Multiple sequence alignment - TraesCS6D01G066100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G066100 chr6D 100.000 8384 0 0 1 8384 32441272 32449655 0.000000e+00 15483.0
1 TraesCS6D01G066100 chr6D 97.143 35 1 0 95 129 6247754 6247720 9.090000e-05 60.2
2 TraesCS6D01G066100 chr6B 92.596 4133 214 31 3488 7578 68243440 68247522 0.000000e+00 5853.0
3 TraesCS6D01G066100 chr6B 85.247 2352 171 85 164 2406 68239716 68242000 0.000000e+00 2259.0
4 TraesCS6D01G066100 chr6B 83.358 679 54 33 2738 3388 68242634 68243281 2.620000e-159 573.0
5 TraesCS6D01G066100 chr6B 93.913 345 21 0 8037 8381 68262332 68262676 9.640000e-144 521.0
6 TraesCS6D01G066100 chr6B 81.890 127 21 2 1 126 153545324 153545449 1.150000e-18 106.0
7 TraesCS6D01G066100 chr6A 93.483 2455 116 17 3525 5963 36919231 36921657 0.000000e+00 3607.0
8 TraesCS6D01G066100 chr6A 82.337 3261 225 153 1 3074 36915656 36918752 0.000000e+00 2507.0
9 TraesCS6D01G066100 chr6A 88.883 1781 117 36 5948 7679 36921674 36923422 0.000000e+00 2117.0
10 TraesCS6D01G066100 chr6A 90.399 677 58 2 7708 8384 36924839 36925508 0.000000e+00 883.0
11 TraesCS6D01G066100 chr6A 86.012 336 24 7 3161 3495 36918803 36919116 1.040000e-88 339.0
12 TraesCS6D01G066100 chr4A 79.721 646 87 27 4058 4698 690222381 690222987 2.160000e-115 427.0
13 TraesCS6D01G066100 chr7A 79.567 646 88 28 4058 4698 200616291 200615685 1.010000e-113 422.0
14 TraesCS6D01G066100 chr1A 81.695 295 28 12 4639 4926 477054232 477054507 1.100000e-53 222.0
15 TraesCS6D01G066100 chr2B 81.818 286 28 9 4646 4926 309474675 309474409 1.420000e-52 219.0
16 TraesCS6D01G066100 chr2B 82.212 208 30 6 4070 4275 309474981 309474779 1.120000e-38 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G066100 chr6D 32441272 32449655 8383 False 15483.0 15483 100.0000 1 8384 1 chr6D.!!$F1 8383
1 TraesCS6D01G066100 chr6B 68239716 68247522 7806 False 2895.0 5853 87.0670 164 7578 3 chr6B.!!$F3 7414
2 TraesCS6D01G066100 chr6A 36915656 36925508 9852 False 1890.6 3607 88.2228 1 8384 5 chr6A.!!$F1 8383
3 TraesCS6D01G066100 chr4A 690222381 690222987 606 False 427.0 427 79.7210 4058 4698 1 chr4A.!!$F1 640
4 TraesCS6D01G066100 chr7A 200615685 200616291 606 True 422.0 422 79.5670 4058 4698 1 chr7A.!!$R1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.049066 AGGTAGGAGGGAGGGAGGTA 59.951 60.0 0.00 0.0 0.00 3.08 F
645 694 0.100682 GGATGAAGACAGCGCTACGA 59.899 55.0 10.99 0.0 32.75 3.43 F
859 943 0.108585 TCCAGACAAGCAACCACCTC 59.891 55.0 0.00 0.0 0.00 3.85 F
2011 2254 0.038526 GTGTCTCCGTGTAGGTGTGG 60.039 60.0 0.00 0.0 41.99 4.17 F
2651 2957 0.178915 ACCAGCTACCAGTACCACCA 60.179 55.0 0.00 0.0 0.00 4.17 F
3348 3984 0.257616 TTATCCTGGCTTTTCGGGGG 59.742 55.0 0.00 0.0 34.02 5.40 F
3890 4638 0.743688 CTCCTCACTGACCAGATCCG 59.256 60.0 3.76 0.0 0.00 4.18 F
5716 6485 0.613853 AGGCTCCGCTACCTTGTACA 60.614 55.0 0.00 0.0 29.74 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1174 1313 0.107848 AACGCGGGGTTTATCCTGAG 60.108 55.000 12.47 0.00 34.41 3.35 R
1542 1726 0.250814 AACGAAACCCGGCCATGTAA 60.251 50.000 2.24 0.00 43.93 2.41 R
2044 2287 0.321346 CCACCACCATCCAAAAAGGC 59.679 55.000 0.00 0.00 37.29 4.35 R
3760 4508 0.178961 ACTTCAGGGGCTTGGGTTTC 60.179 55.000 0.00 0.00 0.00 2.78 R
4496 5254 2.303022 TGGCTGAAAGTAGAAGACCCAG 59.697 50.000 0.00 0.00 35.30 4.45 R
4497 5255 2.334977 TGGCTGAAAGTAGAAGACCCA 58.665 47.619 0.00 0.00 35.30 4.51 R
5816 6585 0.324943 TGTACTTGAAGAGGGCCTGC 59.675 55.000 12.95 2.21 0.00 4.85 R
7622 8474 0.667792 GCCTGACGACTTGGTCTCAC 60.668 60.000 0.00 0.00 37.81 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.741785 TCTTACCCTCTCTTTTCACATTGTAA 58.258 34.615 0.00 0.00 0.00 2.41
68 69 7.548196 TCATCCGACCATTACTTAATCAAAC 57.452 36.000 0.00 0.00 0.00 2.93
72 73 6.887545 TCCGACCATTACTTAATCAAACCAAT 59.112 34.615 0.00 0.00 0.00 3.16
73 74 6.972328 CCGACCATTACTTAATCAAACCAATG 59.028 38.462 0.00 0.00 0.00 2.82
77 78 6.757947 CCATTACTTAATCAAACCAATGGCTG 59.242 38.462 0.00 0.00 35.83 4.85
79 80 5.391312 ACTTAATCAAACCAATGGCTGAC 57.609 39.130 6.79 0.00 0.00 3.51
87 88 6.422333 TCAAACCAATGGCTGACATCTATTA 58.578 36.000 0.00 0.00 39.40 0.98
88 89 6.318648 TCAAACCAATGGCTGACATCTATTAC 59.681 38.462 0.00 0.00 39.40 1.89
89 90 4.380531 ACCAATGGCTGACATCTATTACG 58.619 43.478 0.00 0.00 39.40 3.18
93 94 4.729227 TGGCTGACATCTATTACGAACA 57.271 40.909 0.00 0.00 0.00 3.18
94 95 4.430007 TGGCTGACATCTATTACGAACAC 58.570 43.478 0.00 0.00 0.00 3.32
98 99 6.198591 GGCTGACATCTATTACGAACACTTAC 59.801 42.308 0.00 0.00 0.00 2.34
115 116 3.244112 ACTTACCTCTCGTGTGAAAAGGG 60.244 47.826 0.00 0.00 0.00 3.95
116 117 0.396811 ACCTCTCGTGTGAAAAGGGG 59.603 55.000 0.00 0.00 36.68 4.79
122 123 1.621814 TCGTGTGAAAAGGGGAGGTAG 59.378 52.381 0.00 0.00 0.00 3.18
127 128 1.214217 GAAAAGGGGAGGTAGGAGGG 58.786 60.000 0.00 0.00 0.00 4.30
132 133 2.019272 GGGAGGTAGGAGGGAGGGA 61.019 68.421 0.00 0.00 0.00 4.20
133 134 1.544703 GGAGGTAGGAGGGAGGGAG 59.455 68.421 0.00 0.00 0.00 4.30
135 136 1.231024 AGGTAGGAGGGAGGGAGGT 60.231 63.158 0.00 0.00 0.00 3.85
136 137 0.049066 AGGTAGGAGGGAGGGAGGTA 59.951 60.000 0.00 0.00 0.00 3.08
139 140 1.858246 GTAGGAGGGAGGGAGGTAAGA 59.142 57.143 0.00 0.00 0.00 2.10
140 141 0.938192 AGGAGGGAGGGAGGTAAGAG 59.062 60.000 0.00 0.00 0.00 2.85
143 144 0.557907 AGGGAGGGAGGTAAGAGGGA 60.558 60.000 0.00 0.00 0.00 4.20
144 145 0.568697 GGGAGGGAGGTAAGAGGGAT 59.431 60.000 0.00 0.00 0.00 3.85
145 146 1.483496 GGGAGGGAGGTAAGAGGGATC 60.483 61.905 0.00 0.00 0.00 3.36
146 147 1.623163 GAGGGAGGTAAGAGGGATCG 58.377 60.000 0.00 0.00 0.00 3.69
187 189 6.668541 ATTGACTCGTATGACAGGAATTTG 57.331 37.500 0.00 0.00 0.00 2.32
188 190 3.932710 TGACTCGTATGACAGGAATTTGC 59.067 43.478 0.00 0.00 0.00 3.68
189 191 4.184629 GACTCGTATGACAGGAATTTGCT 58.815 43.478 0.00 0.00 0.00 3.91
191 193 4.631813 ACTCGTATGACAGGAATTTGCTTC 59.368 41.667 0.00 0.00 0.00 3.86
270 276 6.873605 TGAACATGTTACTACAATGTCCTGAG 59.126 38.462 11.95 0.00 37.91 3.35
271 277 6.360370 ACATGTTACTACAATGTCCTGAGT 57.640 37.500 0.00 0.00 37.91 3.41
354 372 8.280258 AGGAAAGGAAGACCATCATCATAATA 57.720 34.615 0.00 0.00 38.94 0.98
364 382 5.646793 ACCATCATCATAATATGTGCTGCTC 59.353 40.000 0.00 0.00 0.00 4.26
395 413 5.924825 ACGCAGTAGTAAAACTAAACTCTGG 59.075 40.000 0.00 0.00 41.94 3.86
431 449 3.313249 CAGCACTTGAATTGCCGATATCA 59.687 43.478 3.78 0.00 41.18 2.15
490 508 8.557029 ACTAATAGAAAGTCTTCACCAAAAACG 58.443 33.333 0.00 0.00 33.64 3.60
541 563 1.924552 GGGGTGTTTAAGTGGGGGATA 59.075 52.381 0.00 0.00 0.00 2.59
542 564 2.092049 GGGGTGTTTAAGTGGGGGATAG 60.092 54.545 0.00 0.00 0.00 2.08
543 565 2.848071 GGGTGTTTAAGTGGGGGATAGA 59.152 50.000 0.00 0.00 0.00 1.98
544 566 3.371273 GGGTGTTTAAGTGGGGGATAGAC 60.371 52.174 0.00 0.00 0.00 2.59
545 567 3.522343 GGTGTTTAAGTGGGGGATAGACT 59.478 47.826 0.00 0.00 0.00 3.24
576 602 0.318762 GACAGGGCACGGAGATATCC 59.681 60.000 0.00 0.00 0.00 2.59
626 675 3.631686 CAGTACATGTGAGGAGAGAGAGG 59.368 52.174 9.11 0.00 0.00 3.69
628 677 1.643286 ACATGTGAGGAGAGAGAGGGA 59.357 52.381 0.00 0.00 0.00 4.20
630 679 2.450867 TGTGAGGAGAGAGAGGGATG 57.549 55.000 0.00 0.00 0.00 3.51
631 680 1.925959 TGTGAGGAGAGAGAGGGATGA 59.074 52.381 0.00 0.00 0.00 2.92
632 681 2.313041 TGTGAGGAGAGAGAGGGATGAA 59.687 50.000 0.00 0.00 0.00 2.57
633 682 2.958355 GTGAGGAGAGAGAGGGATGAAG 59.042 54.545 0.00 0.00 0.00 3.02
634 683 2.855599 TGAGGAGAGAGAGGGATGAAGA 59.144 50.000 0.00 0.00 0.00 2.87
635 684 3.222603 GAGGAGAGAGAGGGATGAAGAC 58.777 54.545 0.00 0.00 0.00 3.01
636 685 2.584965 AGGAGAGAGAGGGATGAAGACA 59.415 50.000 0.00 0.00 0.00 3.41
637 686 2.958355 GGAGAGAGAGGGATGAAGACAG 59.042 54.545 0.00 0.00 0.00 3.51
638 687 2.362077 GAGAGAGAGGGATGAAGACAGC 59.638 54.545 0.00 0.00 0.00 4.40
639 688 1.066908 GAGAGAGGGATGAAGACAGCG 59.933 57.143 0.00 0.00 32.75 5.18
640 689 0.529555 GAGAGGGATGAAGACAGCGC 60.530 60.000 0.00 0.00 43.84 5.92
643 692 2.979130 GGGATGAAGACAGCGCTAC 58.021 57.895 10.99 7.75 41.10 3.58
644 693 0.872021 GGGATGAAGACAGCGCTACG 60.872 60.000 10.99 0.00 41.10 3.51
645 694 0.100682 GGATGAAGACAGCGCTACGA 59.899 55.000 10.99 0.00 32.75 3.43
646 695 1.471964 GATGAAGACAGCGCTACGAG 58.528 55.000 10.99 0.00 0.00 4.18
647 696 0.526524 ATGAAGACAGCGCTACGAGC 60.527 55.000 10.99 0.00 38.02 5.03
648 697 1.874466 GAAGACAGCGCTACGAGCC 60.874 63.158 10.99 0.00 38.18 4.70
649 698 2.272918 GAAGACAGCGCTACGAGCCT 62.273 60.000 10.99 0.00 38.18 4.58
654 703 3.900892 GCGCTACGAGCCTAGCCA 61.901 66.667 0.00 0.00 38.18 4.75
696 772 2.125350 GGAGAGGACAAGCGCAGG 60.125 66.667 11.47 2.84 0.00 4.85
820 904 5.073691 CCTCCAGACCATAATCCCATTTACT 59.926 44.000 0.00 0.00 0.00 2.24
828 912 3.487120 AATCCCATTTACTACCGCTCC 57.513 47.619 0.00 0.00 0.00 4.70
829 913 1.125633 TCCCATTTACTACCGCTCCC 58.874 55.000 0.00 0.00 0.00 4.30
859 943 0.108585 TCCAGACAAGCAACCACCTC 59.891 55.000 0.00 0.00 0.00 3.85
862 946 1.062488 AGACAAGCAACCACCTCCCT 61.062 55.000 0.00 0.00 0.00 4.20
863 947 0.606673 GACAAGCAACCACCTCCCTC 60.607 60.000 0.00 0.00 0.00 4.30
864 948 1.303643 CAAGCAACCACCTCCCTCC 60.304 63.158 0.00 0.00 0.00 4.30
865 949 2.895424 AAGCAACCACCTCCCTCCG 61.895 63.158 0.00 0.00 0.00 4.63
866 950 3.637273 GCAACCACCTCCCTCCGT 61.637 66.667 0.00 0.00 0.00 4.69
868 952 1.595357 CAACCACCTCCCTCCGTAC 59.405 63.158 0.00 0.00 0.00 3.67
869 953 1.611556 AACCACCTCCCTCCGTACC 60.612 63.158 0.00 0.00 0.00 3.34
870 954 2.038329 CCACCTCCCTCCGTACCA 59.962 66.667 0.00 0.00 0.00 3.25
871 955 2.058595 CCACCTCCCTCCGTACCAG 61.059 68.421 0.00 0.00 0.00 4.00
872 956 1.000019 CACCTCCCTCCGTACCAGA 60.000 63.158 0.00 0.00 0.00 3.86
873 957 1.000107 ACCTCCCTCCGTACCAGAC 60.000 63.158 0.00 0.00 0.00 3.51
877 961 0.629596 TCCCTCCGTACCAGACAGAT 59.370 55.000 0.00 0.00 0.00 2.90
887 971 0.595588 CCAGACAGATATCGCTCGCT 59.404 55.000 0.00 0.00 0.00 4.93
890 974 1.535028 AGACAGATATCGCTCGCTCTG 59.465 52.381 0.00 11.76 40.71 3.35
894 978 1.268352 AGATATCGCTCGCTCTGTTCC 59.732 52.381 0.00 0.00 0.00 3.62
911 995 3.535962 CTCCTCCTCTGCTCGCCC 61.536 72.222 0.00 0.00 0.00 6.13
927 1011 0.618968 GCCCTTCTTCCTCCTCTCCA 60.619 60.000 0.00 0.00 0.00 3.86
940 1024 4.803426 CTCCAGCACGTCCTCCGC 62.803 72.222 0.00 0.00 41.42 5.54
949 1033 2.031163 GTCCTCCGCAGCTGTTGT 59.969 61.111 16.64 0.00 0.00 3.32
976 1081 3.854669 CGCGGGGAGGATTCTGCT 61.855 66.667 0.00 0.00 0.00 4.24
1085 1220 0.865769 GTTCGTGTTTCCTGCGATGT 59.134 50.000 0.00 0.00 34.52 3.06
1142 1277 1.043224 CGTCGATTCTCGCCGTTATC 58.957 55.000 0.00 0.00 36.45 1.75
1200 1339 0.179023 TAAACCCCGCGTTCTTTGGT 60.179 50.000 4.92 0.00 31.78 3.67
1201 1340 1.730451 AAACCCCGCGTTCTTTGGTG 61.730 55.000 4.92 0.00 31.78 4.17
1202 1341 4.038080 CCCCGCGTTCTTTGGTGC 62.038 66.667 4.92 0.00 0.00 5.01
1243 1393 4.143333 CATGGCCCAAGCAGCTGC 62.143 66.667 31.53 31.53 42.56 5.25
1260 1410 4.112341 CTGTCCCCGTCGACGTCC 62.112 72.222 33.49 19.03 35.40 4.79
1297 1449 2.296190 CCCACTACTTGCTTCCAAAACC 59.704 50.000 0.00 0.00 0.00 3.27
1306 1458 0.519077 CTTCCAAAACCGAGCAGAGC 59.481 55.000 0.00 0.00 0.00 4.09
1307 1459 0.179032 TTCCAAAACCGAGCAGAGCA 60.179 50.000 0.00 0.00 0.00 4.26
1308 1460 0.603707 TCCAAAACCGAGCAGAGCAG 60.604 55.000 0.00 0.00 0.00 4.24
1309 1461 0.603707 CCAAAACCGAGCAGAGCAGA 60.604 55.000 0.00 0.00 0.00 4.26
1315 1467 1.134848 ACCGAGCAGAGCAGAGATTTC 60.135 52.381 0.00 0.00 0.00 2.17
1350 1502 9.419297 TCATTAATGGCGATTACATTAGTACTC 57.581 33.333 15.36 0.00 40.64 2.59
1375 1527 6.362820 CGGAGTATTACTCGGAAGAATTAAGC 59.637 42.308 20.87 2.81 45.96 3.09
1385 1541 3.801594 GGAAGAATTAAGCGAGCAGAGAG 59.198 47.826 0.00 0.00 0.00 3.20
1386 1542 4.440802 GGAAGAATTAAGCGAGCAGAGAGA 60.441 45.833 0.00 0.00 0.00 3.10
1387 1543 4.305989 AGAATTAAGCGAGCAGAGAGAG 57.694 45.455 0.00 0.00 0.00 3.20
1388 1544 3.951037 AGAATTAAGCGAGCAGAGAGAGA 59.049 43.478 0.00 0.00 0.00 3.10
1435 1595 3.368531 CGGATAAAGGGAAGGGATCGATC 60.369 52.174 17.36 17.36 0.00 3.69
1436 1596 3.055021 GGATAAAGGGAAGGGATCGATCC 60.055 52.174 32.57 32.57 46.41 3.36
1451 1611 1.638133 GATCCATGGATCGATCGCTG 58.362 55.000 33.48 16.82 41.09 5.18
1452 1612 0.390866 ATCCATGGATCGATCGCTGC 60.391 55.000 22.15 6.92 0.00 5.25
1453 1613 2.031516 CCATGGATCGATCGCTGCC 61.032 63.158 18.81 11.68 0.00 4.85
1454 1614 1.005275 CATGGATCGATCGCTGCCT 60.005 57.895 18.81 0.00 0.00 4.75
1542 1726 6.200114 AGAAAAGATCCATCCAATCCAATGT 58.800 36.000 0.00 0.00 0.00 2.71
1599 1783 4.223923 TGAGTGAGAATTCCTCCTCCTTTC 59.776 45.833 0.65 0.00 41.25 2.62
1668 1888 2.256591 ACAGGAGCAAGCAACGCAG 61.257 57.895 0.00 0.00 0.00 5.18
1670 1890 4.410743 GGAGCAAGCAACGCAGGC 62.411 66.667 0.00 0.00 0.00 4.85
1699 1919 1.989165 CGCTCACTCCTTTTCTCTTCG 59.011 52.381 0.00 0.00 0.00 3.79
1705 1925 6.197364 TCACTCCTTTTCTCTTCGTCTATC 57.803 41.667 0.00 0.00 0.00 2.08
1706 1926 5.946972 TCACTCCTTTTCTCTTCGTCTATCT 59.053 40.000 0.00 0.00 0.00 1.98
1707 1927 7.110810 TCACTCCTTTTCTCTTCGTCTATCTA 58.889 38.462 0.00 0.00 0.00 1.98
1708 1928 7.776030 TCACTCCTTTTCTCTTCGTCTATCTAT 59.224 37.037 0.00 0.00 0.00 1.98
1722 1946 5.552178 GTCTATCTATCCGCCCAATCTTTT 58.448 41.667 0.00 0.00 0.00 2.27
1779 2005 0.908198 GGATGCCTGTCTCCTTGTCT 59.092 55.000 0.00 0.00 0.00 3.41
1796 2022 0.972983 TCTCAGTCCAGGCAGGCTAC 60.973 60.000 0.00 0.00 37.29 3.58
1821 2058 3.247173 CCACTACTACGGCGACTAGTAAG 59.753 52.174 16.62 11.01 31.05 2.34
1822 2059 3.868077 CACTACTACGGCGACTAGTAAGT 59.132 47.826 16.62 12.51 39.21 2.24
1823 2060 5.043903 CACTACTACGGCGACTAGTAAGTA 58.956 45.833 16.62 8.20 35.56 2.24
1824 2061 5.520288 CACTACTACGGCGACTAGTAAGTAA 59.480 44.000 16.62 0.00 35.56 2.24
1876 2116 6.825721 CCATGCCCACTTTATTATCTATCTCC 59.174 42.308 0.00 0.00 0.00 3.71
1942 2182 3.974642 GCTCCCCCTCCTTATTAAAGAGA 59.025 47.826 3.98 0.00 34.37 3.10
1994 2237 3.593551 GACGCATTGGCCGTGTGTG 62.594 63.158 26.00 19.15 40.14 3.82
1995 2238 3.659092 CGCATTGGCCGTGTGTGT 61.659 61.111 12.07 0.00 36.38 3.72
2011 2254 0.038526 GTGTCTCCGTGTAGGTGTGG 60.039 60.000 0.00 0.00 41.99 4.17
2030 2273 3.521531 GTGGGGAGAGAGAAAGAGGATTT 59.478 47.826 0.00 0.00 0.00 2.17
2037 2280 6.155393 GGAGAGAGAAAGAGGATTTGTAGGAA 59.845 42.308 0.00 0.00 0.00 3.36
2038 2281 7.181569 AGAGAGAAAGAGGATTTGTAGGAAG 57.818 40.000 0.00 0.00 0.00 3.46
2039 2282 6.156083 AGAGAGAAAGAGGATTTGTAGGAAGG 59.844 42.308 0.00 0.00 0.00 3.46
2040 2283 6.026186 AGAGAAAGAGGATTTGTAGGAAGGA 58.974 40.000 0.00 0.00 0.00 3.36
2041 2284 6.156083 AGAGAAAGAGGATTTGTAGGAAGGAG 59.844 42.308 0.00 0.00 0.00 3.69
2042 2285 6.026186 AGAAAGAGGATTTGTAGGAAGGAGA 58.974 40.000 0.00 0.00 0.00 3.71
2043 2286 6.502158 AGAAAGAGGATTTGTAGGAAGGAGAA 59.498 38.462 0.00 0.00 0.00 2.87
2044 2287 5.948742 AGAGGATTTGTAGGAAGGAGAAG 57.051 43.478 0.00 0.00 0.00 2.85
2045 2288 4.163268 AGAGGATTTGTAGGAAGGAGAAGC 59.837 45.833 0.00 0.00 0.00 3.86
2074 2325 2.512910 TGGTGGTGGATATGGAGGAT 57.487 50.000 0.00 0.00 0.00 3.24
2126 2377 2.122769 TGGTTGGGGTCACGAGGA 60.123 61.111 0.00 0.00 0.00 3.71
2137 2388 2.573869 ACGAGGAGGCACGTGATG 59.426 61.111 22.23 2.18 41.17 3.07
2149 2400 2.279120 GTGATGAGGAGCGGCTCG 60.279 66.667 22.63 0.00 0.00 5.03
2227 2487 1.217779 GTGTCCTCTGCTCTGCTCC 59.782 63.158 0.00 0.00 0.00 4.70
2301 2571 5.544562 AGATCAGATCAGATGATGGTCACAT 59.455 40.000 13.14 0.00 41.97 3.21
2391 2667 4.514441 CAGCAATCTCTCTCTCTCTCTCTC 59.486 50.000 0.00 0.00 0.00 3.20
2393 2669 4.754114 GCAATCTCTCTCTCTCTCTCTCTC 59.246 50.000 0.00 0.00 0.00 3.20
2419 2695 2.398754 TCCTTGTGTTCTCTGGAGGA 57.601 50.000 0.00 0.00 0.00 3.71
2456 2732 2.586357 GGGCGCTGCTACTGCTAC 60.586 66.667 7.64 0.00 40.48 3.58
2463 2739 2.736719 CGCTGCTACTGCTACAACAGAT 60.737 50.000 0.00 0.00 40.25 2.90
2466 2743 4.111198 CTGCTACTGCTACAACAGATCAG 58.889 47.826 0.00 0.00 40.25 2.90
2534 2811 5.243730 TGGGAAATTAGCCTCTTTTCTTGTG 59.756 40.000 0.00 0.00 31.57 3.33
2535 2812 5.243954 GGGAAATTAGCCTCTTTTCTTGTGT 59.756 40.000 0.00 0.00 31.57 3.72
2536 2813 6.239317 GGGAAATTAGCCTCTTTTCTTGTGTT 60.239 38.462 0.00 0.00 31.57 3.32
2539 2816 5.941948 TTAGCCTCTTTTCTTGTGTTAGC 57.058 39.130 0.00 0.00 0.00 3.09
2540 2817 3.820557 AGCCTCTTTTCTTGTGTTAGCA 58.179 40.909 0.00 0.00 0.00 3.49
2542 2819 4.036852 AGCCTCTTTTCTTGTGTTAGCAAC 59.963 41.667 0.00 0.00 0.00 4.17
2543 2820 4.793028 GCCTCTTTTCTTGTGTTAGCAACC 60.793 45.833 0.00 0.00 0.00 3.77
2583 2874 6.226787 CGGAATCATTGCCTAGAACTAGATT 58.773 40.000 10.04 0.00 35.21 2.40
2639 2941 1.157513 TGGAGACCACCACCAGCTA 59.842 57.895 0.00 0.00 34.77 3.32
2644 2946 1.461461 ACCACCACCAGCTACCAGT 60.461 57.895 0.00 0.00 0.00 4.00
2651 2957 0.178915 ACCAGCTACCAGTACCACCA 60.179 55.000 0.00 0.00 0.00 4.17
2660 2966 0.591170 CAGTACCACCAAACGGCAAG 59.409 55.000 0.00 0.00 0.00 4.01
2672 2978 1.620822 ACGGCAAGCAAAATTCTCCT 58.379 45.000 0.00 0.00 0.00 3.69
2677 2983 2.230750 GCAAGCAAAATTCTCCTCAGCT 59.769 45.455 0.00 0.00 0.00 4.24
2727 3033 2.544721 TGAGCTCCATTCTGGTTCTCT 58.455 47.619 12.15 1.38 39.03 3.10
2728 3034 2.235650 TGAGCTCCATTCTGGTTCTCTG 59.764 50.000 12.15 0.00 39.03 3.35
2741 3317 2.235898 GGTTCTCTGATGGAACTGAGCT 59.764 50.000 8.96 0.00 41.71 4.09
2761 3343 3.495753 GCTTGCACAATTTTGGGAAGAAG 59.504 43.478 13.25 6.29 32.66 2.85
2772 3354 6.994421 TTTTGGGAAGAAGCTATCCTTTTT 57.006 33.333 11.61 0.00 35.95 1.94
2787 3370 2.443632 CCTTTTTCCCCTCTATCTCCCC 59.556 54.545 0.00 0.00 0.00 4.81
2788 3371 3.398490 CTTTTTCCCCTCTATCTCCCCT 58.602 50.000 0.00 0.00 0.00 4.79
2790 3373 0.483328 TTCCCCTCTATCTCCCCTCG 59.517 60.000 0.00 0.00 0.00 4.63
2791 3374 1.077625 CCCCTCTATCTCCCCTCGG 59.922 68.421 0.00 0.00 0.00 4.63
2855 3439 1.346062 AGCGATCCATATCCTGTGCT 58.654 50.000 0.00 0.00 0.00 4.40
2880 3464 0.744874 TTCCGATTAGGTGGAGCTCG 59.255 55.000 7.83 0.00 41.99 5.03
2881 3465 0.395311 TCCGATTAGGTGGAGCTCGT 60.395 55.000 7.83 0.00 41.99 4.18
2882 3466 1.134007 TCCGATTAGGTGGAGCTCGTA 60.134 52.381 7.83 0.00 41.99 3.43
2906 3495 2.673368 CTCCTCCGTGAAGAAATTTCCG 59.327 50.000 14.61 10.53 0.00 4.30
3074 3686 1.005394 AGAAATTGGCCGTCGTCGT 60.005 52.632 0.00 0.00 35.01 4.34
3075 3687 1.012486 AGAAATTGGCCGTCGTCGTC 61.012 55.000 0.00 0.00 35.01 4.20
3093 3705 2.190981 GTCGGATGTGTATCAACGGAC 58.809 52.381 0.00 0.00 40.01 4.79
3121 3752 1.193323 TACGGCGTAAATGGGAGGAA 58.807 50.000 18.71 0.00 0.00 3.36
3129 3760 6.213677 GGCGTAAATGGGAGGAAATTAATTC 58.786 40.000 0.10 0.00 37.31 2.17
3240 3872 1.542915 CAGTTCTCCTGCATGGTTTGG 59.457 52.381 0.00 0.00 33.59 3.28
3243 3875 2.205022 TCTCCTGCATGGTTTGGAAG 57.795 50.000 0.00 0.00 37.07 3.46
3317 3950 8.214721 TGTTTCTCCTTTTTCCTCCTATCTAA 57.785 34.615 0.00 0.00 0.00 2.10
3348 3984 0.257616 TTATCCTGGCTTTTCGGGGG 59.742 55.000 0.00 0.00 34.02 5.40
3351 3987 4.366684 CTGGCTTTTCGGGGGCCT 62.367 66.667 0.84 0.00 45.45 5.19
3373 4009 4.864704 TTTTGGTTGATTCAGTTAGGGC 57.135 40.909 0.00 0.00 0.00 5.19
3375 4011 3.737559 TGGTTGATTCAGTTAGGGCAT 57.262 42.857 0.00 0.00 0.00 4.40
3378 4014 3.879892 GGTTGATTCAGTTAGGGCATCTC 59.120 47.826 0.00 0.00 0.00 2.75
3382 4018 1.794714 TCAGTTAGGGCATCTCTCCC 58.205 55.000 0.00 0.00 44.25 4.30
3388 4024 3.866582 GGCATCTCTCCCCCACCG 61.867 72.222 0.00 0.00 0.00 4.94
3389 4025 3.866582 GCATCTCTCCCCCACCGG 61.867 72.222 0.00 0.00 0.00 5.28
3457 4093 4.219725 AGAAGTCTTACTGCTCTGGTCTTC 59.780 45.833 0.00 0.00 22.85 2.87
3471 4107 4.578516 TCTGGTCTTCTCTTCTCGATCATC 59.421 45.833 0.00 0.00 0.00 2.92
3474 4110 4.578516 GGTCTTCTCTTCTCGATCATCTGA 59.421 45.833 0.00 0.00 0.00 3.27
3522 4261 6.153170 TGTTATTTCCATGTGACTGATGCATT 59.847 34.615 0.00 0.00 0.00 3.56
3706 4454 4.456911 ACACTATTTCCAGACAGCAACATG 59.543 41.667 0.00 0.00 0.00 3.21
3760 4508 3.665190 ACTCAAGCGTAAGAAAGGGAAG 58.335 45.455 0.00 0.00 43.02 3.46
3890 4638 0.743688 CTCCTCACTGACCAGATCCG 59.256 60.000 3.76 0.00 0.00 4.18
3988 4736 3.192212 CCTTCCCTGAAATGAAGTGAAGC 59.808 47.826 0.00 0.00 36.98 3.86
4030 4779 7.503521 TTTATTCCCAAACAATGAAAAAGGC 57.496 32.000 0.00 0.00 0.00 4.35
4031 4780 4.769345 TTCCCAAACAATGAAAAAGGCT 57.231 36.364 0.00 0.00 0.00 4.58
4042 4792 4.589216 TGAAAAAGGCTCACTCATTTGG 57.411 40.909 0.00 0.00 0.00 3.28
4043 4793 3.960102 TGAAAAAGGCTCACTCATTTGGT 59.040 39.130 0.00 0.00 0.00 3.67
4045 4795 5.104982 TGAAAAAGGCTCACTCATTTGGTTT 60.105 36.000 0.00 0.00 0.00 3.27
4076 4826 5.533482 TGTTTATGCACGGCTTAATTTGTT 58.467 33.333 0.00 0.00 30.43 2.83
4309 5065 2.875296 TGGCTAACCAACAAGATTGCT 58.125 42.857 0.00 0.00 45.37 3.91
4367 5125 8.621532 TTTAATAGCATATCTAACTTGGCTGG 57.378 34.615 0.00 0.00 33.10 4.85
4483 5241 8.360390 GTTTACATTTCAATTCTGGGTCTTCTT 58.640 33.333 0.00 0.00 0.00 2.52
4484 5242 6.983906 ACATTTCAATTCTGGGTCTTCTTT 57.016 33.333 0.00 0.00 0.00 2.52
4485 5243 9.581289 TTACATTTCAATTCTGGGTCTTCTTTA 57.419 29.630 0.00 0.00 0.00 1.85
4486 5244 7.886338 ACATTTCAATTCTGGGTCTTCTTTAC 58.114 34.615 0.00 0.00 0.00 2.01
4487 5245 7.505585 ACATTTCAATTCTGGGTCTTCTTTACA 59.494 33.333 0.00 0.00 0.00 2.41
4488 5246 8.526147 CATTTCAATTCTGGGTCTTCTTTACAT 58.474 33.333 0.00 0.00 0.00 2.29
4489 5247 7.687941 TTCAATTCTGGGTCTTCTTTACATC 57.312 36.000 0.00 0.00 0.00 3.06
4490 5248 7.020827 TCAATTCTGGGTCTTCTTTACATCT 57.979 36.000 0.00 0.00 0.00 2.90
4491 5249 7.106239 TCAATTCTGGGTCTTCTTTACATCTC 58.894 38.462 0.00 0.00 0.00 2.75
4492 5250 6.627087 ATTCTGGGTCTTCTTTACATCTCA 57.373 37.500 0.00 0.00 0.00 3.27
4493 5251 6.433847 TTCTGGGTCTTCTTTACATCTCAA 57.566 37.500 0.00 0.00 0.00 3.02
4494 5252 6.627087 TCTGGGTCTTCTTTACATCTCAAT 57.373 37.500 0.00 0.00 0.00 2.57
4495 5253 7.020827 TCTGGGTCTTCTTTACATCTCAATT 57.979 36.000 0.00 0.00 0.00 2.32
4496 5254 7.106239 TCTGGGTCTTCTTTACATCTCAATTC 58.894 38.462 0.00 0.00 0.00 2.17
4497 5255 7.020827 TGGGTCTTCTTTACATCTCAATTCT 57.979 36.000 0.00 0.00 0.00 2.40
4498 5256 6.881065 TGGGTCTTCTTTACATCTCAATTCTG 59.119 38.462 0.00 0.00 0.00 3.02
4499 5257 6.317391 GGGTCTTCTTTACATCTCAATTCTGG 59.683 42.308 0.00 0.00 0.00 3.86
4500 5258 6.317391 GGTCTTCTTTACATCTCAATTCTGGG 59.683 42.308 0.00 0.00 0.00 4.45
4501 5259 6.881602 GTCTTCTTTACATCTCAATTCTGGGT 59.118 38.462 0.00 0.00 0.00 4.51
4502 5260 7.065204 GTCTTCTTTACATCTCAATTCTGGGTC 59.935 40.741 0.00 0.00 0.00 4.46
4503 5261 6.627087 TCTTTACATCTCAATTCTGGGTCT 57.373 37.500 0.00 0.00 0.00 3.85
4504 5262 7.020827 TCTTTACATCTCAATTCTGGGTCTT 57.979 36.000 0.00 0.00 0.00 3.01
4505 5263 7.106239 TCTTTACATCTCAATTCTGGGTCTTC 58.894 38.462 0.00 0.00 0.00 2.87
4506 5264 6.627087 TTACATCTCAATTCTGGGTCTTCT 57.373 37.500 0.00 0.00 0.00 2.85
4808 5576 1.460255 CCCCACCTTCTGAGCCAAA 59.540 57.895 0.00 0.00 0.00 3.28
4890 5658 5.300752 TCAGAAGGTTGTTGATCTTCACTC 58.699 41.667 0.00 0.00 39.30 3.51
4981 5749 6.875972 AATTCAGGTGTGATTACTCCTACT 57.124 37.500 10.58 0.00 46.28 2.57
5052 5820 1.531149 CAAAGTGGTTACGCAGTCTGG 59.469 52.381 1.14 0.00 43.93 3.86
5114 5882 3.820467 TGTTCCACAACTAAATCCTGCTG 59.180 43.478 0.00 0.00 33.17 4.41
5147 5915 3.999001 TCGCATCAGCATAAATCCTGATC 59.001 43.478 0.49 0.00 44.61 2.92
5148 5916 3.126514 CGCATCAGCATAAATCCTGATCC 59.873 47.826 0.49 0.00 44.61 3.36
5224 5992 4.563786 CCAAGTCCACCTAAAGAGTCCTTC 60.564 50.000 0.00 0.00 0.00 3.46
5254 6022 3.565307 GTGGGGAATTGCTTCATGGATA 58.435 45.455 0.00 0.00 32.70 2.59
5260 6028 5.319453 GGAATTGCTTCATGGATATCCTCA 58.681 41.667 22.35 3.65 33.16 3.86
5275 6043 3.963428 TCCTCAGTTCTCTTACCTTGC 57.037 47.619 0.00 0.00 0.00 4.01
5384 6152 4.625607 ACTAACCAGACAAAGAAGGAGG 57.374 45.455 0.00 0.00 0.00 4.30
5412 6180 2.019984 CTGGCTGGTATTGCTTCTTCC 58.980 52.381 0.00 0.00 0.00 3.46
5413 6181 1.017387 GGCTGGTATTGCTTCTTCCG 58.983 55.000 0.00 0.00 0.00 4.30
5436 6204 5.208503 GTTTTTGCTCTCTGAAAGTACTGC 58.791 41.667 0.00 0.00 33.76 4.40
5470 6238 6.089820 CCATTTTGTCCGAATGTTTCATGAAG 59.910 38.462 8.41 0.00 33.65 3.02
5596 6364 5.182001 AGTTTCAGAATGCCATGACAACTAC 59.818 40.000 0.00 0.00 34.76 2.73
5641 6410 1.281960 GCTGGCGATGCTGCTATTG 59.718 57.895 0.00 0.00 34.52 1.90
5681 6450 7.805163 TGTTGTTACATCATCCCTATCAGAAT 58.195 34.615 0.00 0.00 0.00 2.40
5716 6485 0.613853 AGGCTCCGCTACCTTGTACA 60.614 55.000 0.00 0.00 29.74 2.90
5719 6488 1.409427 GCTCCGCTACCTTGTACATCT 59.591 52.381 0.00 0.00 0.00 2.90
5816 6585 5.510671 AGAGCGTTAATGTCTGTTGTTTTG 58.489 37.500 0.00 0.00 0.00 2.44
5965 6734 5.046304 TGGCCCTGCTACTCAATTATCTATC 60.046 44.000 0.00 0.00 0.00 2.08
5993 6795 6.151144 ACACTAAAATCATAGCCAAGTTGGTC 59.849 38.462 22.85 14.81 40.46 4.02
6002 6804 1.876416 GCCAAGTTGGTCGCTCAAGTA 60.876 52.381 22.85 0.00 40.46 2.24
6079 6888 2.575532 TGAACCCTTTGAGCTGACAAG 58.424 47.619 0.00 0.00 0.00 3.16
6124 6940 1.550869 CCCTTCCTGAAAATGGTGGCT 60.551 52.381 0.00 0.00 0.00 4.75
6204 7020 3.443681 ACCATTTGGACAAAGATAAGGCG 59.556 43.478 3.01 0.00 38.94 5.52
6252 7068 0.804364 GATCACACAGCCGCATTTCA 59.196 50.000 0.00 0.00 0.00 2.69
6288 7107 4.336713 GTCTCCACCTTGAATAAGAATGGC 59.663 45.833 0.00 0.00 38.69 4.40
6304 7123 2.408835 GCATGCATTTCGACGGGG 59.591 61.111 14.21 0.00 0.00 5.73
6373 7192 2.769893 GGCAAGCAATGGTTTGTGATT 58.230 42.857 0.00 0.00 37.52 2.57
6387 7206 5.337554 GTTTGTGATTATAACCGCCTTTCC 58.662 41.667 0.00 0.00 0.00 3.13
6391 7210 5.067153 TGTGATTATAACCGCCTTTCCATTG 59.933 40.000 0.00 0.00 0.00 2.82
6442 7261 5.144692 TCTTCTGTGATTCTGTCTTCAGG 57.855 43.478 0.00 0.00 41.59 3.86
6452 7271 2.369860 TCTGTCTTCAGGCTTGACATGT 59.630 45.455 0.00 0.00 41.59 3.21
6454 7273 2.079925 GTCTTCAGGCTTGACATGTCC 58.920 52.381 22.85 8.30 31.71 4.02
6477 7296 1.534595 CTGCTTCTTTCAGGTCAGCAC 59.465 52.381 0.00 0.00 35.56 4.40
6478 7297 1.141657 TGCTTCTTTCAGGTCAGCACT 59.858 47.619 0.00 0.00 35.56 4.40
6483 7302 4.890158 TCTTTCAGGTCAGCACTGATTA 57.110 40.909 3.24 0.00 43.82 1.75
6485 7304 3.334583 TTCAGGTCAGCACTGATTACC 57.665 47.619 3.24 1.38 43.82 2.85
6514 7333 4.514577 ACCTCGGCGGCATTCTCG 62.515 66.667 10.53 0.00 35.61 4.04
6564 7383 0.176449 CAGATGATCGCCACTCACCA 59.824 55.000 0.00 0.00 0.00 4.17
6650 7475 0.820871 GTCGATCCAGCAGGTTCTCT 59.179 55.000 4.87 0.00 35.89 3.10
6657 7482 0.795085 CAGCAGGTTCTCTCTTTGCG 59.205 55.000 0.00 0.00 39.63 4.85
6660 7485 1.229428 CAGGTTCTCTCTTTGCGCAA 58.771 50.000 21.02 21.02 0.00 4.85
6701 7529 1.268899 AGAAGTGTCAGCAAATGCAGC 59.731 47.619 8.28 0.00 45.16 5.25
6718 7546 2.224233 GCAGCCATCTTAGCTCTGATCA 60.224 50.000 0.00 0.00 38.95 2.92
6719 7547 3.557475 GCAGCCATCTTAGCTCTGATCAT 60.557 47.826 0.00 0.00 38.95 2.45
6721 7549 5.791666 CAGCCATCTTAGCTCTGATCATAA 58.208 41.667 0.00 0.00 38.95 1.90
6723 7551 7.554211 CAGCCATCTTAGCTCTGATCATAATA 58.446 38.462 0.00 0.00 38.95 0.98
6726 7554 7.821359 GCCATCTTAGCTCTGATCATAATAACA 59.179 37.037 0.00 0.00 0.00 2.41
6727 7555 9.716531 CCATCTTAGCTCTGATCATAATAACAA 57.283 33.333 0.00 0.00 0.00 2.83
6730 7558 9.755804 TCTTAGCTCTGATCATAATAACAACTG 57.244 33.333 0.00 0.00 0.00 3.16
6731 7559 6.857777 AGCTCTGATCATAATAACAACTGC 57.142 37.500 0.00 0.00 0.00 4.40
6732 7560 6.590068 AGCTCTGATCATAATAACAACTGCT 58.410 36.000 0.00 0.00 0.00 4.24
6811 7639 2.034879 GCAGCAGTACATGTGCGGT 61.035 57.895 14.72 9.63 46.06 5.68
7074 7908 2.280052 GATGGAGCTCCTCTGCGC 60.280 66.667 32.28 11.96 35.70 6.09
7145 7979 1.268352 GGCTGATCTAGTAGTGGCGAG 59.732 57.143 0.00 0.00 0.00 5.03
7150 7991 1.380524 TCTAGTAGTGGCGAGTGAGC 58.619 55.000 0.00 0.00 0.00 4.26
7196 8038 1.328430 AAAGGAGATCGTCGGTCCCC 61.328 60.000 0.82 0.00 0.00 4.81
7255 8099 7.615582 TGGTTCTGAGAAAATTATAGCAGTG 57.384 36.000 0.00 0.00 0.00 3.66
7270 8114 2.368548 AGCAGTGGTGTGATGTGACTTA 59.631 45.455 0.00 0.00 0.00 2.24
7464 8311 5.294734 AGAATTGAAGGGTGTTTGCAAAT 57.705 34.783 16.21 0.00 0.00 2.32
7466 8313 7.008021 AGAATTGAAGGGTGTTTGCAAATAT 57.992 32.000 16.21 0.00 0.00 1.28
7468 8315 8.761689 AGAATTGAAGGGTGTTTGCAAATATAT 58.238 29.630 16.21 0.06 0.00 0.86
7474 8321 7.219484 AGGGTGTTTGCAAATATATCTATGC 57.781 36.000 16.21 9.85 39.22 3.14
7477 8325 8.143835 GGGTGTTTGCAAATATATCTATGCTTT 58.856 33.333 16.21 0.00 39.49 3.51
7501 8349 1.242989 TGCCTAAAAACATCGCAGCA 58.757 45.000 0.00 0.00 0.00 4.41
7504 8352 2.584791 CCTAAAAACATCGCAGCACAC 58.415 47.619 0.00 0.00 0.00 3.82
7505 8353 2.031245 CCTAAAAACATCGCAGCACACA 60.031 45.455 0.00 0.00 0.00 3.72
7507 8355 2.336554 AAAACATCGCAGCACACATC 57.663 45.000 0.00 0.00 0.00 3.06
7512 8360 2.094026 ACATCGCAGCACACATCTTCTA 60.094 45.455 0.00 0.00 0.00 2.10
7536 8384 2.851263 ACCCACTGAATCGCTAACAA 57.149 45.000 0.00 0.00 0.00 2.83
7547 8395 6.212235 TGAATCGCTAACAATTTGCAAAAGA 58.788 32.000 17.19 6.26 0.00 2.52
7548 8396 6.867816 TGAATCGCTAACAATTTGCAAAAGAT 59.132 30.769 17.19 9.22 0.00 2.40
7553 8401 5.164061 GCTAACAATTTGCAAAAGATCACCG 60.164 40.000 17.19 2.56 0.00 4.94
7554 8402 3.059166 ACAATTTGCAAAAGATCACCGC 58.941 40.909 17.19 0.00 0.00 5.68
7555 8403 2.368655 ATTTGCAAAAGATCACCGCC 57.631 45.000 17.19 0.00 0.00 6.13
7560 8408 2.288152 TGCAAAAGATCACCGCCTTTTC 60.288 45.455 0.00 0.00 39.69 2.29
7562 8410 3.552890 GCAAAAGATCACCGCCTTTTCTT 60.553 43.478 0.00 0.00 39.69 2.52
7598 8450 8.934023 TGGAACCACTAAAATCTTGATTAAGT 57.066 30.769 0.00 1.83 35.38 2.24
7631 8483 4.678256 AGGATAACTGAGAGTGAGACCAA 58.322 43.478 0.00 0.00 0.00 3.67
7634 8486 5.393678 GGATAACTGAGAGTGAGACCAAGTC 60.394 48.000 0.00 0.00 0.00 3.01
7636 8488 1.883275 CTGAGAGTGAGACCAAGTCGT 59.117 52.381 0.00 0.00 37.67 4.34
7639 8491 1.883275 AGAGTGAGACCAAGTCGTCAG 59.117 52.381 0.00 0.00 37.67 3.51
7647 8499 4.003788 AAGTCGTCAGGCCCACGG 62.004 66.667 21.44 6.50 37.85 4.94
7674 8533 3.429043 TCGTTAGACGACATTGCCC 57.571 52.632 0.00 0.00 46.73 5.36
7684 9910 3.877508 GACGACATTGCCCTTTAGCTATT 59.122 43.478 0.00 0.00 0.00 1.73
7686 9912 4.096382 ACGACATTGCCCTTTAGCTATTTG 59.904 41.667 0.00 0.00 0.00 2.32
7705 9931 1.591327 GCCCAACCAAACAGTTGCG 60.591 57.895 0.00 0.00 44.71 4.85
7706 9932 1.813192 CCCAACCAAACAGTTGCGT 59.187 52.632 0.00 0.00 44.71 5.24
7730 9976 0.466124 CCATCTTTCTCCTCGGTCCC 59.534 60.000 0.00 0.00 0.00 4.46
7731 9977 0.466124 CATCTTTCTCCTCGGTCCCC 59.534 60.000 0.00 0.00 0.00 4.81
7735 9981 0.614979 TTTCTCCTCGGTCCCCTCAG 60.615 60.000 0.00 0.00 0.00 3.35
7736 9982 1.801302 TTCTCCTCGGTCCCCTCAGT 61.801 60.000 0.00 0.00 0.00 3.41
7737 9983 1.305381 CTCCTCGGTCCCCTCAGTT 60.305 63.158 0.00 0.00 0.00 3.16
7745 9991 0.539986 GTCCCCTCAGTTATCGCCAA 59.460 55.000 0.00 0.00 0.00 4.52
7746 9992 1.141053 GTCCCCTCAGTTATCGCCAAT 59.859 52.381 0.00 0.00 0.00 3.16
7751 9997 1.792949 CTCAGTTATCGCCAATACCGC 59.207 52.381 0.00 0.00 0.00 5.68
7773 10019 3.774528 CTAGCAGGCTCGCCACCA 61.775 66.667 11.02 0.00 38.92 4.17
7774 10020 4.082523 TAGCAGGCTCGCCACCAC 62.083 66.667 11.02 0.00 38.92 4.16
7796 10042 3.636929 CTGCAACCATGGCCCCGTA 62.637 63.158 13.04 0.00 0.00 4.02
7803 10049 0.535102 CCATGGCCCCGTAGAATGAC 60.535 60.000 0.00 0.00 0.00 3.06
7824 10070 0.030638 GCGAGATGAGCTCAGAGTCC 59.969 60.000 22.96 8.43 44.15 3.85
7825 10071 0.667993 CGAGATGAGCTCAGAGTCCC 59.332 60.000 22.96 4.90 44.15 4.46
7827 10073 2.486370 CGAGATGAGCTCAGAGTCCCTA 60.486 54.545 22.96 0.00 44.15 3.53
7829 10075 3.295973 AGATGAGCTCAGAGTCCCTAAC 58.704 50.000 22.96 3.45 0.00 2.34
7840 10086 3.515286 CCCTAACGCCGCTCTCGA 61.515 66.667 0.00 0.00 38.10 4.04
7867 10113 4.515404 GCTACAAGCCCTACGTGG 57.485 61.111 0.00 0.00 34.48 4.94
7897 10143 4.295775 TCTGAACTAGGGTTAGGGTTCCTA 59.704 45.833 0.00 0.00 37.74 2.94
7904 10150 2.504585 GGGTTAGGGTTCCTAGAAGTGG 59.495 54.545 0.00 0.00 37.42 4.00
7906 10152 1.875488 TAGGGTTCCTAGAAGTGGGC 58.125 55.000 0.00 0.00 34.61 5.36
7912 10158 3.444034 GGTTCCTAGAAGTGGGCATTTTC 59.556 47.826 0.00 0.00 0.00 2.29
7914 10160 2.017049 CCTAGAAGTGGGCATTTTCCG 58.983 52.381 0.00 0.00 0.00 4.30
7924 10170 2.094026 GGGCATTTTCCGATTTGAGCTT 60.094 45.455 0.00 0.00 0.00 3.74
7935 10181 5.091431 CCGATTTGAGCTTTGATTTGACTC 58.909 41.667 0.00 0.00 0.00 3.36
7965 10211 3.862267 TGATTTTTGTTGCTTGTTCGTGG 59.138 39.130 0.00 0.00 0.00 4.94
7967 10213 4.436242 TTTTTGTTGCTTGTTCGTGGTA 57.564 36.364 0.00 0.00 0.00 3.25
7978 10224 5.178809 GCTTGTTCGTGGTATTTTAGTGTCT 59.821 40.000 0.00 0.00 0.00 3.41
7988 10234 5.063060 GGTATTTTAGTGTCTAGCCACAACG 59.937 44.000 6.69 0.00 37.82 4.10
7993 10239 1.067142 GTGTCTAGCCACAACGGATGA 60.067 52.381 0.00 0.00 36.56 2.92
8024 10270 0.176449 GTGGTGTGGGTACGGGATAC 59.824 60.000 0.00 0.00 0.00 2.24
8045 10291 4.693283 ACGTGCTTTGCATCTATAAGCTA 58.307 39.130 18.21 5.26 43.51 3.32
8046 10292 4.508124 ACGTGCTTTGCATCTATAAGCTAC 59.492 41.667 18.21 13.73 43.51 3.58
8049 10295 4.202212 TGCTTTGCATCTATAAGCTACCGA 60.202 41.667 18.21 0.00 43.51 4.69
8058 10304 2.634815 TAAGCTACCGACGGAGAGAT 57.365 50.000 23.38 13.15 0.00 2.75
8157 10403 3.056821 TCATTACTTCTGTGCACGTAGCT 60.057 43.478 13.13 0.00 45.94 3.32
8160 10406 1.273606 ACTTCTGTGCACGTAGCTCAT 59.726 47.619 13.13 0.00 44.81 2.90
8162 10408 3.056821 ACTTCTGTGCACGTAGCTCATTA 60.057 43.478 13.13 4.97 44.81 1.90
8163 10409 3.150848 TCTGTGCACGTAGCTCATTAG 57.849 47.619 13.13 0.00 44.81 1.73
8165 10411 2.600420 CTGTGCACGTAGCTCATTAGTG 59.400 50.000 13.13 0.00 44.81 2.74
8180 10426 6.344572 TCATTAGTGTTCATAATCGTGTGC 57.655 37.500 0.00 0.00 0.00 4.57
8218 10464 5.816449 TTAGTGTGCACATGGATATGTTG 57.184 39.130 24.69 0.00 45.01 3.33
8252 10498 9.030301 AGTACAATTGCTTTGTTTAATGTGTTC 57.970 29.630 5.05 0.00 46.51 3.18
8302 10548 6.732154 ACAAATGCTCATATGCACATAGTTC 58.268 36.000 9.78 0.00 46.33 3.01
8303 10549 6.319405 ACAAATGCTCATATGCACATAGTTCA 59.681 34.615 9.78 0.00 46.33 3.18
8304 10550 6.555812 AATGCTCATATGCACATAGTTCAG 57.444 37.500 9.78 0.00 46.33 3.02
8349 10595 4.705023 ACTAAAGACCAAGCTTTGTGTTGT 59.295 37.500 12.97 5.92 38.47 3.32
8350 10596 4.535526 AAAGACCAAGCTTTGTGTTGTT 57.464 36.364 12.97 0.00 36.77 2.83
8351 10597 4.535526 AAGACCAAGCTTTGTGTTGTTT 57.464 36.364 11.68 0.00 0.00 2.83
8352 10598 5.652994 AAGACCAAGCTTTGTGTTGTTTA 57.347 34.783 11.68 0.00 0.00 2.01
8353 10599 5.652994 AGACCAAGCTTTGTGTTGTTTAA 57.347 34.783 8.09 0.00 0.00 1.52
8354 10600 6.031751 AGACCAAGCTTTGTGTTGTTTAAA 57.968 33.333 8.09 0.00 0.00 1.52
8364 10610 7.279090 GCTTTGTGTTGTTTAAATAAGTGGGTT 59.721 33.333 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.878127 TCTTACTTACAATGTGAAAAGAGAGGG 59.122 37.037 0.00 0.00 0.00 4.30
27 28 7.201839 GGTCGGATGAACTCTTATCTTCTTACT 60.202 40.741 0.00 0.00 0.00 2.24
40 41 6.984474 TGATTAAGTAATGGTCGGATGAACTC 59.016 38.462 0.00 0.00 31.14 3.01
42 43 7.548196 TTGATTAAGTAATGGTCGGATGAAC 57.452 36.000 0.00 0.00 0.00 3.18
45 46 6.317642 TGGTTTGATTAAGTAATGGTCGGATG 59.682 38.462 0.00 0.00 0.00 3.51
49 50 6.972328 CCATTGGTTTGATTAAGTAATGGTCG 59.028 38.462 0.00 0.00 38.66 4.79
68 69 4.631131 TCGTAATAGATGTCAGCCATTGG 58.369 43.478 0.00 0.00 32.56 3.16
72 73 4.159693 AGTGTTCGTAATAGATGTCAGCCA 59.840 41.667 0.00 0.00 0.00 4.75
73 74 4.683832 AGTGTTCGTAATAGATGTCAGCC 58.316 43.478 0.00 0.00 0.00 4.85
77 78 7.705214 AGAGGTAAGTGTTCGTAATAGATGTC 58.295 38.462 0.00 0.00 0.00 3.06
79 80 6.851837 CGAGAGGTAAGTGTTCGTAATAGATG 59.148 42.308 0.00 0.00 0.00 2.90
87 88 1.952296 ACACGAGAGGTAAGTGTTCGT 59.048 47.619 0.00 0.00 45.60 3.85
88 89 2.031420 TCACACGAGAGGTAAGTGTTCG 60.031 50.000 0.00 0.00 45.60 3.95
89 90 3.637998 TCACACGAGAGGTAAGTGTTC 57.362 47.619 0.00 0.00 45.60 3.18
93 94 3.244112 CCCTTTTCACACGAGAGGTAAGT 60.244 47.826 0.00 0.00 0.00 2.24
94 95 3.326747 CCCTTTTCACACGAGAGGTAAG 58.673 50.000 0.00 0.00 0.00 2.34
98 99 0.685097 TCCCCTTTTCACACGAGAGG 59.315 55.000 0.00 0.00 0.00 3.69
115 116 1.544703 CTCCCTCCCTCCTACCTCC 59.455 68.421 0.00 0.00 0.00 4.30
116 117 1.298157 ACCTCCCTCCCTCCTACCTC 61.298 65.000 0.00 0.00 0.00 3.85
122 123 0.105401 CCTCTTACCTCCCTCCCTCC 60.105 65.000 0.00 0.00 0.00 4.30
127 128 1.133419 ACGATCCCTCTTACCTCCCTC 60.133 57.143 0.00 0.00 0.00 4.30
132 133 2.750141 TAGCACGATCCCTCTTACCT 57.250 50.000 0.00 0.00 0.00 3.08
133 134 3.814005 TTTAGCACGATCCCTCTTACC 57.186 47.619 0.00 0.00 0.00 2.85
135 136 5.047847 CGAATTTTAGCACGATCCCTCTTA 58.952 41.667 0.00 0.00 0.00 2.10
136 137 3.871594 CGAATTTTAGCACGATCCCTCTT 59.128 43.478 0.00 0.00 0.00 2.85
139 140 1.940613 GCGAATTTTAGCACGATCCCT 59.059 47.619 0.00 0.00 0.00 4.20
140 141 1.002792 GGCGAATTTTAGCACGATCCC 60.003 52.381 0.00 0.00 34.54 3.85
143 144 5.751243 ATAAAGGCGAATTTTAGCACGAT 57.249 34.783 0.00 0.00 34.54 3.73
144 145 5.122554 TCAATAAAGGCGAATTTTAGCACGA 59.877 36.000 0.00 0.00 34.54 4.35
145 146 5.227184 GTCAATAAAGGCGAATTTTAGCACG 59.773 40.000 0.00 0.00 34.54 5.34
146 147 6.322491 AGTCAATAAAGGCGAATTTTAGCAC 58.678 36.000 0.00 0.00 34.54 4.40
187 189 4.525912 ACATGACAAATTCTTGGGAAGC 57.474 40.909 0.00 0.00 36.82 3.86
188 190 6.282930 ACAAACATGACAAATTCTTGGGAAG 58.717 36.000 0.00 0.00 36.82 3.46
189 191 6.232581 ACAAACATGACAAATTCTTGGGAA 57.767 33.333 0.00 0.00 36.82 3.97
191 193 6.538021 TGAAACAAACATGACAAATTCTTGGG 59.462 34.615 0.00 0.00 36.82 4.12
194 196 6.811170 ACGTGAAACAAACATGACAAATTCTT 59.189 30.769 0.00 0.00 35.74 2.52
197 199 6.198216 GCTACGTGAAACAAACATGACAAATT 59.802 34.615 0.00 0.00 35.74 1.82
250 256 6.211584 AGACACTCAGGACATTGTAGTAACAT 59.788 38.462 0.00 0.00 34.97 2.71
270 276 4.047822 CAGTCAGTCAGAAACTCAGACAC 58.952 47.826 2.60 0.00 35.64 3.67
271 277 3.954258 TCAGTCAGTCAGAAACTCAGACA 59.046 43.478 2.60 0.00 35.64 3.41
364 382 0.179166 TTTACTACTGCGTACGGGCG 60.179 55.000 18.39 0.72 35.06 6.13
379 397 5.118817 CGAGACTGCCAGAGTTTAGTTTTAC 59.881 44.000 0.00 0.00 33.83 2.01
380 398 5.227908 CGAGACTGCCAGAGTTTAGTTTTA 58.772 41.667 0.00 0.00 33.83 1.52
381 399 4.058817 CGAGACTGCCAGAGTTTAGTTTT 58.941 43.478 0.00 0.00 33.83 2.43
431 449 3.062763 CGGCTGCGAGAAAAGATATGAT 58.937 45.455 0.00 0.00 0.00 2.45
464 482 8.557029 CGTTTTTGGTGAAGACTTTCTATTAGT 58.443 33.333 0.00 0.00 34.31 2.24
465 483 7.534239 GCGTTTTTGGTGAAGACTTTCTATTAG 59.466 37.037 0.00 0.00 34.31 1.73
466 484 7.357303 GCGTTTTTGGTGAAGACTTTCTATTA 58.643 34.615 0.00 0.00 34.31 0.98
541 563 0.188587 TGTCCAGTCCAGTCCAGTCT 59.811 55.000 0.00 0.00 0.00 3.24
542 564 0.605589 CTGTCCAGTCCAGTCCAGTC 59.394 60.000 0.00 0.00 0.00 3.51
543 565 0.833834 CCTGTCCAGTCCAGTCCAGT 60.834 60.000 0.00 0.00 0.00 4.00
544 566 1.548357 CCCTGTCCAGTCCAGTCCAG 61.548 65.000 0.00 0.00 0.00 3.86
545 567 1.536418 CCCTGTCCAGTCCAGTCCA 60.536 63.158 0.00 0.00 0.00 4.02
576 602 4.157958 GAGACGGACGGACGGACG 62.158 72.222 6.00 8.35 38.39 4.79
577 603 3.808656 GGAGACGGACGGACGGAC 61.809 72.222 6.00 0.32 38.39 4.79
626 675 0.100682 TCGTAGCGCTGTCTTCATCC 59.899 55.000 22.90 0.00 0.00 3.51
628 677 0.526524 GCTCGTAGCGCTGTCTTCAT 60.527 55.000 22.90 0.00 34.18 2.57
630 679 1.874466 GGCTCGTAGCGCTGTCTTC 60.874 63.158 22.90 6.21 43.62 2.87
631 680 1.030488 TAGGCTCGTAGCGCTGTCTT 61.030 55.000 22.90 3.22 43.62 3.01
632 681 1.440938 CTAGGCTCGTAGCGCTGTCT 61.441 60.000 22.90 12.89 43.62 3.41
633 682 1.009449 CTAGGCTCGTAGCGCTGTC 60.009 63.158 22.90 12.28 43.62 3.51
634 683 3.111939 CTAGGCTCGTAGCGCTGT 58.888 61.111 22.90 0.00 43.62 4.40
635 684 2.354072 GCTAGGCTCGTAGCGCTG 60.354 66.667 22.90 3.79 43.62 5.18
636 685 3.597728 GGCTAGGCTCGTAGCGCT 61.598 66.667 17.26 17.26 45.56 5.92
637 686 3.426117 TTGGCTAGGCTCGTAGCGC 62.426 63.158 18.18 0.00 45.56 5.92
638 687 1.589196 GTTGGCTAGGCTCGTAGCG 60.589 63.158 18.18 0.00 45.56 4.26
639 688 1.589196 CGTTGGCTAGGCTCGTAGC 60.589 63.158 18.18 11.83 44.14 3.58
640 689 0.029567 CTCGTTGGCTAGGCTCGTAG 59.970 60.000 24.05 18.34 0.00 3.51
641 690 0.393402 TCTCGTTGGCTAGGCTCGTA 60.393 55.000 24.05 15.61 0.00 3.43
642 691 1.658686 CTCTCGTTGGCTAGGCTCGT 61.659 60.000 24.05 0.00 0.00 4.18
643 692 1.064946 CTCTCGTTGGCTAGGCTCG 59.935 63.158 18.18 19.97 0.00 5.03
644 693 0.383949 CTCTCTCGTTGGCTAGGCTC 59.616 60.000 18.18 9.59 0.00 4.70
645 694 1.040339 CCTCTCTCGTTGGCTAGGCT 61.040 60.000 18.18 0.00 0.00 4.58
646 695 1.038130 TCCTCTCTCGTTGGCTAGGC 61.038 60.000 9.85 9.85 0.00 3.93
647 696 1.698506 ATCCTCTCTCGTTGGCTAGG 58.301 55.000 0.00 0.00 0.00 3.02
648 697 3.810310 AAATCCTCTCTCGTTGGCTAG 57.190 47.619 0.00 0.00 0.00 3.42
649 698 6.016192 CACTATAAATCCTCTCTCGTTGGCTA 60.016 42.308 0.00 0.00 0.00 3.93
654 703 5.536916 CCCTCACTATAAATCCTCTCTCGTT 59.463 44.000 0.00 0.00 0.00 3.85
792 876 1.416013 GGATTATGGTCTGGAGGGGGA 60.416 57.143 0.00 0.00 0.00 4.81
820 904 0.686769 GGAGGAAGAAGGGAGCGGTA 60.687 60.000 0.00 0.00 0.00 4.02
828 912 1.944177 TGTCTGGAGGAGGAAGAAGG 58.056 55.000 0.00 0.00 0.00 3.46
829 913 2.354604 GCTTGTCTGGAGGAGGAAGAAG 60.355 54.545 0.00 0.00 0.00 2.85
863 947 1.880675 AGCGATATCTGTCTGGTACGG 59.119 52.381 0.34 0.00 35.61 4.02
864 948 2.411676 CGAGCGATATCTGTCTGGTACG 60.412 54.545 0.34 0.00 0.00 3.67
865 949 2.666069 GCGAGCGATATCTGTCTGGTAC 60.666 54.545 0.34 0.00 0.00 3.34
866 950 1.535896 GCGAGCGATATCTGTCTGGTA 59.464 52.381 0.34 0.00 0.00 3.25
868 952 0.595588 AGCGAGCGATATCTGTCTGG 59.404 55.000 0.34 0.00 0.00 3.86
869 953 1.535028 AGAGCGAGCGATATCTGTCTG 59.465 52.381 0.34 0.00 0.00 3.51
870 954 1.535028 CAGAGCGAGCGATATCTGTCT 59.465 52.381 0.34 0.00 35.52 3.41
871 955 1.962412 CAGAGCGAGCGATATCTGTC 58.038 55.000 0.34 0.00 35.52 3.51
872 956 1.313772 ACAGAGCGAGCGATATCTGT 58.686 50.000 15.33 15.33 45.69 3.41
873 957 2.315011 GAACAGAGCGAGCGATATCTG 58.685 52.381 14.40 14.40 43.81 2.90
877 961 0.663688 GAGGAACAGAGCGAGCGATA 59.336 55.000 0.00 0.00 0.00 2.92
887 971 0.411452 AGCAGAGGAGGAGGAACAGA 59.589 55.000 0.00 0.00 0.00 3.41
890 974 1.813192 CGAGCAGAGGAGGAGGAAC 59.187 63.158 0.00 0.00 0.00 3.62
894 978 3.535962 GGGCGAGCAGAGGAGGAG 61.536 72.222 0.00 0.00 0.00 3.69
911 995 1.206849 GTGCTGGAGAGGAGGAAGAAG 59.793 57.143 0.00 0.00 0.00 2.85
940 1024 4.688419 CGGCGGCAACAACAGCTG 62.688 66.667 13.48 13.48 41.29 4.24
959 1064 3.798954 GAGCAGAATCCTCCCCGCG 62.799 68.421 0.00 0.00 0.00 6.46
962 1067 2.825264 CGGAGCAGAATCCTCCCC 59.175 66.667 2.13 0.00 44.86 4.81
1058 1193 3.998341 GCAGGAAACACGAACCAACTATA 59.002 43.478 0.00 0.00 0.00 1.31
1059 1194 2.812011 GCAGGAAACACGAACCAACTAT 59.188 45.455 0.00 0.00 0.00 2.12
1060 1195 2.215196 GCAGGAAACACGAACCAACTA 58.785 47.619 0.00 0.00 0.00 2.24
1085 1220 2.171870 AGTGGAGGAAAGAAACGGAACA 59.828 45.455 0.00 0.00 0.00 3.18
1174 1313 0.107848 AACGCGGGGTTTATCCTGAG 60.108 55.000 12.47 0.00 34.41 3.35
1243 1393 4.112341 GGACGTCGACGGGGACAG 62.112 72.222 37.89 12.57 44.95 3.51
1246 1396 4.746309 ATGGGACGTCGACGGGGA 62.746 66.667 37.89 20.84 44.95 4.81
1248 1398 3.445687 TGATGGGACGTCGACGGG 61.446 66.667 37.89 15.57 44.95 5.28
1249 1399 2.202570 GTGATGGGACGTCGACGG 60.203 66.667 37.89 21.83 44.95 4.79
1252 1402 4.124351 GCGGTGATGGGACGTCGA 62.124 66.667 9.92 0.00 0.00 4.20
1260 1410 0.394216 TGGGAGAAATGCGGTGATGG 60.394 55.000 0.00 0.00 0.00 3.51
1297 1449 1.569708 GGAAATCTCTGCTCTGCTCG 58.430 55.000 0.00 0.00 0.00 5.03
1306 1458 7.886629 TTAATGAAGGATTGGGAAATCTCTG 57.113 36.000 0.00 0.00 0.00 3.35
1307 1459 7.508296 CCATTAATGAAGGATTGGGAAATCTCT 59.492 37.037 17.23 0.00 0.00 3.10
1308 1460 7.664758 CCATTAATGAAGGATTGGGAAATCTC 58.335 38.462 17.23 0.00 0.00 2.75
1309 1461 6.042437 GCCATTAATGAAGGATTGGGAAATCT 59.958 38.462 17.23 0.00 0.00 2.40
1315 1467 3.221771 TCGCCATTAATGAAGGATTGGG 58.778 45.455 17.23 6.67 0.00 4.12
1350 1502 6.362820 GCTTAATTCTTCCGAGTAATACTCCG 59.637 42.308 14.17 8.42 42.12 4.63
1375 1527 1.863624 GCGGAAATCTCTCTCTGCTCG 60.864 57.143 0.00 0.00 40.22 5.03
1435 1595 2.031516 GGCAGCGATCGATCCATGG 61.032 63.158 21.57 4.97 0.00 3.66
1436 1596 1.005275 AGGCAGCGATCGATCCATG 60.005 57.895 21.57 17.76 0.00 3.66
1542 1726 0.250814 AACGAAACCCGGCCATGTAA 60.251 50.000 2.24 0.00 43.93 2.41
1699 1919 4.810191 AAGATTGGGCGGATAGATAGAC 57.190 45.455 0.00 0.00 0.00 2.59
1705 1925 2.880890 CAGGAAAAGATTGGGCGGATAG 59.119 50.000 0.00 0.00 0.00 2.08
1706 1926 2.507886 TCAGGAAAAGATTGGGCGGATA 59.492 45.455 0.00 0.00 0.00 2.59
1707 1927 1.284785 TCAGGAAAAGATTGGGCGGAT 59.715 47.619 0.00 0.00 0.00 4.18
1708 1928 0.695924 TCAGGAAAAGATTGGGCGGA 59.304 50.000 0.00 0.00 0.00 5.54
1722 1946 3.159213 ACAATGGAAGCAACATCAGGA 57.841 42.857 0.00 0.00 0.00 3.86
1779 2005 1.990060 GGTAGCCTGCCTGGACTGA 60.990 63.158 0.00 0.00 38.35 3.41
1796 2022 1.138247 GTCGCCGTAGTAGTGGTGG 59.862 63.158 2.87 0.00 36.41 4.61
1821 2058 3.227810 AGCAGCGGTTGTACTACTTAC 57.772 47.619 7.38 0.00 0.00 2.34
1822 2059 3.379372 CCTAGCAGCGGTTGTACTACTTA 59.621 47.826 7.38 0.00 0.00 2.24
1823 2060 2.165845 CCTAGCAGCGGTTGTACTACTT 59.834 50.000 7.38 0.00 0.00 2.24
1824 2061 1.749634 CCTAGCAGCGGTTGTACTACT 59.250 52.381 7.38 0.00 0.00 2.57
1876 2116 8.204160 ACTTTGTTTCTTTTTCTTTATGGGAGG 58.796 33.333 0.00 0.00 0.00 4.30
1994 2237 1.590147 CCCACACCTACACGGAGAC 59.410 63.158 0.00 0.00 36.31 3.36
1995 2238 1.608336 CCCCACACCTACACGGAGA 60.608 63.158 0.00 0.00 36.31 3.71
2011 2254 4.835284 ACAAATCCTCTTTCTCTCTCCC 57.165 45.455 0.00 0.00 0.00 4.30
2038 2281 2.232208 CACCATCCAAAAAGGCTTCTCC 59.768 50.000 0.00 0.00 37.29 3.71
2039 2282 2.232208 CCACCATCCAAAAAGGCTTCTC 59.768 50.000 0.00 0.00 37.29 2.87
2040 2283 2.250924 CCACCATCCAAAAAGGCTTCT 58.749 47.619 0.00 0.00 37.29 2.85
2041 2284 1.970640 ACCACCATCCAAAAAGGCTTC 59.029 47.619 0.00 0.00 37.29 3.86
2042 2285 1.693606 CACCACCATCCAAAAAGGCTT 59.306 47.619 0.00 0.00 37.29 4.35
2043 2286 1.341080 CACCACCATCCAAAAAGGCT 58.659 50.000 0.00 0.00 37.29 4.58
2044 2287 0.321346 CCACCACCATCCAAAAAGGC 59.679 55.000 0.00 0.00 37.29 4.35
2045 2288 2.008242 TCCACCACCATCCAAAAAGG 57.992 50.000 0.00 0.00 39.47 3.11
2074 2325 3.984186 CTTCTCCCTCCGGCCCTCA 62.984 68.421 0.00 0.00 0.00 3.86
2126 2377 2.581354 GCTCCTCATCACGTGCCT 59.419 61.111 11.67 0.00 0.00 4.75
2137 2388 4.539881 GACGACGAGCCGCTCCTC 62.540 72.222 14.85 11.51 0.00 3.71
2149 2400 1.820481 CGAGGAGGAGGAGGACGAC 60.820 68.421 0.00 0.00 0.00 4.34
2227 2487 2.386779 TGAGATGAGAGAGGAAGCTGG 58.613 52.381 0.00 0.00 0.00 4.85
2301 2571 3.696051 AGAAAGCAGCAGAGTTTGTTCAA 59.304 39.130 0.00 0.00 0.00 2.69
2401 2677 1.277557 CCTCCTCCAGAGAACACAAGG 59.722 57.143 0.00 0.00 46.50 3.61
2408 2684 1.623557 CCATCCACCTCCTCCAGAGAA 60.624 57.143 0.00 0.00 46.50 2.87
2419 2695 2.156098 ACCAGCACACCATCCACCT 61.156 57.895 0.00 0.00 0.00 4.00
2449 2725 3.555795 CCACACTGATCTGTTGTAGCAGT 60.556 47.826 1.95 0.00 40.17 4.40
2454 2730 1.696884 TGGCCACACTGATCTGTTGTA 59.303 47.619 0.00 0.00 0.00 2.41
2456 2732 1.162698 CTGGCCACACTGATCTGTTG 58.837 55.000 0.00 5.46 0.00 3.33
2485 2762 8.817100 CAAGAAAAGAACCTTAAAACCAATCAC 58.183 33.333 0.00 0.00 0.00 3.06
2486 2763 7.984617 CCAAGAAAAGAACCTTAAAACCAATCA 59.015 33.333 0.00 0.00 0.00 2.57
2583 2874 0.322322 CCCCAAAGTACACGGTGCTA 59.678 55.000 8.30 0.00 0.00 3.49
2639 2941 1.228033 GCCGTTTGGTGGTACTGGT 60.228 57.895 0.00 0.00 37.67 4.00
2644 2946 0.752009 TTGCTTGCCGTTTGGTGGTA 60.752 50.000 0.00 0.00 37.67 3.25
2651 2957 2.365293 AGGAGAATTTTGCTTGCCGTTT 59.635 40.909 0.00 0.00 0.00 3.60
2660 2966 2.159407 GCAGAGCTGAGGAGAATTTTGC 60.159 50.000 0.85 0.00 0.00 3.68
2672 2978 1.276138 TCGATTTGGAAGCAGAGCTGA 59.724 47.619 0.85 0.00 39.62 4.26
2677 2983 3.691118 CAGGAAATCGATTTGGAAGCAGA 59.309 43.478 27.27 0.00 0.00 4.26
2727 3033 1.202794 TGTGCAAGCTCAGTTCCATCA 60.203 47.619 0.00 0.00 0.00 3.07
2728 3034 1.527034 TGTGCAAGCTCAGTTCCATC 58.473 50.000 0.00 0.00 0.00 3.51
2741 3317 3.134442 AGCTTCTTCCCAAAATTGTGCAA 59.866 39.130 0.00 0.00 0.00 4.08
2761 3343 5.280266 GGAGATAGAGGGGAAAAAGGATAGC 60.280 48.000 0.00 0.00 0.00 2.97
2772 3354 1.436179 CCGAGGGGAGATAGAGGGGA 61.436 65.000 0.00 0.00 34.06 4.81
2790 3373 3.485346 TTCCTTGTGGCCGGTGACC 62.485 63.158 1.90 0.00 0.00 4.02
2791 3374 2.112297 TTCCTTGTGGCCGGTGAC 59.888 61.111 1.90 0.00 0.00 3.67
2855 3439 1.631388 TCCACCTAATCGGAAAAGGCA 59.369 47.619 8.48 0.00 36.31 4.75
2880 3464 4.674281 ATTTCTTCACGGAGGAGGATAC 57.326 45.455 0.00 0.00 0.00 2.24
2881 3465 5.396436 GGAAATTTCTTCACGGAGGAGGATA 60.396 44.000 17.42 0.00 0.00 2.59
2882 3466 4.518249 GAAATTTCTTCACGGAGGAGGAT 58.482 43.478 11.05 0.00 0.00 3.24
2906 3495 2.072298 GCAAGCATCACGATATCTCCC 58.928 52.381 0.34 0.00 0.00 4.30
3074 3686 1.202211 CGTCCGTTGATACACATCCGA 60.202 52.381 0.00 0.00 0.00 4.55
3075 3687 1.197055 CGTCCGTTGATACACATCCG 58.803 55.000 0.00 0.00 0.00 4.18
3138 3769 3.878103 CTCTAGAAAGCACTAGTAGCCGA 59.122 47.826 11.98 2.44 40.26 5.54
3139 3770 3.628487 ACTCTAGAAAGCACTAGTAGCCG 59.372 47.826 11.98 0.00 40.26 5.52
3141 3772 4.037089 GGGACTCTAGAAAGCACTAGTAGC 59.963 50.000 0.00 1.88 40.26 3.58
3142 3773 5.442391 AGGGACTCTAGAAAGCACTAGTAG 58.558 45.833 0.00 0.00 40.26 2.57
3143 3774 5.453866 AGGGACTCTAGAAAGCACTAGTA 57.546 43.478 0.00 0.00 40.26 1.82
3144 3775 4.325084 AGGGACTCTAGAAAGCACTAGT 57.675 45.455 0.00 0.00 40.26 2.57
3145 3776 4.707448 TCAAGGGACTCTAGAAAGCACTAG 59.293 45.833 0.00 0.00 38.49 2.57
3146 3777 4.673968 TCAAGGGACTCTAGAAAGCACTA 58.326 43.478 0.00 0.00 38.49 2.74
3150 3781 3.767131 ACTCTCAAGGGACTCTAGAAAGC 59.233 47.826 0.00 0.00 38.49 3.51
3263 3895 0.402121 ACAGGAGAAGAAAGCACCCC 59.598 55.000 0.00 0.00 0.00 4.95
3317 3950 2.440409 CCAGGATAACAGCAGCAAAGT 58.560 47.619 0.00 0.00 0.00 2.66
3348 3984 5.230182 CCTAACTGAATCAACCAAAAAGGC 58.770 41.667 0.00 0.00 43.14 4.35
3351 3987 4.651503 TGCCCTAACTGAATCAACCAAAAA 59.348 37.500 0.00 0.00 0.00 1.94
3373 4009 3.866582 GCCGGTGGGGGAGAGATG 61.867 72.222 1.90 0.00 35.78 2.90
3430 4066 4.142049 ACCAGAGCAGTAAGACTTCTATGC 60.142 45.833 9.90 9.90 31.06 3.14
3433 4069 4.924625 AGACCAGAGCAGTAAGACTTCTA 58.075 43.478 0.00 0.00 0.00 2.10
3435 4071 4.219725 AGAAGACCAGAGCAGTAAGACTTC 59.780 45.833 0.00 0.00 33.74 3.01
3443 4079 2.825532 GAGAAGAGAAGACCAGAGCAGT 59.174 50.000 0.00 0.00 0.00 4.40
3457 4093 5.889219 TGAAGTTCAGATGATCGAGAAGAG 58.111 41.667 0.08 0.00 0.00 2.85
3471 4107 3.571401 ACTTCCTTTGGCATGAAGTTCAG 59.429 43.478 16.96 5.01 44.63 3.02
3522 4261 7.645058 AGACAGAGAAAACAAAAGAAATCCA 57.355 32.000 0.00 0.00 0.00 3.41
3586 4325 4.330250 ACTGCCGTACTTCTAGTACTTGA 58.670 43.478 0.00 0.65 46.68 3.02
3706 4454 4.856607 CCGCCCTCGCTCTCGTTC 62.857 72.222 0.00 0.00 36.96 3.95
3760 4508 0.178961 ACTTCAGGGGCTTGGGTTTC 60.179 55.000 0.00 0.00 0.00 2.78
3890 4638 2.513435 GCTGCTGCTAGGAGTGGC 60.513 66.667 13.28 12.92 35.94 5.01
3988 4736 9.185192 GGGAATAAATAAAATGAATGAGCTTCG 57.815 33.333 0.00 0.00 36.60 3.79
4004 4752 9.225436 GCCTTTTTCATTGTTTGGGAATAAATA 57.775 29.630 0.00 0.00 0.00 1.40
4005 4753 7.944000 AGCCTTTTTCATTGTTTGGGAATAAAT 59.056 29.630 0.00 0.00 0.00 1.40
4021 4769 3.960102 ACCAAATGAGTGAGCCTTTTTCA 59.040 39.130 0.00 0.00 0.00 2.69
4030 4779 7.651808 ACAAATACAGAAACCAAATGAGTGAG 58.348 34.615 0.00 0.00 0.00 3.51
4031 4780 7.581213 ACAAATACAGAAACCAAATGAGTGA 57.419 32.000 0.00 0.00 0.00 3.41
4042 4792 5.060446 GCCGTGCATAAACAAATACAGAAAC 59.940 40.000 0.00 0.00 0.00 2.78
4043 4793 5.048364 AGCCGTGCATAAACAAATACAGAAA 60.048 36.000 0.00 0.00 0.00 2.52
4045 4795 4.006989 AGCCGTGCATAAACAAATACAGA 58.993 39.130 0.00 0.00 0.00 3.41
4076 4826 5.872070 ACCTTTGAATTTGCAAGACGAAAAA 59.128 32.000 0.00 0.00 0.00 1.94
4084 4834 2.803956 CAGCCACCTTTGAATTTGCAAG 59.196 45.455 0.00 0.00 0.00 4.01
4367 5125 5.368145 TCACATCAATAGTACATTCAGGGC 58.632 41.667 0.00 0.00 0.00 5.19
4483 5241 6.627087 AGAAGACCCAGAATTGAGATGTAA 57.373 37.500 0.00 0.00 0.00 2.41
4484 5242 6.897966 AGTAGAAGACCCAGAATTGAGATGTA 59.102 38.462 0.00 0.00 0.00 2.29
4485 5243 5.723887 AGTAGAAGACCCAGAATTGAGATGT 59.276 40.000 0.00 0.00 0.00 3.06
4486 5244 6.232581 AGTAGAAGACCCAGAATTGAGATG 57.767 41.667 0.00 0.00 0.00 2.90
4487 5245 6.882768 AAGTAGAAGACCCAGAATTGAGAT 57.117 37.500 0.00 0.00 0.00 2.75
4488 5246 6.270000 TGAAAGTAGAAGACCCAGAATTGAGA 59.730 38.462 0.00 0.00 0.00 3.27
4489 5247 6.467677 TGAAAGTAGAAGACCCAGAATTGAG 58.532 40.000 0.00 0.00 0.00 3.02
4490 5248 6.433847 TGAAAGTAGAAGACCCAGAATTGA 57.566 37.500 0.00 0.00 0.00 2.57
4491 5249 5.123027 GCTGAAAGTAGAAGACCCAGAATTG 59.877 44.000 0.00 0.00 35.30 2.32
4492 5250 5.249420 GCTGAAAGTAGAAGACCCAGAATT 58.751 41.667 0.00 0.00 35.30 2.17
4493 5251 4.323868 GGCTGAAAGTAGAAGACCCAGAAT 60.324 45.833 0.00 0.00 35.30 2.40
4494 5252 3.008049 GGCTGAAAGTAGAAGACCCAGAA 59.992 47.826 0.00 0.00 35.30 3.02
4495 5253 2.567615 GGCTGAAAGTAGAAGACCCAGA 59.432 50.000 0.00 0.00 35.30 3.86
4496 5254 2.303022 TGGCTGAAAGTAGAAGACCCAG 59.697 50.000 0.00 0.00 35.30 4.45
4497 5255 2.334977 TGGCTGAAAGTAGAAGACCCA 58.665 47.619 0.00 0.00 35.30 4.51
4498 5256 3.636153 ATGGCTGAAAGTAGAAGACCC 57.364 47.619 0.00 0.00 35.30 4.46
4499 5257 6.349300 TGATTATGGCTGAAAGTAGAAGACC 58.651 40.000 0.00 0.00 35.30 3.85
4500 5258 7.466590 GCTTGATTATGGCTGAAAGTAGAAGAC 60.467 40.741 0.00 0.00 35.30 3.01
4501 5259 6.540189 GCTTGATTATGGCTGAAAGTAGAAGA 59.460 38.462 0.00 0.00 35.30 2.87
4502 5260 6.510799 CGCTTGATTATGGCTGAAAGTAGAAG 60.511 42.308 0.00 0.00 35.30 2.85
4503 5261 5.294306 CGCTTGATTATGGCTGAAAGTAGAA 59.706 40.000 0.00 0.00 35.30 2.10
4504 5262 4.811024 CGCTTGATTATGGCTGAAAGTAGA 59.189 41.667 0.00 0.00 35.30 2.59
4505 5263 4.553547 GCGCTTGATTATGGCTGAAAGTAG 60.554 45.833 0.00 0.00 35.30 2.57
4506 5264 3.312421 GCGCTTGATTATGGCTGAAAGTA 59.688 43.478 0.00 0.00 35.30 2.24
4827 5595 7.411157 GCAACATTTGTGTTTGAGATATCTTGC 60.411 37.037 6.70 3.74 0.00 4.01
4828 5596 7.062605 GGCAACATTTGTGTTTGAGATATCTTG 59.937 37.037 6.70 0.00 0.00 3.02
4926 5694 6.017934 CAGCATGTTACTCAAACTGTACAACT 60.018 38.462 0.00 0.00 38.99 3.16
4981 5749 2.968574 GTCATCCTCCTTGATAGCTCCA 59.031 50.000 0.00 0.00 0.00 3.86
5147 5915 3.455910 TGTATCTGTCCATCTTTGGGAGG 59.544 47.826 0.00 0.00 43.81 4.30
5148 5916 4.444022 CCTGTATCTGTCCATCTTTGGGAG 60.444 50.000 0.00 0.00 43.81 4.30
5161 5929 4.263506 CCCAAAGAAAGGTCCTGTATCTGT 60.264 45.833 0.00 0.00 0.00 3.41
5162 5930 4.019321 TCCCAAAGAAAGGTCCTGTATCTG 60.019 45.833 0.00 0.00 0.00 2.90
5224 5992 4.824479 AGCAATTCCCCACCTTTTATTG 57.176 40.909 0.00 0.00 0.00 1.90
5254 6022 3.198853 GGCAAGGTAAGAGAACTGAGGAT 59.801 47.826 0.00 0.00 0.00 3.24
5260 6028 6.067217 ACATTATGGCAAGGTAAGAGAACT 57.933 37.500 0.00 0.00 0.00 3.01
5338 6106 5.725362 AGACTTAGACTACCATCAAACTGC 58.275 41.667 0.00 0.00 0.00 4.40
5384 6152 0.543749 AATACCAGCCAGTGAGGAGC 59.456 55.000 0.00 0.00 41.22 4.70
5412 6180 5.435557 CAGTACTTTCAGAGAGCAAAAACG 58.564 41.667 0.00 0.00 0.00 3.60
5413 6181 5.008118 AGCAGTACTTTCAGAGAGCAAAAAC 59.992 40.000 0.00 0.00 0.00 2.43
5436 6204 7.090173 ACATTCGGACAAAATGGAAATTACAG 58.910 34.615 0.00 0.00 38.23 2.74
5501 6269 3.925913 CCACAAAACCAGATTTATTGCGG 59.074 43.478 0.00 0.00 0.00 5.69
5596 6364 7.445900 TTTAGTAGAATCGCGTGTCATAAAG 57.554 36.000 5.77 0.00 0.00 1.85
5681 6450 1.077787 CCTGGATGGCAGGCGTAAA 60.078 57.895 0.00 0.00 32.53 2.01
5716 6485 5.485209 ACTTTTTCGAAGACCCAGTAGAT 57.515 39.130 0.00 0.00 34.32 1.98
5719 6488 6.165700 ACTTACTTTTTCGAAGACCCAGTA 57.834 37.500 0.00 0.00 34.32 2.74
5816 6585 0.324943 TGTACTTGAAGAGGGCCTGC 59.675 55.000 12.95 2.21 0.00 4.85
5932 6701 2.972021 AGTAGCAGGGCCAATTTGTTTT 59.028 40.909 6.18 0.00 0.00 2.43
5965 6734 4.876107 ACTTGGCTATGATTTTAGTGTCCG 59.124 41.667 0.00 0.00 0.00 4.79
6019 6821 4.662278 TGTACAGGAAAATCCTTTCAGGG 58.338 43.478 0.00 0.00 46.91 4.45
6046 6848 5.104982 TCAAAGGGTTCAAGCTCAACATTTT 60.105 36.000 9.96 7.05 0.00 1.82
6079 6888 5.064441 AGCTGTGAATAAAAAGGATGCAC 57.936 39.130 0.00 0.00 33.92 4.57
6124 6940 4.202398 ACTTCTCTTCCATGTCTTTGCAGA 60.202 41.667 0.00 0.00 0.00 4.26
6204 7020 6.325919 TGGGTGATTACTTGATTTTGTGAC 57.674 37.500 0.00 0.00 0.00 3.67
6266 7082 4.018506 TGCCATTCTTATTCAAGGTGGAGA 60.019 41.667 11.44 0.00 38.87 3.71
6288 7107 3.110139 CCCCCGTCGAAATGCATG 58.890 61.111 0.00 0.00 0.00 4.06
6304 7123 0.609406 GAAGGCTGAACTGGGTTCCC 60.609 60.000 7.77 0.12 41.35 3.97
6308 7127 1.482593 CGATAGAAGGCTGAACTGGGT 59.517 52.381 0.00 0.00 39.76 4.51
6373 7192 2.303175 GCCAATGGAAAGGCGGTTATA 58.697 47.619 2.05 0.00 41.70 0.98
6413 7232 4.392940 ACAGAATCACAGAAGAAACTGGG 58.607 43.478 0.00 0.00 42.04 4.45
6442 7261 0.959372 AGCAGCAGGACATGTCAAGC 60.959 55.000 26.47 25.95 0.00 4.01
6454 7273 1.805345 CTGACCTGAAAGAAGCAGCAG 59.195 52.381 0.00 0.00 34.07 4.24
6477 7296 2.749621 GTGGGCAAGTTCAGGTAATCAG 59.250 50.000 0.00 0.00 0.00 2.90
6478 7297 2.554344 GGTGGGCAAGTTCAGGTAATCA 60.554 50.000 0.00 0.00 0.00 2.57
6483 7302 1.456287 GAGGTGGGCAAGTTCAGGT 59.544 57.895 0.00 0.00 0.00 4.00
6485 7304 1.672356 CCGAGGTGGGCAAGTTCAG 60.672 63.158 0.00 0.00 0.00 3.02
6514 7333 0.328258 ACTGAACATACTGTGGCCCC 59.672 55.000 0.00 0.00 0.00 5.80
6538 7357 1.673665 GGCGATCATCTGGGGATGC 60.674 63.158 0.00 0.00 46.41 3.91
6650 7475 3.066621 AGTTCAGAAACATTGCGCAAAGA 59.933 39.130 29.93 14.67 37.88 2.52
6657 7482 9.677567 TCTATTTAACAAGTTCAGAAACATTGC 57.322 29.630 4.62 0.00 37.88 3.56
6701 7529 9.716531 TTGTTATTATGATCAGAGCTAAGATGG 57.283 33.333 0.09 0.00 0.00 3.51
6749 7577 5.221722 TGGCAAACAAGATCTAGTGAGACTT 60.222 40.000 0.00 0.00 33.41 3.01
6758 7586 3.126858 GCGACATTGGCAAACAAGATCTA 59.873 43.478 3.01 0.00 43.48 1.98
6852 7680 3.207669 GCTGGAGCTTCATGGCGG 61.208 66.667 0.00 0.00 38.21 6.13
7145 7979 2.921634 TCTACACATCACTCGCTCAC 57.078 50.000 0.00 0.00 0.00 3.51
7150 7991 8.689251 TTTCTTTAAGATCTACACATCACTCG 57.311 34.615 0.00 0.00 0.00 4.18
7196 8038 1.792057 CAAAGTAAACGCAGCGCCG 60.792 57.895 16.61 3.59 0.00 6.46
7255 8099 4.997395 ACAAGTCATAAGTCACATCACACC 59.003 41.667 0.00 0.00 0.00 4.16
7270 8114 1.002888 CCTCAGCCACTCACAAGTCAT 59.997 52.381 0.00 0.00 31.71 3.06
7301 8146 3.970640 TCACAGTTAAAATTTGCCCCCTT 59.029 39.130 0.00 0.00 0.00 3.95
7438 8285 5.076182 TGCAAACACCCTTCAATTCTATCA 58.924 37.500 0.00 0.00 0.00 2.15
7491 8339 1.081892 GAAGATGTGTGCTGCGATGT 58.918 50.000 0.00 0.00 0.00 3.06
7518 8366 4.414852 CAAATTGTTAGCGATTCAGTGGG 58.585 43.478 0.00 0.00 0.00 4.61
7523 8371 6.212235 TCTTTTGCAAATTGTTAGCGATTCA 58.788 32.000 13.65 0.00 0.00 2.57
7536 8384 1.895131 AGGCGGTGATCTTTTGCAAAT 59.105 42.857 13.65 0.00 0.00 2.32
7601 8453 9.035890 TCTCACTCTCAGTTATCCTATGAAAAA 57.964 33.333 0.00 0.00 0.00 1.94
7602 8454 8.470805 GTCTCACTCTCAGTTATCCTATGAAAA 58.529 37.037 0.00 0.00 0.00 2.29
7606 8458 5.830457 TGGTCTCACTCTCAGTTATCCTATG 59.170 44.000 0.00 0.00 0.00 2.23
7608 8460 5.452341 TGGTCTCACTCTCAGTTATCCTA 57.548 43.478 0.00 0.00 0.00 2.94
7610 8462 4.464597 ACTTGGTCTCACTCTCAGTTATCC 59.535 45.833 0.00 0.00 0.00 2.59
7620 8472 1.068194 CCTGACGACTTGGTCTCACTC 60.068 57.143 0.00 0.00 37.81 3.51
7622 8474 0.667792 GCCTGACGACTTGGTCTCAC 60.668 60.000 0.00 0.00 37.81 3.51
7647 8499 0.802494 TCGTCTAACGACCGTTACCC 59.198 55.000 10.52 4.28 46.73 3.69
7667 8526 3.493176 GGCCAAATAGCTAAAGGGCAATG 60.493 47.826 25.14 6.78 43.09 2.82
7670 8529 1.687996 GGGCCAAATAGCTAAAGGGCA 60.688 52.381 26.30 0.00 45.78 5.36
7671 8530 1.040646 GGGCCAAATAGCTAAAGGGC 58.959 55.000 20.78 20.78 43.51 5.19
7674 8533 3.096092 TGGTTGGGCCAAATAGCTAAAG 58.904 45.455 22.82 0.00 45.94 1.85
7686 9912 1.227527 GCAACTGTTTGGTTGGGCC 60.228 57.895 0.00 0.00 44.55 5.80
7705 9931 1.734465 CGAGGAGAAAGATGGTTGCAC 59.266 52.381 0.00 0.00 0.00 4.57
7706 9932 1.339055 CCGAGGAGAAAGATGGTTGCA 60.339 52.381 0.00 0.00 0.00 4.08
7713 9959 2.917804 GGGGACCGAGGAGAAAGAT 58.082 57.895 0.00 0.00 40.86 2.40
7730 9976 2.404215 CGGTATTGGCGATAACTGAGG 58.596 52.381 8.14 0.00 0.00 3.86
7731 9977 1.792949 GCGGTATTGGCGATAACTGAG 59.207 52.381 8.14 0.00 0.00 3.35
7745 9991 2.201022 CCTGCTAGGGTCGCGGTAT 61.201 63.158 6.13 0.00 31.87 2.73
7746 9992 2.831742 CCTGCTAGGGTCGCGGTA 60.832 66.667 6.13 0.00 31.87 4.02
7757 10003 4.082523 GTGGTGGCGAGCCTGCTA 62.083 66.667 15.75 3.66 36.94 3.49
7779 10025 3.636929 CTACGGGGCCATGGTTGCA 62.637 63.158 14.67 0.00 0.00 4.08
7796 10042 0.249238 GCTCATCTCGCCGTCATTCT 60.249 55.000 0.00 0.00 0.00 2.40
7803 10049 1.008652 CTCTGAGCTCATCTCGCCG 60.009 63.158 18.63 3.48 44.86 6.46
7824 10070 1.140407 CTTTCGAGAGCGGCGTTAGG 61.140 60.000 9.37 0.00 38.28 2.69
7825 10071 0.179171 TCTTTCGAGAGCGGCGTTAG 60.179 55.000 9.37 0.00 38.28 2.34
7827 10073 1.006571 TTCTTTCGAGAGCGGCGTT 60.007 52.632 9.37 0.48 38.28 4.84
7829 10075 1.078759 ATGTTCTTTCGAGAGCGGCG 61.079 55.000 0.51 0.51 38.28 6.46
7866 10112 2.822697 ACCCTAGTTCAGAGAAGACCC 58.177 52.381 0.00 0.00 0.00 4.46
7867 10113 4.403113 CCTAACCCTAGTTCAGAGAAGACC 59.597 50.000 0.00 0.00 37.42 3.85
7876 10122 3.572661 AGGAACCCTAACCCTAGTTCA 57.427 47.619 0.00 0.00 40.27 3.18
7897 10143 2.514458 ATCGGAAAATGCCCACTTCT 57.486 45.000 0.00 0.00 0.00 2.85
7904 10150 2.947448 AGCTCAAATCGGAAAATGCC 57.053 45.000 0.00 0.00 0.00 4.40
7906 10152 6.956299 AATCAAAGCTCAAATCGGAAAATG 57.044 33.333 0.00 0.00 0.00 2.32
7912 10158 5.051891 AGTCAAATCAAAGCTCAAATCGG 57.948 39.130 0.00 0.00 0.00 4.18
7914 10160 6.017400 TGGAGTCAAATCAAAGCTCAAATC 57.983 37.500 0.00 0.00 0.00 2.17
7924 10170 9.835389 AAAAATCAAAGATTGGAGTCAAATCAA 57.165 25.926 20.20 2.80 36.36 2.57
7935 10181 7.018635 ACAAGCAACAAAAATCAAAGATTGG 57.981 32.000 0.00 0.00 0.00 3.16
7965 10211 5.063060 CCGTTGTGGCTAGACACTAAAATAC 59.937 44.000 28.56 14.94 41.84 1.89
7967 10213 4.000988 CCGTTGTGGCTAGACACTAAAAT 58.999 43.478 28.56 0.00 41.84 1.82
7978 10224 1.338674 CCAAGTCATCCGTTGTGGCTA 60.339 52.381 0.00 0.00 37.80 3.93
7988 10234 2.094675 CCACACCAATCCAAGTCATCC 58.905 52.381 0.00 0.00 0.00 3.51
7993 10239 1.691196 CACACCACACCAATCCAAGT 58.309 50.000 0.00 0.00 0.00 3.16
8024 10270 4.084328 GGTAGCTTATAGATGCAAAGCACG 60.084 45.833 19.34 0.00 46.35 5.34
8045 10291 0.170561 CAACGAATCTCTCCGTCGGT 59.829 55.000 11.88 0.00 39.07 4.69
8046 10292 1.140407 GCAACGAATCTCTCCGTCGG 61.140 60.000 4.39 4.39 39.07 4.79
8049 10295 2.002586 CAATGCAACGAATCTCTCCGT 58.997 47.619 0.00 0.00 41.14 4.69
8058 10304 1.067706 CATGCCTTCCAATGCAACGAA 60.068 47.619 0.00 0.00 41.50 3.85
8144 10390 2.600420 CACTAATGAGCTACGTGCACAG 59.400 50.000 18.64 12.16 44.80 3.66
8157 10403 5.005299 CGCACACGATTATGAACACTAATGA 59.995 40.000 0.00 0.00 43.93 2.57
8160 10406 3.061563 GCGCACACGATTATGAACACTAA 59.938 43.478 0.30 0.00 43.93 2.24
8162 10408 1.393539 GCGCACACGATTATGAACACT 59.606 47.619 0.30 0.00 43.93 3.55
8163 10409 1.127766 TGCGCACACGATTATGAACAC 59.872 47.619 5.66 0.00 43.93 3.32
8165 10411 2.737467 ATGCGCACACGATTATGAAC 57.263 45.000 14.90 0.00 43.93 3.18
8180 10426 7.164171 GTGCACACTAATAAAAAGATGTATGCG 59.836 37.037 13.17 0.00 0.00 4.73
8252 10498 8.099364 ACTGACCATTTTTCACACACTTATAG 57.901 34.615 0.00 0.00 0.00 1.31
8302 10548 9.950680 AGTAAACAACTATTTCAAATGACACTG 57.049 29.630 0.00 0.00 36.36 3.66
8331 10577 5.652994 TTAAACAACACAAAGCTTGGTCT 57.347 34.783 2.59 0.00 34.12 3.85
8350 10596 9.589461 TGGTCTTTAATCAACCCACTTATTTAA 57.411 29.630 0.00 0.00 31.78 1.52
8351 10597 9.589461 TTGGTCTTTAATCAACCCACTTATTTA 57.411 29.630 0.00 0.00 31.78 1.40
8352 10598 8.485578 TTGGTCTTTAATCAACCCACTTATTT 57.514 30.769 0.00 0.00 31.78 1.40
8353 10599 8.364894 GTTTGGTCTTTAATCAACCCACTTATT 58.635 33.333 0.00 0.00 31.78 1.40
8354 10600 7.728532 AGTTTGGTCTTTAATCAACCCACTTAT 59.271 33.333 0.00 0.00 31.78 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.