Multiple sequence alignment - TraesCS6D01G066500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G066500 chr6D 100.000 5093 0 0 1 5093 32652159 32647067 0.000000e+00 9406
1 TraesCS6D01G066500 chr6A 94.701 3416 111 33 954 4357 37060227 37056870 0.000000e+00 5241
2 TraesCS6D01G066500 chr6A 89.362 188 20 0 4409 4596 37056872 37056685 2.370000e-58 237
3 TraesCS6D01G066500 chr6B 90.661 1799 102 27 2818 4596 68516972 68515220 0.000000e+00 2331
4 TraesCS6D01G066500 chr6B 89.756 615 33 14 895 1487 68519013 68518407 0.000000e+00 760
5 TraesCS6D01G066500 chr6B 97.668 343 8 0 2477 2819 68517490 68517148 1.580000e-164 590
6 TraesCS6D01G066500 chr6B 82.747 597 75 15 1812 2386 68518107 68517517 1.640000e-139 507
7 TraesCS6D01G066500 chr6B 86.711 301 31 7 4753 5049 68514947 68514652 4.920000e-85 326
8 TraesCS6D01G066500 chr2D 89.899 99 8 1 2381 2477 22421466 22421368 5.350000e-25 126
9 TraesCS6D01G066500 chr2B 86.607 112 12 3 2381 2491 482952361 482952470 2.490000e-23 121
10 TraesCS6D01G066500 chrUn 87.736 106 8 4 2381 2484 108364560 108364458 8.960000e-23 119
11 TraesCS6D01G066500 chr5A 87.500 104 10 1 2380 2480 71479971 71479868 3.220000e-22 117
12 TraesCS6D01G066500 chr5A 86.916 107 11 1 2381 2484 705825771 705825877 3.220000e-22 117
13 TraesCS6D01G066500 chr2A 88.000 100 11 1 2381 2480 641950181 641950083 3.220000e-22 117
14 TraesCS6D01G066500 chr3A 87.755 98 10 2 2381 2477 497650421 497650517 4.170000e-21 113
15 TraesCS6D01G066500 chr1B 87.629 97 12 0 2381 2477 268583004 268582908 4.170000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G066500 chr6D 32647067 32652159 5092 True 9406.0 9406 100.0000 1 5093 1 chr6D.!!$R1 5092
1 TraesCS6D01G066500 chr6A 37056685 37060227 3542 True 2739.0 5241 92.0315 954 4596 2 chr6A.!!$R1 3642
2 TraesCS6D01G066500 chr6B 68514652 68519013 4361 True 902.8 2331 89.5086 895 5049 5 chr6B.!!$R1 4154

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
558 559 0.040425 GCACACGTTTAACTGGGCTG 60.040 55.000 12.22 2.79 33.72 4.85 F
1351 1364 0.250038 CGCACCCAGATACCATCCTG 60.250 60.000 0.00 0.00 0.00 3.86 F
1506 1529 0.107165 AGGTCAGGGGCGAAATAAGC 60.107 55.000 0.00 0.00 0.00 3.09 F
1507 1530 0.393808 GGTCAGGGGCGAAATAAGCA 60.394 55.000 0.00 0.00 36.08 3.91 F
1888 2015 1.133823 TGGCATACCAAATGCGAGGAT 60.134 47.619 4.06 0.00 45.37 3.24 F
3007 3332 1.760613 TCCAGACACCGTGAGTCTTTT 59.239 47.619 5.28 0.00 43.47 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1487 1510 0.107165 GCTTATTTCGCCCCTGACCT 60.107 55.000 0.0 0.0 0.00 3.85 R
3075 3400 1.270274 GCACATCAATGACAACCTGCA 59.730 47.619 0.0 0.0 0.00 4.41 R
3234 3559 3.838317 TGCTCCCTCAGTTACAGTGTTAT 59.162 43.478 0.0 0.0 0.00 1.89 R
3657 4000 6.223852 AGGGTCGCAACTATAAGATATGTTG 58.776 40.000 0.0 0.0 41.64 3.33 R
3703 4046 1.406539 CAGATGGTAAACCTGGCATGC 59.593 52.381 9.9 9.9 36.82 4.06 R
5051 5523 0.039527 AATTTTTCGCACAGACGGCC 60.040 50.000 0.0 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.810310 AAAAATTTGAAGACACGGCCA 57.190 38.095 2.24 0.00 0.00 5.36
26 27 4.335400 AAAAATTTGAAGACACGGCCAT 57.665 36.364 2.24 0.00 0.00 4.40
27 28 4.335400 AAAATTTGAAGACACGGCCATT 57.665 36.364 2.24 0.00 0.00 3.16
28 29 4.335400 AAATTTGAAGACACGGCCATTT 57.665 36.364 2.24 0.00 0.00 2.32
29 30 4.335400 AATTTGAAGACACGGCCATTTT 57.665 36.364 2.24 0.00 0.00 1.82
30 31 3.810310 TTTGAAGACACGGCCATTTTT 57.190 38.095 2.24 0.00 0.00 1.94
156 157 8.494347 TCAAATTGCGAATGACTTTTAAAATGG 58.506 29.630 0.09 0.00 0.00 3.16
157 158 7.961325 AATTGCGAATGACTTTTAAAATGGT 57.039 28.000 0.09 0.00 0.00 3.55
158 159 6.761731 TTGCGAATGACTTTTAAAATGGTG 57.238 33.333 0.09 0.00 0.00 4.17
159 160 6.078202 TGCGAATGACTTTTAAAATGGTGA 57.922 33.333 0.09 0.00 0.00 4.02
160 161 6.507900 TGCGAATGACTTTTAAAATGGTGAA 58.492 32.000 0.09 0.00 0.00 3.18
161 162 6.419413 TGCGAATGACTTTTAAAATGGTGAAC 59.581 34.615 0.09 0.00 0.00 3.18
162 163 6.419413 GCGAATGACTTTTAAAATGGTGAACA 59.581 34.615 0.09 0.00 0.00 3.18
163 164 7.043059 GCGAATGACTTTTAAAATGGTGAACAA 60.043 33.333 0.09 0.00 0.00 2.83
164 165 8.977505 CGAATGACTTTTAAAATGGTGAACAAT 58.022 29.630 0.09 0.00 0.00 2.71
207 208 9.967245 GGTTTAGCGAATAATTTTTGAAAATCC 57.033 29.630 2.46 0.00 37.62 3.01
212 213 9.050601 AGCGAATAATTTTTGAAAATCCAAACA 57.949 25.926 2.46 0.00 37.62 2.83
213 214 9.657121 GCGAATAATTTTTGAAAATCCAAACAA 57.343 25.926 2.46 0.00 37.62 2.83
386 387 9.691362 TTGTAAAGAAAACAAATAGGAGAATGC 57.309 29.630 0.00 0.00 34.04 3.56
387 388 9.077885 TGTAAAGAAAACAAATAGGAGAATGCT 57.922 29.630 0.00 0.00 42.36 3.79
388 389 9.561270 GTAAAGAAAACAAATAGGAGAATGCTC 57.439 33.333 0.00 0.00 38.32 4.26
397 398 3.670105 GAGAATGCTCCCCAAACCA 57.330 52.632 0.00 0.00 35.01 3.67
398 399 1.467920 GAGAATGCTCCCCAAACCAG 58.532 55.000 0.00 0.00 35.01 4.00
399 400 0.779997 AGAATGCTCCCCAAACCAGT 59.220 50.000 0.00 0.00 0.00 4.00
400 401 1.992557 AGAATGCTCCCCAAACCAGTA 59.007 47.619 0.00 0.00 0.00 2.74
401 402 2.378547 AGAATGCTCCCCAAACCAGTAA 59.621 45.455 0.00 0.00 0.00 2.24
402 403 2.990740 ATGCTCCCCAAACCAGTAAA 57.009 45.000 0.00 0.00 0.00 2.01
403 404 1.989706 TGCTCCCCAAACCAGTAAAC 58.010 50.000 0.00 0.00 0.00 2.01
404 405 1.254026 GCTCCCCAAACCAGTAAACC 58.746 55.000 0.00 0.00 0.00 3.27
405 406 1.203013 GCTCCCCAAACCAGTAAACCT 60.203 52.381 0.00 0.00 0.00 3.50
406 407 2.791655 CTCCCCAAACCAGTAAACCTC 58.208 52.381 0.00 0.00 0.00 3.85
407 408 1.072648 TCCCCAAACCAGTAAACCTCG 59.927 52.381 0.00 0.00 0.00 4.63
408 409 1.530323 CCCAAACCAGTAAACCTCGG 58.470 55.000 0.00 0.00 0.00 4.63
409 410 1.530323 CCAAACCAGTAAACCTCGGG 58.470 55.000 0.00 0.00 0.00 5.14
410 411 1.202842 CCAAACCAGTAAACCTCGGGT 60.203 52.381 0.00 0.00 37.65 5.28
411 412 2.038820 CCAAACCAGTAAACCTCGGGTA 59.961 50.000 0.00 0.00 33.12 3.69
412 413 3.332034 CAAACCAGTAAACCTCGGGTAG 58.668 50.000 0.00 0.00 33.12 3.18
413 414 2.610438 ACCAGTAAACCTCGGGTAGA 57.390 50.000 0.00 0.00 33.12 2.59
414 415 2.893424 ACCAGTAAACCTCGGGTAGAA 58.107 47.619 0.00 0.00 33.12 2.10
415 416 2.830321 ACCAGTAAACCTCGGGTAGAAG 59.170 50.000 0.00 0.00 33.12 2.85
416 417 2.167900 CCAGTAAACCTCGGGTAGAAGG 59.832 54.545 0.00 0.00 33.12 3.46
417 418 2.830321 CAGTAAACCTCGGGTAGAAGGT 59.170 50.000 0.00 0.00 33.12 3.50
418 419 3.095332 AGTAAACCTCGGGTAGAAGGTC 58.905 50.000 0.00 0.00 33.12 3.85
419 420 2.322339 AAACCTCGGGTAGAAGGTCT 57.678 50.000 0.00 0.00 33.12 3.85
420 421 2.322339 AACCTCGGGTAGAAGGTCTT 57.678 50.000 0.00 0.00 33.12 3.01
421 422 1.558233 ACCTCGGGTAGAAGGTCTTG 58.442 55.000 0.00 0.00 32.11 3.02
422 423 0.175989 CCTCGGGTAGAAGGTCTTGC 59.824 60.000 0.00 0.00 0.00 4.01
423 424 1.187087 CTCGGGTAGAAGGTCTTGCT 58.813 55.000 0.00 0.00 0.00 3.91
424 425 2.376109 CTCGGGTAGAAGGTCTTGCTA 58.624 52.381 0.00 0.00 0.00 3.49
425 426 2.959707 CTCGGGTAGAAGGTCTTGCTAT 59.040 50.000 0.00 0.00 0.00 2.97
426 427 4.142790 CTCGGGTAGAAGGTCTTGCTATA 58.857 47.826 0.00 0.00 0.00 1.31
427 428 4.737578 TCGGGTAGAAGGTCTTGCTATAT 58.262 43.478 0.00 0.00 0.00 0.86
428 429 4.765856 TCGGGTAGAAGGTCTTGCTATATC 59.234 45.833 0.00 0.00 0.00 1.63
429 430 4.767928 CGGGTAGAAGGTCTTGCTATATCT 59.232 45.833 0.00 0.00 0.00 1.98
430 431 5.106078 CGGGTAGAAGGTCTTGCTATATCTC 60.106 48.000 0.00 0.00 0.00 2.75
431 432 6.014012 GGGTAGAAGGTCTTGCTATATCTCT 58.986 44.000 0.00 0.00 0.00 3.10
432 433 6.071616 GGGTAGAAGGTCTTGCTATATCTCTG 60.072 46.154 0.00 0.00 0.00 3.35
433 434 6.492087 GGTAGAAGGTCTTGCTATATCTCTGT 59.508 42.308 0.00 0.00 0.00 3.41
434 435 6.403866 AGAAGGTCTTGCTATATCTCTGTG 57.596 41.667 0.00 0.00 0.00 3.66
435 436 4.599047 AGGTCTTGCTATATCTCTGTGC 57.401 45.455 0.00 0.00 0.00 4.57
436 437 3.963374 AGGTCTTGCTATATCTCTGTGCA 59.037 43.478 0.00 0.00 0.00 4.57
437 438 4.592351 AGGTCTTGCTATATCTCTGTGCAT 59.408 41.667 0.00 0.00 33.50 3.96
438 439 5.777223 AGGTCTTGCTATATCTCTGTGCATA 59.223 40.000 0.00 0.00 33.50 3.14
439 440 6.071447 AGGTCTTGCTATATCTCTGTGCATAG 60.071 42.308 3.68 3.68 33.50 2.23
440 441 6.071672 GGTCTTGCTATATCTCTGTGCATAGA 60.072 42.308 12.98 12.98 33.50 1.98
441 442 6.806249 GTCTTGCTATATCTCTGTGCATAGAC 59.194 42.308 9.37 0.00 36.16 2.59
442 443 6.718912 TCTTGCTATATCTCTGTGCATAGACT 59.281 38.462 9.37 2.76 33.50 3.24
443 444 6.507958 TGCTATATCTCTGTGCATAGACTC 57.492 41.667 9.37 0.00 0.00 3.36
444 445 5.123027 TGCTATATCTCTGTGCATAGACTCG 59.877 44.000 9.37 0.35 0.00 4.18
445 446 5.352846 GCTATATCTCTGTGCATAGACTCGA 59.647 44.000 9.37 6.22 0.00 4.04
446 447 3.980646 ATCTCTGTGCATAGACTCGAC 57.019 47.619 9.37 0.00 0.00 4.20
447 448 2.711542 TCTCTGTGCATAGACTCGACA 58.288 47.619 9.37 0.00 0.00 4.35
448 449 2.420372 TCTCTGTGCATAGACTCGACAC 59.580 50.000 9.37 0.00 0.00 3.67
449 450 2.421775 CTCTGTGCATAGACTCGACACT 59.578 50.000 9.37 0.00 32.49 3.55
450 451 2.820197 TCTGTGCATAGACTCGACACTT 59.180 45.455 9.37 0.00 32.49 3.16
451 452 3.119814 TCTGTGCATAGACTCGACACTTC 60.120 47.826 9.37 0.00 32.49 3.01
453 454 1.192793 GCATAGACTCGACACTTCGC 58.807 55.000 0.00 0.00 45.46 4.70
454 455 1.828832 CATAGACTCGACACTTCGCC 58.171 55.000 0.00 0.00 45.46 5.54
455 456 0.377554 ATAGACTCGACACTTCGCCG 59.622 55.000 0.00 0.00 45.46 6.46
456 457 2.249557 TAGACTCGACACTTCGCCGC 62.250 60.000 0.00 0.00 45.46 6.53
457 458 3.891586 GACTCGACACTTCGCCGCA 62.892 63.158 0.00 0.00 45.46 5.69
458 459 3.175240 CTCGACACTTCGCCGCAG 61.175 66.667 0.00 0.00 45.46 5.18
459 460 3.610791 CTCGACACTTCGCCGCAGA 62.611 63.158 0.00 0.00 45.46 4.26
460 461 2.733218 CGACACTTCGCCGCAGAA 60.733 61.111 0.00 0.00 38.71 3.02
461 462 2.094659 CGACACTTCGCCGCAGAAT 61.095 57.895 0.00 0.00 38.71 2.40
462 463 1.421485 GACACTTCGCCGCAGAATG 59.579 57.895 0.00 0.16 40.87 2.67
478 479 5.288543 CAGAATGCGGCTAATAGGAAATC 57.711 43.478 0.00 0.00 0.00 2.17
479 480 3.997021 AGAATGCGGCTAATAGGAAATCG 59.003 43.478 0.00 0.00 0.00 3.34
480 481 2.163818 TGCGGCTAATAGGAAATCGG 57.836 50.000 0.00 0.00 0.00 4.18
481 482 0.796927 GCGGCTAATAGGAAATCGGC 59.203 55.000 0.00 0.00 0.00 5.54
482 483 1.876416 GCGGCTAATAGGAAATCGGCA 60.876 52.381 0.00 0.00 0.00 5.69
483 484 2.489971 CGGCTAATAGGAAATCGGCAA 58.510 47.619 0.00 0.00 0.00 4.52
484 485 3.074412 CGGCTAATAGGAAATCGGCAAT 58.926 45.455 0.00 0.00 0.00 3.56
485 486 3.502211 CGGCTAATAGGAAATCGGCAATT 59.498 43.478 0.00 0.00 0.00 2.32
486 487 4.613622 CGGCTAATAGGAAATCGGCAATTG 60.614 45.833 0.00 0.00 0.00 2.32
487 488 4.321230 GGCTAATAGGAAATCGGCAATTGG 60.321 45.833 7.72 0.00 0.00 3.16
488 489 4.278419 GCTAATAGGAAATCGGCAATTGGT 59.722 41.667 7.72 0.00 0.00 3.67
489 490 5.472137 GCTAATAGGAAATCGGCAATTGGTA 59.528 40.000 7.72 0.00 0.00 3.25
490 491 6.151144 GCTAATAGGAAATCGGCAATTGGTAT 59.849 38.462 7.72 0.00 0.00 2.73
491 492 6.976934 AATAGGAAATCGGCAATTGGTATT 57.023 33.333 7.72 0.00 0.00 1.89
492 493 6.976934 ATAGGAAATCGGCAATTGGTATTT 57.023 33.333 7.72 0.94 0.00 1.40
493 494 5.009854 AGGAAATCGGCAATTGGTATTTG 57.990 39.130 7.72 0.00 0.00 2.32
494 495 3.555547 GGAAATCGGCAATTGGTATTTGC 59.444 43.478 7.72 0.00 46.82 3.68
495 496 4.432712 GAAATCGGCAATTGGTATTTGCT 58.567 39.130 7.72 0.00 46.74 3.91
497 498 1.280066 CGGCAATTGGTATTTGCTGC 58.720 50.000 7.72 0.00 46.16 5.25
498 499 1.403914 CGGCAATTGGTATTTGCTGCA 60.404 47.619 7.72 0.00 46.16 4.41
499 500 2.739287 CGGCAATTGGTATTTGCTGCAT 60.739 45.455 1.84 0.00 46.16 3.96
500 501 3.272581 GGCAATTGGTATTTGCTGCATT 58.727 40.909 1.84 0.00 46.74 3.56
501 502 3.310501 GGCAATTGGTATTTGCTGCATTC 59.689 43.478 1.84 0.00 46.74 2.67
502 503 3.310501 GCAATTGGTATTTGCTGCATTCC 59.689 43.478 1.84 4.68 44.71 3.01
503 504 2.937469 TTGGTATTTGCTGCATTCCG 57.063 45.000 1.84 0.00 0.00 4.30
504 505 1.102154 TGGTATTTGCTGCATTCCGG 58.898 50.000 1.84 0.00 0.00 5.14
505 506 0.249031 GGTATTTGCTGCATTCCGGC 60.249 55.000 1.84 0.00 46.38 6.13
510 511 3.731136 GCTGCATTCCGGCGAATA 58.269 55.556 9.30 0.00 36.54 1.75
511 512 2.021722 GCTGCATTCCGGCGAATAA 58.978 52.632 9.30 0.00 36.54 1.40
512 513 0.593128 GCTGCATTCCGGCGAATAAT 59.407 50.000 9.30 2.01 36.54 1.28
513 514 1.400242 GCTGCATTCCGGCGAATAATC 60.400 52.381 9.30 1.16 36.54 1.75
514 515 1.872952 CTGCATTCCGGCGAATAATCA 59.127 47.619 9.30 5.31 36.54 2.57
515 516 1.601903 TGCATTCCGGCGAATAATCAC 59.398 47.619 9.30 0.88 36.54 3.06
516 517 1.873591 GCATTCCGGCGAATAATCACT 59.126 47.619 9.30 0.00 36.54 3.41
517 518 2.349817 GCATTCCGGCGAATAATCACTG 60.350 50.000 9.30 0.00 36.54 3.66
518 519 2.971660 TTCCGGCGAATAATCACTGA 57.028 45.000 9.30 0.00 0.00 3.41
519 520 3.469008 TTCCGGCGAATAATCACTGAT 57.531 42.857 9.30 0.00 0.00 2.90
520 521 3.469008 TCCGGCGAATAATCACTGATT 57.531 42.857 9.30 9.26 36.20 2.57
521 522 3.390135 TCCGGCGAATAATCACTGATTC 58.610 45.455 9.30 0.00 33.95 2.52
529 530 6.811299 CGAATAATCACTGATTCGTACATGG 58.189 40.000 7.57 0.00 45.87 3.66
530 531 6.128822 CGAATAATCACTGATTCGTACATGGG 60.129 42.308 7.57 0.00 45.87 4.00
531 532 4.753516 AATCACTGATTCGTACATGGGA 57.246 40.909 0.00 0.00 0.00 4.37
532 533 4.753516 ATCACTGATTCGTACATGGGAA 57.246 40.909 0.00 0.00 0.00 3.97
533 534 3.857052 TCACTGATTCGTACATGGGAAC 58.143 45.455 0.00 0.00 0.00 3.62
534 535 6.351456 TAATCACTGATTCGTACATGGGAACA 60.351 38.462 7.57 0.00 37.89 3.18
535 536 7.634869 TAATCACTGATTCGTACATGGGAACAT 60.635 37.037 7.57 0.00 41.53 2.71
544 545 4.294523 TGGGAACATAGCGCACAC 57.705 55.556 11.47 0.00 33.40 3.82
545 546 1.739929 TGGGAACATAGCGCACACG 60.740 57.895 11.47 0.00 37.74 4.49
546 547 1.740296 GGGAACATAGCGCACACGT 60.740 57.895 11.47 0.00 42.83 4.49
547 548 1.296056 GGGAACATAGCGCACACGTT 61.296 55.000 11.47 7.24 42.83 3.99
548 549 0.515564 GGAACATAGCGCACACGTTT 59.484 50.000 11.47 0.00 42.83 3.60
549 550 1.727880 GGAACATAGCGCACACGTTTA 59.272 47.619 11.47 0.00 42.83 2.01
550 551 2.158058 GGAACATAGCGCACACGTTTAA 59.842 45.455 11.47 0.00 42.83 1.52
551 552 2.867456 ACATAGCGCACACGTTTAAC 57.133 45.000 11.47 0.00 42.83 2.01
552 553 2.409975 ACATAGCGCACACGTTTAACT 58.590 42.857 11.47 0.00 42.83 2.24
553 554 2.156891 ACATAGCGCACACGTTTAACTG 59.843 45.455 11.47 0.00 42.83 3.16
554 555 1.141645 TAGCGCACACGTTTAACTGG 58.858 50.000 11.47 0.00 42.83 4.00
555 556 1.082366 GCGCACACGTTTAACTGGG 60.082 57.895 0.30 0.00 42.83 4.45
556 557 1.082366 CGCACACGTTTAACTGGGC 60.082 57.895 10.29 10.29 33.12 5.36
557 558 1.503818 CGCACACGTTTAACTGGGCT 61.504 55.000 15.61 0.00 34.41 5.19
558 559 0.040425 GCACACGTTTAACTGGGCTG 60.040 55.000 12.22 2.79 33.72 4.85
559 560 0.591170 CACACGTTTAACTGGGCTGG 59.409 55.000 0.00 0.00 0.00 4.85
560 561 1.170290 ACACGTTTAACTGGGCTGGC 61.170 55.000 0.00 0.00 0.00 4.85
561 562 1.602605 ACGTTTAACTGGGCTGGCC 60.603 57.895 14.23 14.23 0.00 5.36
571 572 3.476419 GGCTGGCCCGCTTAGGTA 61.476 66.667 19.30 0.00 38.74 3.08
572 573 2.819284 GGCTGGCCCGCTTAGGTAT 61.819 63.158 19.30 0.00 38.74 2.73
573 574 1.598130 GCTGGCCCGCTTAGGTATG 60.598 63.158 12.53 0.00 38.74 2.39
574 575 2.040009 GCTGGCCCGCTTAGGTATGA 62.040 60.000 12.53 0.00 38.74 2.15
575 576 0.687354 CTGGCCCGCTTAGGTATGAT 59.313 55.000 0.00 0.00 38.74 2.45
576 577 1.072331 CTGGCCCGCTTAGGTATGATT 59.928 52.381 0.00 0.00 38.74 2.57
577 578 1.493022 TGGCCCGCTTAGGTATGATTT 59.507 47.619 0.00 0.00 38.74 2.17
578 579 2.092103 TGGCCCGCTTAGGTATGATTTT 60.092 45.455 0.00 0.00 38.74 1.82
579 580 2.956333 GGCCCGCTTAGGTATGATTTTT 59.044 45.455 0.00 0.00 38.74 1.94
580 581 3.004419 GGCCCGCTTAGGTATGATTTTTC 59.996 47.826 0.00 0.00 38.74 2.29
581 582 3.004419 GCCCGCTTAGGTATGATTTTTCC 59.996 47.826 0.00 0.00 38.74 3.13
582 583 4.461198 CCCGCTTAGGTATGATTTTTCCT 58.539 43.478 0.00 0.00 38.74 3.36
583 584 4.275936 CCCGCTTAGGTATGATTTTTCCTG 59.724 45.833 0.00 0.00 38.74 3.86
584 585 5.123227 CCGCTTAGGTATGATTTTTCCTGA 58.877 41.667 0.00 0.00 34.51 3.86
585 586 5.765182 CCGCTTAGGTATGATTTTTCCTGAT 59.235 40.000 0.00 0.00 34.51 2.90
586 587 6.263168 CCGCTTAGGTATGATTTTTCCTGATT 59.737 38.462 0.00 0.00 34.51 2.57
587 588 7.201821 CCGCTTAGGTATGATTTTTCCTGATTT 60.202 37.037 0.00 0.00 34.51 2.17
588 589 8.190784 CGCTTAGGTATGATTTTTCCTGATTTT 58.809 33.333 0.00 0.00 0.00 1.82
589 590 9.305925 GCTTAGGTATGATTTTTCCTGATTTTG 57.694 33.333 0.00 0.00 0.00 2.44
592 593 8.884124 AGGTATGATTTTTCCTGATTTTGAGA 57.116 30.769 0.00 0.00 0.00 3.27
593 594 9.312904 AGGTATGATTTTTCCTGATTTTGAGAA 57.687 29.630 0.00 0.00 0.00 2.87
598 599 9.492973 TGATTTTTCCTGATTTTGAGAATTTCC 57.507 29.630 0.00 0.00 0.00 3.13
599 600 7.945033 TTTTTCCTGATTTTGAGAATTTCCG 57.055 32.000 0.00 0.00 0.00 4.30
600 601 5.643379 TTCCTGATTTTGAGAATTTCCGG 57.357 39.130 0.00 0.00 0.00 5.14
601 602 4.917385 TCCTGATTTTGAGAATTTCCGGA 58.083 39.130 0.00 0.00 0.00 5.14
602 603 5.321102 TCCTGATTTTGAGAATTTCCGGAA 58.679 37.500 14.35 14.35 0.00 4.30
603 604 5.415701 TCCTGATTTTGAGAATTTCCGGAAG 59.584 40.000 17.97 0.00 0.00 3.46
604 605 5.415701 CCTGATTTTGAGAATTTCCGGAAGA 59.584 40.000 17.97 9.16 0.00 2.87
605 606 6.096001 CCTGATTTTGAGAATTTCCGGAAGAT 59.904 38.462 17.97 10.31 0.00 2.40
606 607 7.363268 CCTGATTTTGAGAATTTCCGGAAGATT 60.363 37.037 17.97 18.30 0.00 2.40
607 608 7.538575 TGATTTTGAGAATTTCCGGAAGATTC 58.461 34.615 27.25 27.25 0.00 2.52
608 609 7.394359 TGATTTTGAGAATTTCCGGAAGATTCT 59.606 33.333 32.19 32.19 41.47 2.40
609 610 6.500684 TTTGAGAATTTCCGGAAGATTCTG 57.499 37.500 34.43 2.16 39.52 3.02
615 616 3.768633 CCGGAAGATTCTGGTCTGG 57.231 57.895 11.65 0.00 46.49 3.86
616 617 0.905357 CCGGAAGATTCTGGTCTGGT 59.095 55.000 11.65 0.00 46.49 4.00
617 618 1.279271 CCGGAAGATTCTGGTCTGGTT 59.721 52.381 11.65 0.00 46.49 3.67
618 619 2.622436 CGGAAGATTCTGGTCTGGTTC 58.378 52.381 0.00 0.00 0.00 3.62
619 620 2.622436 GGAAGATTCTGGTCTGGTTCG 58.378 52.381 0.00 0.00 0.00 3.95
620 621 2.622436 GAAGATTCTGGTCTGGTTCGG 58.378 52.381 0.00 0.00 0.00 4.30
621 622 0.905357 AGATTCTGGTCTGGTTCGGG 59.095 55.000 0.00 0.00 0.00 5.14
622 623 0.613777 GATTCTGGTCTGGTTCGGGT 59.386 55.000 0.00 0.00 0.00 5.28
623 624 0.613777 ATTCTGGTCTGGTTCGGGTC 59.386 55.000 0.00 0.00 0.00 4.46
624 625 1.477685 TTCTGGTCTGGTTCGGGTCC 61.478 60.000 0.00 0.00 0.00 4.46
625 626 2.122769 TGGTCTGGTTCGGGTCCA 60.123 61.111 0.00 0.00 0.00 4.02
630 631 3.414486 CTGGTTCGGGTCCAGTTTT 57.586 52.632 11.38 0.00 45.09 2.43
631 632 0.951558 CTGGTTCGGGTCCAGTTTTG 59.048 55.000 11.38 0.00 45.09 2.44
632 633 0.256464 TGGTTCGGGTCCAGTTTTGT 59.744 50.000 0.00 0.00 0.00 2.83
633 634 1.489649 TGGTTCGGGTCCAGTTTTGTA 59.510 47.619 0.00 0.00 0.00 2.41
634 635 2.106857 TGGTTCGGGTCCAGTTTTGTAT 59.893 45.455 0.00 0.00 0.00 2.29
635 636 3.151554 GGTTCGGGTCCAGTTTTGTATT 58.848 45.455 0.00 0.00 0.00 1.89
636 637 3.570975 GGTTCGGGTCCAGTTTTGTATTT 59.429 43.478 0.00 0.00 0.00 1.40
637 638 4.038282 GGTTCGGGTCCAGTTTTGTATTTT 59.962 41.667 0.00 0.00 0.00 1.82
638 639 5.217393 GTTCGGGTCCAGTTTTGTATTTTC 58.783 41.667 0.00 0.00 0.00 2.29
639 640 4.721132 TCGGGTCCAGTTTTGTATTTTCT 58.279 39.130 0.00 0.00 0.00 2.52
640 641 5.134661 TCGGGTCCAGTTTTGTATTTTCTT 58.865 37.500 0.00 0.00 0.00 2.52
641 642 5.239963 TCGGGTCCAGTTTTGTATTTTCTTC 59.760 40.000 0.00 0.00 0.00 2.87
642 643 5.564063 CGGGTCCAGTTTTGTATTTTCTTCC 60.564 44.000 0.00 0.00 0.00 3.46
643 644 5.538813 GGGTCCAGTTTTGTATTTTCTTCCT 59.461 40.000 0.00 0.00 0.00 3.36
644 645 6.041637 GGGTCCAGTTTTGTATTTTCTTCCTT 59.958 38.462 0.00 0.00 0.00 3.36
645 646 7.418597 GGGTCCAGTTTTGTATTTTCTTCCTTT 60.419 37.037 0.00 0.00 0.00 3.11
646 647 7.985184 GGTCCAGTTTTGTATTTTCTTCCTTTT 59.015 33.333 0.00 0.00 0.00 2.27
647 648 9.378551 GTCCAGTTTTGTATTTTCTTCCTTTTT 57.621 29.630 0.00 0.00 0.00 1.94
660 661 9.647797 TTTTCTTCCTTTTTACTGGTTTTCTTC 57.352 29.630 0.00 0.00 0.00 2.87
661 662 7.023197 TCTTCCTTTTTACTGGTTTTCTTCG 57.977 36.000 0.00 0.00 0.00 3.79
662 663 5.761165 TCCTTTTTACTGGTTTTCTTCGG 57.239 39.130 0.00 0.00 0.00 4.30
663 664 4.581409 TCCTTTTTACTGGTTTTCTTCGGG 59.419 41.667 0.00 0.00 0.00 5.14
664 665 4.340097 CCTTTTTACTGGTTTTCTTCGGGT 59.660 41.667 0.00 0.00 0.00 5.28
665 666 5.163488 CCTTTTTACTGGTTTTCTTCGGGTT 60.163 40.000 0.00 0.00 0.00 4.11
666 667 5.918426 TTTTACTGGTTTTCTTCGGGTTT 57.082 34.783 0.00 0.00 0.00 3.27
667 668 5.918426 TTTACTGGTTTTCTTCGGGTTTT 57.082 34.783 0.00 0.00 0.00 2.43
668 669 5.918426 TTACTGGTTTTCTTCGGGTTTTT 57.082 34.783 0.00 0.00 0.00 1.94
669 670 4.380841 ACTGGTTTTCTTCGGGTTTTTC 57.619 40.909 0.00 0.00 0.00 2.29
670 671 3.131577 ACTGGTTTTCTTCGGGTTTTTCC 59.868 43.478 0.00 0.00 0.00 3.13
671 672 3.367321 TGGTTTTCTTCGGGTTTTTCCT 58.633 40.909 0.00 0.00 36.25 3.36
672 673 3.770388 TGGTTTTCTTCGGGTTTTTCCTT 59.230 39.130 0.00 0.00 36.25 3.36
673 674 4.223255 TGGTTTTCTTCGGGTTTTTCCTTT 59.777 37.500 0.00 0.00 36.25 3.11
674 675 5.180271 GGTTTTCTTCGGGTTTTTCCTTTT 58.820 37.500 0.00 0.00 36.25 2.27
675 676 5.644636 GGTTTTCTTCGGGTTTTTCCTTTTT 59.355 36.000 0.00 0.00 36.25 1.94
676 677 6.183360 GGTTTTCTTCGGGTTTTTCCTTTTTC 60.183 38.462 0.00 0.00 36.25 2.29
677 678 5.662674 TTCTTCGGGTTTTTCCTTTTTCA 57.337 34.783 0.00 0.00 36.25 2.69
678 679 5.662674 TCTTCGGGTTTTTCCTTTTTCAA 57.337 34.783 0.00 0.00 36.25 2.69
679 680 6.228616 TCTTCGGGTTTTTCCTTTTTCAAT 57.771 33.333 0.00 0.00 36.25 2.57
680 681 6.645306 TCTTCGGGTTTTTCCTTTTTCAATT 58.355 32.000 0.00 0.00 36.25 2.32
681 682 7.106890 TCTTCGGGTTTTTCCTTTTTCAATTT 58.893 30.769 0.00 0.00 36.25 1.82
682 683 8.258708 TCTTCGGGTTTTTCCTTTTTCAATTTA 58.741 29.630 0.00 0.00 36.25 1.40
683 684 7.773864 TCGGGTTTTTCCTTTTTCAATTTAC 57.226 32.000 0.00 0.00 36.25 2.01
684 685 7.328737 TCGGGTTTTTCCTTTTTCAATTTACA 58.671 30.769 0.00 0.00 36.25 2.41
685 686 7.988028 TCGGGTTTTTCCTTTTTCAATTTACAT 59.012 29.630 0.00 0.00 36.25 2.29
686 687 8.616942 CGGGTTTTTCCTTTTTCAATTTACATT 58.383 29.630 0.00 0.00 36.25 2.71
770 771 9.952030 TTTTTCCAAAAATGTTAGAAAACCTCT 57.048 25.926 6.15 0.00 36.47 3.69
817 818 8.967664 TGTTAGTTATGTAGAAAAACAGTGGT 57.032 30.769 0.00 0.00 31.70 4.16
818 819 8.832521 TGTTAGTTATGTAGAAAAACAGTGGTG 58.167 33.333 0.00 0.00 31.70 4.17
819 820 8.833493 GTTAGTTATGTAGAAAAACAGTGGTGT 58.167 33.333 0.00 0.00 39.19 4.16
851 852 7.724490 AAATCCTCTTTTAAGAATCTTGGGG 57.276 36.000 5.64 0.00 34.03 4.96
852 853 6.658555 ATCCTCTTTTAAGAATCTTGGGGA 57.341 37.500 5.64 3.95 34.03 4.81
853 854 6.658555 TCCTCTTTTAAGAATCTTGGGGAT 57.341 37.500 5.64 0.00 34.03 3.85
854 855 7.044496 TCCTCTTTTAAGAATCTTGGGGATT 57.956 36.000 5.64 0.00 46.24 3.01
855 856 8.170121 TCCTCTTTTAAGAATCTTGGGGATTA 57.830 34.615 5.64 0.00 43.90 1.75
856 857 8.620177 TCCTCTTTTAAGAATCTTGGGGATTAA 58.380 33.333 5.64 0.00 43.90 1.40
857 858 9.255029 CCTCTTTTAAGAATCTTGGGGATTAAA 57.745 33.333 5.64 0.00 43.90 1.52
865 866 8.753497 AGAATCTTGGGGATTAAATAGTTCAC 57.247 34.615 0.00 0.00 43.90 3.18
866 867 8.336235 AGAATCTTGGGGATTAAATAGTTCACA 58.664 33.333 0.00 0.00 43.90 3.58
867 868 9.136323 GAATCTTGGGGATTAAATAGTTCACAT 57.864 33.333 0.00 0.00 43.90 3.21
868 869 8.697507 ATCTTGGGGATTAAATAGTTCACATC 57.302 34.615 0.00 0.00 0.00 3.06
869 870 7.872138 TCTTGGGGATTAAATAGTTCACATCT 58.128 34.615 0.00 0.00 0.00 2.90
870 871 8.336235 TCTTGGGGATTAAATAGTTCACATCTT 58.664 33.333 0.00 0.00 0.00 2.40
871 872 8.893563 TTGGGGATTAAATAGTTCACATCTTT 57.106 30.769 0.00 0.00 0.00 2.52
872 873 8.519799 TGGGGATTAAATAGTTCACATCTTTC 57.480 34.615 0.00 0.00 0.00 2.62
873 874 8.336235 TGGGGATTAAATAGTTCACATCTTTCT 58.664 33.333 0.00 0.00 0.00 2.52
874 875 8.624776 GGGGATTAAATAGTTCACATCTTTCTG 58.375 37.037 0.00 0.00 0.00 3.02
875 876 9.396022 GGGATTAAATAGTTCACATCTTTCTGA 57.604 33.333 0.00 0.00 0.00 3.27
879 880 6.749923 AATAGTTCACATCTTTCTGAAGGC 57.250 37.500 0.00 0.00 33.56 4.35
880 881 3.416156 AGTTCACATCTTTCTGAAGGCC 58.584 45.455 0.00 0.00 33.56 5.19
881 882 3.149196 GTTCACATCTTTCTGAAGGCCA 58.851 45.455 5.01 0.00 33.56 5.36
882 883 3.063510 TCACATCTTTCTGAAGGCCAG 57.936 47.619 5.01 0.00 44.27 4.85
911 912 1.398390 GGTGCGCTGAGGAAATAACAG 59.602 52.381 9.73 0.00 35.14 3.16
933 934 2.284552 GCCCAAAAGCCCATCCCA 60.285 61.111 0.00 0.00 0.00 4.37
946 947 3.428862 GCCCATCCCAAAAGATAAACACG 60.429 47.826 0.00 0.00 0.00 4.49
947 948 4.013728 CCCATCCCAAAAGATAAACACGA 58.986 43.478 0.00 0.00 0.00 4.35
951 952 4.320870 TCCCAAAAGATAAACACGAGACC 58.679 43.478 0.00 0.00 0.00 3.85
1076 1089 1.003573 ACCTCCTCCCCTCCATCAC 59.996 63.158 0.00 0.00 0.00 3.06
1261 1274 0.963962 GGTGGTGGTCTCGTTCTACA 59.036 55.000 0.00 0.00 0.00 2.74
1344 1357 4.110493 GTGAGCGCACCCAGATAC 57.890 61.111 11.47 0.00 39.14 2.24
1350 1363 2.044806 GCGCACCCAGATACCATCCT 62.045 60.000 0.30 0.00 0.00 3.24
1351 1364 0.250038 CGCACCCAGATACCATCCTG 60.250 60.000 0.00 0.00 0.00 3.86
1404 1419 1.668419 GCCATCGCTTGTGACCTAAT 58.332 50.000 0.00 0.00 0.00 1.73
1411 1426 5.791336 TCGCTTGTGACCTAATGAGATAT 57.209 39.130 0.00 0.00 0.00 1.63
1412 1427 6.894339 TCGCTTGTGACCTAATGAGATATA 57.106 37.500 0.00 0.00 0.00 0.86
1479 1502 4.042809 TGCCAGGGAAGACTAGAAAAATGA 59.957 41.667 0.00 0.00 0.00 2.57
1487 1510 7.039882 GGAAGACTAGAAAAATGACACGGATA 58.960 38.462 0.00 0.00 0.00 2.59
1488 1511 7.222999 GGAAGACTAGAAAAATGACACGGATAG 59.777 40.741 0.00 0.00 0.00 2.08
1489 1512 6.574350 AGACTAGAAAAATGACACGGATAGG 58.426 40.000 0.00 0.00 0.00 2.57
1490 1513 6.154706 AGACTAGAAAAATGACACGGATAGGT 59.845 38.462 0.00 0.00 0.00 3.08
1491 1514 6.338937 ACTAGAAAAATGACACGGATAGGTC 58.661 40.000 0.00 0.00 34.63 3.85
1492 1515 5.160607 AGAAAAATGACACGGATAGGTCA 57.839 39.130 0.00 0.00 46.92 4.02
1493 1516 5.178797 AGAAAAATGACACGGATAGGTCAG 58.821 41.667 0.00 0.00 46.17 3.51
1494 1517 3.543680 AAATGACACGGATAGGTCAGG 57.456 47.619 0.00 0.00 46.17 3.86
1495 1518 1.414158 ATGACACGGATAGGTCAGGG 58.586 55.000 0.00 0.00 46.17 4.45
1496 1519 0.686441 TGACACGGATAGGTCAGGGG 60.686 60.000 0.00 0.00 39.00 4.79
1497 1520 2.029307 GACACGGATAGGTCAGGGGC 62.029 65.000 0.00 0.00 34.22 5.80
1498 1521 2.838225 ACGGATAGGTCAGGGGCG 60.838 66.667 0.00 0.00 0.00 6.13
1499 1522 2.520982 CGGATAGGTCAGGGGCGA 60.521 66.667 0.00 0.00 0.00 5.54
1500 1523 2.131709 CGGATAGGTCAGGGGCGAA 61.132 63.158 0.00 0.00 0.00 4.70
1501 1524 1.682451 CGGATAGGTCAGGGGCGAAA 61.682 60.000 0.00 0.00 0.00 3.46
1502 1525 0.765510 GGATAGGTCAGGGGCGAAAT 59.234 55.000 0.00 0.00 0.00 2.17
1503 1526 1.975680 GGATAGGTCAGGGGCGAAATA 59.024 52.381 0.00 0.00 0.00 1.40
1504 1527 2.370849 GGATAGGTCAGGGGCGAAATAA 59.629 50.000 0.00 0.00 0.00 1.40
1505 1528 3.557264 GGATAGGTCAGGGGCGAAATAAG 60.557 52.174 0.00 0.00 0.00 1.73
1506 1529 0.107165 AGGTCAGGGGCGAAATAAGC 60.107 55.000 0.00 0.00 0.00 3.09
1507 1530 0.393808 GGTCAGGGGCGAAATAAGCA 60.394 55.000 0.00 0.00 36.08 3.91
1508 1531 1.680338 GTCAGGGGCGAAATAAGCAT 58.320 50.000 0.00 0.00 36.08 3.79
1509 1532 2.024414 GTCAGGGGCGAAATAAGCATT 58.976 47.619 0.00 0.00 36.08 3.56
1510 1533 2.427095 GTCAGGGGCGAAATAAGCATTT 59.573 45.455 0.00 0.00 37.06 2.32
1511 1534 3.096092 TCAGGGGCGAAATAAGCATTTT 58.904 40.909 0.00 0.00 34.44 1.82
1512 1535 4.097286 GTCAGGGGCGAAATAAGCATTTTA 59.903 41.667 0.00 0.00 34.44 1.52
1513 1536 4.892934 TCAGGGGCGAAATAAGCATTTTAT 59.107 37.500 0.00 0.00 34.44 1.40
1514 1537 4.984161 CAGGGGCGAAATAAGCATTTTATG 59.016 41.667 0.00 0.00 34.44 1.90
1547 1570 1.819632 AACATTCCGCGGATCTGCC 60.820 57.895 31.56 3.52 0.00 4.85
1560 1583 3.332919 GGATCTGCCTATACTGCACATG 58.667 50.000 0.00 0.00 34.46 3.21
1597 1621 6.314784 GTTGCATTTGTTATAGTGAGGTGTC 58.685 40.000 0.00 0.00 0.00 3.67
1622 1646 4.340950 TCATCTGGCGAGTGATGTATTGTA 59.659 41.667 0.00 0.00 40.46 2.41
1654 1678 7.759489 TTGTGCTATGTTACATTCCTCTTTT 57.241 32.000 2.23 0.00 0.00 2.27
1888 2015 1.133823 TGGCATACCAAATGCGAGGAT 60.134 47.619 4.06 0.00 45.37 3.24
1908 2035 6.245408 AGGATTACCAATGTGAAAAGCTACA 58.755 36.000 0.00 0.00 38.94 2.74
1922 2049 5.399604 AAAGCTACACAAACTCGTAACAC 57.600 39.130 0.00 0.00 0.00 3.32
2045 2172 3.002862 GCGTGTTACACCAAGATGTTCAA 59.997 43.478 10.10 0.00 33.85 2.69
2065 2210 8.143193 TGTTCAATTTGTGAGCATCTATTGTTT 58.857 29.630 0.00 0.00 41.99 2.83
2650 2798 7.359595 TGAACTTTATTCAAACAGACAATCGG 58.640 34.615 0.00 0.00 0.00 4.18
3007 3332 1.760613 TCCAGACACCGTGAGTCTTTT 59.239 47.619 5.28 0.00 43.47 2.27
3075 3400 5.195185 TGATGCATTCACACTATCCATGTT 58.805 37.500 0.00 0.00 0.00 2.71
3234 3559 5.745312 AGTCACCAGTCATCAGTAAATGA 57.255 39.130 0.00 0.00 43.70 2.57
3538 3869 6.104146 TGCATCTTGTGTACAGTTAACCTA 57.896 37.500 0.88 0.00 0.00 3.08
3822 4165 1.160329 AGCGTGTTTCAGTGGAGCAC 61.160 55.000 8.30 8.30 34.10 4.40
3933 4276 3.499918 GTGTATCATGCCCATACTGCTTC 59.500 47.826 5.06 0.00 0.00 3.86
3938 4281 0.543277 TGCCCATACTGCTTCTCCAG 59.457 55.000 0.00 0.00 38.78 3.86
4089 4432 4.081030 CAGCCGCGCAACTCAGTG 62.081 66.667 8.75 0.00 0.00 3.66
4091 4434 4.374702 GCCGCGCAACTCAGTGTG 62.375 66.667 8.75 0.00 0.00 3.82
4094 4437 2.939022 GCGCAACTCAGTGTGACC 59.061 61.111 0.30 0.00 0.00 4.02
4108 4451 4.214119 CAGTGTGACCTAAACTGGTGATTG 59.786 45.833 0.00 0.00 41.00 2.67
4109 4452 4.134563 GTGTGACCTAAACTGGTGATTGT 58.865 43.478 0.00 0.00 41.00 2.71
4110 4453 5.071250 AGTGTGACCTAAACTGGTGATTGTA 59.929 40.000 0.00 0.00 41.00 2.41
4111 4454 5.178809 GTGTGACCTAAACTGGTGATTGTAC 59.821 44.000 0.00 0.00 41.00 2.90
4112 4455 5.071250 TGTGACCTAAACTGGTGATTGTACT 59.929 40.000 0.00 0.00 41.00 2.73
4154 4505 6.909357 GGATTATTGAAATGCTCTCGACAAAG 59.091 38.462 0.00 0.00 0.00 2.77
4155 4506 6.801539 TTATTGAAATGCTCTCGACAAAGT 57.198 33.333 0.00 0.00 0.00 2.66
4156 4507 4.472691 TTGAAATGCTCTCGACAAAGTG 57.527 40.909 0.00 0.00 0.00 3.16
4158 4509 3.742882 TGAAATGCTCTCGACAAAGTGAG 59.257 43.478 0.00 0.00 35.52 3.51
4159 4510 3.667497 AATGCTCTCGACAAAGTGAGA 57.333 42.857 1.60 0.00 38.85 3.27
4160 4511 3.883830 ATGCTCTCGACAAAGTGAGAT 57.116 42.857 1.60 0.00 40.27 2.75
4162 4513 2.094494 TGCTCTCGACAAAGTGAGATCC 60.094 50.000 1.60 0.00 40.27 3.36
4163 4514 2.165437 GCTCTCGACAAAGTGAGATCCT 59.835 50.000 1.60 0.00 40.27 3.24
4165 4516 4.815269 CTCTCGACAAAGTGAGATCCTTT 58.185 43.478 0.00 0.00 40.27 3.11
4166 4517 5.215252 TCTCGACAAAGTGAGATCCTTTT 57.785 39.130 0.00 0.00 36.36 2.27
4167 4518 4.991056 TCTCGACAAAGTGAGATCCTTTTG 59.009 41.667 0.00 0.00 36.36 2.44
4168 4519 4.065088 TCGACAAAGTGAGATCCTTTTGG 58.935 43.478 11.23 0.00 42.21 3.28
4203 4554 2.284190 GTCTGGCTACTTTGATCAGGC 58.716 52.381 0.00 0.00 35.54 4.85
4294 4645 4.519350 AGCTTAGAAGTTTGTTTACAGGGC 59.481 41.667 0.00 0.00 0.00 5.19
4336 4687 8.836413 CCATCTATCCGTAAATTGTAACATTGT 58.164 33.333 0.00 0.00 0.00 2.71
4402 4753 1.584495 GTGCAAAACACGGATCCCC 59.416 57.895 6.06 0.00 40.07 4.81
4418 4769 1.679898 CCCGGACCTGAAGCTTCTT 59.320 57.895 26.09 11.32 0.00 2.52
4438 4789 7.361201 GCTTCTTGCAGTCTGTTTATGTATGAA 60.361 37.037 0.93 0.00 42.31 2.57
4445 4796 7.275183 CAGTCTGTTTATGTATGAAGATGGGA 58.725 38.462 0.00 0.00 0.00 4.37
4450 4801 8.033178 TGTTTATGTATGAAGATGGGATCAGA 57.967 34.615 0.00 0.00 0.00 3.27
4472 4823 1.205417 CCCAAATGGTGTCATTCCTGC 59.795 52.381 0.00 0.00 42.29 4.85
4483 4834 3.067106 GTCATTCCTGCTTGAACGAGAA 58.933 45.455 0.00 0.00 0.00 2.87
4541 4892 4.685924 CTGGTTGTTCTGAACATTGCTTT 58.314 39.130 22.60 0.00 41.79 3.51
4596 4947 6.385649 TTGATTTGCTAGTTTCGTTTCCTT 57.614 33.333 0.00 0.00 0.00 3.36
4597 4948 7.499321 TTGATTTGCTAGTTTCGTTTCCTTA 57.501 32.000 0.00 0.00 0.00 2.69
4599 4950 8.106247 TGATTTGCTAGTTTCGTTTCCTTAAT 57.894 30.769 0.00 0.00 0.00 1.40
4601 4952 9.486857 GATTTGCTAGTTTCGTTTCCTTAATAC 57.513 33.333 0.00 0.00 0.00 1.89
4602 4953 8.611654 TTTGCTAGTTTCGTTTCCTTAATACT 57.388 30.769 0.00 0.00 0.00 2.12
4606 5003 6.250344 AGTTTCGTTTCCTTAATACTTGCC 57.750 37.500 0.00 0.00 0.00 4.52
4609 5006 3.680937 TCGTTTCCTTAATACTTGCCGTG 59.319 43.478 0.00 0.00 0.00 4.94
4611 5008 2.702592 TCCTTAATACTTGCCGTGGG 57.297 50.000 0.00 0.00 0.00 4.61
4638 5035 8.035984 TCAAAATGATGTTGATACATGTGCATT 58.964 29.630 9.11 3.03 44.90 3.56
4660 5057 0.790207 AACTGCATCGTACTTGCACG 59.210 50.000 14.25 12.77 44.73 5.34
4662 5059 2.296692 CTGCATCGTACTTGCACGGC 62.297 60.000 14.25 0.00 44.73 5.68
4669 5066 1.005037 TACTTGCACGGCTCAGTGG 60.005 57.895 8.94 0.00 42.09 4.00
4691 5088 5.065474 TGGAACTACAAACTTTTCTTGTCGG 59.935 40.000 0.00 0.00 38.05 4.79
4713 5110 0.326238 AGTGAATTAGCTCCCGGGGA 60.326 55.000 23.50 16.55 0.00 4.81
4721 5118 2.427753 CTCCCGGGGATGCTTAGC 59.572 66.667 23.50 0.00 0.00 3.09
4730 5127 0.510359 GGATGCTTAGCGCTCATTCG 59.490 55.000 16.34 0.00 40.11 3.34
4732 5129 0.104855 ATGCTTAGCGCTCATTCGGA 59.895 50.000 16.34 0.00 40.11 4.55
4733 5130 0.108377 TGCTTAGCGCTCATTCGGAA 60.108 50.000 16.34 0.00 40.11 4.30
4734 5131 0.579156 GCTTAGCGCTCATTCGGAAG 59.421 55.000 16.34 11.71 35.14 3.46
4735 5132 1.927895 CTTAGCGCTCATTCGGAAGT 58.072 50.000 16.34 0.00 0.00 3.01
4736 5133 2.798499 GCTTAGCGCTCATTCGGAAGTA 60.798 50.000 16.34 0.00 35.14 2.24
4775 5243 2.957402 TCTGAATGCCCTGTTCACTT 57.043 45.000 0.00 0.00 32.55 3.16
4787 5255 5.560724 CCCTGTTCACTTCAATCCTTAGAA 58.439 41.667 0.00 0.00 0.00 2.10
4811 5279 4.604843 TTTTCACGAGATCACATGATGC 57.395 40.909 0.00 0.00 34.37 3.91
4812 5280 3.531934 TTCACGAGATCACATGATGCT 57.468 42.857 0.00 0.00 34.37 3.79
4858 5326 6.095300 CCAATGTGGACAGCTTGAATACAATA 59.905 38.462 0.00 0.00 40.96 1.90
5046 5518 2.224549 TGGCGGATTTACAAAACAGACG 59.775 45.455 0.00 0.00 0.00 4.18
5049 5521 3.059461 GCGGATTTACAAAACAGACGTGA 60.059 43.478 0.00 0.00 0.00 4.35
5050 5522 4.378046 GCGGATTTACAAAACAGACGTGAT 60.378 41.667 0.00 0.00 0.00 3.06
5051 5523 5.079406 CGGATTTACAAAACAGACGTGATG 58.921 41.667 0.00 0.00 0.00 3.07
5052 5524 5.390613 GGATTTACAAAACAGACGTGATGG 58.609 41.667 0.00 0.00 0.00 3.51
5053 5525 3.889196 TTACAAAACAGACGTGATGGC 57.111 42.857 0.00 0.00 0.00 4.40
5054 5526 0.951558 ACAAAACAGACGTGATGGCC 59.048 50.000 0.00 0.00 0.00 5.36
5055 5527 0.110238 CAAAACAGACGTGATGGCCG 60.110 55.000 0.00 0.00 0.00 6.13
5056 5528 0.534203 AAAACAGACGTGATGGCCGT 60.534 50.000 0.00 0.00 42.06 5.68
5061 5533 2.048222 ACGTGATGGCCGTCTGTG 60.048 61.111 25.20 16.43 31.97 3.66
5062 5534 3.490759 CGTGATGGCCGTCTGTGC 61.491 66.667 25.20 11.83 0.00 4.57
5063 5535 3.490759 GTGATGGCCGTCTGTGCG 61.491 66.667 25.20 0.00 0.00 5.34
5064 5536 3.690280 TGATGGCCGTCTGTGCGA 61.690 61.111 25.20 1.09 0.00 5.10
5065 5537 2.434185 GATGGCCGTCTGTGCGAA 60.434 61.111 18.25 0.00 0.00 4.70
5066 5538 2.031919 ATGGCCGTCTGTGCGAAA 59.968 55.556 0.00 0.00 0.00 3.46
5067 5539 1.573829 GATGGCCGTCTGTGCGAAAA 61.574 55.000 18.25 0.00 0.00 2.29
5068 5540 1.169661 ATGGCCGTCTGTGCGAAAAA 61.170 50.000 0.00 0.00 0.00 1.94
5069 5541 1.169661 TGGCCGTCTGTGCGAAAAAT 61.170 50.000 0.00 0.00 0.00 1.82
5070 5542 0.039527 GGCCGTCTGTGCGAAAAATT 60.040 50.000 0.00 0.00 0.00 1.82
5071 5543 1.052287 GCCGTCTGTGCGAAAAATTG 58.948 50.000 0.00 0.00 0.00 2.32
5072 5544 1.685302 CCGTCTGTGCGAAAAATTGG 58.315 50.000 0.00 0.00 0.00 3.16
5073 5545 1.265635 CCGTCTGTGCGAAAAATTGGA 59.734 47.619 0.00 0.00 0.00 3.53
5074 5546 2.307049 CGTCTGTGCGAAAAATTGGAC 58.693 47.619 0.00 0.00 0.00 4.02
5075 5547 2.032030 CGTCTGTGCGAAAAATTGGACT 60.032 45.455 0.00 0.00 0.00 3.85
5076 5548 3.555518 GTCTGTGCGAAAAATTGGACTC 58.444 45.455 0.00 0.00 0.00 3.36
5077 5549 3.003275 GTCTGTGCGAAAAATTGGACTCA 59.997 43.478 0.00 0.00 0.00 3.41
5078 5550 3.820467 TCTGTGCGAAAAATTGGACTCAT 59.180 39.130 0.00 0.00 0.00 2.90
5079 5551 5.000591 TCTGTGCGAAAAATTGGACTCATA 58.999 37.500 0.00 0.00 0.00 2.15
5080 5552 5.122239 TCTGTGCGAAAAATTGGACTCATAG 59.878 40.000 0.00 0.00 0.00 2.23
5081 5553 4.155826 TGTGCGAAAAATTGGACTCATAGG 59.844 41.667 0.00 0.00 0.00 2.57
5082 5554 4.156008 GTGCGAAAAATTGGACTCATAGGT 59.844 41.667 0.00 0.00 0.00 3.08
5083 5555 4.394920 TGCGAAAAATTGGACTCATAGGTC 59.605 41.667 0.00 0.00 35.66 3.85
5084 5556 4.394920 GCGAAAAATTGGACTCATAGGTCA 59.605 41.667 0.00 0.00 37.91 4.02
5085 5557 5.066505 GCGAAAAATTGGACTCATAGGTCAT 59.933 40.000 0.00 0.00 37.91 3.06
5086 5558 6.260050 GCGAAAAATTGGACTCATAGGTCATA 59.740 38.462 0.00 0.00 37.91 2.15
5087 5559 7.519008 GCGAAAAATTGGACTCATAGGTCATAG 60.519 40.741 0.00 0.00 37.91 2.23
5088 5560 7.519008 CGAAAAATTGGACTCATAGGTCATAGC 60.519 40.741 0.00 0.00 37.91 2.97
5089 5561 6.506538 AAATTGGACTCATAGGTCATAGCT 57.493 37.500 0.00 0.00 37.91 3.32
5090 5562 7.618019 AAATTGGACTCATAGGTCATAGCTA 57.382 36.000 0.00 0.00 37.91 3.32
5091 5563 6.849085 ATTGGACTCATAGGTCATAGCTAG 57.151 41.667 0.00 0.00 37.91 3.42
5092 5564 5.326283 TGGACTCATAGGTCATAGCTAGT 57.674 43.478 0.00 0.00 37.91 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.810310 TGGCCGTGTCTTCAAATTTTT 57.190 38.095 0.00 0.00 0.00 1.94
6 7 4.335400 AATGGCCGTGTCTTCAAATTTT 57.665 36.364 0.00 0.00 0.00 1.82
7 8 4.335400 AAATGGCCGTGTCTTCAAATTT 57.665 36.364 0.00 0.00 0.00 1.82
8 9 4.335400 AAAATGGCCGTGTCTTCAAATT 57.665 36.364 0.00 0.00 0.00 1.82
9 10 4.335400 AAAAATGGCCGTGTCTTCAAAT 57.665 36.364 0.00 0.00 0.00 2.32
10 11 3.810310 AAAAATGGCCGTGTCTTCAAA 57.190 38.095 0.00 0.00 0.00 2.69
130 131 8.494347 CCATTTTAAAAGTCATTCGCAATTTGA 58.506 29.630 6.79 0.00 0.00 2.69
131 132 8.281893 ACCATTTTAAAAGTCATTCGCAATTTG 58.718 29.630 6.79 0.00 0.00 2.32
132 133 8.281893 CACCATTTTAAAAGTCATTCGCAATTT 58.718 29.630 6.79 0.00 0.00 1.82
133 134 7.655328 TCACCATTTTAAAAGTCATTCGCAATT 59.345 29.630 6.79 0.00 0.00 2.32
134 135 7.151308 TCACCATTTTAAAAGTCATTCGCAAT 58.849 30.769 6.79 0.00 0.00 3.56
135 136 6.507900 TCACCATTTTAAAAGTCATTCGCAA 58.492 32.000 6.79 0.00 0.00 4.85
136 137 6.078202 TCACCATTTTAAAAGTCATTCGCA 57.922 33.333 6.79 0.00 0.00 5.10
137 138 6.419413 TGTTCACCATTTTAAAAGTCATTCGC 59.581 34.615 6.79 0.00 0.00 4.70
138 139 7.922505 TGTTCACCATTTTAAAAGTCATTCG 57.077 32.000 6.79 0.00 0.00 3.34
181 182 9.967245 GGATTTTCAAAAATTATTCGCTAAACC 57.033 29.630 2.46 0.00 38.64 3.27
186 187 9.050601 TGTTTGGATTTTCAAAAATTATTCGCT 57.949 25.926 2.46 0.00 38.64 4.93
187 188 9.657121 TTGTTTGGATTTTCAAAAATTATTCGC 57.343 25.926 2.46 0.00 38.64 4.70
360 361 9.691362 GCATTCTCCTATTTGTTTTCTTTACAA 57.309 29.630 0.00 0.00 33.92 2.41
361 362 9.077885 AGCATTCTCCTATTTGTTTTCTTTACA 57.922 29.630 0.00 0.00 0.00 2.41
362 363 9.561270 GAGCATTCTCCTATTTGTTTTCTTTAC 57.439 33.333 0.00 0.00 33.19 2.01
379 380 1.272147 ACTGGTTTGGGGAGCATTCTC 60.272 52.381 0.00 0.00 38.62 2.87
380 381 0.779997 ACTGGTTTGGGGAGCATTCT 59.220 50.000 0.00 0.00 0.00 2.40
381 382 2.507407 TACTGGTTTGGGGAGCATTC 57.493 50.000 0.00 0.00 0.00 2.67
382 383 2.897326 GTTTACTGGTTTGGGGAGCATT 59.103 45.455 0.00 0.00 0.00 3.56
383 384 2.525368 GTTTACTGGTTTGGGGAGCAT 58.475 47.619 0.00 0.00 0.00 3.79
384 385 1.479757 GGTTTACTGGTTTGGGGAGCA 60.480 52.381 0.00 0.00 0.00 4.26
385 386 1.203013 AGGTTTACTGGTTTGGGGAGC 60.203 52.381 0.00 0.00 0.00 4.70
386 387 2.791655 GAGGTTTACTGGTTTGGGGAG 58.208 52.381 0.00 0.00 0.00 4.30
387 388 1.072648 CGAGGTTTACTGGTTTGGGGA 59.927 52.381 0.00 0.00 0.00 4.81
388 389 1.530323 CGAGGTTTACTGGTTTGGGG 58.470 55.000 0.00 0.00 0.00 4.96
389 390 1.530323 CCGAGGTTTACTGGTTTGGG 58.470 55.000 0.00 0.00 0.00 4.12
390 391 1.202842 ACCCGAGGTTTACTGGTTTGG 60.203 52.381 0.00 0.00 27.29 3.28
391 392 2.265589 ACCCGAGGTTTACTGGTTTG 57.734 50.000 0.00 0.00 27.29 2.93
392 393 3.242011 TCTACCCGAGGTTTACTGGTTT 58.758 45.455 0.72 0.00 37.09 3.27
393 394 2.893424 TCTACCCGAGGTTTACTGGTT 58.107 47.619 0.72 0.00 37.09 3.67
394 395 2.610438 TCTACCCGAGGTTTACTGGT 57.390 50.000 0.72 0.00 37.09 4.00
395 396 2.167900 CCTTCTACCCGAGGTTTACTGG 59.832 54.545 0.72 0.00 37.09 4.00
396 397 2.830321 ACCTTCTACCCGAGGTTTACTG 59.170 50.000 0.72 0.00 37.09 2.74
397 398 3.095332 GACCTTCTACCCGAGGTTTACT 58.905 50.000 0.72 0.00 37.09 2.24
398 399 3.095332 AGACCTTCTACCCGAGGTTTAC 58.905 50.000 0.72 0.00 37.09 2.01
399 400 3.463048 AGACCTTCTACCCGAGGTTTA 57.537 47.619 0.72 0.00 37.09 2.01
400 401 2.302157 CAAGACCTTCTACCCGAGGTTT 59.698 50.000 0.72 0.00 37.09 3.27
401 402 1.900486 CAAGACCTTCTACCCGAGGTT 59.100 52.381 0.72 0.00 37.09 3.50
402 403 1.558233 CAAGACCTTCTACCCGAGGT 58.442 55.000 0.00 0.00 40.16 3.85
403 404 0.175989 GCAAGACCTTCTACCCGAGG 59.824 60.000 0.00 0.00 0.00 4.63
404 405 1.187087 AGCAAGACCTTCTACCCGAG 58.813 55.000 0.00 0.00 0.00 4.63
405 406 2.519771 TAGCAAGACCTTCTACCCGA 57.480 50.000 0.00 0.00 0.00 5.14
406 407 4.767928 AGATATAGCAAGACCTTCTACCCG 59.232 45.833 0.00 0.00 0.00 5.28
407 408 6.014012 AGAGATATAGCAAGACCTTCTACCC 58.986 44.000 0.00 0.00 0.00 3.69
408 409 6.492087 ACAGAGATATAGCAAGACCTTCTACC 59.508 42.308 0.00 0.00 0.00 3.18
409 410 7.367285 CACAGAGATATAGCAAGACCTTCTAC 58.633 42.308 0.00 0.00 0.00 2.59
410 411 6.015856 GCACAGAGATATAGCAAGACCTTCTA 60.016 42.308 0.00 0.00 0.00 2.10
411 412 5.221422 GCACAGAGATATAGCAAGACCTTCT 60.221 44.000 0.00 0.00 0.00 2.85
412 413 4.987912 GCACAGAGATATAGCAAGACCTTC 59.012 45.833 0.00 0.00 0.00 3.46
413 414 4.406972 TGCACAGAGATATAGCAAGACCTT 59.593 41.667 0.00 0.00 31.42 3.50
414 415 3.963374 TGCACAGAGATATAGCAAGACCT 59.037 43.478 0.00 0.00 31.42 3.85
415 416 4.327982 TGCACAGAGATATAGCAAGACC 57.672 45.455 0.00 0.00 31.42 3.85
416 417 6.806249 GTCTATGCACAGAGATATAGCAAGAC 59.194 42.308 0.00 0.00 38.85 3.01
417 418 6.718912 AGTCTATGCACAGAGATATAGCAAGA 59.281 38.462 0.00 0.00 38.85 3.02
418 419 6.923012 AGTCTATGCACAGAGATATAGCAAG 58.077 40.000 0.00 0.00 38.85 4.01
419 420 6.348868 CGAGTCTATGCACAGAGATATAGCAA 60.349 42.308 0.00 0.00 38.85 3.91
420 421 5.123027 CGAGTCTATGCACAGAGATATAGCA 59.877 44.000 0.00 0.00 39.79 3.49
421 422 5.352846 TCGAGTCTATGCACAGAGATATAGC 59.647 44.000 0.00 0.00 30.72 2.97
422 423 6.370166 TGTCGAGTCTATGCACAGAGATATAG 59.630 42.308 0.00 0.00 30.72 1.31
423 424 6.147985 GTGTCGAGTCTATGCACAGAGATATA 59.852 42.308 0.00 0.00 30.72 0.86
424 425 5.049060 GTGTCGAGTCTATGCACAGAGATAT 60.049 44.000 0.00 0.00 30.72 1.63
425 426 4.273724 GTGTCGAGTCTATGCACAGAGATA 59.726 45.833 0.00 0.00 30.72 1.98
426 427 3.066064 GTGTCGAGTCTATGCACAGAGAT 59.934 47.826 0.00 0.00 30.72 2.75
427 428 2.420372 GTGTCGAGTCTATGCACAGAGA 59.580 50.000 0.00 0.00 0.00 3.10
428 429 2.421775 AGTGTCGAGTCTATGCACAGAG 59.578 50.000 0.00 0.00 32.99 3.35
429 430 2.437413 AGTGTCGAGTCTATGCACAGA 58.563 47.619 0.00 0.00 32.99 3.41
430 431 2.929531 AGTGTCGAGTCTATGCACAG 57.070 50.000 0.00 0.00 32.99 3.66
431 432 3.217599 GAAGTGTCGAGTCTATGCACA 57.782 47.619 0.00 0.00 32.99 4.57
444 445 1.421485 CATTCTGCGGCGAAGTGTC 59.579 57.895 15.80 0.00 0.00 3.67
445 446 2.680913 GCATTCTGCGGCGAAGTGT 61.681 57.895 15.80 1.56 31.71 3.55
446 447 2.099062 GCATTCTGCGGCGAAGTG 59.901 61.111 15.80 8.01 31.71 3.16
455 456 2.169832 TCCTATTAGCCGCATTCTGC 57.830 50.000 0.00 0.00 40.69 4.26
456 457 4.143030 CGATTTCCTATTAGCCGCATTCTG 60.143 45.833 0.00 0.00 0.00 3.02
457 458 3.997021 CGATTTCCTATTAGCCGCATTCT 59.003 43.478 0.00 0.00 0.00 2.40
458 459 3.125316 CCGATTTCCTATTAGCCGCATTC 59.875 47.826 0.00 0.00 0.00 2.67
459 460 3.074412 CCGATTTCCTATTAGCCGCATT 58.926 45.455 0.00 0.00 0.00 3.56
460 461 2.699954 CCGATTTCCTATTAGCCGCAT 58.300 47.619 0.00 0.00 0.00 4.73
461 462 1.876416 GCCGATTTCCTATTAGCCGCA 60.876 52.381 0.00 0.00 0.00 5.69
462 463 0.796927 GCCGATTTCCTATTAGCCGC 59.203 55.000 0.00 0.00 0.00 6.53
463 464 2.163818 TGCCGATTTCCTATTAGCCG 57.836 50.000 0.00 0.00 0.00 5.52
464 465 4.321230 CCAATTGCCGATTTCCTATTAGCC 60.321 45.833 0.00 0.00 0.00 3.93
465 466 4.278419 ACCAATTGCCGATTTCCTATTAGC 59.722 41.667 0.00 0.00 0.00 3.09
466 467 7.687941 ATACCAATTGCCGATTTCCTATTAG 57.312 36.000 0.00 0.00 0.00 1.73
467 468 8.356657 CAAATACCAATTGCCGATTTCCTATTA 58.643 33.333 0.00 0.00 0.00 0.98
468 469 6.976934 AATACCAATTGCCGATTTCCTATT 57.023 33.333 0.00 0.00 0.00 1.73
469 470 6.738453 GCAAATACCAATTGCCGATTTCCTAT 60.738 38.462 0.00 0.00 45.73 2.57
470 471 5.451242 GCAAATACCAATTGCCGATTTCCTA 60.451 40.000 0.00 0.00 45.73 2.94
471 472 4.680440 GCAAATACCAATTGCCGATTTCCT 60.680 41.667 0.00 0.00 45.73 3.36
472 473 3.555547 GCAAATACCAATTGCCGATTTCC 59.444 43.478 0.00 0.00 45.73 3.13
473 474 4.777140 GCAAATACCAATTGCCGATTTC 57.223 40.909 0.00 0.00 45.73 2.17
481 482 3.552699 CGGAATGCAGCAAATACCAATTG 59.447 43.478 0.00 0.00 0.00 2.32
482 483 3.430651 CCGGAATGCAGCAAATACCAATT 60.431 43.478 0.00 0.00 0.00 2.32
483 484 2.101249 CCGGAATGCAGCAAATACCAAT 59.899 45.455 0.00 0.00 0.00 3.16
484 485 1.476085 CCGGAATGCAGCAAATACCAA 59.524 47.619 0.00 0.00 0.00 3.67
485 486 1.102154 CCGGAATGCAGCAAATACCA 58.898 50.000 0.00 0.00 0.00 3.25
486 487 0.249031 GCCGGAATGCAGCAAATACC 60.249 55.000 5.05 0.00 0.00 2.73
487 488 0.592247 CGCCGGAATGCAGCAAATAC 60.592 55.000 5.05 0.00 0.00 1.89
488 489 0.746204 TCGCCGGAATGCAGCAAATA 60.746 50.000 5.05 0.00 0.00 1.40
489 490 1.594194 TTCGCCGGAATGCAGCAAAT 61.594 50.000 5.05 0.00 0.00 2.32
490 491 1.594194 ATTCGCCGGAATGCAGCAAA 61.594 50.000 5.05 0.00 41.29 3.68
491 492 0.746204 TATTCGCCGGAATGCAGCAA 60.746 50.000 5.05 0.00 42.72 3.91
492 493 0.746204 TTATTCGCCGGAATGCAGCA 60.746 50.000 5.05 0.00 42.72 4.41
493 494 0.593128 ATTATTCGCCGGAATGCAGC 59.407 50.000 5.05 0.00 42.72 5.25
494 495 1.872952 TGATTATTCGCCGGAATGCAG 59.127 47.619 5.05 0.00 42.72 4.41
495 496 1.601903 GTGATTATTCGCCGGAATGCA 59.398 47.619 5.05 0.00 42.72 3.96
496 497 1.873591 AGTGATTATTCGCCGGAATGC 59.126 47.619 5.05 0.00 42.72 3.56
497 498 3.130633 TCAGTGATTATTCGCCGGAATG 58.869 45.455 5.05 0.00 42.72 2.67
498 499 3.469008 TCAGTGATTATTCGCCGGAAT 57.531 42.857 5.05 0.00 44.81 3.01
499 500 2.971660 TCAGTGATTATTCGCCGGAA 57.028 45.000 5.05 0.00 36.41 4.30
500 501 3.390135 GAATCAGTGATTATTCGCCGGA 58.610 45.455 18.28 0.00 31.89 5.14
501 502 2.155732 CGAATCAGTGATTATTCGCCGG 59.844 50.000 18.28 0.00 45.33 6.13
502 503 3.424430 CGAATCAGTGATTATTCGCCG 57.576 47.619 18.28 12.29 45.33 6.46
506 507 6.929049 TCCCATGTACGAATCAGTGATTATTC 59.071 38.462 18.28 6.62 31.89 1.75
507 508 6.826668 TCCCATGTACGAATCAGTGATTATT 58.173 36.000 18.28 10.54 31.89 1.40
508 509 6.419484 TCCCATGTACGAATCAGTGATTAT 57.581 37.500 18.28 11.99 31.89 1.28
509 510 5.862678 TCCCATGTACGAATCAGTGATTA 57.137 39.130 18.28 3.06 31.89 1.75
510 511 4.753516 TCCCATGTACGAATCAGTGATT 57.246 40.909 18.31 18.31 34.71 2.57
511 512 4.081142 TGTTCCCATGTACGAATCAGTGAT 60.081 41.667 0.00 0.00 0.00 3.06
512 513 3.259625 TGTTCCCATGTACGAATCAGTGA 59.740 43.478 0.00 0.00 0.00 3.41
513 514 3.595173 TGTTCCCATGTACGAATCAGTG 58.405 45.455 0.00 0.00 0.00 3.66
514 515 3.973206 TGTTCCCATGTACGAATCAGT 57.027 42.857 0.00 0.00 0.00 3.41
515 516 4.449068 GCTATGTTCCCATGTACGAATCAG 59.551 45.833 0.00 0.00 32.29 2.90
516 517 4.377021 GCTATGTTCCCATGTACGAATCA 58.623 43.478 0.00 0.00 32.29 2.57
517 518 3.428870 CGCTATGTTCCCATGTACGAATC 59.571 47.826 0.00 0.00 32.29 2.52
518 519 3.390135 CGCTATGTTCCCATGTACGAAT 58.610 45.455 0.00 0.00 32.29 3.34
519 520 2.816689 CGCTATGTTCCCATGTACGAA 58.183 47.619 0.00 0.00 32.29 3.85
520 521 1.537348 GCGCTATGTTCCCATGTACGA 60.537 52.381 0.00 0.00 32.29 3.43
521 522 0.859232 GCGCTATGTTCCCATGTACG 59.141 55.000 0.00 0.00 32.29 3.67
522 523 1.597663 GTGCGCTATGTTCCCATGTAC 59.402 52.381 9.73 0.00 32.29 2.90
523 524 1.208293 TGTGCGCTATGTTCCCATGTA 59.792 47.619 9.73 0.00 32.29 2.29
524 525 0.035534 TGTGCGCTATGTTCCCATGT 60.036 50.000 9.73 0.00 32.29 3.21
525 526 0.378257 GTGTGCGCTATGTTCCCATG 59.622 55.000 9.73 0.00 32.29 3.66
526 527 1.089481 CGTGTGCGCTATGTTCCCAT 61.089 55.000 9.73 0.00 34.97 4.00
527 528 1.739929 CGTGTGCGCTATGTTCCCA 60.740 57.895 9.73 0.00 0.00 4.37
528 529 1.296056 AACGTGTGCGCTATGTTCCC 61.296 55.000 9.73 0.00 42.83 3.97
529 530 0.515564 AAACGTGTGCGCTATGTTCC 59.484 50.000 18.47 0.00 42.83 3.62
530 531 3.120786 AGTTAAACGTGTGCGCTATGTTC 60.121 43.478 18.47 9.84 42.83 3.18
531 532 2.803956 AGTTAAACGTGTGCGCTATGTT 59.196 40.909 9.73 12.68 42.83 2.71
532 533 2.156891 CAGTTAAACGTGTGCGCTATGT 59.843 45.455 9.73 6.61 42.83 2.29
533 534 2.473868 CCAGTTAAACGTGTGCGCTATG 60.474 50.000 9.73 5.90 42.83 2.23
534 535 1.730064 CCAGTTAAACGTGTGCGCTAT 59.270 47.619 9.73 0.00 42.83 2.97
535 536 1.141645 CCAGTTAAACGTGTGCGCTA 58.858 50.000 9.73 0.00 42.83 4.26
536 537 1.503818 CCCAGTTAAACGTGTGCGCT 61.504 55.000 9.73 0.00 42.83 5.92
537 538 1.082366 CCCAGTTAAACGTGTGCGC 60.082 57.895 0.00 0.00 42.83 6.09
538 539 1.082366 GCCCAGTTAAACGTGTGCG 60.082 57.895 0.00 0.00 44.93 5.34
539 540 0.040425 CAGCCCAGTTAAACGTGTGC 60.040 55.000 0.00 0.00 0.00 4.57
540 541 0.591170 CCAGCCCAGTTAAACGTGTG 59.409 55.000 0.00 0.00 0.00 3.82
541 542 1.170290 GCCAGCCCAGTTAAACGTGT 61.170 55.000 0.00 0.00 0.00 4.49
542 543 1.579429 GCCAGCCCAGTTAAACGTG 59.421 57.895 0.00 0.00 0.00 4.49
543 544 1.602605 GGCCAGCCCAGTTAAACGT 60.603 57.895 0.00 0.00 0.00 3.99
544 545 3.274067 GGCCAGCCCAGTTAAACG 58.726 61.111 0.00 0.00 0.00 3.60
554 555 2.819284 ATACCTAAGCGGGCCAGCC 61.819 63.158 25.09 6.73 38.01 4.85
555 556 1.598130 CATACCTAAGCGGGCCAGC 60.598 63.158 21.36 21.36 36.97 4.85
556 557 0.687354 ATCATACCTAAGCGGGCCAG 59.313 55.000 4.39 0.00 36.97 4.85
557 558 1.136828 AATCATACCTAAGCGGGCCA 58.863 50.000 4.39 0.00 36.97 5.36
558 559 2.271944 AAATCATACCTAAGCGGGCC 57.728 50.000 0.00 0.00 36.97 5.80
559 560 3.004419 GGAAAAATCATACCTAAGCGGGC 59.996 47.826 0.00 0.00 36.97 6.13
560 561 4.275936 CAGGAAAAATCATACCTAAGCGGG 59.724 45.833 0.00 0.00 36.97 6.13
561 562 5.123227 TCAGGAAAAATCATACCTAAGCGG 58.877 41.667 0.00 0.00 39.35 5.52
562 563 6.867662 ATCAGGAAAAATCATACCTAAGCG 57.132 37.500 0.00 0.00 0.00 4.68
563 564 9.305925 CAAAATCAGGAAAAATCATACCTAAGC 57.694 33.333 0.00 0.00 0.00 3.09
566 567 9.973661 TCTCAAAATCAGGAAAAATCATACCTA 57.026 29.630 0.00 0.00 0.00 3.08
567 568 8.884124 TCTCAAAATCAGGAAAAATCATACCT 57.116 30.769 0.00 0.00 0.00 3.08
572 573 9.492973 GGAAATTCTCAAAATCAGGAAAAATCA 57.507 29.630 0.00 0.00 0.00 2.57
573 574 8.650714 CGGAAATTCTCAAAATCAGGAAAAATC 58.349 33.333 0.00 0.00 0.00 2.17
574 575 7.603784 CCGGAAATTCTCAAAATCAGGAAAAAT 59.396 33.333 0.00 0.00 0.00 1.82
575 576 6.928492 CCGGAAATTCTCAAAATCAGGAAAAA 59.072 34.615 0.00 0.00 0.00 1.94
576 577 6.266558 TCCGGAAATTCTCAAAATCAGGAAAA 59.733 34.615 0.00 0.00 32.61 2.29
577 578 5.772672 TCCGGAAATTCTCAAAATCAGGAAA 59.227 36.000 0.00 0.00 32.61 3.13
578 579 5.321102 TCCGGAAATTCTCAAAATCAGGAA 58.679 37.500 0.00 0.00 32.61 3.36
579 580 4.917385 TCCGGAAATTCTCAAAATCAGGA 58.083 39.130 0.00 0.00 33.01 3.86
580 581 5.415701 TCTTCCGGAAATTCTCAAAATCAGG 59.584 40.000 19.39 0.30 0.00 3.86
581 582 6.500684 TCTTCCGGAAATTCTCAAAATCAG 57.499 37.500 19.39 0.63 0.00 2.90
582 583 7.394359 AGAATCTTCCGGAAATTCTCAAAATCA 59.606 33.333 29.40 5.88 35.37 2.57
583 584 7.699812 CAGAATCTTCCGGAAATTCTCAAAATC 59.300 37.037 30.79 16.32 37.59 2.17
584 585 7.363268 CCAGAATCTTCCGGAAATTCTCAAAAT 60.363 37.037 30.79 18.33 37.59 1.82
585 586 6.071952 CCAGAATCTTCCGGAAATTCTCAAAA 60.072 38.462 30.79 7.93 37.59 2.44
586 587 5.415701 CCAGAATCTTCCGGAAATTCTCAAA 59.584 40.000 30.79 8.53 37.59 2.69
587 588 4.943705 CCAGAATCTTCCGGAAATTCTCAA 59.056 41.667 30.79 9.12 37.59 3.02
588 589 4.019321 ACCAGAATCTTCCGGAAATTCTCA 60.019 41.667 30.79 9.73 37.59 3.27
589 590 4.518249 ACCAGAATCTTCCGGAAATTCTC 58.482 43.478 30.79 20.82 37.59 2.87
590 591 4.226168 AGACCAGAATCTTCCGGAAATTCT 59.774 41.667 29.40 29.40 39.67 2.40
591 592 4.333926 CAGACCAGAATCTTCCGGAAATTC 59.666 45.833 27.25 27.25 0.00 2.17
592 593 4.265073 CAGACCAGAATCTTCCGGAAATT 58.735 43.478 19.39 18.85 0.00 1.82
593 594 3.370953 CCAGACCAGAATCTTCCGGAAAT 60.371 47.826 19.39 11.69 0.00 2.17
594 595 2.027192 CCAGACCAGAATCTTCCGGAAA 60.027 50.000 19.39 9.80 0.00 3.13
595 596 1.555075 CCAGACCAGAATCTTCCGGAA 59.445 52.381 17.73 17.73 0.00 4.30
596 597 1.195115 CCAGACCAGAATCTTCCGGA 58.805 55.000 0.00 0.00 0.00 5.14
597 598 0.905357 ACCAGACCAGAATCTTCCGG 59.095 55.000 0.00 0.00 0.00 5.14
598 599 2.622436 GAACCAGACCAGAATCTTCCG 58.378 52.381 0.00 0.00 0.00 4.30
599 600 2.622436 CGAACCAGACCAGAATCTTCC 58.378 52.381 0.00 0.00 0.00 3.46
600 601 2.622436 CCGAACCAGACCAGAATCTTC 58.378 52.381 0.00 0.00 0.00 2.87
601 602 1.279271 CCCGAACCAGACCAGAATCTT 59.721 52.381 0.00 0.00 0.00 2.40
602 603 0.905357 CCCGAACCAGACCAGAATCT 59.095 55.000 0.00 0.00 0.00 2.40
603 604 0.613777 ACCCGAACCAGACCAGAATC 59.386 55.000 0.00 0.00 0.00 2.52
604 605 0.613777 GACCCGAACCAGACCAGAAT 59.386 55.000 0.00 0.00 0.00 2.40
605 606 1.477685 GGACCCGAACCAGACCAGAA 61.478 60.000 0.00 0.00 0.00 3.02
606 607 1.911766 GGACCCGAACCAGACCAGA 60.912 63.158 0.00 0.00 0.00 3.86
607 608 2.214216 TGGACCCGAACCAGACCAG 61.214 63.158 0.00 0.00 33.22 4.00
608 609 2.122769 TGGACCCGAACCAGACCA 60.123 61.111 0.00 0.00 33.22 4.02
613 614 0.256464 ACAAAACTGGACCCGAACCA 59.744 50.000 0.00 0.00 35.96 3.67
614 615 2.259266 TACAAAACTGGACCCGAACC 57.741 50.000 0.00 0.00 0.00 3.62
615 616 4.841443 AAATACAAAACTGGACCCGAAC 57.159 40.909 0.00 0.00 0.00 3.95
616 617 5.134661 AGAAAATACAAAACTGGACCCGAA 58.865 37.500 0.00 0.00 0.00 4.30
617 618 4.721132 AGAAAATACAAAACTGGACCCGA 58.279 39.130 0.00 0.00 0.00 5.14
618 619 5.447624 AAGAAAATACAAAACTGGACCCG 57.552 39.130 0.00 0.00 0.00 5.28
619 620 5.538813 AGGAAGAAAATACAAAACTGGACCC 59.461 40.000 0.00 0.00 0.00 4.46
620 621 6.650427 AGGAAGAAAATACAAAACTGGACC 57.350 37.500 0.00 0.00 0.00 4.46
621 622 8.942338 AAAAGGAAGAAAATACAAAACTGGAC 57.058 30.769 0.00 0.00 0.00 4.02
634 635 9.647797 GAAGAAAACCAGTAAAAAGGAAGAAAA 57.352 29.630 0.00 0.00 0.00 2.29
635 636 7.971722 CGAAGAAAACCAGTAAAAAGGAAGAAA 59.028 33.333 0.00 0.00 0.00 2.52
636 637 7.415877 CCGAAGAAAACCAGTAAAAAGGAAGAA 60.416 37.037 0.00 0.00 0.00 2.52
637 638 6.038936 CCGAAGAAAACCAGTAAAAAGGAAGA 59.961 38.462 0.00 0.00 0.00 2.87
638 639 6.206498 CCGAAGAAAACCAGTAAAAAGGAAG 58.794 40.000 0.00 0.00 0.00 3.46
639 640 5.068067 CCCGAAGAAAACCAGTAAAAAGGAA 59.932 40.000 0.00 0.00 0.00 3.36
640 641 4.581409 CCCGAAGAAAACCAGTAAAAAGGA 59.419 41.667 0.00 0.00 0.00 3.36
641 642 4.340097 ACCCGAAGAAAACCAGTAAAAAGG 59.660 41.667 0.00 0.00 0.00 3.11
642 643 5.509716 ACCCGAAGAAAACCAGTAAAAAG 57.490 39.130 0.00 0.00 0.00 2.27
643 644 5.918426 AACCCGAAGAAAACCAGTAAAAA 57.082 34.783 0.00 0.00 0.00 1.94
644 645 5.918426 AAACCCGAAGAAAACCAGTAAAA 57.082 34.783 0.00 0.00 0.00 1.52
645 646 5.918426 AAAACCCGAAGAAAACCAGTAAA 57.082 34.783 0.00 0.00 0.00 2.01
646 647 5.163530 GGAAAAACCCGAAGAAAACCAGTAA 60.164 40.000 0.00 0.00 0.00 2.24
647 648 4.338964 GGAAAAACCCGAAGAAAACCAGTA 59.661 41.667 0.00 0.00 0.00 2.74
648 649 3.131577 GGAAAAACCCGAAGAAAACCAGT 59.868 43.478 0.00 0.00 0.00 4.00
649 650 3.383505 AGGAAAAACCCGAAGAAAACCAG 59.616 43.478 0.00 0.00 40.05 4.00
650 651 3.367321 AGGAAAAACCCGAAGAAAACCA 58.633 40.909 0.00 0.00 40.05 3.67
651 652 4.395959 AAGGAAAAACCCGAAGAAAACC 57.604 40.909 0.00 0.00 40.05 3.27
652 653 6.369340 TGAAAAAGGAAAAACCCGAAGAAAAC 59.631 34.615 0.00 0.00 40.05 2.43
653 654 6.465084 TGAAAAAGGAAAAACCCGAAGAAAA 58.535 32.000 0.00 0.00 40.05 2.29
654 655 6.038997 TGAAAAAGGAAAAACCCGAAGAAA 57.961 33.333 0.00 0.00 40.05 2.52
655 656 5.662674 TGAAAAAGGAAAAACCCGAAGAA 57.337 34.783 0.00 0.00 40.05 2.52
656 657 5.662674 TTGAAAAAGGAAAAACCCGAAGA 57.337 34.783 0.00 0.00 40.05 2.87
657 658 6.918892 AATTGAAAAAGGAAAAACCCGAAG 57.081 33.333 0.00 0.00 40.05 3.79
658 659 7.822822 TGTAAATTGAAAAAGGAAAAACCCGAA 59.177 29.630 0.00 0.00 40.05 4.30
659 660 7.328737 TGTAAATTGAAAAAGGAAAAACCCGA 58.671 30.769 0.00 0.00 40.05 5.14
660 661 7.541122 TGTAAATTGAAAAAGGAAAAACCCG 57.459 32.000 0.00 0.00 40.05 5.28
744 745 9.952030 AGAGGTTTTCTAACATTTTTGGAAAAA 57.048 25.926 7.98 0.00 37.54 1.94
791 792 9.569122 ACCACTGTTTTTCTACATAACTAACAT 57.431 29.630 0.00 0.00 0.00 2.71
792 793 8.832521 CACCACTGTTTTTCTACATAACTAACA 58.167 33.333 0.00 0.00 0.00 2.41
793 794 8.833493 ACACCACTGTTTTTCTACATAACTAAC 58.167 33.333 0.00 0.00 0.00 2.34
794 795 8.967664 ACACCACTGTTTTTCTACATAACTAA 57.032 30.769 0.00 0.00 0.00 2.24
795 796 8.967664 AACACCACTGTTTTTCTACATAACTA 57.032 30.769 0.00 0.00 37.31 2.24
796 797 7.875327 AACACCACTGTTTTTCTACATAACT 57.125 32.000 0.00 0.00 37.31 2.24
825 826 9.255029 CCCCAAGATTCTTAAAAGAGGATTTTA 57.745 33.333 0.00 0.00 36.22 1.52
826 827 7.955750 TCCCCAAGATTCTTAAAAGAGGATTTT 59.044 33.333 0.00 0.00 36.22 1.82
827 828 7.478721 TCCCCAAGATTCTTAAAAGAGGATTT 58.521 34.615 0.00 0.00 36.22 2.17
828 829 7.044496 TCCCCAAGATTCTTAAAAGAGGATT 57.956 36.000 0.00 0.00 36.22 3.01
829 830 6.658555 TCCCCAAGATTCTTAAAAGAGGAT 57.341 37.500 0.00 0.00 36.22 3.24
830 831 6.658555 ATCCCCAAGATTCTTAAAAGAGGA 57.341 37.500 0.00 0.61 36.22 3.71
831 832 8.823220 TTAATCCCCAAGATTCTTAAAAGAGG 57.177 34.615 0.00 0.00 44.34 3.69
839 840 9.190317 GTGAACTATTTAATCCCCAAGATTCTT 57.810 33.333 0.00 0.00 44.34 2.52
840 841 8.336235 TGTGAACTATTTAATCCCCAAGATTCT 58.664 33.333 0.00 0.00 44.34 2.40
841 842 8.519799 TGTGAACTATTTAATCCCCAAGATTC 57.480 34.615 0.00 0.00 44.34 2.52
843 844 8.506083 AGATGTGAACTATTTAATCCCCAAGAT 58.494 33.333 0.00 0.00 36.48 2.40
844 845 7.872138 AGATGTGAACTATTTAATCCCCAAGA 58.128 34.615 0.00 0.00 0.00 3.02
845 846 8.525290 AAGATGTGAACTATTTAATCCCCAAG 57.475 34.615 0.00 0.00 0.00 3.61
846 847 8.893563 AAAGATGTGAACTATTTAATCCCCAA 57.106 30.769 0.00 0.00 0.00 4.12
847 848 8.336235 AGAAAGATGTGAACTATTTAATCCCCA 58.664 33.333 0.00 0.00 0.00 4.96
848 849 8.624776 CAGAAAGATGTGAACTATTTAATCCCC 58.375 37.037 0.00 0.00 0.00 4.81
849 850 9.396022 TCAGAAAGATGTGAACTATTTAATCCC 57.604 33.333 0.00 0.00 0.00 3.85
853 854 8.730680 GCCTTCAGAAAGATGTGAACTATTTAA 58.269 33.333 0.00 0.00 34.22 1.52
854 855 7.336931 GGCCTTCAGAAAGATGTGAACTATTTA 59.663 37.037 0.00 0.00 34.22 1.40
855 856 6.151817 GGCCTTCAGAAAGATGTGAACTATTT 59.848 38.462 0.00 0.00 34.22 1.40
856 857 5.649831 GGCCTTCAGAAAGATGTGAACTATT 59.350 40.000 0.00 0.00 34.22 1.73
857 858 5.189180 GGCCTTCAGAAAGATGTGAACTAT 58.811 41.667 0.00 0.00 34.22 2.12
858 859 4.041567 TGGCCTTCAGAAAGATGTGAACTA 59.958 41.667 3.32 0.00 34.22 2.24
859 860 3.181440 TGGCCTTCAGAAAGATGTGAACT 60.181 43.478 3.32 0.00 34.22 3.01
860 861 3.149196 TGGCCTTCAGAAAGATGTGAAC 58.851 45.455 3.32 0.00 34.22 3.18
861 862 3.415212 CTGGCCTTCAGAAAGATGTGAA 58.585 45.455 3.32 0.00 46.18 3.18
862 863 3.063510 CTGGCCTTCAGAAAGATGTGA 57.936 47.619 3.32 0.00 46.18 3.58
878 879 2.820037 GCACCTTACGGCTCTGGC 60.820 66.667 0.00 0.00 37.82 4.85
879 880 2.509336 CGCACCTTACGGCTCTGG 60.509 66.667 0.00 0.00 0.00 3.86
880 881 3.188786 GCGCACCTTACGGCTCTG 61.189 66.667 0.30 0.00 0.00 3.35
881 882 3.382832 AGCGCACCTTACGGCTCT 61.383 61.111 11.47 0.00 0.00 4.09
882 883 3.188786 CAGCGCACCTTACGGCTC 61.189 66.667 11.47 0.00 32.46 4.70
883 884 3.649277 CTCAGCGCACCTTACGGCT 62.649 63.158 11.47 0.00 35.84 5.52
884 885 3.188786 CTCAGCGCACCTTACGGC 61.189 66.667 11.47 0.00 0.00 5.68
885 886 2.501223 TTCCTCAGCGCACCTTACGG 62.501 60.000 11.47 0.00 0.00 4.02
886 887 0.669318 TTTCCTCAGCGCACCTTACG 60.669 55.000 11.47 0.00 0.00 3.18
887 888 1.739067 ATTTCCTCAGCGCACCTTAC 58.261 50.000 11.47 0.00 0.00 2.34
888 889 3.267483 GTTATTTCCTCAGCGCACCTTA 58.733 45.455 11.47 0.00 0.00 2.69
889 890 2.084546 GTTATTTCCTCAGCGCACCTT 58.915 47.619 11.47 0.00 0.00 3.50
890 891 1.003118 TGTTATTTCCTCAGCGCACCT 59.997 47.619 11.47 0.00 0.00 4.00
891 892 1.398390 CTGTTATTTCCTCAGCGCACC 59.602 52.381 11.47 0.00 0.00 5.01
892 893 1.202076 GCTGTTATTTCCTCAGCGCAC 60.202 52.381 11.47 0.00 43.49 5.34
893 894 1.086696 GCTGTTATTTCCTCAGCGCA 58.913 50.000 11.47 0.00 43.49 6.09
894 895 3.905900 GCTGTTATTTCCTCAGCGC 57.094 52.632 0.00 0.00 43.49 5.92
897 898 1.398390 GCCACGCTGTTATTTCCTCAG 59.602 52.381 0.00 0.00 0.00 3.35
898 899 1.448985 GCCACGCTGTTATTTCCTCA 58.551 50.000 0.00 0.00 0.00 3.86
899 900 0.733150 GGCCACGCTGTTATTTCCTC 59.267 55.000 0.00 0.00 0.00 3.71
931 932 5.682943 TTGGTCTCGTGTTTATCTTTTGG 57.317 39.130 0.00 0.00 0.00 3.28
933 934 7.584987 CAGATTTGGTCTCGTGTTTATCTTTT 58.415 34.615 0.00 0.00 34.00 2.27
946 947 4.034510 CAGAATTACCGCAGATTTGGTCTC 59.965 45.833 0.00 0.00 39.70 3.36
947 948 3.941483 CAGAATTACCGCAGATTTGGTCT 59.059 43.478 0.00 0.00 39.70 3.85
951 952 2.223572 GGGCAGAATTACCGCAGATTTG 60.224 50.000 0.00 0.00 0.00 2.32
1076 1089 2.725008 GGTCGAGGATGAGCGAGG 59.275 66.667 0.00 0.00 37.18 4.63
1254 1267 0.243095 AGTCGGCGAACCTGTAGAAC 59.757 55.000 12.92 0.00 0.00 3.01
1261 1274 3.703127 GGGGAAGTCGGCGAACCT 61.703 66.667 12.92 1.76 0.00 3.50
1367 1380 2.221169 GGCCATCGATGCAAAGTGATA 58.779 47.619 20.25 0.00 0.00 2.15
1368 1381 1.027357 GGCCATCGATGCAAAGTGAT 58.973 50.000 20.25 0.00 0.00 3.06
1404 1419 7.282585 CCCACCACTTCAATTCTTATATCTCA 58.717 38.462 0.00 0.00 0.00 3.27
1411 1426 3.517296 TGCCCACCACTTCAATTCTTA 57.483 42.857 0.00 0.00 0.00 2.10
1412 1427 2.380064 TGCCCACCACTTCAATTCTT 57.620 45.000 0.00 0.00 0.00 2.52
1479 1502 2.064581 GCCCCTGACCTATCCGTGT 61.065 63.158 0.00 0.00 0.00 4.49
1487 1510 0.107165 GCTTATTTCGCCCCTGACCT 60.107 55.000 0.00 0.00 0.00 3.85
1488 1511 0.393808 TGCTTATTTCGCCCCTGACC 60.394 55.000 0.00 0.00 0.00 4.02
1489 1512 1.680338 ATGCTTATTTCGCCCCTGAC 58.320 50.000 0.00 0.00 0.00 3.51
1490 1513 2.435372 AATGCTTATTTCGCCCCTGA 57.565 45.000 0.00 0.00 0.00 3.86
1491 1514 3.525268 AAAATGCTTATTTCGCCCCTG 57.475 42.857 0.00 0.00 0.00 4.45
1492 1515 4.039124 CCATAAAATGCTTATTTCGCCCCT 59.961 41.667 0.00 0.00 0.00 4.79
1493 1516 4.038642 TCCATAAAATGCTTATTTCGCCCC 59.961 41.667 0.00 0.00 0.00 5.80
1494 1517 5.195001 TCCATAAAATGCTTATTTCGCCC 57.805 39.130 0.00 0.00 0.00 6.13
1495 1518 8.863049 CAATATCCATAAAATGCTTATTTCGCC 58.137 33.333 0.00 0.00 0.00 5.54
1496 1519 9.410556 ACAATATCCATAAAATGCTTATTTCGC 57.589 29.630 0.00 0.00 0.00 4.70
1502 1525 8.792633 GCTACCACAATATCCATAAAATGCTTA 58.207 33.333 0.00 0.00 0.00 3.09
1503 1526 7.287466 TGCTACCACAATATCCATAAAATGCTT 59.713 33.333 0.00 0.00 0.00 3.91
1504 1527 6.777091 TGCTACCACAATATCCATAAAATGCT 59.223 34.615 0.00 0.00 0.00 3.79
1505 1528 6.980593 TGCTACCACAATATCCATAAAATGC 58.019 36.000 0.00 0.00 0.00 3.56
1506 1529 8.412456 TGTTGCTACCACAATATCCATAAAATG 58.588 33.333 0.00 0.00 0.00 2.32
1507 1530 8.532186 TGTTGCTACCACAATATCCATAAAAT 57.468 30.769 0.00 0.00 0.00 1.82
1508 1531 7.946381 TGTTGCTACCACAATATCCATAAAA 57.054 32.000 0.00 0.00 0.00 1.52
1509 1532 8.532186 AATGTTGCTACCACAATATCCATAAA 57.468 30.769 0.00 0.00 31.07 1.40
1510 1533 7.230510 GGAATGTTGCTACCACAATATCCATAA 59.769 37.037 0.00 0.00 31.07 1.90
1511 1534 6.714810 GGAATGTTGCTACCACAATATCCATA 59.285 38.462 0.00 0.00 31.07 2.74
1512 1535 5.536161 GGAATGTTGCTACCACAATATCCAT 59.464 40.000 0.00 0.00 31.07 3.41
1513 1536 4.887071 GGAATGTTGCTACCACAATATCCA 59.113 41.667 0.00 0.00 31.07 3.41
1514 1537 4.024048 CGGAATGTTGCTACCACAATATCC 60.024 45.833 0.00 0.00 31.07 2.59
1592 1616 0.176680 ACTCGCCAGATGATGACACC 59.823 55.000 0.00 0.00 0.00 4.16
1622 1646 4.141287 TGTAACATAGCACAAAAGCTGGT 58.859 39.130 0.00 0.00 46.11 4.00
1654 1678 2.804697 TTAGTAGAGCACACGCAACA 57.195 45.000 0.00 0.00 42.27 3.33
1835 1961 5.211454 GCAATTTGCAATGGGTTTACAAAC 58.789 37.500 16.35 0.00 44.26 2.93
1855 1981 2.333926 GTATGCCATATCTACGCGCAA 58.666 47.619 5.73 0.00 32.35 4.85
1861 1987 4.935205 TCGCATTTGGTATGCCATATCTAC 59.065 41.667 2.33 0.00 45.56 2.59
1888 2015 6.701145 TTGTGTAGCTTTTCACATTGGTAA 57.299 33.333 15.90 2.59 42.77 2.85
1908 2035 4.093850 GTGGTTTCTGTGTTACGAGTTTGT 59.906 41.667 0.00 0.00 0.00 2.83
2376 2524 1.500474 TGGATTGGAGGGAGTAGCAG 58.500 55.000 0.00 0.00 0.00 4.24
2402 2550 4.911390 AGCTGAACTAAAGCCATTACACT 58.089 39.130 0.00 0.00 41.82 3.55
2403 2551 5.629079 AAGCTGAACTAAAGCCATTACAC 57.371 39.130 0.00 0.00 41.82 2.90
2404 2552 6.940298 ACTAAAGCTGAACTAAAGCCATTACA 59.060 34.615 0.00 0.00 41.82 2.41
2405 2553 7.379098 ACTAAAGCTGAACTAAAGCCATTAC 57.621 36.000 0.00 0.00 41.82 1.89
2406 2554 7.663905 TGAACTAAAGCTGAACTAAAGCCATTA 59.336 33.333 0.00 0.00 41.82 1.90
2407 2555 6.490040 TGAACTAAAGCTGAACTAAAGCCATT 59.510 34.615 0.00 0.00 41.82 3.16
2650 2798 5.261216 TGGATCACCCTCAATCCTTTTAAC 58.739 41.667 0.00 0.00 41.74 2.01
3028 3353 2.237143 CAGATGGCAGGGAACTAGACAA 59.763 50.000 0.00 0.00 40.21 3.18
3075 3400 1.270274 GCACATCAATGACAACCTGCA 59.730 47.619 0.00 0.00 0.00 4.41
3234 3559 3.838317 TGCTCCCTCAGTTACAGTGTTAT 59.162 43.478 0.00 0.00 0.00 1.89
3657 4000 6.223852 AGGGTCGCAACTATAAGATATGTTG 58.776 40.000 0.00 0.00 41.64 3.33
3703 4046 1.406539 CAGATGGTAAACCTGGCATGC 59.593 52.381 9.90 9.90 36.82 4.06
3822 4165 3.154589 GGTTCCTTGAGCTAACCCG 57.845 57.895 4.25 0.00 37.31 5.28
3933 4276 1.498576 TCCTCCTCAGATCTCCTGGAG 59.501 57.143 17.84 17.84 43.12 3.86
3938 4281 2.176798 TCCTTCTCCTCCTCAGATCTCC 59.823 54.545 0.00 0.00 0.00 3.71
4089 4432 5.548406 AGTACAATCACCAGTTTAGGTCAC 58.452 41.667 0.00 0.00 40.77 3.67
4091 4434 6.485648 ACAAAGTACAATCACCAGTTTAGGTC 59.514 38.462 0.00 0.00 40.77 3.85
4094 4437 8.154649 AGAACAAAGTACAATCACCAGTTTAG 57.845 34.615 0.00 0.00 0.00 1.85
4128 4479 5.674525 TGTCGAGAGCATTTCAATAATCCT 58.325 37.500 0.00 0.00 0.00 3.24
4134 4485 4.756642 TCACTTTGTCGAGAGCATTTCAAT 59.243 37.500 0.00 0.00 0.00 2.57
4144 4495 4.873746 AAAGGATCTCACTTTGTCGAGA 57.126 40.909 0.00 0.00 42.25 4.04
4154 4505 4.932200 CACTACAGACCAAAAGGATCTCAC 59.068 45.833 0.00 0.00 0.00 3.51
4155 4506 4.563580 GCACTACAGACCAAAAGGATCTCA 60.564 45.833 0.00 0.00 0.00 3.27
4156 4507 3.935828 GCACTACAGACCAAAAGGATCTC 59.064 47.826 0.00 0.00 0.00 2.75
4158 4509 3.944087 AGCACTACAGACCAAAAGGATC 58.056 45.455 0.00 0.00 0.00 3.36
4159 4510 4.373156 AAGCACTACAGACCAAAAGGAT 57.627 40.909 0.00 0.00 0.00 3.24
4160 4511 3.857157 AAGCACTACAGACCAAAAGGA 57.143 42.857 0.00 0.00 0.00 3.36
4162 4513 5.066505 AGACAAAAGCACTACAGACCAAAAG 59.933 40.000 0.00 0.00 0.00 2.27
4163 4514 4.947388 AGACAAAAGCACTACAGACCAAAA 59.053 37.500 0.00 0.00 0.00 2.44
4165 4516 3.876914 CAGACAAAAGCACTACAGACCAA 59.123 43.478 0.00 0.00 0.00 3.67
4166 4517 3.466836 CAGACAAAAGCACTACAGACCA 58.533 45.455 0.00 0.00 0.00 4.02
4167 4518 2.808543 CCAGACAAAAGCACTACAGACC 59.191 50.000 0.00 0.00 0.00 3.85
4168 4519 2.224314 GCCAGACAAAAGCACTACAGAC 59.776 50.000 0.00 0.00 0.00 3.51
4203 4554 4.872664 AGACCAAGAAGTAACTCGTGAAG 58.127 43.478 0.00 0.00 0.00 3.02
4294 4645 3.525537 AGATGGAGTACAAACATCAGCG 58.474 45.455 19.73 0.00 42.55 5.18
4336 4687 4.595116 GCTCATAAGCTCGTACGAGTAAA 58.405 43.478 37.58 25.79 45.55 2.01
4395 4746 3.108288 GCTTCAGGTCCGGGGATCC 62.108 68.421 1.92 1.92 0.00 3.36
4401 4752 1.301677 GCAAGAAGCTTCAGGTCCGG 61.302 60.000 27.57 9.78 41.15 5.14
4402 4753 0.603707 TGCAAGAAGCTTCAGGTCCG 60.604 55.000 27.57 10.18 45.94 4.79
4409 4760 3.978718 AAACAGACTGCAAGAAGCTTC 57.021 42.857 19.11 19.11 45.94 3.86
4410 4761 4.823989 ACATAAACAGACTGCAAGAAGCTT 59.176 37.500 0.00 0.00 45.94 3.74
4418 4769 6.539826 CCATCTTCATACATAAACAGACTGCA 59.460 38.462 1.25 0.00 0.00 4.41
4541 4892 3.181487 GCAGTTTCAGACAGCCAAGAAAA 60.181 43.478 0.00 0.00 34.95 2.29
4547 4898 3.423539 AATAGCAGTTTCAGACAGCCA 57.576 42.857 0.00 0.00 41.30 4.75
4584 4935 5.084055 CGGCAAGTATTAAGGAAACGAAAC 58.916 41.667 0.00 0.00 0.00 2.78
4596 4947 3.420300 TTTGACCCACGGCAAGTATTA 57.580 42.857 0.00 0.00 0.00 0.98
4597 4948 2.279935 TTTGACCCACGGCAAGTATT 57.720 45.000 0.00 0.00 0.00 1.89
4599 4950 1.883275 CATTTTGACCCACGGCAAGTA 59.117 47.619 0.00 0.00 0.00 2.24
4601 4952 0.958091 TCATTTTGACCCACGGCAAG 59.042 50.000 0.00 0.00 0.00 4.01
4602 4953 1.271934 CATCATTTTGACCCACGGCAA 59.728 47.619 0.00 0.00 0.00 4.52
4606 5003 3.913548 TCAACATCATTTTGACCCACG 57.086 42.857 0.00 0.00 0.00 4.94
4609 5006 6.753279 CACATGTATCAACATCATTTTGACCC 59.247 38.462 0.00 0.00 44.70 4.46
4611 5008 6.807720 TGCACATGTATCAACATCATTTTGAC 59.192 34.615 0.00 0.00 44.70 3.18
4660 5057 3.127425 AGTTTGTAGTTCCACTGAGCC 57.873 47.619 0.00 0.00 0.00 4.70
4662 5059 6.927294 AGAAAAGTTTGTAGTTCCACTGAG 57.073 37.500 0.00 0.00 0.00 3.35
4669 5066 5.065602 ACCCGACAAGAAAAGTTTGTAGTTC 59.934 40.000 0.00 0.00 38.78 3.01
4673 5070 5.524646 CACTACCCGACAAGAAAAGTTTGTA 59.475 40.000 0.00 0.00 38.78 2.41
4679 5076 5.941948 AATTCACTACCCGACAAGAAAAG 57.058 39.130 0.00 0.00 0.00 2.27
4680 5077 5.410439 GCTAATTCACTACCCGACAAGAAAA 59.590 40.000 0.00 0.00 0.00 2.29
4684 5081 4.113354 GAGCTAATTCACTACCCGACAAG 58.887 47.826 0.00 0.00 0.00 3.16
4691 5088 1.070289 CCCGGGAGCTAATTCACTACC 59.930 57.143 18.48 0.00 33.07 3.18
4721 5118 5.950883 TCCTATTATACTTCCGAATGAGCG 58.049 41.667 0.00 0.00 0.00 5.03
4752 5167 3.521126 AGTGAACAGGGCATTCAGATACT 59.479 43.478 0.00 0.00 36.76 2.12
4756 5171 2.106338 TGAAGTGAACAGGGCATTCAGA 59.894 45.455 0.00 0.00 36.76 3.27
4757 5172 2.507484 TGAAGTGAACAGGGCATTCAG 58.493 47.619 0.00 0.00 36.76 3.02
4758 5173 2.655090 TGAAGTGAACAGGGCATTCA 57.345 45.000 0.00 0.00 33.68 2.57
4759 5174 3.119352 GGATTGAAGTGAACAGGGCATTC 60.119 47.826 0.00 0.00 0.00 2.67
4760 5175 2.827921 GGATTGAAGTGAACAGGGCATT 59.172 45.455 0.00 0.00 0.00 3.56
4761 5176 2.042162 AGGATTGAAGTGAACAGGGCAT 59.958 45.455 0.00 0.00 0.00 4.40
4794 5262 4.614946 TCTTAGCATCATGTGATCTCGTG 58.385 43.478 10.16 10.16 31.21 4.35
4796 5264 5.348179 GGATTCTTAGCATCATGTGATCTCG 59.652 44.000 0.00 0.00 31.21 4.04
4800 5268 7.016957 TCCTAAGGATTCTTAGCATCATGTGAT 59.983 37.037 14.59 0.00 46.84 3.06
4807 5275 7.335673 GCCTAATTCCTAAGGATTCTTAGCATC 59.664 40.741 14.59 0.00 46.84 3.91
4812 5280 7.460214 TTGGCCTAATTCCTAAGGATTCTTA 57.540 36.000 3.32 0.00 34.58 2.10
4871 5339 9.474313 TGCCATTTATTTGTTCTATAAGTTCCT 57.526 29.630 0.00 0.00 0.00 3.36
4879 5347 9.081204 TCTATGCATGCCATTTATTTGTTCTAT 57.919 29.630 16.68 0.00 35.34 1.98
4880 5348 8.462589 TCTATGCATGCCATTTATTTGTTCTA 57.537 30.769 16.68 0.00 35.34 2.10
4881 5349 7.350744 TCTATGCATGCCATTTATTTGTTCT 57.649 32.000 16.68 0.00 35.34 3.01
4882 5350 8.422973 TTTCTATGCATGCCATTTATTTGTTC 57.577 30.769 16.68 0.00 35.34 3.18
4883 5351 8.789825 TTTTCTATGCATGCCATTTATTTGTT 57.210 26.923 16.68 0.00 35.34 2.83
4884 5352 8.789825 TTTTTCTATGCATGCCATTTATTTGT 57.210 26.923 16.68 0.00 35.34 2.83
4910 5381 7.890655 ACAGGATTTTAAGCATTAGGACTCTTT 59.109 33.333 0.00 0.00 0.00 2.52
4911 5382 7.406104 ACAGGATTTTAAGCATTAGGACTCTT 58.594 34.615 0.00 0.00 0.00 2.85
4912 5383 6.963322 ACAGGATTTTAAGCATTAGGACTCT 58.037 36.000 0.00 0.00 0.00 3.24
4913 5384 7.442666 CCTACAGGATTTTAAGCATTAGGACTC 59.557 40.741 0.00 0.00 37.39 3.36
4914 5385 7.127339 TCCTACAGGATTTTAAGCATTAGGACT 59.873 37.037 0.00 0.00 39.78 3.85
5028 5500 4.718858 TCACGTCTGTTTTGTAAATCCG 57.281 40.909 0.00 0.00 0.00 4.18
5046 5518 3.490759 CGCACAGACGGCCATCAC 61.491 66.667 0.00 0.00 0.00 3.06
5049 5521 1.169661 TTTTTCGCACAGACGGCCAT 61.170 50.000 2.24 0.00 0.00 4.40
5050 5522 1.169661 ATTTTTCGCACAGACGGCCA 61.170 50.000 2.24 0.00 0.00 5.36
5051 5523 0.039527 AATTTTTCGCACAGACGGCC 60.040 50.000 0.00 0.00 0.00 6.13
5052 5524 1.052287 CAATTTTTCGCACAGACGGC 58.948 50.000 0.00 0.00 0.00 5.68
5053 5525 1.265635 TCCAATTTTTCGCACAGACGG 59.734 47.619 0.00 0.00 0.00 4.79
5054 5526 2.032030 AGTCCAATTTTTCGCACAGACG 60.032 45.455 0.00 0.00 0.00 4.18
5055 5527 3.003275 TGAGTCCAATTTTTCGCACAGAC 59.997 43.478 0.00 0.00 0.00 3.51
5056 5528 3.210227 TGAGTCCAATTTTTCGCACAGA 58.790 40.909 0.00 0.00 0.00 3.41
5057 5529 3.624326 TGAGTCCAATTTTTCGCACAG 57.376 42.857 0.00 0.00 0.00 3.66
5058 5530 4.155826 CCTATGAGTCCAATTTTTCGCACA 59.844 41.667 0.00 0.00 0.00 4.57
5059 5531 4.156008 ACCTATGAGTCCAATTTTTCGCAC 59.844 41.667 0.00 0.00 0.00 5.34
5060 5532 4.331968 ACCTATGAGTCCAATTTTTCGCA 58.668 39.130 0.00 0.00 0.00 5.10
5061 5533 4.394920 TGACCTATGAGTCCAATTTTTCGC 59.605 41.667 0.00 0.00 35.83 4.70
5062 5534 6.683974 ATGACCTATGAGTCCAATTTTTCG 57.316 37.500 0.00 0.00 35.83 3.46
5063 5535 7.500559 AGCTATGACCTATGAGTCCAATTTTTC 59.499 37.037 0.00 0.00 35.83 2.29
5064 5536 7.349598 AGCTATGACCTATGAGTCCAATTTTT 58.650 34.615 0.00 0.00 35.83 1.94
5065 5537 6.904626 AGCTATGACCTATGAGTCCAATTTT 58.095 36.000 0.00 0.00 35.83 1.82
5066 5538 6.506538 AGCTATGACCTATGAGTCCAATTT 57.493 37.500 0.00 0.00 35.83 1.82
5067 5539 6.784969 ACTAGCTATGACCTATGAGTCCAATT 59.215 38.462 0.00 0.00 35.83 2.32
5068 5540 6.318913 ACTAGCTATGACCTATGAGTCCAAT 58.681 40.000 0.00 0.00 35.83 3.16
5069 5541 5.706447 ACTAGCTATGACCTATGAGTCCAA 58.294 41.667 0.00 0.00 35.83 3.53
5070 5542 5.326283 ACTAGCTATGACCTATGAGTCCA 57.674 43.478 0.00 0.00 35.83 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.