Multiple sequence alignment - TraesCS6D01G066700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G066700 chr6D 100.000 2516 0 0 1 2516 32695841 32693326 0.000000e+00 4647
1 TraesCS6D01G066700 chr6A 89.996 2579 158 50 1 2516 37409041 37406500 0.000000e+00 3241
2 TraesCS6D01G066700 chr6A 84.958 718 75 21 1009 1722 611536160 611536848 0.000000e+00 697
3 TraesCS6D01G066700 chr6A 83.799 716 90 16 1015 1720 611541077 611541776 0.000000e+00 656
4 TraesCS6D01G066700 chr6A 86.744 430 48 5 1051 1477 611544273 611544696 1.050000e-128 470
5 TraesCS6D01G066700 chr6B 92.414 1951 89 27 9 1934 68924324 68922408 0.000000e+00 2728
6 TraesCS6D01G066700 chr6B 83.705 718 84 20 1009 1721 709120388 709121077 0.000000e+00 647
7 TraesCS6D01G066700 chr6B 79.890 363 39 16 2011 2352 68922370 68922021 4.180000e-58 235
8 TraesCS6D01G066700 chr6B 86.207 116 13 1 1396 1511 709099539 709099651 3.400000e-24 122
9 TraesCS6D01G066700 chr4D 79.304 517 87 18 1007 1513 1203018 1202512 6.660000e-91 344
10 TraesCS6D01G066700 chr4B 79.264 516 89 16 1007 1513 808739 809245 6.660000e-91 344
11 TraesCS6D01G066700 chr4A 78.723 517 90 18 1007 1513 603637560 603638066 6.710000e-86 327


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G066700 chr6D 32693326 32695841 2515 True 4647.0 4647 100.0000 1 2516 1 chr6D.!!$R1 2515
1 TraesCS6D01G066700 chr6A 37406500 37409041 2541 True 3241.0 3241 89.9960 1 2516 1 chr6A.!!$R1 2515
2 TraesCS6D01G066700 chr6A 611536160 611536848 688 False 697.0 697 84.9580 1009 1722 1 chr6A.!!$F1 713
3 TraesCS6D01G066700 chr6A 611541077 611544696 3619 False 563.0 656 85.2715 1015 1720 2 chr6A.!!$F2 705
4 TraesCS6D01G066700 chr6B 68922021 68924324 2303 True 1481.5 2728 86.1520 9 2352 2 chr6B.!!$R1 2343
5 TraesCS6D01G066700 chr6B 709120388 709121077 689 False 647.0 647 83.7050 1009 1721 1 chr6B.!!$F2 712
6 TraesCS6D01G066700 chr4D 1202512 1203018 506 True 344.0 344 79.3040 1007 1513 1 chr4D.!!$R1 506
7 TraesCS6D01G066700 chr4B 808739 809245 506 False 344.0 344 79.2640 1007 1513 1 chr4B.!!$F1 506
8 TraesCS6D01G066700 chr4A 603637560 603638066 506 False 327.0 327 78.7230 1007 1513 1 chr4A.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 444 0.106167 CCGGTCCATAGACTCTCCCA 60.106 60.0 0.0 0.0 43.05 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 2028 0.247814 CGCGTGGTACCGTACTACAG 60.248 60.0 21.06 15.36 39.79 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.057819 CAGTCCATGATCTCAAGGATTCAG 58.942 45.833 7.36 0.00 44.35 3.02
141 157 1.757118 CAGTTCGATCAGGCCCTAGAA 59.243 52.381 0.00 0.00 0.00 2.10
146 162 1.274728 CGATCAGGCCCTAGAATGAGG 59.725 57.143 0.00 0.00 36.23 3.86
424 444 0.106167 CCGGTCCATAGACTCTCCCA 60.106 60.000 0.00 0.00 43.05 4.37
432 452 4.656112 TCCATAGACTCTCCCAAAAGATCC 59.344 45.833 0.00 0.00 0.00 3.36
490 510 1.379527 CAGTCCAAAAGCGGGGATAC 58.620 55.000 0.00 0.00 35.25 2.24
559 579 1.562672 CCAACCCTAGTCACCCCCAG 61.563 65.000 0.00 0.00 0.00 4.45
700 720 0.395586 GCAGGCCCCACATGTCATAA 60.396 55.000 0.00 0.00 0.00 1.90
888 908 0.179067 CCTCGCCGCCTATTTAACCA 60.179 55.000 0.00 0.00 0.00 3.67
938 969 1.296727 CCGAAGCGAAAGGTAATCCC 58.703 55.000 0.00 0.00 43.76 3.85
1116 1147 3.843240 GAGAACTTCCGCGCGCTG 61.843 66.667 30.48 23.89 0.00 5.18
1611 1657 2.963498 TAAGAGAGTCGTGTGTCGTG 57.037 50.000 0.00 0.00 40.80 4.35
1612 1658 1.022735 AAGAGAGTCGTGTGTCGTGT 58.977 50.000 0.00 0.00 40.80 4.49
1613 1659 0.587285 AGAGAGTCGTGTGTCGTGTC 59.413 55.000 0.00 0.00 40.80 3.67
1614 1660 0.721811 GAGAGTCGTGTGTCGTGTCG 60.722 60.000 0.00 0.00 40.80 4.35
1615 1661 1.010350 GAGTCGTGTGTCGTGTCGT 60.010 57.895 0.00 0.00 40.80 4.34
1696 1743 0.254178 TCTTTGGGCTGCTGGATCTC 59.746 55.000 0.00 0.00 0.00 2.75
1705 1752 2.818132 CTGGATCTCTGTCCGGCC 59.182 66.667 0.00 0.00 41.35 6.13
1779 1826 6.533730 TGAACTCCGCTATGAATTATCCATT 58.466 36.000 0.00 0.00 0.00 3.16
1788 1835 7.216881 CGCTATGAATTATCCATTATTTGTGCG 59.783 37.037 0.00 0.00 0.00 5.34
1790 1837 6.389830 TGAATTATCCATTATTTGTGCGCT 57.610 33.333 9.73 0.00 0.00 5.92
1792 1839 6.696583 TGAATTATCCATTATTTGTGCGCTTG 59.303 34.615 9.73 0.00 0.00 4.01
1794 1841 1.135141 TCCATTATTTGTGCGCTTGGC 60.135 47.619 9.73 0.00 43.96 4.52
1795 1842 1.135024 CCATTATTTGTGCGCTTGGCT 60.135 47.619 9.73 0.00 44.05 4.75
1797 1844 2.346099 TTATTTGTGCGCTTGGCTTC 57.654 45.000 9.73 0.00 44.05 3.86
1798 1845 1.242989 TATTTGTGCGCTTGGCTTCA 58.757 45.000 9.73 0.00 44.05 3.02
1817 1866 5.447683 GCTTCATATCTGTTTGTCGCATTCA 60.448 40.000 0.00 0.00 0.00 2.57
1843 1892 1.466979 TCTGGTGCTCCTGACTCCT 59.533 57.895 10.03 0.00 36.89 3.69
1853 1902 2.834549 CTCCTGACTCCTATGTGTTGGT 59.165 50.000 0.00 0.00 0.00 3.67
1871 1920 1.265905 GGTACCCGTGTGCTTTTTCTG 59.734 52.381 0.00 0.00 0.00 3.02
1891 1941 4.466370 TCTGGTGTTATCCACTCGATTTCT 59.534 41.667 0.00 0.00 43.94 2.52
1914 1964 5.492895 TGTGCCTATTACCGATCTGAAAAA 58.507 37.500 0.00 0.00 0.00 1.94
1916 1966 6.601613 TGTGCCTATTACCGATCTGAAAAATT 59.398 34.615 0.00 0.00 0.00 1.82
1917 1967 6.912591 GTGCCTATTACCGATCTGAAAAATTG 59.087 38.462 0.00 0.00 0.00 2.32
1947 1997 2.033236 TCACGTTTCAAATGCTCGACAC 60.033 45.455 0.00 0.00 0.00 3.67
1949 1999 2.353269 ACGTTTCAAATGCTCGACACAA 59.647 40.909 0.00 0.00 0.00 3.33
1950 2000 2.966708 CGTTTCAAATGCTCGACACAAG 59.033 45.455 0.00 0.00 0.00 3.16
1974 2024 6.148811 AGTTCTGAACTTTCTCGACACAAAAA 59.851 34.615 17.00 0.00 39.04 1.94
1978 2028 4.016113 ACTTTCTCGACACAAAAACTGC 57.984 40.909 0.00 0.00 0.00 4.40
1979 2029 3.689649 ACTTTCTCGACACAAAAACTGCT 59.310 39.130 0.00 0.00 0.00 4.24
1980 2030 3.673746 TTCTCGACACAAAAACTGCTG 57.326 42.857 0.00 0.00 0.00 4.41
1982 2032 3.787785 TCTCGACACAAAAACTGCTGTA 58.212 40.909 0.00 0.00 0.00 2.74
1983 2033 3.802139 TCTCGACACAAAAACTGCTGTAG 59.198 43.478 0.00 0.00 0.00 2.74
1984 2034 3.527533 TCGACACAAAAACTGCTGTAGT 58.472 40.909 0.00 0.00 42.89 2.73
1985 2035 4.684877 TCGACACAAAAACTGCTGTAGTA 58.315 39.130 0.00 0.00 39.18 1.82
1988 2038 3.558418 ACACAAAAACTGCTGTAGTACGG 59.442 43.478 4.63 4.63 39.18 4.02
1989 2039 3.558418 CACAAAAACTGCTGTAGTACGGT 59.442 43.478 10.80 0.00 39.18 4.83
1990 2040 4.746115 CACAAAAACTGCTGTAGTACGGTA 59.254 41.667 10.80 5.38 39.18 4.02
1991 2041 4.746611 ACAAAAACTGCTGTAGTACGGTAC 59.253 41.667 10.29 10.29 39.18 3.34
1992 2042 3.582714 AAACTGCTGTAGTACGGTACC 57.417 47.619 14.41 0.16 39.18 3.34
1993 2043 2.205022 ACTGCTGTAGTACGGTACCA 57.795 50.000 13.54 5.96 38.04 3.25
1994 2044 1.815003 ACTGCTGTAGTACGGTACCAC 59.185 52.381 13.54 11.84 38.04 4.16
1995 2045 0.804364 TGCTGTAGTACGGTACCACG 59.196 55.000 13.54 8.91 40.31 4.94
1996 2046 0.524180 GCTGTAGTACGGTACCACGC 60.524 60.000 13.54 14.02 37.37 5.34
1998 2048 1.583709 GTAGTACGGTACCACGCGC 60.584 63.158 13.54 0.00 37.37 6.86
2009 2059 0.525761 ACCACGCGCAAATTAGCATT 59.474 45.000 5.73 0.00 0.00 3.56
2066 2124 3.482156 ACATGGTCTGCTATCATGTCC 57.518 47.619 11.36 0.00 45.56 4.02
2067 2125 2.224137 ACATGGTCTGCTATCATGTCCG 60.224 50.000 11.36 0.00 45.56 4.79
2085 2147 0.734942 CGCCCGTACATTCACTTCGT 60.735 55.000 0.00 0.00 0.00 3.85
2088 2150 2.412325 GCCCGTACATTCACTTCGTTTG 60.412 50.000 0.00 0.00 0.00 2.93
2100 2162 4.452795 TCACTTCGTTTGTCAAAACTGACA 59.547 37.500 3.88 3.88 45.85 3.58
2103 2165 4.955925 TCGTTTGTCAAAACTGACATGT 57.044 36.364 8.66 0.00 46.61 3.21
2107 2169 5.344665 CGTTTGTCAAAACTGACATGTTTGT 59.655 36.000 8.66 0.00 46.61 2.83
2120 2182 6.068010 TGACATGTTTGTTTAATCCTGACCT 58.932 36.000 0.00 0.00 35.79 3.85
2121 2183 6.549364 TGACATGTTTGTTTAATCCTGACCTT 59.451 34.615 0.00 0.00 35.79 3.50
2123 2185 7.433680 ACATGTTTGTTTAATCCTGACCTTTC 58.566 34.615 0.00 0.00 29.55 2.62
2198 2287 9.927668 AATTTTGGAGAACAATATTACCTTGTG 57.072 29.630 0.00 0.00 38.44 3.33
2212 2301 1.954382 CCTTGTGGATGCATGGATCTG 59.046 52.381 24.25 10.97 36.21 2.90
2223 2316 4.707105 TGCATGGATCTGTATTGGTAGTG 58.293 43.478 0.00 0.00 0.00 2.74
2252 2345 2.733227 GCGTGGATCTGAGGCAAAATTG 60.733 50.000 0.00 0.00 0.00 2.32
2352 2445 1.152860 TTGGCGGCAGGAAGTTTCA 60.153 52.632 12.87 0.00 0.00 2.69
2354 2447 0.326595 TGGCGGCAGGAAGTTTCATA 59.673 50.000 7.97 0.00 0.00 2.15
2356 2449 2.171659 TGGCGGCAGGAAGTTTCATATA 59.828 45.455 7.97 0.00 0.00 0.86
2360 2453 4.083271 GCGGCAGGAAGTTTCATATATTCC 60.083 45.833 0.00 0.00 41.29 3.01
2361 2454 5.063204 CGGCAGGAAGTTTCATATATTCCA 58.937 41.667 5.68 0.00 43.04 3.53
2364 2457 6.716628 GGCAGGAAGTTTCATATATTCCATCA 59.283 38.462 5.68 0.00 43.04 3.07
2366 2459 8.457261 GCAGGAAGTTTCATATATTCCATCATC 58.543 37.037 5.68 0.00 43.04 2.92
2367 2460 9.511272 CAGGAAGTTTCATATATTCCATCATCA 57.489 33.333 5.68 0.00 43.04 3.07
2375 2468 8.899887 TCATATATTCCATCATCACTAGACCA 57.100 34.615 0.00 0.00 0.00 4.02
2379 2472 5.808366 TTCCATCATCACTAGACCATACC 57.192 43.478 0.00 0.00 0.00 2.73
2381 2474 5.215845 TCCATCATCACTAGACCATACCAA 58.784 41.667 0.00 0.00 0.00 3.67
2419 2527 8.635983 GGCAGATTCGTAAACAAGAAATAAAAC 58.364 33.333 0.00 0.00 0.00 2.43
2422 2530 6.642659 TTCGTAAACAAGAAATAAAACGCG 57.357 33.333 3.53 3.53 0.00 6.01
2441 2809 6.299023 ACGCGATGCATCATTTAGATTTAA 57.701 33.333 25.70 0.00 33.72 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 44 5.428496 AGAGTTGCGGTTTTTAGGTAAAC 57.572 39.130 0.00 0.00 37.30 2.01
119 133 1.757118 CTAGGGCCTGATCGAACTGAA 59.243 52.381 18.53 0.00 0.00 3.02
169 185 4.831307 ACGGTCGAGATGCGCGTC 62.831 66.667 22.11 22.11 34.45 5.19
424 444 3.799755 GCGCGCGTGGGATCTTTT 61.800 61.111 32.35 0.00 0.00 2.27
486 506 3.645212 GACTAGGGTTAGGTTGGGGTATC 59.355 52.174 0.00 0.00 0.00 2.24
490 510 1.210538 GGACTAGGGTTAGGTTGGGG 58.789 60.000 0.00 0.00 0.00 4.96
559 579 6.020678 CCGTGCGAATTTTTATTGGATCTTTC 60.021 38.462 0.00 0.00 0.00 2.62
606 626 1.377725 GTGGGCCCAGAGTGTCATG 60.378 63.158 29.55 0.00 0.00 3.07
700 720 2.040544 CCATTCCAACGCGAGGCTT 61.041 57.895 15.93 2.06 0.00 4.35
926 947 3.296854 GTGGGGATTGGGATTACCTTTC 58.703 50.000 0.00 0.00 41.11 2.62
938 969 1.006998 TGGGGATTTCTGTGGGGATTG 59.993 52.381 0.00 0.00 0.00 2.67
1611 1657 1.292541 GACCAGGGGAAGACACGAC 59.707 63.158 0.00 0.00 0.00 4.34
1612 1658 1.911766 GGACCAGGGGAAGACACGA 60.912 63.158 0.00 0.00 0.00 4.35
1613 1659 2.663196 GGACCAGGGGAAGACACG 59.337 66.667 0.00 0.00 0.00 4.49
1614 1660 2.168666 GACGGACCAGGGGAAGACAC 62.169 65.000 0.00 0.00 0.00 3.67
1615 1661 1.911766 GACGGACCAGGGGAAGACA 60.912 63.158 0.00 0.00 0.00 3.41
1705 1752 2.009774 CACAGGAAGATAACCAAGGCG 58.990 52.381 0.00 0.00 0.00 5.52
1779 1826 1.242989 TGAAGCCAAGCGCACAAATA 58.757 45.000 11.47 0.00 41.38 1.40
1788 1835 4.666237 GACAAACAGATATGAAGCCAAGC 58.334 43.478 0.00 0.00 0.00 4.01
1790 1837 3.126858 GCGACAAACAGATATGAAGCCAA 59.873 43.478 0.00 0.00 0.00 4.52
1792 1839 2.677836 TGCGACAAACAGATATGAAGCC 59.322 45.455 0.00 0.00 0.00 4.35
1794 1841 6.110543 TGAATGCGACAAACAGATATGAAG 57.889 37.500 0.00 0.00 0.00 3.02
1795 1842 6.682423 ATGAATGCGACAAACAGATATGAA 57.318 33.333 0.00 0.00 0.00 2.57
1797 1844 7.182361 AGTATGAATGCGACAAACAGATATG 57.818 36.000 0.00 0.00 0.00 1.78
1798 1845 7.792374 AAGTATGAATGCGACAAACAGATAT 57.208 32.000 0.00 0.00 0.00 1.63
1817 1866 2.906389 TCAGGAGCACCAGACAAAGTAT 59.094 45.455 2.07 0.00 38.94 2.12
1853 1902 1.134037 ACCAGAAAAAGCACACGGGTA 60.134 47.619 0.00 0.00 0.00 3.69
1891 1941 4.746535 TTTCAGATCGGTAATAGGCACA 57.253 40.909 0.00 0.00 0.00 4.57
1916 1966 9.123709 GAGCATTTGAAACGTGATTAATTTACA 57.876 29.630 0.00 0.00 0.00 2.41
1917 1967 8.304138 CGAGCATTTGAAACGTGATTAATTTAC 58.696 33.333 0.00 0.00 0.00 2.01
1949 1999 4.386867 TGTGTCGAGAAAGTTCAGAACT 57.613 40.909 10.27 10.27 45.46 3.01
1950 2000 5.464965 TTTGTGTCGAGAAAGTTCAGAAC 57.535 39.130 5.00 5.00 0.00 3.01
1974 2024 1.815003 GTGGTACCGTACTACAGCAGT 59.185 52.381 17.65 0.00 39.62 4.40
1978 2028 0.247814 CGCGTGGTACCGTACTACAG 60.248 60.000 21.06 15.36 39.79 2.74
1979 2029 1.793581 CGCGTGGTACCGTACTACA 59.206 57.895 21.06 5.07 39.79 2.74
1980 2030 1.583709 GCGCGTGGTACCGTACTAC 60.584 63.158 13.69 13.69 36.88 2.73
1982 2032 2.419057 TTTGCGCGTGGTACCGTACT 62.419 55.000 8.43 0.00 0.00 2.73
1983 2033 1.353609 ATTTGCGCGTGGTACCGTAC 61.354 55.000 8.43 0.00 0.00 3.67
1984 2034 0.669932 AATTTGCGCGTGGTACCGTA 60.670 50.000 8.43 0.00 0.00 4.02
1985 2035 0.669932 TAATTTGCGCGTGGTACCGT 60.670 50.000 8.43 0.00 0.00 4.83
1988 2038 0.444651 TGCTAATTTGCGCGTGGTAC 59.555 50.000 8.43 0.00 35.36 3.34
1989 2039 1.374560 ATGCTAATTTGCGCGTGGTA 58.625 45.000 8.43 0.00 35.36 3.25
1990 2040 0.525761 AATGCTAATTTGCGCGTGGT 59.474 45.000 8.43 0.00 35.36 4.16
1991 2041 0.915904 CAATGCTAATTTGCGCGTGG 59.084 50.000 8.43 0.00 35.36 4.94
1992 2042 0.915904 CCAATGCTAATTTGCGCGTG 59.084 50.000 8.43 5.13 35.36 5.34
1993 2043 0.525761 ACCAATGCTAATTTGCGCGT 59.474 45.000 8.43 0.00 35.36 6.01
1994 2044 2.466870 TACCAATGCTAATTTGCGCG 57.533 45.000 0.00 0.00 35.36 6.86
1995 2045 4.420168 TCTTTACCAATGCTAATTTGCGC 58.580 39.130 0.00 0.00 35.36 6.09
1996 2046 6.942886 TTTCTTTACCAATGCTAATTTGCG 57.057 33.333 7.37 0.00 35.36 4.85
1998 2048 8.229811 GCCTTTTTCTTTACCAATGCTAATTTG 58.770 33.333 0.00 0.00 0.00 2.32
2009 2059 5.937111 AGTACAGAGCCTTTTTCTTTACCA 58.063 37.500 0.00 0.00 31.35 3.25
2066 2124 0.734942 ACGAAGTGAATGTACGGGCG 60.735 55.000 0.00 0.00 42.51 6.13
2067 2125 1.435577 AACGAAGTGAATGTACGGGC 58.564 50.000 0.00 0.00 45.00 6.13
2100 2162 7.255942 CCAGAAAGGTCAGGATTAAACAAACAT 60.256 37.037 0.00 0.00 32.08 2.71
2103 2165 6.648879 CCAGAAAGGTCAGGATTAAACAAA 57.351 37.500 0.00 0.00 32.08 2.83
2120 2182 2.999355 GCAAAACAAGCAACACCAGAAA 59.001 40.909 0.00 0.00 0.00 2.52
2121 2183 2.028658 TGCAAAACAAGCAACACCAGAA 60.029 40.909 0.00 0.00 39.39 3.02
2123 2185 1.660104 GTGCAAAACAAGCAACACCAG 59.340 47.619 0.00 0.00 44.64 4.00
2198 2287 3.759581 ACCAATACAGATCCATGCATCC 58.240 45.455 0.00 0.00 0.00 3.51
2212 2301 3.003482 ACGCGAGATCTCACTACCAATAC 59.997 47.826 22.31 0.00 0.00 1.89
2223 2316 0.947960 TCAGATCCACGCGAGATCTC 59.052 55.000 30.15 13.05 45.87 2.75
2252 2345 5.250982 TGGATCAATCACATGGCATATCTC 58.749 41.667 0.00 0.00 0.00 2.75
2261 2354 9.668497 AGAATACATATCTGGATCAATCACATG 57.332 33.333 0.00 0.00 0.00 3.21
2354 2447 7.679881 TGGTATGGTCTAGTGATGATGGAATAT 59.320 37.037 0.00 0.00 0.00 1.28
2356 2449 5.846164 TGGTATGGTCTAGTGATGATGGAAT 59.154 40.000 0.00 0.00 0.00 3.01
2360 2453 7.864108 TTTTTGGTATGGTCTAGTGATGATG 57.136 36.000 0.00 0.00 0.00 3.07
2381 2474 5.112129 ACGAATCTGCCTATAGGGTTTTT 57.888 39.130 20.58 1.67 37.43 1.94
2388 2481 8.420374 TTTCTTGTTTACGAATCTGCCTATAG 57.580 34.615 0.00 0.00 0.00 1.31
2390 2483 7.865706 ATTTCTTGTTTACGAATCTGCCTAT 57.134 32.000 0.00 0.00 0.00 2.57
2392 2485 7.681939 TTATTTCTTGTTTACGAATCTGCCT 57.318 32.000 0.00 0.00 0.00 4.75
2394 2487 8.355806 CGTTTTATTTCTTGTTTACGAATCTGC 58.644 33.333 0.00 0.00 0.00 4.26
2396 2489 7.267600 CGCGTTTTATTTCTTGTTTACGAATCT 59.732 33.333 0.00 0.00 0.00 2.40
2397 2490 7.266756 TCGCGTTTTATTTCTTGTTTACGAATC 59.733 33.333 5.77 0.00 0.00 2.52
2398 2491 7.070798 TCGCGTTTTATTTCTTGTTTACGAAT 58.929 30.769 5.77 0.00 0.00 3.34
2402 2495 6.087028 TGCATCGCGTTTTATTTCTTGTTTAC 59.913 34.615 5.77 0.00 0.00 2.01
2419 2527 6.135400 TGTTAAATCTAAATGATGCATCGCG 58.865 36.000 21.34 0.00 35.21 5.87
2455 2823 8.562892 CAGGACATGCAGTATCCTATTTAAAAG 58.437 37.037 14.14 0.00 41.07 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.