAGGGTTTGTGTCCTGTAAGA 59.590 41.667 0.00 0.00 34.07 2.10
107 108 4.710324 TGTTAGGGTTTGTGTCCTGTAAG 58.290 43.478 0.00 0.00 34.75 2.34
108 109 4.774660 TGTTAGGGTTTGTGTCCTGTAA 57.225 40.909 0.00 0.00 34.75 2.41
109 110 4.986054 ATGTTAGGGTTTGTGTCCTGTA 57.014 40.909 0.00 0.00 34.75 2.74
110 111 3.876309 ATGTTAGGGTTTGTGTCCTGT 57.124 42.857 0.00 0.00 34.75 4.00
111 112 5.313712 AGTTATGTTAGGGTTTGTGTCCTG 58.686 41.667 0.00 0.00 34.75 3.86
112 113 5.309806 AGAGTTATGTTAGGGTTTGTGTCCT 59.690 40.000 0.00 0.00 37.18 3.85
113 114 5.411669 CAGAGTTATGTTAGGGTTTGTGTCC 59.588 44.000 0.00 0.00 0.00 4.02
114 115 6.228258 TCAGAGTTATGTTAGGGTTTGTGTC 58.772 40.000 0.00 0.00 0.00 3.67
115 116 6.182507 TCAGAGTTATGTTAGGGTTTGTGT 57.817 37.500 0.00 0.00 0.00 3.72
116 117 6.934645 TCTTCAGAGTTATGTTAGGGTTTGTG 59.065 38.462 0.00 0.00 0.00 3.33
117 118 7.074653 TCTTCAGAGTTATGTTAGGGTTTGT 57.925 36.000 0.00 0.00 0.00 2.83
118 119 7.979444 TTCTTCAGAGTTATGTTAGGGTTTG 57.021 36.000 0.00 0.00 0.00 2.93
119 120 7.447545 GGTTTCTTCAGAGTTATGTTAGGGTTT 59.552 37.037 0.00 0.00 0.00 3.27
120 121 6.940867 GGTTTCTTCAGAGTTATGTTAGGGTT 59.059 38.462 0.00 0.00 0.00 4.11
121 122 6.272558 AGGTTTCTTCAGAGTTATGTTAGGGT 59.727 38.462 0.00 0.00 0.00 4.34
122 123 6.712276 AGGTTTCTTCAGAGTTATGTTAGGG 58.288 40.000 0.00 0.00 0.00 3.53
130 131 9.595823 CCGATTTTATAGGTTTCTTCAGAGTTA 57.404 33.333 0.00 0.00 0.00 2.24
131 132 8.319146 TCCGATTTTATAGGTTTCTTCAGAGTT 58.681 33.333 0.00 0.00 0.00 3.01
132 133 7.848128 TCCGATTTTATAGGTTTCTTCAGAGT 58.152 34.615 0.00 0.00 0.00 3.24
133 134 7.042389 GCTCCGATTTTATAGGTTTCTTCAGAG 60.042 40.741 0.00 0.00 0.00 3.35
134 135 6.761714 GCTCCGATTTTATAGGTTTCTTCAGA 59.238 38.462 0.00 0.00 0.00 3.27
135 136 6.017852 GGCTCCGATTTTATAGGTTTCTTCAG 60.018 42.308 0.00 0.00 0.00 3.02
136 137 5.820947 GGCTCCGATTTTATAGGTTTCTTCA 59.179 40.000 0.00 0.00 0.00 3.02
137 138 5.820947 TGGCTCCGATTTTATAGGTTTCTTC 59.179 40.000 0.00 0.00 0.00 2.87
138 139 5.751586 TGGCTCCGATTTTATAGGTTTCTT 58.248 37.500 0.00 0.00 0.00 2.52
139 140 5.367945 TGGCTCCGATTTTATAGGTTTCT 57.632 39.130 0.00 0.00 0.00 2.52
140 141 5.181433 GGATGGCTCCGATTTTATAGGTTTC 59.819 44.000 0.00 0.00 0.00 2.78
141 142 5.070685 GGATGGCTCCGATTTTATAGGTTT 58.929 41.667 0.00 0.00 0.00 3.27
142 143 4.506802 GGGATGGCTCCGATTTTATAGGTT 60.507 45.833 0.00 0.00 43.11 3.50
143 144 3.009143 GGGATGGCTCCGATTTTATAGGT 59.991 47.826 0.00 0.00 43.11 3.08
144 145 3.610911 GGGATGGCTCCGATTTTATAGG 58.389 50.000 0.00 0.00 43.11 2.57
167 168 4.547367 GATCCCGACCCTTGCCGG 62.547 72.222 0.00 0.00 44.94 6.13
168 169 3.470888 AGATCCCGACCCTTGCCG 61.471 66.667 0.00 0.00 0.00 5.69
169 170 2.190578 CAGATCCCGACCCTTGCC 59.809 66.667 0.00 0.00 0.00 4.52
170 171 1.153349 GACAGATCCCGACCCTTGC 60.153 63.158 0.00 0.00 0.00 4.01
171 172 1.141881 CGACAGATCCCGACCCTTG 59.858 63.158 0.00 0.00 0.00 3.61
172 173 2.722201 GCGACAGATCCCGACCCTT 61.722 63.158 4.26 0.00 0.00 3.95
173 174 3.148279 GCGACAGATCCCGACCCT 61.148 66.667 4.26 0.00 0.00 4.34
174 175 4.570663 CGCGACAGATCCCGACCC 62.571 72.222 0.00 0.00 0.00 4.46
181 182 4.241555 ATGGGGGCGCGACAGATC 62.242 66.667 17.00 0.00 0.00 2.75
182 183 4.552365 CATGGGGGCGCGACAGAT 62.552 66.667 17.00 0.00 0.00 2.90
189 190 3.774599 CTTAGGGTCATGGGGGCGC 62.775 68.421 0.00 0.00 0.00 6.53
190 191 2.510906 CTTAGGGTCATGGGGGCG 59.489 66.667 0.00 0.00 0.00 6.13
191 192 2.927056 CCTTAGGGTCATGGGGGC 59.073 66.667 0.00 0.00 0.00 5.80
192 193 2.768022 GGCCTTAGGGTCATGGGGG 61.768 68.421 0.00 0.00 37.14 5.40
193 194 2.006415 TGGCCTTAGGGTCATGGGG 61.006 63.158 3.32 0.00 43.05 4.96
194 195 3.754043 TGGCCTTAGGGTCATGGG 58.246 61.111 3.32 0.00 43.05 4.00
198 199 3.006728 CCGGTGGCCTTAGGGTCA 61.007 66.667 3.32 0.00 46.10 4.02
199 200 2.686106 TCCGGTGGCCTTAGGGTC 60.686 66.667 3.32 0.00 37.81 4.46
200 201 2.687566 CTCCGGTGGCCTTAGGGT 60.688 66.667 3.32 0.00 34.45 4.34
201 202 2.365105 TCTCCGGTGGCCTTAGGG 60.365 66.667 3.32 0.00 0.00 3.53
202 203 1.550130 TTGTCTCCGGTGGCCTTAGG 61.550 60.000 3.32 4.25 0.00 2.69
203 204 0.108138 CTTGTCTCCGGTGGCCTTAG 60.108 60.000 3.32 0.00 0.00 2.18
204 205 1.550130 CCTTGTCTCCGGTGGCCTTA 61.550 60.000 3.32 0.00 0.00 2.69
205 206 2.750350 CTTGTCTCCGGTGGCCTT 59.250 61.111 3.32 0.00 0.00 4.35
206 207 3.322466 CCTTGTCTCCGGTGGCCT 61.322 66.667 3.32 0.00 0.00 5.19
207 208 3.637273 ACCTTGTCTCCGGTGGCC 61.637 66.667 5.53 0.00 30.90 5.36
208 209 2.358737 CACCTTGTCTCCGGTGGC 60.359 66.667 0.00 0.00 45.39 5.01
211 212 2.214920 GGTCCACCTTGTCTCCGGT 61.215 63.158 0.00 0.00 0.00 5.28
212 213 2.663196 GGTCCACCTTGTCTCCGG 59.337 66.667 0.00 0.00 0.00 5.14
213 214 2.261671 CGGTCCACCTTGTCTCCG 59.738 66.667 0.00 0.00 0.00 4.63
214 215 2.663196 CCGGTCCACCTTGTCTCC 59.337 66.667 0.00 0.00 0.00 3.71
215 216 2.047179 GCCGGTCCACCTTGTCTC 60.047 66.667 1.90 0.00 0.00 3.36
216 217 4.003788 CGCCGGTCCACCTTGTCT 62.004 66.667 1.90 0.00 0.00 3.41
235 236 3.678717 CTATATCCCGCCGACGCCG 62.679 68.421 0.00 0.00 38.22 6.46
236 237 2.181021 CTATATCCCGCCGACGCC 59.819 66.667 0.00 0.00 38.22 5.68
237 238 1.136984 CTCTATATCCCGCCGACGC 59.863 63.158 0.00 0.00 38.22 5.19
238 239 0.675837 TCCTCTATATCCCGCCGACG 60.676 60.000 0.00 0.00 39.67 5.12
239 240 1.096416 CTCCTCTATATCCCGCCGAC 58.904 60.000 0.00 0.00 0.00 4.79
240 241 0.680280 GCTCCTCTATATCCCGCCGA 60.680 60.000 0.00 0.00 0.00 5.54
241 242 1.668101 GGCTCCTCTATATCCCGCCG 61.668 65.000 0.00 0.00 0.00 6.46
242 243 1.331399 GGGCTCCTCTATATCCCGCC 61.331 65.000 0.00 0.00 35.41 6.13
243 244 0.324830 AGGGCTCCTCTATATCCCGC 60.325 60.000 0.00 0.00 41.76 6.13
244 245 2.242708 ACTAGGGCTCCTCTATATCCCG 59.757 54.545 0.00 0.00 41.76 5.14
245 246 3.530149 AGACTAGGGCTCCTCTATATCCC 59.470 52.174 0.00 0.00 34.61 3.85
246 247 4.477213 AGAGACTAGGGCTCCTCTATATCC 59.523 50.000 10.27 0.00 34.54 2.59
247 248 5.710409 AGAGACTAGGGCTCCTCTATATC 57.290 47.826 10.27 0.00 34.54 1.63
248 249 6.477901 AAAGAGACTAGGGCTCCTCTATAT 57.522 41.667 10.27 0.00 35.16 0.86
249 250 5.933846 AAAGAGACTAGGGCTCCTCTATA 57.066 43.478 10.27 0.00 35.16 1.31
250 251 4.825199 AAAGAGACTAGGGCTCCTCTAT 57.175 45.455 10.27 0.00 35.16 1.98
251 252 4.611564 AAAAGAGACTAGGGCTCCTCTA 57.388 45.455 10.27 0.00 35.16 2.43
252 253 3.483255 AAAAGAGACTAGGGCTCCTCT 57.517 47.619 10.27 0.00 37.58 3.69
271 272 1.603455 CGCTGCCTCCTCCCAAAAA 60.603 57.895 0.00 0.00 0.00 1.94
272 273 2.034066 CGCTGCCTCCTCCCAAAA 59.966 61.111 0.00 0.00 0.00 2.44
273 274 4.033776 CCGCTGCCTCCTCCCAAA 62.034 66.667 0.00 0.00 0.00 3.28
285 286 4.374702 GACAACGCACAGCCGCTG 62.375 66.667 19.08 19.08 37.52 5.18
286 287 4.908687 TGACAACGCACAGCCGCT 62.909 61.111 0.00 0.00 0.00 5.52
287 288 3.254014 ATTGACAACGCACAGCCGC 62.254 57.895 0.00 0.00 0.00 6.53
288 289 1.154413 GATTGACAACGCACAGCCG 60.154 57.895 0.00 0.00 0.00 5.52
289 290 1.154413 CGATTGACAACGCACAGCC 60.154 57.895 0.00 0.00 0.00 4.85
290 291 0.041312 AACGATTGACAACGCACAGC 60.041 50.000 9.20 0.00 0.00 4.40
291 292 1.003972 ACAACGATTGACAACGCACAG 60.004 47.619 9.20 2.26 0.00 3.66
292 293 1.010580 ACAACGATTGACAACGCACA 58.989 45.000 9.20 0.00 0.00 4.57
293 294 1.772966 CAACAACGATTGACAACGCAC 59.227 47.619 9.20 0.00 0.00 5.34
294 295 1.858000 GCAACAACGATTGACAACGCA 60.858 47.619 9.20 0.00 0.00 5.24
295 296 0.770008 GCAACAACGATTGACAACGC 59.230 50.000 9.20 0.00 0.00 4.84
296 297 2.098215 TGCAACAACGATTGACAACG 57.902 45.000 0.00 8.11 0.00 4.10
297 298 3.434637 AGTTGCAACAACGATTGACAAC 58.565 40.909 30.11 18.67 41.60 3.32
298 299 3.773860 AGTTGCAACAACGATTGACAA 57.226 38.095 30.11 0.00 0.00 3.18
299 300 3.119673 ACAAGTTGCAACAACGATTGACA 60.120 39.130 30.11 0.00 0.00 3.58
300 301 3.240401 CACAAGTTGCAACAACGATTGAC 59.760 43.478 30.11 0.63 0.00 3.18
301 302 3.433709 CACAAGTTGCAACAACGATTGA 58.566 40.909 30.11 0.00 0.00 2.57
302 303 2.535166 CCACAAGTTGCAACAACGATTG 59.465 45.455 30.11 24.76 0.00 2.67
303 304 2.481104 CCCACAAGTTGCAACAACGATT 60.481 45.455 30.11 13.31 0.00 3.34
304 305 1.066908 CCCACAAGTTGCAACAACGAT 59.933 47.619 30.11 7.43 0.00 3.73
305 306 0.453793 CCCACAAGTTGCAACAACGA 59.546 50.000 30.11 0.00 0.00 3.85
306 307 0.453793 TCCCACAAGTTGCAACAACG 59.546 50.000 30.11 19.45 0.00 4.10
307 308 2.663826 TTCCCACAAGTTGCAACAAC 57.336 45.000 30.11 5.54 0.00 3.32
308 309 2.564947 ACTTTCCCACAAGTTGCAACAA 59.435 40.909 30.11 11.86 32.81 2.83
309 310 2.094286 CACTTTCCCACAAGTTGCAACA 60.094 45.455 30.11 5.87 34.60 3.33
310 311 2.165437 TCACTTTCCCACAAGTTGCAAC 59.835 45.455 22.17 22.17 34.60 4.17
311 312 2.426738 CTCACTTTCCCACAAGTTGCAA 59.573 45.455 1.81 0.00 34.60 4.08
312 313 2.023673 CTCACTTTCCCACAAGTTGCA 58.976 47.619 1.81 0.00 34.60 4.08
313 314 2.297701 TCTCACTTTCCCACAAGTTGC 58.702 47.619 1.81 0.00 34.60 4.17
314 315 4.199310 TCTTCTCACTTTCCCACAAGTTG 58.801 43.478 0.00 0.00 34.60 3.16
315 316 4.503714 TCTTCTCACTTTCCCACAAGTT 57.496 40.909 0.00 0.00 34.60 2.66
316 317 4.503714 TTCTTCTCACTTTCCCACAAGT 57.496 40.909 0.00 0.00 37.49 3.16
317 318 5.008118 GTCTTTCTTCTCACTTTCCCACAAG 59.992 44.000 0.00 0.00 0.00 3.16
318 319 4.881850 GTCTTTCTTCTCACTTTCCCACAA 59.118 41.667 0.00 0.00 0.00 3.33
319 320 4.164221 AGTCTTTCTTCTCACTTTCCCACA 59.836 41.667 0.00 0.00 0.00 4.17
320 321 4.709250 AGTCTTTCTTCTCACTTTCCCAC 58.291 43.478 0.00 0.00 0.00 4.61
321 322 6.688073 ATAGTCTTTCTTCTCACTTTCCCA 57.312 37.500 0.00 0.00 0.00 4.37
322 323 6.752815 CGTATAGTCTTTCTTCTCACTTTCCC 59.247 42.308 0.00 0.00 0.00 3.97
323 324 7.536855 TCGTATAGTCTTTCTTCTCACTTTCC 58.463 38.462 0.00 0.00 0.00 3.13
324 325 9.015577 CATCGTATAGTCTTTCTTCTCACTTTC 57.984 37.037 0.00 0.00 0.00 2.62
325 326 7.489757 GCATCGTATAGTCTTTCTTCTCACTTT 59.510 37.037 0.00 0.00 0.00 2.66
326 327 6.975772 GCATCGTATAGTCTTTCTTCTCACTT 59.024 38.462 0.00 0.00 0.00 3.16
327 328 6.500041 GCATCGTATAGTCTTTCTTCTCACT 58.500 40.000 0.00 0.00 0.00 3.41
328 329 5.396947 CGCATCGTATAGTCTTTCTTCTCAC 59.603 44.000 0.00 0.00 0.00 3.51
329 330 5.511571 CGCATCGTATAGTCTTTCTTCTCA 58.488 41.667 0.00 0.00 0.00 3.27
330 331 4.380382 GCGCATCGTATAGTCTTTCTTCTC 59.620 45.833 0.30 0.00 0.00 2.87
331 332 4.202020 TGCGCATCGTATAGTCTTTCTTCT 60.202 41.667 5.66 0.00 0.00 2.85
332 333 4.042398 TGCGCATCGTATAGTCTTTCTTC 58.958 43.478 5.66 0.00 0.00 2.87
333 334 4.041740 TGCGCATCGTATAGTCTTTCTT 57.958 40.909 5.66 0.00 0.00 2.52
334 335 3.710326 TGCGCATCGTATAGTCTTTCT 57.290 42.857 5.66 0.00 0.00 2.52
335 336 3.981416 TGATGCGCATCGTATAGTCTTTC 59.019 43.478 37.23 17.22 40.63 2.62
336 337 3.977427 TGATGCGCATCGTATAGTCTTT 58.023 40.909 37.23 8.49 40.63 2.52
337 338 3.643159 TGATGCGCATCGTATAGTCTT 57.357 42.857 37.23 8.71 40.63 3.01
338 339 3.191371 TCATGATGCGCATCGTATAGTCT 59.809 43.478 37.28 15.98 40.63 3.24
339 340 3.501950 TCATGATGCGCATCGTATAGTC 58.498 45.455 37.28 19.01 40.63 2.59
340 341 3.575965 TCATGATGCGCATCGTATAGT 57.424 42.857 37.28 19.71 40.63 2.12
341 342 4.563976 TGATTCATGATGCGCATCGTATAG 59.436 41.667 37.28 27.07 40.63 1.31
342 343 4.493547 TGATTCATGATGCGCATCGTATA 58.506 39.130 37.28 28.51 40.63 1.47
343 344 3.328505 TGATTCATGATGCGCATCGTAT 58.671 40.909 37.28 29.36 40.63 3.06
344 345 2.733026 CTGATTCATGATGCGCATCGTA 59.267 45.455 37.28 26.47 40.63 3.43
345 346 1.529865 CTGATTCATGATGCGCATCGT 59.470 47.619 37.23 35.65 40.63 3.73
346 347 1.796459 TCTGATTCATGATGCGCATCG 59.204 47.619 37.23 26.95 40.63 3.84
347 348 3.426292 CCATCTGATTCATGATGCGCATC 60.426 47.826 37.43 37.43 38.84 3.91
348 349 2.488153 CCATCTGATTCATGATGCGCAT 59.512 45.455 25.66 25.66 38.84 4.73
349 350 1.877443 CCATCTGATTCATGATGCGCA 59.123 47.619 14.96 14.96 38.84 6.09
350 351 1.401148 GCCATCTGATTCATGATGCGC 60.401 52.381 0.00 0.00 38.84 6.09
351 352 2.152016 AGCCATCTGATTCATGATGCG 58.848 47.619 15.16 11.54 38.84 4.73
352 353 2.159824 CGAGCCATCTGATTCATGATGC 59.840 50.000 15.16 12.16 38.84 3.91
353 354 3.186613 CACGAGCCATCTGATTCATGATG 59.813 47.826 14.27 14.27 39.60 3.07
354 355 3.400255 CACGAGCCATCTGATTCATGAT 58.600 45.455 0.00 0.00 0.00 2.45
355 356 2.484241 CCACGAGCCATCTGATTCATGA 60.484 50.000 0.00 0.00 0.00 3.07
356 357 1.871676 CCACGAGCCATCTGATTCATG 59.128 52.381 0.00 0.00 0.00 3.07
357 358 1.202734 CCCACGAGCCATCTGATTCAT 60.203 52.381 0.00 0.00 0.00 2.57
358 359 0.178767 CCCACGAGCCATCTGATTCA 59.821 55.000 0.00 0.00 0.00 2.57
359 360 1.162800 GCCCACGAGCCATCTGATTC 61.163 60.000 0.00 0.00 0.00 2.52
360 361 1.153086 GCCCACGAGCCATCTGATT 60.153 57.895 0.00 0.00 0.00 2.57
361 362 2.507944 GCCCACGAGCCATCTGAT 59.492 61.111 0.00 0.00 0.00 2.90
378 379 1.468914 GTCTTTCTAAAAGCCAGCCGG 59.531 52.381 0.00 0.00 0.00 6.13
379 380 1.468914 GGTCTTTCTAAAAGCCAGCCG 59.531 52.381 7.55 0.00 0.00 5.52
380 381 2.796557 AGGTCTTTCTAAAAGCCAGCC 58.203 47.619 12.30 5.49 0.00 4.85
381 382 3.375610 GCTAGGTCTTTCTAAAAGCCAGC 59.624 47.826 12.30 13.17 0.00 4.85
382 383 4.393371 GTGCTAGGTCTTTCTAAAAGCCAG 59.607 45.833 12.30 9.53 0.00 4.85
383 384 4.324267 GTGCTAGGTCTTTCTAAAAGCCA 58.676 43.478 12.30 2.78 0.00 4.75
384 385 3.371285 CGTGCTAGGTCTTTCTAAAAGCC 59.629 47.826 0.00 0.91 0.00 4.35
385 386 3.181519 GCGTGCTAGGTCTTTCTAAAAGC 60.182 47.826 0.00 0.00 0.00 3.51
386 387 3.371285 GGCGTGCTAGGTCTTTCTAAAAG 59.629 47.826 0.00 0.00 0.00 2.27
387 388 3.332034 GGCGTGCTAGGTCTTTCTAAAA 58.668 45.455 0.00 0.00 0.00 1.52
388 389 2.354403 GGGCGTGCTAGGTCTTTCTAAA 60.354 50.000 0.00 0.00 0.00 1.85
389 390 1.206371 GGGCGTGCTAGGTCTTTCTAA 59.794 52.381 0.00 0.00 0.00 2.10
390 391 0.822164 GGGCGTGCTAGGTCTTTCTA 59.178 55.000 0.00 0.00 0.00 2.10
391 392 1.597461 GGGCGTGCTAGGTCTTTCT 59.403 57.895 0.00 0.00 0.00 2.52
392 393 1.449778 GGGGCGTGCTAGGTCTTTC 60.450 63.158 0.00 0.00 0.00 2.62
393 394 1.900545 GAGGGGCGTGCTAGGTCTTT 61.901 60.000 0.00 0.00 0.00 2.52
394 395 2.284699 AGGGGCGTGCTAGGTCTT 60.285 61.111 0.00 0.00 0.00 3.01
395 396 2.760385 GAGGGGCGTGCTAGGTCT 60.760 66.667 0.00 0.00 0.00 3.85
396 397 3.851128 GGAGGGGCGTGCTAGGTC 61.851 72.222 0.00 0.00 0.00 3.85
397 398 3.925914 AAGGAGGGGCGTGCTAGGT 62.926 63.158 0.00 0.00 0.00 3.08
398 399 2.198304 AAAAGGAGGGGCGTGCTAGG 62.198 60.000 0.00 0.00 0.00 3.02
399 400 0.322546 AAAAAGGAGGGGCGTGCTAG 60.323 55.000 0.00 0.00 0.00 3.42
400 401 0.608035 CAAAAAGGAGGGGCGTGCTA 60.608 55.000 0.00 0.00 0.00 3.49
401 402 1.903404 CAAAAAGGAGGGGCGTGCT 60.903 57.895 0.00 0.00 0.00 4.40
402 403 1.460273 TTCAAAAAGGAGGGGCGTGC 61.460 55.000 0.00 0.00 0.00 5.34
403 404 1.036707 TTTCAAAAAGGAGGGGCGTG 58.963 50.000 0.00 0.00 0.00 5.34
404 405 1.783071 TTTTCAAAAAGGAGGGGCGT 58.217 45.000 0.00 0.00 0.00 5.68
405 406 2.671070 CGATTTTCAAAAAGGAGGGGCG 60.671 50.000 0.00 0.00 0.00 6.13
406 407 2.930887 GCGATTTTCAAAAAGGAGGGGC 60.931 50.000 0.00 0.00 0.00 5.80
407 408 2.562738 AGCGATTTTCAAAAAGGAGGGG 59.437 45.455 0.00 0.00 0.00 4.79
408 409 3.942130 AGCGATTTTCAAAAAGGAGGG 57.058 42.857 0.00 0.00 0.00 4.30
409 410 5.125417 TCCATAGCGATTTTCAAAAAGGAGG 59.875 40.000 0.00 0.00 0.00 4.30
410 411 6.194796 TCCATAGCGATTTTCAAAAAGGAG 57.805 37.500 0.00 0.00 0.00 3.69
411 412 6.386654 GTTCCATAGCGATTTTCAAAAAGGA 58.613 36.000 0.00 0.00 0.00 3.36
412 413 5.576774 GGTTCCATAGCGATTTTCAAAAAGG 59.423 40.000 0.00 0.00 0.00 3.11
413 414 6.155827 TGGTTCCATAGCGATTTTCAAAAAG 58.844 36.000 0.00 0.00 0.00 2.27
414 415 6.090483 TGGTTCCATAGCGATTTTCAAAAA 57.910 33.333 0.00 0.00 0.00 1.94
415 416 5.713792 TGGTTCCATAGCGATTTTCAAAA 57.286 34.783 0.00 0.00 0.00 2.44
425 426 3.296322 TTTGCTTTTGGTTCCATAGCG 57.704 42.857 16.14 0.00 0.00 4.26
548 551 1.153369 CATGCACCCGGTCTACCAG 60.153 63.158 0.00 0.00 35.14 4.00
578 581 6.469410 TCTCTACGATTTGTGGGTTGTTAAT 58.531 36.000 0.00 0.00 0.00 1.40
762 776 4.308458 TGGCGGACGTGGTTGGAG 62.308 66.667 0.00 0.00 0.00 3.86
863 878 4.971125 GCGGGGCATACGAGGAGC 62.971 72.222 0.00 0.00 0.00 4.70
1596 2019 1.447838 GCCGCAGCTGTAGCAGTTA 60.448 57.895 20.84 0.00 45.16 2.24
1714 2387 4.394712 GCCGCAGTGGTAGCAGGT 62.395 66.667 0.89 0.00 41.21 4.00
1994 2683 5.124138 ACCTTAGACATCAACTGAGAGTACG 59.876 44.000 0.00 0.00 0.00 3.67
2012 2701 4.590850 TCCATCATCATCACGACCTTAG 57.409 45.455 0.00 0.00 0.00 2.18
2142 2833 8.037382 TGACAAGAGAGAATTCATTCATTCAC 57.963 34.615 8.44 0.00 39.23 3.18
2193 2892 6.097554 CAGGATGTCAGACAGAGGTAATAGTT 59.902 42.308 9.64 0.00 0.00 2.24
2242 2941 5.217978 TCGCCTTCCAAACTCTACTTTAA 57.782 39.130 0.00 0.00 0.00 1.52
2244 2943 3.764237 TCGCCTTCCAAACTCTACTTT 57.236 42.857 0.00 0.00 0.00 2.66
2250 2949 5.063564 CACTAGTTAATCGCCTTCCAAACTC 59.936 44.000 0.00 0.00 0.00 3.01
2262 2961 6.097356 TGAAAGTACCAGCACTAGTTAATCG 58.903 40.000 0.00 0.00 0.00 3.34
2330 3032 0.108138 CTTTCCCCTCCACTACGCAG 60.108 60.000 0.00 0.00 0.00 5.18
2331 3033 0.834687 ACTTTCCCCTCCACTACGCA 60.835 55.000 0.00 0.00 0.00 5.24
2370 3073 2.812836 TTCCCCGGATTAAAAGGGTC 57.187 50.000 0.73 0.00 43.58 4.46
2388 3091 2.711542 CTTACCCCAGATTGACGCTTT 58.288 47.619 0.00 0.00 0.00 3.51
2461 3165 3.138283 ACTGACAGGAAAGTGGATCCAAA 59.862 43.478 18.20 0.00 39.55 3.28
2502 3206 3.254166 CCAGACACAGTGCAAGCTTAAAT 59.746 43.478 0.00 0.00 0.00 1.40
2511 3215 1.070275 CAGAGCCAGACACAGTGCA 59.930 57.895 0.00 0.00 0.00 4.57
2554 3259 5.830799 ATTGTGCTGGAGATGTATATGGA 57.169 39.130 0.00 0.00 0.00 3.41
2578 3283 9.013490 CAGAACAAAGATGTAAAACAACTTCTG 57.987 33.333 3.47 3.64 39.78 3.02
2615 4384 3.614092 ACCTATCACAACAGCAATCCAG 58.386 45.455 0.00 0.00 0.00 3.86
2625 4394 3.924686 CGGTGTTACAGACCTATCACAAC 59.075 47.826 0.00 0.00 0.00 3.32
2629 4398 3.693807 ACTCGGTGTTACAGACCTATCA 58.306 45.455 0.00 0.00 0.00 2.15
2635 4404 4.552184 GCAGAAAAACTCGGTGTTACAGAC 60.552 45.833 0.00 0.00 38.03 3.51
2642 4411 0.463116 ACGGCAGAAAAACTCGGTGT 60.463 50.000 0.00 0.00 0.00 4.16
2643 4412 0.661020 AACGGCAGAAAAACTCGGTG 59.339 50.000 0.00 0.00 0.00 4.94
2646 4415 2.798283 TGTCTAACGGCAGAAAAACTCG 59.202 45.455 0.00 0.00 0.00 4.18
2647 4416 3.808174 AGTGTCTAACGGCAGAAAAACTC 59.192 43.478 0.00 0.00 0.00 3.01
2659 4430 5.163754 GGGGATTGAAATTCAGTGTCTAACG 60.164 44.000 0.00 0.00 0.00 3.18
2661 4432 5.710099 GTGGGGATTGAAATTCAGTGTCTAA 59.290 40.000 0.00 0.00 0.00 2.10
2707 4479 4.443034 GCCGTCCCAGACTATAATTCAAGT 60.443 45.833 0.00 0.00 0.00 3.16
2709 4481 3.452990 TGCCGTCCCAGACTATAATTCAA 59.547 43.478 0.00 0.00 0.00 2.69
2717 4489 0.396556 TGCTATGCCGTCCCAGACTA 60.397 55.000 0.00 0.00 0.00 2.59
2718 4490 1.050988 ATGCTATGCCGTCCCAGACT 61.051 55.000 0.00 0.00 0.00 3.24
2731 4503 3.623060 CCAAGACGCAACAGTAATGCTAT 59.377 43.478 0.00 0.00 41.64 2.97
2733 4505 1.806542 CCAAGACGCAACAGTAATGCT 59.193 47.619 0.00 0.00 41.64 3.79
2749 4521 1.602237 ATCTACACGCCCCACCAAG 59.398 57.895 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.