Multiple sequence alignment - TraesCS6D01G065100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G065100 chr6D 100.000 5842 0 0 1 5842 31756266 31750425 0.000000e+00 10789.0
1 TraesCS6D01G065100 chr6D 97.841 1482 21 4 1 1475 23426285 23424808 0.000000e+00 2549.0
2 TraesCS6D01G065100 chr6D 84.388 1928 260 35 1820 3727 31770570 31768664 0.000000e+00 1855.0
3 TraesCS6D01G065100 chr6D 84.058 1932 263 37 1820 3727 23440453 23438543 0.000000e+00 1820.0
4 TraesCS6D01G065100 chr6D 80.732 1147 193 21 3831 4958 23438469 23437332 0.000000e+00 869.0
5 TraesCS6D01G065100 chr6D 80.645 1147 194 21 3831 4958 31768590 31767453 0.000000e+00 863.0
6 TraesCS6D01G065100 chr6D 77.638 635 71 38 688 1290 23441253 23440658 2.630000e-83 320.0
7 TraesCS6D01G065100 chr6D 77.480 635 72 38 688 1290 31771370 31770775 1.220000e-81 315.0
8 TraesCS6D01G065100 chr6B 92.572 4389 263 36 1015 5375 67131887 67127534 0.000000e+00 6240.0
9 TraesCS6D01G065100 chr6B 92.851 3735 227 23 1407 5120 67324030 67320315 0.000000e+00 5382.0
10 TraesCS6D01G065100 chr6B 81.813 3211 498 73 1820 4977 66991894 66988717 0.000000e+00 2615.0
11 TraesCS6D01G065100 chr6B 81.098 1968 299 52 1820 3761 66971097 66969177 0.000000e+00 1506.0
12 TraesCS6D01G065100 chr6B 79.029 1669 303 31 3801 5435 67409326 67407671 0.000000e+00 1099.0
13 TraesCS6D01G065100 chr6B 92.435 727 38 12 695 1417 67324768 67324055 0.000000e+00 1022.0
14 TraesCS6D01G065100 chr6B 94.514 638 27 6 1 636 67132444 67133075 0.000000e+00 977.0
15 TraesCS6D01G065100 chr6B 79.526 1392 248 29 3823 5187 68780505 68779124 0.000000e+00 957.0
16 TraesCS6D01G065100 chr6B 80.076 1315 225 29 3823 5111 68751196 68752499 0.000000e+00 942.0
17 TraesCS6D01G065100 chr6B 93.830 470 23 3 117 581 66973268 66973736 0.000000e+00 702.0
18 TraesCS6D01G065100 chr6B 88.267 554 49 9 636 1187 66972895 66972356 0.000000e+00 649.0
19 TraesCS6D01G065100 chr6B 89.474 380 19 8 686 1050 67132261 67131888 1.480000e-125 460.0
20 TraesCS6D01G065100 chr6B 78.080 552 83 25 755 1290 67411909 67411380 1.220000e-81 315.0
21 TraesCS6D01G065100 chr6B 77.699 565 66 36 755 1289 66992642 66992108 2.060000e-74 291.0
22 TraesCS6D01G065100 chr6B 80.049 411 65 13 874 1276 68748270 68748671 7.410000e-74 289.0
23 TraesCS6D01G065100 chr6B 79.439 428 67 15 874 1289 68783878 68783460 3.450000e-72 283.0
24 TraesCS6D01G065100 chr6B 79.800 401 49 15 814 1190 66863300 66862908 4.490000e-66 263.0
25 TraesCS6D01G065100 chr6B 79.800 401 49 15 814 1190 66921181 66920789 4.490000e-66 263.0
26 TraesCS6D01G065100 chr6B 77.645 501 61 30 714 1190 66945849 66945376 2.090000e-64 257.0
27 TraesCS6D01G065100 chr6B 77.955 440 73 16 3981 4419 66968950 66968534 2.700000e-63 254.0
28 TraesCS6D01G065100 chr6B 77.273 418 50 24 801 1201 66756574 66756185 2.760000e-48 204.0
29 TraesCS6D01G065100 chr6B 91.870 123 6 2 1 119 66972986 66973108 1.010000e-37 169.0
30 TraesCS6D01G065100 chr6B 97.260 73 2 0 5380 5452 67110394 67110322 2.210000e-24 124.0
31 TraesCS6D01G065100 chr6B 97.260 73 1 1 5380 5452 67315455 67315384 7.950000e-24 122.0
32 TraesCS6D01G065100 chr2B 80.603 3083 482 80 1842 4861 696670289 696673318 0.000000e+00 2274.0
33 TraesCS6D01G065100 chr6A 79.870 3085 505 91 1820 4859 36108982 36105969 0.000000e+00 2150.0
34 TraesCS6D01G065100 chr6A 84.135 1954 263 40 1820 3743 36252880 36250944 0.000000e+00 1847.0
35 TraesCS6D01G065100 chr6A 79.042 1670 294 40 3823 5449 36250921 36249265 0.000000e+00 1094.0
36 TraesCS6D01G065100 chr6A 93.564 637 30 7 1 631 36110892 36111523 0.000000e+00 939.0
37 TraesCS6D01G065100 chr6A 88.142 565 44 7 632 1187 36110790 36110240 0.000000e+00 651.0
38 TraesCS6D01G065100 chr6A 79.107 560 71 30 755 1290 36253618 36253081 1.560000e-90 344.0
39 TraesCS6D01G065100 chr6A 86.207 116 15 1 1411 1525 524371465 524371350 2.210000e-24 124.0
40 TraesCS6D01G065100 chr7A 88.889 81 7 2 1445 1523 130093255 130093175 1.340000e-16 99.0
41 TraesCS6D01G065100 chrUn 90.411 73 6 1 1452 1523 373849916 373849988 1.730000e-15 95.3
42 TraesCS6D01G065100 chr5A 90.411 73 6 1 1452 1523 673531273 673531201 1.730000e-15 95.3
43 TraesCS6D01G065100 chr4B 85.714 84 11 1 1448 1530 18705722 18705639 2.900000e-13 87.9
44 TraesCS6D01G065100 chr1B 85.542 83 11 1 1440 1521 500605577 500605495 1.040000e-12 86.1
45 TraesCS6D01G065100 chr3B 81.553 103 17 2 1410 1510 739325315 739325213 3.750000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G065100 chr6D 31750425 31756266 5841 True 10789.0 10789 100.000000 1 5842 1 chr6D.!!$R2 5841
1 TraesCS6D01G065100 chr6D 23424808 23426285 1477 True 2549.0 2549 97.841000 1 1475 1 chr6D.!!$R1 1474
2 TraesCS6D01G065100 chr6D 31767453 31771370 3917 True 1011.0 1855 80.837667 688 4958 3 chr6D.!!$R4 4270
3 TraesCS6D01G065100 chr6D 23437332 23441253 3921 True 1003.0 1820 80.809333 688 4958 3 chr6D.!!$R3 4270
4 TraesCS6D01G065100 chr6B 67127534 67132261 4727 True 3350.0 6240 91.023000 686 5375 2 chr6B.!!$R9 4689
5 TraesCS6D01G065100 chr6B 67320315 67324768 4453 True 3202.0 5382 92.643000 695 5120 2 chr6B.!!$R10 4425
6 TraesCS6D01G065100 chr6B 66988717 66992642 3925 True 1453.0 2615 79.756000 755 4977 2 chr6B.!!$R8 4222
7 TraesCS6D01G065100 chr6B 67132444 67133075 631 False 977.0 977 94.514000 1 636 1 chr6B.!!$F1 635
8 TraesCS6D01G065100 chr6B 66968534 66972895 4361 True 803.0 1506 82.440000 636 4419 3 chr6B.!!$R7 3783
9 TraesCS6D01G065100 chr6B 67407671 67411909 4238 True 707.0 1099 78.554500 755 5435 2 chr6B.!!$R11 4680
10 TraesCS6D01G065100 chr6B 68779124 68783878 4754 True 620.0 957 79.482500 874 5187 2 chr6B.!!$R12 4313
11 TraesCS6D01G065100 chr6B 68748270 68752499 4229 False 615.5 942 80.062500 874 5111 2 chr6B.!!$F3 4237
12 TraesCS6D01G065100 chr6B 66972986 66973736 750 False 435.5 702 92.850000 1 581 2 chr6B.!!$F2 580
13 TraesCS6D01G065100 chr2B 696670289 696673318 3029 False 2274.0 2274 80.603000 1842 4861 1 chr2B.!!$F1 3019
14 TraesCS6D01G065100 chr6A 36105969 36110790 4821 True 1400.5 2150 84.006000 632 4859 2 chr6A.!!$R2 4227
15 TraesCS6D01G065100 chr6A 36249265 36253618 4353 True 1095.0 1847 80.761333 755 5449 3 chr6A.!!$R3 4694
16 TraesCS6D01G065100 chr6A 36110892 36111523 631 False 939.0 939 93.564000 1 631 1 chr6A.!!$F1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 47 2.053627 GCACTGAAAATGAAGCCAACG 58.946 47.619 0.00 0.00 0.00 4.10 F
712 900 2.601314 GACGTATGCTACAATCGTGCAA 59.399 45.455 0.00 0.00 40.24 4.08 F
1559 2630 1.002624 TTGAACCTTGGCTAGCCCG 60.003 57.895 30.81 20.65 35.87 6.13 F
2815 4059 0.247736 ACGCTAGAACTCTTGGCCAG 59.752 55.000 5.11 0.00 0.00 4.85 F
3536 5636 3.874383 TTTTGACAGGTGGGATCTTGA 57.126 42.857 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1064 1380 0.323360 GCCACCATTTCCAGCTACCA 60.323 55.000 0.0 0.0 0.00 3.25 R
2327 3559 1.002430 ACATCGTCTGCCAAGTCATGT 59.998 47.619 0.0 0.0 0.00 3.21 R
3536 5636 0.036022 GGGAAGTGAGTCAGCAGCTT 59.964 55.000 0.0 0.0 0.00 3.74 R
3617 5717 0.731417 CGCTCCATGCTCTTTTCTGG 59.269 55.000 0.0 0.0 40.11 3.86 R
5463 7659 0.107831 ACTTTGTAACAGCGGGCAGA 59.892 50.000 0.0 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 2.053627 GCACTGAAAATGAAGCCAACG 58.946 47.619 0.00 0.00 0.00 4.10
712 900 2.601314 GACGTATGCTACAATCGTGCAA 59.399 45.455 0.00 0.00 40.24 4.08
1064 1380 1.523758 GTGCTCCATTCGGTTTCACT 58.476 50.000 0.00 0.00 0.00 3.41
1190 1510 9.489084 CGATGATTTTGACTTCCAGGTATATAA 57.511 33.333 0.00 0.00 0.00 0.98
1512 2583 4.849336 CAGTCGACTGAGACCGTG 57.151 61.111 36.73 11.17 46.59 4.94
1524 2595 1.071814 GACCGTGCCACACCCTTAA 59.928 57.895 0.00 0.00 0.00 1.85
1538 2609 7.012421 GCCACACCCTTAATAAATAGAAGTGAG 59.988 40.741 0.00 0.00 0.00 3.51
1559 2630 1.002624 TTGAACCTTGGCTAGCCCG 60.003 57.895 30.81 20.65 35.87 6.13
1597 2669 9.268282 TCTATACCCTCAGTTTAGAAGTCATTT 57.732 33.333 0.00 0.00 36.46 2.32
1605 2677 9.442047 CTCAGTTTAGAAGTCATTTTAGGATGT 57.558 33.333 0.00 0.00 0.00 3.06
1712 2785 7.757941 TGATATGTGTTTTGAATGAGGACAA 57.242 32.000 0.00 0.00 0.00 3.18
1734 2812 6.012508 ACAATTCTCAATCCTTACCTCTTCCA 60.013 38.462 0.00 0.00 0.00 3.53
1969 3193 1.153409 CTCAAGCGCCTCTGCATCT 60.153 57.895 2.29 0.00 37.32 2.90
2174 3398 4.130286 AGCTTGAGTGCAGTAATAGTCC 57.870 45.455 0.00 0.00 34.99 3.85
2308 3538 9.130312 GACGTATTCTTCTCATTATGTATGACC 57.870 37.037 0.00 0.00 38.35 4.02
2393 3625 1.273327 GGTGATTTCAACCTTGGGCTG 59.727 52.381 0.00 0.00 0.00 4.85
2417 3649 3.682718 GCAAAGACATTAGAGGGCTGCTA 60.683 47.826 0.00 0.00 0.00 3.49
2603 3835 0.698238 ACAAGGCAAGGCACCATCTA 59.302 50.000 0.00 0.00 0.00 1.98
2610 3842 2.680805 GCAAGGCACCATCTAAGCTACA 60.681 50.000 0.00 0.00 0.00 2.74
2815 4059 0.247736 ACGCTAGAACTCTTGGCCAG 59.752 55.000 5.11 0.00 0.00 4.85
3187 4439 7.561021 TTGTTACTGAAGAAATGTAGTTGCA 57.439 32.000 0.00 0.00 0.00 4.08
3465 5562 7.155328 AGACTCATGTGTTAGTTAAGACCTTG 58.845 38.462 1.31 0.00 0.00 3.61
3467 5564 6.706270 ACTCATGTGTTAGTTAAGACCTTGTG 59.294 38.462 0.00 0.67 0.00 3.33
3507 5606 8.445275 TGTTGTTATAGAAGTTTCACACACAT 57.555 30.769 0.00 0.00 0.00 3.21
3536 5636 3.874383 TTTTGACAGGTGGGATCTTGA 57.126 42.857 0.00 0.00 0.00 3.02
3593 5693 6.821665 TCATGTTATAAGGCTCTTTACACCAC 59.178 38.462 0.00 0.00 0.00 4.16
3870 5998 8.421002 TCCTTTTCCGATTTTTCTGATTTTCTT 58.579 29.630 0.00 0.00 0.00 2.52
3887 6015 3.217599 TCTTGACCGACTTTCATCGAG 57.782 47.619 0.00 0.00 45.13 4.04
3953 6083 9.674824 CTCATATTATTTTCTTTAGCAAGCCAG 57.325 33.333 0.00 0.00 0.00 4.85
4044 6179 3.942748 GGCGAGTAAACCATGGTGATTAA 59.057 43.478 20.60 0.00 0.00 1.40
4047 6182 6.405397 GGCGAGTAAACCATGGTGATTAAATT 60.405 38.462 20.60 9.62 0.00 1.82
4099 6238 6.475207 CACGTGAAATTACCTAGTTGTATGC 58.525 40.000 10.90 0.00 0.00 3.14
4224 6364 9.370930 TCGAGGGAAAATGGTTATCTACTAATA 57.629 33.333 0.00 0.00 0.00 0.98
4239 6395 7.698506 TCTACTAATAATGTCCCTACATCCG 57.301 40.000 0.00 0.00 45.79 4.18
4247 6403 2.228925 GTCCCTACATCCGAGGACTAC 58.771 57.143 0.00 0.00 44.46 2.73
4248 6404 1.848388 TCCCTACATCCGAGGACTACA 59.152 52.381 0.00 0.00 35.99 2.74
4268 6424 6.761714 ACTACATAAGAAACGGAATCATCACC 59.238 38.462 0.00 0.00 0.00 4.02
4331 6487 2.358195 GGGGCATGATTTAACAGAGGGT 60.358 50.000 0.00 0.00 0.00 4.34
4513 6671 1.146930 CTAGTGGGTGCGCATCCAT 59.853 57.895 42.54 31.03 44.63 3.41
4516 6674 2.035469 TGGGTGCGCATCCATGTT 59.965 55.556 38.06 0.00 36.49 2.71
4545 6703 5.698104 TGACCAAAATAGGCATGATCTGAT 58.302 37.500 0.00 0.00 0.00 2.90
4550 6709 8.800332 ACCAAAATAGGCATGATCTGATATTTC 58.200 33.333 0.00 0.00 31.93 2.17
4653 6813 1.064505 GTGATGCCGATGAACACATGG 59.935 52.381 0.00 0.00 0.00 3.66
4808 6971 2.039216 TGACGAGCAAAAACTCCCCATA 59.961 45.455 0.00 0.00 32.79 2.74
4835 6998 3.780294 AGGATTACACCAGGATGTTGCTA 59.220 43.478 0.00 0.00 33.85 3.49
4925 7103 4.944619 TGCCATCTAGGATGTTGACTAG 57.055 45.455 6.75 0.00 41.22 2.57
4932 7110 7.039434 CCATCTAGGATGTTGACTAGCATTCTA 60.039 40.741 6.75 0.00 41.22 2.10
4941 7119 8.648557 TGTTGACTAGCATTCTACATCATTAC 57.351 34.615 0.00 0.00 0.00 1.89
4958 7136 9.679661 ACATCATTACCATATGTGTTTCAAGTA 57.320 29.630 1.24 0.00 32.74 2.24
4996 7174 6.997239 ATACCCGAAGAAAAGTTATGAACC 57.003 37.500 0.00 0.00 0.00 3.62
5116 7298 5.865085 TGTATGAGAATAGTATTGGGTGGC 58.135 41.667 0.00 0.00 0.00 5.01
5138 7320 2.032550 GCAGCTTTATGACGATGTGCAT 59.967 45.455 0.00 0.00 0.00 3.96
5147 7329 5.663795 ATGACGATGTGCATATTGTTCTC 57.336 39.130 16.58 6.02 0.00 2.87
5169 7351 4.095782 TCGTGCAATAGGTGGCTTAAATTC 59.904 41.667 0.00 0.00 0.00 2.17
5216 7399 4.703379 ATCAAGGCAAATGGGTCAAAAA 57.297 36.364 0.00 0.00 0.00 1.94
5217 7400 4.070630 TCAAGGCAAATGGGTCAAAAAG 57.929 40.909 0.00 0.00 0.00 2.27
5218 7401 3.454082 TCAAGGCAAATGGGTCAAAAAGT 59.546 39.130 0.00 0.00 0.00 2.66
5274 7468 3.864789 ACACTCATTTGTGGAAGACCT 57.135 42.857 0.00 0.00 41.84 3.85
5292 7486 1.537990 CCTTCTTTGCAAACGGGGTTG 60.538 52.381 8.05 0.00 0.00 3.77
5294 7488 0.741915 TCTTTGCAAACGGGGTTGTC 59.258 50.000 8.05 0.00 0.00 3.18
5295 7489 0.744281 CTTTGCAAACGGGGTTGTCT 59.256 50.000 8.05 0.00 0.00 3.41
5318 7514 0.691904 TCCAATTTTACGACGGGGGT 59.308 50.000 0.00 0.00 0.00 4.95
5375 7571 1.937899 GCCCACATAACCGACATACAC 59.062 52.381 0.00 0.00 0.00 2.90
5377 7573 3.194861 CCCACATAACCGACATACACAG 58.805 50.000 0.00 0.00 0.00 3.66
5378 7574 3.118920 CCCACATAACCGACATACACAGA 60.119 47.826 0.00 0.00 0.00 3.41
5381 7577 5.584649 CCACATAACCGACATACACAGATTT 59.415 40.000 0.00 0.00 0.00 2.17
5382 7578 6.759356 CCACATAACCGACATACACAGATTTA 59.241 38.462 0.00 0.00 0.00 1.40
5389 7585 8.378172 ACCGACATACACAGATTTATAATTGG 57.622 34.615 0.00 0.00 0.00 3.16
5409 7605 5.327737 TGGTAAAACTTTCTATGGTGGGT 57.672 39.130 0.00 0.00 0.00 4.51
5439 7635 8.537728 TGGCTCACCAAAGATAAAATATGATT 57.462 30.769 0.00 0.00 45.37 2.57
5440 7636 8.415553 TGGCTCACCAAAGATAAAATATGATTG 58.584 33.333 0.00 0.00 45.37 2.67
5458 7654 6.140303 TGATTGAGATAGAAGCAAATTGGC 57.860 37.500 0.00 0.00 0.00 4.52
5459 7655 4.989279 TTGAGATAGAAGCAAATTGGCC 57.011 40.909 0.00 0.00 0.00 5.36
5460 7656 4.240881 TGAGATAGAAGCAAATTGGCCT 57.759 40.909 3.32 0.00 0.00 5.19
5461 7657 4.603131 TGAGATAGAAGCAAATTGGCCTT 58.397 39.130 3.32 0.00 0.00 4.35
5462 7658 5.018809 TGAGATAGAAGCAAATTGGCCTTT 58.981 37.500 3.32 0.00 0.00 3.11
5463 7659 5.481473 TGAGATAGAAGCAAATTGGCCTTTT 59.519 36.000 3.32 0.74 0.00 2.27
5464 7660 5.970592 AGATAGAAGCAAATTGGCCTTTTC 58.029 37.500 3.32 0.00 0.00 2.29
5465 7661 5.718607 AGATAGAAGCAAATTGGCCTTTTCT 59.281 36.000 3.32 11.37 32.62 2.52
5466 7662 3.999046 AGAAGCAAATTGGCCTTTTCTG 58.001 40.909 3.32 0.00 28.39 3.02
5467 7663 2.174363 AGCAAATTGGCCTTTTCTGC 57.826 45.000 3.32 6.80 0.00 4.26
5473 7669 3.752339 GGCCTTTTCTGCCCGCTG 61.752 66.667 0.00 0.00 43.33 5.18
5474 7670 2.985847 GCCTTTTCTGCCCGCTGT 60.986 61.111 0.00 0.00 0.00 4.40
5475 7671 2.564721 GCCTTTTCTGCCCGCTGTT 61.565 57.895 0.00 0.00 0.00 3.16
5476 7672 1.241315 GCCTTTTCTGCCCGCTGTTA 61.241 55.000 0.00 0.00 0.00 2.41
5477 7673 0.521735 CCTTTTCTGCCCGCTGTTAC 59.478 55.000 0.00 0.00 0.00 2.50
5478 7674 1.234821 CTTTTCTGCCCGCTGTTACA 58.765 50.000 0.00 0.00 0.00 2.41
5479 7675 1.606668 CTTTTCTGCCCGCTGTTACAA 59.393 47.619 0.00 0.00 0.00 2.41
5480 7676 1.681538 TTTCTGCCCGCTGTTACAAA 58.318 45.000 0.00 0.00 0.00 2.83
5481 7677 1.234821 TTCTGCCCGCTGTTACAAAG 58.765 50.000 0.00 0.00 0.00 2.77
5482 7678 0.107831 TCTGCCCGCTGTTACAAAGT 59.892 50.000 0.00 0.00 0.00 2.66
5483 7679 1.345089 TCTGCCCGCTGTTACAAAGTA 59.655 47.619 0.00 0.00 0.00 2.24
5484 7680 1.463444 CTGCCCGCTGTTACAAAGTAC 59.537 52.381 0.00 0.00 0.00 2.73
5485 7681 1.202663 TGCCCGCTGTTACAAAGTACA 60.203 47.619 0.00 0.00 0.00 2.90
5486 7682 1.874872 GCCCGCTGTTACAAAGTACAA 59.125 47.619 0.00 0.00 0.00 2.41
5487 7683 2.291190 GCCCGCTGTTACAAAGTACAAA 59.709 45.455 0.00 0.00 0.00 2.83
5488 7684 3.850740 GCCCGCTGTTACAAAGTACAAAC 60.851 47.826 0.00 0.00 0.00 2.93
5489 7685 3.312973 CCCGCTGTTACAAAGTACAAACA 59.687 43.478 0.00 0.00 0.00 2.83
5490 7686 4.201930 CCCGCTGTTACAAAGTACAAACAA 60.202 41.667 0.00 0.00 31.90 2.83
5491 7687 5.506649 CCCGCTGTTACAAAGTACAAACAAT 60.507 40.000 0.00 0.00 31.90 2.71
5492 7688 5.623673 CCGCTGTTACAAAGTACAAACAATC 59.376 40.000 0.00 0.00 31.90 2.67
5493 7689 6.427150 CGCTGTTACAAAGTACAAACAATCT 58.573 36.000 0.00 0.00 31.90 2.40
5494 7690 6.356977 CGCTGTTACAAAGTACAAACAATCTG 59.643 38.462 0.00 0.00 31.90 2.90
5495 7691 7.193595 GCTGTTACAAAGTACAAACAATCTGT 58.806 34.615 0.00 0.00 31.90 3.41
5496 7692 8.339714 GCTGTTACAAAGTACAAACAATCTGTA 58.660 33.333 0.00 0.00 31.90 2.74
5497 7693 9.864034 CTGTTACAAAGTACAAACAATCTGTAG 57.136 33.333 0.00 0.00 31.90 2.74
5498 7694 8.832521 TGTTACAAAGTACAAACAATCTGTAGG 58.167 33.333 0.00 0.00 30.04 3.18
5499 7695 8.833493 GTTACAAAGTACAAACAATCTGTAGGT 58.167 33.333 0.00 0.00 30.04 3.08
5500 7696 7.492352 ACAAAGTACAAACAATCTGTAGGTC 57.508 36.000 0.00 0.00 30.04 3.85
5501 7697 7.280356 ACAAAGTACAAACAATCTGTAGGTCT 58.720 34.615 0.00 0.00 30.04 3.85
5502 7698 7.773690 ACAAAGTACAAACAATCTGTAGGTCTT 59.226 33.333 0.00 0.00 30.04 3.01
5503 7699 7.964604 AAGTACAAACAATCTGTAGGTCTTC 57.035 36.000 0.00 0.00 30.04 2.87
5504 7700 6.465084 AGTACAAACAATCTGTAGGTCTTCC 58.535 40.000 0.00 0.00 30.04 3.46
5505 7701 5.304686 ACAAACAATCTGTAGGTCTTCCA 57.695 39.130 0.00 0.00 35.89 3.53
5506 7702 5.063880 ACAAACAATCTGTAGGTCTTCCAC 58.936 41.667 0.00 0.00 35.89 4.02
5507 7703 4.974645 AACAATCTGTAGGTCTTCCACA 57.025 40.909 0.00 0.00 35.89 4.17
5508 7704 4.543590 ACAATCTGTAGGTCTTCCACAG 57.456 45.455 0.00 0.00 40.63 3.66
5509 7705 3.261897 ACAATCTGTAGGTCTTCCACAGG 59.738 47.826 12.83 0.00 40.18 4.00
5510 7706 1.938585 TCTGTAGGTCTTCCACAGGG 58.061 55.000 12.83 0.00 40.18 4.45
5511 7707 1.149288 TCTGTAGGTCTTCCACAGGGT 59.851 52.381 12.83 0.00 40.18 4.34
5512 7708 2.380932 TCTGTAGGTCTTCCACAGGGTA 59.619 50.000 12.83 0.00 40.18 3.69
5513 7709 3.170717 CTGTAGGTCTTCCACAGGGTAA 58.829 50.000 0.00 0.00 38.24 2.85
5514 7710 3.581332 CTGTAGGTCTTCCACAGGGTAAA 59.419 47.826 0.00 0.00 38.24 2.01
5515 7711 3.325716 TGTAGGTCTTCCACAGGGTAAAC 59.674 47.826 0.00 0.00 35.89 2.01
5516 7712 1.703513 AGGTCTTCCACAGGGTAAACC 59.296 52.381 0.00 0.00 36.26 3.27
5517 7713 3.629350 AGGTCTTCCACAGGGTAAACCC 61.629 54.545 10.41 10.41 45.99 4.11
5521 7717 9.863898 TAGGTCTTCCACAGGGTAAACCCTATT 62.864 44.444 20.35 7.94 40.93 1.73
5532 7728 6.785337 GGTAAACCCTATTTTGCACCTTAT 57.215 37.500 0.00 0.00 0.00 1.73
5533 7729 6.569780 GGTAAACCCTATTTTGCACCTTATG 58.430 40.000 0.00 0.00 0.00 1.90
5541 7737 3.590824 GCACCTTATGCGCCAGTT 58.409 55.556 4.18 0.00 46.55 3.16
5542 7738 2.775351 GCACCTTATGCGCCAGTTA 58.225 52.632 4.18 0.00 46.55 2.24
5543 7739 1.091537 GCACCTTATGCGCCAGTTAA 58.908 50.000 4.18 0.00 46.55 2.01
5544 7740 1.470890 GCACCTTATGCGCCAGTTAAA 59.529 47.619 4.18 0.00 46.55 1.52
5545 7741 2.477863 GCACCTTATGCGCCAGTTAAAG 60.478 50.000 4.18 0.00 46.55 1.85
5546 7742 2.097466 CACCTTATGCGCCAGTTAAAGG 59.903 50.000 4.18 11.05 39.50 3.11
5569 7765 1.997669 TTTTTCCAACACGCACAACC 58.002 45.000 0.00 0.00 0.00 3.77
5570 7766 0.173708 TTTTCCAACACGCACAACCC 59.826 50.000 0.00 0.00 0.00 4.11
5571 7767 0.681564 TTTCCAACACGCACAACCCT 60.682 50.000 0.00 0.00 0.00 4.34
5572 7768 1.098712 TTCCAACACGCACAACCCTC 61.099 55.000 0.00 0.00 0.00 4.30
5573 7769 1.525995 CCAACACGCACAACCCTCT 60.526 57.895 0.00 0.00 0.00 3.69
5574 7770 1.507141 CCAACACGCACAACCCTCTC 61.507 60.000 0.00 0.00 0.00 3.20
5575 7771 0.532862 CAACACGCACAACCCTCTCT 60.533 55.000 0.00 0.00 0.00 3.10
5576 7772 0.532862 AACACGCACAACCCTCTCTG 60.533 55.000 0.00 0.00 0.00 3.35
5577 7773 1.069765 CACGCACAACCCTCTCTGT 59.930 57.895 0.00 0.00 0.00 3.41
5578 7774 1.069765 ACGCACAACCCTCTCTGTG 59.930 57.895 0.00 0.00 44.70 3.66
5579 7775 1.367471 CGCACAACCCTCTCTGTGA 59.633 57.895 6.39 0.00 44.68 3.58
5580 7776 0.668706 CGCACAACCCTCTCTGTGAG 60.669 60.000 6.39 0.00 44.68 3.51
5587 7783 2.985456 CTCTCTGTGAGGTGGGCC 59.015 66.667 0.00 0.00 39.08 5.80
5588 7784 1.915266 CTCTCTGTGAGGTGGGCCA 60.915 63.158 0.00 0.00 39.08 5.36
5589 7785 1.897225 CTCTCTGTGAGGTGGGCCAG 61.897 65.000 6.40 0.00 39.08 4.85
5590 7786 3.618780 CTCTGTGAGGTGGGCCAGC 62.619 68.421 27.81 27.81 37.19 4.85
5591 7787 4.729918 CTGTGAGGTGGGCCAGCC 62.730 72.222 30.80 22.20 37.19 4.85
5604 7800 3.843893 GGCCAGCCCATTTATCATTTT 57.156 42.857 0.00 0.00 0.00 1.82
5605 7801 4.155063 GGCCAGCCCATTTATCATTTTT 57.845 40.909 0.00 0.00 0.00 1.94
5628 7824 7.665561 TTTTCTTTCTGGTTTTTCAAAGGTG 57.334 32.000 0.00 0.00 0.00 4.00
5629 7825 4.754322 TCTTTCTGGTTTTTCAAAGGTGC 58.246 39.130 0.00 0.00 0.00 5.01
5630 7826 4.221703 TCTTTCTGGTTTTTCAAAGGTGCA 59.778 37.500 0.00 0.00 0.00 4.57
5631 7827 3.518634 TCTGGTTTTTCAAAGGTGCAC 57.481 42.857 8.80 8.80 0.00 4.57
5632 7828 2.828520 TCTGGTTTTTCAAAGGTGCACA 59.171 40.909 20.43 0.00 0.00 4.57
5633 7829 2.929398 CTGGTTTTTCAAAGGTGCACAC 59.071 45.455 20.43 8.23 0.00 3.82
5634 7830 2.300152 TGGTTTTTCAAAGGTGCACACA 59.700 40.909 20.43 0.00 0.00 3.72
5635 7831 2.929398 GGTTTTTCAAAGGTGCACACAG 59.071 45.455 20.43 5.32 0.00 3.66
5636 7832 2.292103 TTTTCAAAGGTGCACACAGC 57.708 45.000 20.43 0.19 44.84 4.40
5645 7841 4.932789 GCACACAGCGGGATCTAA 57.067 55.556 0.00 0.00 0.00 2.10
5646 7842 2.384203 GCACACAGCGGGATCTAAC 58.616 57.895 0.00 0.00 0.00 2.34
5647 7843 0.108138 GCACACAGCGGGATCTAACT 60.108 55.000 0.00 0.00 0.00 2.24
5648 7844 1.927895 CACACAGCGGGATCTAACTC 58.072 55.000 0.00 0.00 0.00 3.01
5649 7845 0.456221 ACACAGCGGGATCTAACTCG 59.544 55.000 0.00 0.00 36.78 4.18
5650 7846 0.456221 CACAGCGGGATCTAACTCGT 59.544 55.000 0.00 0.00 36.04 4.18
5651 7847 0.456221 ACAGCGGGATCTAACTCGTG 59.544 55.000 0.00 0.00 36.04 4.35
5652 7848 0.738975 CAGCGGGATCTAACTCGTGA 59.261 55.000 0.00 0.00 36.04 4.35
5653 7849 1.338337 CAGCGGGATCTAACTCGTGAT 59.662 52.381 0.00 0.00 36.04 3.06
5654 7850 1.609555 AGCGGGATCTAACTCGTGATC 59.390 52.381 0.00 0.00 38.56 2.92
5655 7851 1.609555 GCGGGATCTAACTCGTGATCT 59.390 52.381 0.00 0.00 39.09 2.75
5656 7852 2.605823 GCGGGATCTAACTCGTGATCTG 60.606 54.545 0.00 0.00 39.09 2.90
5657 7853 2.619177 CGGGATCTAACTCGTGATCTGT 59.381 50.000 0.00 0.00 39.09 3.41
5658 7854 3.066900 CGGGATCTAACTCGTGATCTGTT 59.933 47.826 0.00 0.00 39.09 3.16
5659 7855 4.612943 GGGATCTAACTCGTGATCTGTTC 58.387 47.826 0.00 0.00 39.09 3.18
5660 7856 4.283678 GGATCTAACTCGTGATCTGTTCG 58.716 47.826 0.00 0.00 39.09 3.95
5661 7857 4.201930 GGATCTAACTCGTGATCTGTTCGT 60.202 45.833 0.00 0.00 39.09 3.85
5662 7858 4.337985 TCTAACTCGTGATCTGTTCGTC 57.662 45.455 0.00 0.00 0.00 4.20
5663 7859 2.349297 AACTCGTGATCTGTTCGTCC 57.651 50.000 0.00 0.00 0.00 4.79
5664 7860 1.244816 ACTCGTGATCTGTTCGTCCA 58.755 50.000 0.00 0.00 0.00 4.02
5665 7861 1.200252 ACTCGTGATCTGTTCGTCCAG 59.800 52.381 0.00 0.00 0.00 3.86
5666 7862 1.468914 CTCGTGATCTGTTCGTCCAGA 59.531 52.381 8.76 8.76 45.06 3.86
5667 7863 1.468914 TCGTGATCTGTTCGTCCAGAG 59.531 52.381 11.34 0.82 44.25 3.35
5668 7864 1.468914 CGTGATCTGTTCGTCCAGAGA 59.531 52.381 11.34 0.00 44.25 3.10
5669 7865 2.477021 CGTGATCTGTTCGTCCAGAGAG 60.477 54.545 11.34 1.82 44.25 3.20
5670 7866 2.750166 GTGATCTGTTCGTCCAGAGAGA 59.250 50.000 11.34 0.00 44.25 3.10
5671 7867 3.191581 GTGATCTGTTCGTCCAGAGAGAA 59.808 47.826 11.34 0.00 44.25 2.87
5672 7868 3.826729 TGATCTGTTCGTCCAGAGAGAAA 59.173 43.478 11.34 0.00 44.25 2.52
5673 7869 3.644884 TCTGTTCGTCCAGAGAGAAAC 57.355 47.619 3.24 0.00 36.57 2.78
5674 7870 2.031069 TCTGTTCGTCCAGAGAGAAACG 60.031 50.000 3.24 0.00 36.57 3.60
5675 7871 1.951602 TGTTCGTCCAGAGAGAAACGA 59.048 47.619 0.00 0.00 41.89 3.85
5676 7872 2.287427 TGTTCGTCCAGAGAGAAACGAC 60.287 50.000 0.00 0.00 43.13 4.34
5677 7873 0.879765 TCGTCCAGAGAGAAACGACC 59.120 55.000 0.00 0.00 39.04 4.79
5678 7874 0.882474 CGTCCAGAGAGAAACGACCT 59.118 55.000 0.00 0.00 37.31 3.85
5679 7875 2.082231 CGTCCAGAGAGAAACGACCTA 58.918 52.381 0.00 0.00 37.31 3.08
5680 7876 2.486982 CGTCCAGAGAGAAACGACCTAA 59.513 50.000 0.00 0.00 37.31 2.69
5681 7877 3.670091 CGTCCAGAGAGAAACGACCTAAC 60.670 52.174 0.00 0.00 37.31 2.34
5682 7878 2.824341 TCCAGAGAGAAACGACCTAACC 59.176 50.000 0.00 0.00 0.00 2.85
5683 7879 2.561419 CCAGAGAGAAACGACCTAACCA 59.439 50.000 0.00 0.00 0.00 3.67
5684 7880 3.576648 CAGAGAGAAACGACCTAACCAC 58.423 50.000 0.00 0.00 0.00 4.16
5685 7881 3.256136 CAGAGAGAAACGACCTAACCACT 59.744 47.826 0.00 0.00 0.00 4.00
5686 7882 4.458295 CAGAGAGAAACGACCTAACCACTA 59.542 45.833 0.00 0.00 0.00 2.74
5687 7883 4.701171 AGAGAGAAACGACCTAACCACTAG 59.299 45.833 0.00 0.00 0.00 2.57
5688 7884 3.193056 AGAGAAACGACCTAACCACTAGC 59.807 47.826 0.00 0.00 0.00 3.42
5689 7885 2.895404 AGAAACGACCTAACCACTAGCA 59.105 45.455 0.00 0.00 0.00 3.49
5690 7886 2.738013 AACGACCTAACCACTAGCAC 57.262 50.000 0.00 0.00 0.00 4.40
5691 7887 1.624336 ACGACCTAACCACTAGCACA 58.376 50.000 0.00 0.00 0.00 4.57
5692 7888 2.176889 ACGACCTAACCACTAGCACAT 58.823 47.619 0.00 0.00 0.00 3.21
5693 7889 2.094182 ACGACCTAACCACTAGCACATG 60.094 50.000 0.00 0.00 0.00 3.21
5694 7890 2.738643 CGACCTAACCACTAGCACATGG 60.739 54.545 0.00 0.00 42.13 3.66
5695 7891 1.065418 ACCTAACCACTAGCACATGGC 60.065 52.381 0.00 0.00 39.84 4.40
5712 7908 1.604604 GGCAACACTTGTGCCTAAGA 58.395 50.000 8.18 0.00 44.72 2.10
5713 7909 1.266989 GGCAACACTTGTGCCTAAGAC 59.733 52.381 8.18 0.00 44.72 3.01
5714 7910 1.266989 GCAACACTTGTGCCTAAGACC 59.733 52.381 0.10 0.00 0.00 3.85
5715 7911 2.851195 CAACACTTGTGCCTAAGACCT 58.149 47.619 0.10 0.00 0.00 3.85
5716 7912 3.214328 CAACACTTGTGCCTAAGACCTT 58.786 45.455 0.10 0.00 0.00 3.50
5717 7913 3.127425 ACACTTGTGCCTAAGACCTTC 57.873 47.619 0.10 0.00 0.00 3.46
5718 7914 2.706190 ACACTTGTGCCTAAGACCTTCT 59.294 45.455 0.10 0.00 0.00 2.85
5719 7915 3.136626 ACACTTGTGCCTAAGACCTTCTT 59.863 43.478 0.10 0.00 40.35 2.52
5720 7916 4.137543 CACTTGTGCCTAAGACCTTCTTT 58.862 43.478 4.28 0.00 37.89 2.52
5721 7917 4.023707 CACTTGTGCCTAAGACCTTCTTTG 60.024 45.833 4.28 0.00 37.89 2.77
5722 7918 3.857157 TGTGCCTAAGACCTTCTTTGT 57.143 42.857 0.00 0.00 37.89 2.83
5723 7919 4.164843 TGTGCCTAAGACCTTCTTTGTT 57.835 40.909 0.00 0.00 37.89 2.83
5724 7920 4.532834 TGTGCCTAAGACCTTCTTTGTTT 58.467 39.130 0.00 0.00 37.89 2.83
5725 7921 4.578928 TGTGCCTAAGACCTTCTTTGTTTC 59.421 41.667 0.00 0.00 37.89 2.78
5726 7922 4.822350 GTGCCTAAGACCTTCTTTGTTTCT 59.178 41.667 0.00 0.00 37.89 2.52
5727 7923 5.995897 GTGCCTAAGACCTTCTTTGTTTCTA 59.004 40.000 0.00 0.00 37.89 2.10
5728 7924 6.655425 GTGCCTAAGACCTTCTTTGTTTCTAT 59.345 38.462 0.00 0.00 37.89 1.98
5729 7925 7.175119 GTGCCTAAGACCTTCTTTGTTTCTATT 59.825 37.037 0.00 0.00 37.89 1.73
5730 7926 8.380099 TGCCTAAGACCTTCTTTGTTTCTATTA 58.620 33.333 0.00 0.00 37.89 0.98
5731 7927 9.397280 GCCTAAGACCTTCTTTGTTTCTATTAT 57.603 33.333 0.00 0.00 37.89 1.28
5741 7937 8.589701 TCTTTGTTTCTATTATTTCCTTCCCC 57.410 34.615 0.00 0.00 0.00 4.81
5742 7938 8.174085 TCTTTGTTTCTATTATTTCCTTCCCCA 58.826 33.333 0.00 0.00 0.00 4.96
5743 7939 7.954666 TTGTTTCTATTATTTCCTTCCCCAG 57.045 36.000 0.00 0.00 0.00 4.45
5744 7940 7.039722 TGTTTCTATTATTTCCTTCCCCAGT 57.960 36.000 0.00 0.00 0.00 4.00
5745 7941 7.475299 TGTTTCTATTATTTCCTTCCCCAGTT 58.525 34.615 0.00 0.00 0.00 3.16
5746 7942 7.953493 TGTTTCTATTATTTCCTTCCCCAGTTT 59.047 33.333 0.00 0.00 0.00 2.66
5747 7943 7.954666 TTCTATTATTTCCTTCCCCAGTTTG 57.045 36.000 0.00 0.00 0.00 2.93
5748 7944 5.891551 TCTATTATTTCCTTCCCCAGTTTGC 59.108 40.000 0.00 0.00 0.00 3.68
5749 7945 1.644509 ATTTCCTTCCCCAGTTTGCC 58.355 50.000 0.00 0.00 0.00 4.52
5750 7946 0.471022 TTTCCTTCCCCAGTTTGCCC 60.471 55.000 0.00 0.00 0.00 5.36
5751 7947 1.660019 TTCCTTCCCCAGTTTGCCCA 61.660 55.000 0.00 0.00 0.00 5.36
5752 7948 1.079073 CCTTCCCCAGTTTGCCCAT 59.921 57.895 0.00 0.00 0.00 4.00
5753 7949 0.334676 CCTTCCCCAGTTTGCCCATA 59.665 55.000 0.00 0.00 0.00 2.74
5754 7950 1.474330 CTTCCCCAGTTTGCCCATAC 58.526 55.000 0.00 0.00 0.00 2.39
5755 7951 0.040499 TTCCCCAGTTTGCCCATACC 59.960 55.000 0.00 0.00 0.00 2.73
5756 7952 0.849094 TCCCCAGTTTGCCCATACCT 60.849 55.000 0.00 0.00 0.00 3.08
5757 7953 0.395724 CCCCAGTTTGCCCATACCTC 60.396 60.000 0.00 0.00 0.00 3.85
5758 7954 0.748005 CCCAGTTTGCCCATACCTCG 60.748 60.000 0.00 0.00 0.00 4.63
5759 7955 0.748005 CCAGTTTGCCCATACCTCGG 60.748 60.000 0.00 0.00 0.00 4.63
5760 7956 0.035439 CAGTTTGCCCATACCTCGGT 60.035 55.000 0.00 0.00 0.00 4.69
5761 7957 0.696501 AGTTTGCCCATACCTCGGTT 59.303 50.000 0.00 0.00 0.00 4.44
5762 7958 1.074889 AGTTTGCCCATACCTCGGTTT 59.925 47.619 0.00 0.00 0.00 3.27
5763 7959 1.890489 GTTTGCCCATACCTCGGTTTT 59.110 47.619 0.00 0.00 0.00 2.43
5764 7960 1.540267 TTGCCCATACCTCGGTTTTG 58.460 50.000 0.00 0.00 0.00 2.44
5765 7961 0.322997 TGCCCATACCTCGGTTTTGG 60.323 55.000 9.59 9.59 33.02 3.28
5766 7962 1.035385 GCCCATACCTCGGTTTTGGG 61.035 60.000 22.89 22.89 45.45 4.12
5767 7963 0.621609 CCCATACCTCGGTTTTGGGA 59.378 55.000 22.84 0.00 45.49 4.37
5768 7964 1.004979 CCCATACCTCGGTTTTGGGAA 59.995 52.381 22.84 0.00 45.49 3.97
5769 7965 2.365582 CCATACCTCGGTTTTGGGAAG 58.634 52.381 8.95 0.00 30.99 3.46
5770 7966 2.290705 CCATACCTCGGTTTTGGGAAGT 60.291 50.000 8.95 0.00 30.99 3.01
5771 7967 3.418047 CATACCTCGGTTTTGGGAAGTT 58.582 45.455 0.00 0.00 0.00 2.66
5772 7968 2.447408 ACCTCGGTTTTGGGAAGTTT 57.553 45.000 0.00 0.00 0.00 2.66
5773 7969 2.304092 ACCTCGGTTTTGGGAAGTTTC 58.696 47.619 0.00 0.00 0.00 2.78
5774 7970 2.303175 CCTCGGTTTTGGGAAGTTTCA 58.697 47.619 0.00 0.00 0.00 2.69
5775 7971 2.691011 CCTCGGTTTTGGGAAGTTTCAA 59.309 45.455 0.00 0.00 0.00 2.69
5776 7972 3.490249 CCTCGGTTTTGGGAAGTTTCAAC 60.490 47.826 0.00 0.00 0.00 3.18
5777 7973 2.427812 TCGGTTTTGGGAAGTTTCAACC 59.572 45.455 0.00 0.00 0.00 3.77
5778 7974 2.482316 CGGTTTTGGGAAGTTTCAACCC 60.482 50.000 0.00 0.00 43.51 4.11
5785 7981 4.481368 GGGAAGTTTCAACCCACTTTTT 57.519 40.909 0.00 0.00 42.81 1.94
5786 7982 4.439057 GGGAAGTTTCAACCCACTTTTTC 58.561 43.478 0.00 0.00 42.81 2.29
5787 7983 4.161565 GGGAAGTTTCAACCCACTTTTTCT 59.838 41.667 0.00 0.00 42.81 2.52
5788 7984 5.338056 GGGAAGTTTCAACCCACTTTTTCTT 60.338 40.000 0.00 0.00 42.81 2.52
5789 7985 5.810587 GGAAGTTTCAACCCACTTTTTCTTC 59.189 40.000 0.00 0.00 33.22 2.87
5790 7986 4.993905 AGTTTCAACCCACTTTTTCTTCG 58.006 39.130 0.00 0.00 0.00 3.79
5791 7987 4.461431 AGTTTCAACCCACTTTTTCTTCGT 59.539 37.500 0.00 0.00 0.00 3.85
5792 7988 5.047590 AGTTTCAACCCACTTTTTCTTCGTT 60.048 36.000 0.00 0.00 0.00 3.85
5793 7989 4.364415 TCAACCCACTTTTTCTTCGTTG 57.636 40.909 0.00 0.00 0.00 4.10
5794 7990 2.857748 CAACCCACTTTTTCTTCGTTGC 59.142 45.455 0.00 0.00 0.00 4.17
5795 7991 1.064952 ACCCACTTTTTCTTCGTTGCG 59.935 47.619 0.00 0.00 0.00 4.85
5796 7992 1.599419 CCCACTTTTTCTTCGTTGCGG 60.599 52.381 0.00 0.00 0.00 5.69
5797 7993 1.064952 CCACTTTTTCTTCGTTGCGGT 59.935 47.619 0.00 0.00 0.00 5.68
5798 7994 2.478879 CCACTTTTTCTTCGTTGCGGTT 60.479 45.455 0.00 0.00 0.00 4.44
5799 7995 3.175929 CACTTTTTCTTCGTTGCGGTTT 58.824 40.909 0.00 0.00 0.00 3.27
5800 7996 3.610677 CACTTTTTCTTCGTTGCGGTTTT 59.389 39.130 0.00 0.00 0.00 2.43
5801 7997 4.090786 CACTTTTTCTTCGTTGCGGTTTTT 59.909 37.500 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 3.373439 GCCATGACAGATTCTGTGAACTC 59.627 47.826 23.57 9.45 45.44 3.01
458 631 1.202545 GGGATGCCGTAGTCTTCTTCC 60.203 57.143 0.00 0.00 0.00 3.46
653 835 1.272212 GCTAGCTAGAGACTCCATGCC 59.728 57.143 25.15 0.00 0.00 4.40
712 900 7.042797 AGTCATGTGCAAAATTCACTAAACT 57.957 32.000 0.00 0.00 35.58 2.66
1064 1380 0.323360 GCCACCATTTCCAGCTACCA 60.323 55.000 0.00 0.00 0.00 3.25
1190 1510 1.470890 CGTTCACCGGCCATAACAATT 59.529 47.619 0.00 0.00 0.00 2.32
1511 2582 6.601613 CACTTCTATTTATTAAGGGTGTGGCA 59.398 38.462 0.00 0.00 0.00 4.92
1512 2583 6.826741 TCACTTCTATTTATTAAGGGTGTGGC 59.173 38.462 0.00 0.00 0.00 5.01
1524 2595 6.963322 AGGTTCAAGCCTCACTTCTATTTAT 58.037 36.000 0.00 0.00 36.04 1.40
1538 2609 1.315981 GGCTAGCCAAGGTTCAAGCC 61.316 60.000 29.33 0.00 42.40 4.35
1559 2630 4.141482 TGAGGGTATAGAAAATGAGGTGGC 60.141 45.833 0.00 0.00 0.00 5.01
1610 2682 3.655615 ATCTCCTCCGTTCTGAGTAGT 57.344 47.619 0.00 0.00 0.00 2.73
1696 2769 7.543520 GGATTGAGAATTGTCCTCATTCAAAAC 59.456 37.037 14.49 0.00 40.25 2.43
1712 2785 5.728741 ACTGGAAGAGGTAAGGATTGAGAAT 59.271 40.000 0.00 0.00 37.43 2.40
1969 3193 7.013083 GTCTATCTCGTCTTGGAAATAGTGGTA 59.987 40.741 0.00 0.00 0.00 3.25
2174 3398 4.765281 ATCGCGCAAAATTCATTTCATG 57.235 36.364 8.75 0.00 0.00 3.07
2327 3559 1.002430 ACATCGTCTGCCAAGTCATGT 59.998 47.619 0.00 0.00 0.00 3.21
2364 3596 5.818136 AGGTTGAAATCACCATTATCGTG 57.182 39.130 0.00 0.00 0.00 4.35
2393 3625 2.941720 CAGCCCTCTAATGTCTTTGCTC 59.058 50.000 0.00 0.00 0.00 4.26
2417 3649 2.033801 GTGTGACATGTCTTGCAAGCTT 59.966 45.455 25.55 11.69 0.00 3.74
2991 4237 4.957606 AGAGAAGGAGAAACCCTCTAGA 57.042 45.455 0.00 0.00 39.34 2.43
3169 4421 8.697067 CAAAGAAATGCAACTACATTTCTTCAG 58.303 33.333 30.34 24.45 42.12 3.02
3217 4471 7.546358 AGAAATTTGAATATGCGATTGGACAA 58.454 30.769 0.00 0.00 0.00 3.18
3292 5362 8.986477 ATGTTTATCTTAAAGGCACAATGTTC 57.014 30.769 0.00 0.00 0.00 3.18
3425 5517 9.784531 ACACATGAGTCTTATTATCCCATTAAG 57.215 33.333 0.00 0.00 0.00 1.85
3507 5606 5.514169 TCCCACCTGTCAAAATATGCAATA 58.486 37.500 0.00 0.00 0.00 1.90
3536 5636 0.036022 GGGAAGTGAGTCAGCAGCTT 59.964 55.000 0.00 0.00 0.00 3.74
3576 5676 5.811796 TTGTAGTGGTGTAAAGAGCCTTA 57.188 39.130 0.00 0.00 0.00 2.69
3617 5717 0.731417 CGCTCCATGCTCTTTTCTGG 59.269 55.000 0.00 0.00 40.11 3.86
3870 5998 4.398358 AGATTACTCGATGAAAGTCGGTCA 59.602 41.667 0.00 0.00 41.74 4.02
3887 6015 6.575162 AAAACATGGGTCAGTTGAGATTAC 57.425 37.500 0.00 0.00 0.00 1.89
3944 6074 7.829211 TCAATTCTTATTACTTACTGGCTTGCT 59.171 33.333 0.00 0.00 0.00 3.91
4044 6179 2.765699 AGGGGCGCACATATTTTGAATT 59.234 40.909 13.89 0.00 0.00 2.17
4047 6182 2.719531 TAGGGGCGCACATATTTTGA 57.280 45.000 13.89 0.00 0.00 2.69
4148 6287 5.221048 CCACTGTAAGAAGAAAAACACAGGG 60.221 44.000 0.00 0.00 38.13 4.45
4153 6292 4.274147 TGCCCACTGTAAGAAGAAAAACA 58.726 39.130 0.00 0.00 37.43 2.83
4154 6293 4.911514 TGCCCACTGTAAGAAGAAAAAC 57.088 40.909 0.00 0.00 37.43 2.43
4224 6364 2.040178 GTCCTCGGATGTAGGGACATT 58.960 52.381 8.12 0.00 46.64 2.71
4226 6366 3.202548 GTCCTCGGATGTAGGGACA 57.797 57.895 8.12 0.00 45.23 4.02
4239 6395 6.570692 TGATTCCGTTTCTTATGTAGTCCTC 58.429 40.000 0.00 0.00 0.00 3.71
4247 6403 5.817296 TGAGGTGATGATTCCGTTTCTTATG 59.183 40.000 0.00 0.00 0.00 1.90
4248 6404 5.989477 TGAGGTGATGATTCCGTTTCTTAT 58.011 37.500 0.00 0.00 0.00 1.73
4268 6424 1.972872 AAACAAGTGGTGCTCCTGAG 58.027 50.000 6.34 0.00 34.23 3.35
4331 6487 5.067273 ACCCGATGAATGTTGTCTTTGTTA 58.933 37.500 0.00 0.00 0.00 2.41
4513 6671 4.586421 TGCCTATTTTGGTCAATGTCAACA 59.414 37.500 0.00 0.00 0.00 3.33
4516 6674 5.015515 TCATGCCTATTTTGGTCAATGTCA 58.984 37.500 0.00 0.00 0.00 3.58
4545 6703 8.402798 TCCTGCATTAGACAAAAACAGAAATA 57.597 30.769 0.00 0.00 0.00 1.40
4550 6709 6.258230 TCATCCTGCATTAGACAAAAACAG 57.742 37.500 0.00 0.00 0.00 3.16
4653 6813 2.299993 TCACTCGCAATCATCTCCAC 57.700 50.000 0.00 0.00 0.00 4.02
4808 6971 3.846588 ACATCCTGGTGTAATCCTCAAGT 59.153 43.478 0.00 0.00 0.00 3.16
4835 6998 7.812690 TGTGCTAGAATGCATGATTTAGAAT 57.187 32.000 0.00 0.00 45.23 2.40
4925 7103 8.327941 ACACATATGGTAATGATGTAGAATGC 57.672 34.615 7.80 0.00 32.58 3.56
4932 7110 8.579850 ACTTGAAACACATATGGTAATGATGT 57.420 30.769 7.80 0.00 34.11 3.06
4941 7119 9.093970 TCGTCTTTATACTTGAAACACATATGG 57.906 33.333 7.80 0.00 0.00 2.74
5012 7190 2.248280 TATCACACACCGCAACACTT 57.752 45.000 0.00 0.00 0.00 3.16
5090 7272 7.448469 GCCACCCAATACTATTCTCATACATTT 59.552 37.037 0.00 0.00 0.00 2.32
5116 7298 1.593070 GCACATCGTCATAAAGCTGCG 60.593 52.381 0.00 0.00 0.00 5.18
5138 7320 4.188462 CCACCTATTGCACGAGAACAATA 58.812 43.478 0.00 0.00 37.63 1.90
5147 7329 4.142491 TGAATTTAAGCCACCTATTGCACG 60.142 41.667 0.00 0.00 0.00 5.34
5169 7351 3.276857 ACATAGAGCATTGCTGGAACTG 58.723 45.455 17.51 8.54 39.88 3.16
5216 7399 2.237392 GAGATTGGTGCCCTTGTAGACT 59.763 50.000 0.00 0.00 0.00 3.24
5217 7400 2.027192 TGAGATTGGTGCCCTTGTAGAC 60.027 50.000 0.00 0.00 0.00 2.59
5218 7401 2.265367 TGAGATTGGTGCCCTTGTAGA 58.735 47.619 0.00 0.00 0.00 2.59
5242 7435 3.825143 AATGAGTGTTTTGCTTTGCCT 57.175 38.095 0.00 0.00 0.00 4.75
5274 7468 1.135333 GACAACCCCGTTTGCAAAGAA 59.865 47.619 13.26 0.00 0.00 2.52
5292 7486 5.220719 CCCCGTCGTAAAATTGGAAATAGAC 60.221 44.000 0.00 0.00 0.00 2.59
5294 7488 4.035909 CCCCCGTCGTAAAATTGGAAATAG 59.964 45.833 0.00 0.00 0.00 1.73
5295 7489 3.946558 CCCCCGTCGTAAAATTGGAAATA 59.053 43.478 0.00 0.00 0.00 1.40
5318 7514 8.243426 GGTTTTATTTCACTTGTCTATGCATGA 58.757 33.333 10.16 1.87 0.00 3.07
5382 7578 8.977412 CCCACCATAGAAAGTTTTACCAATTAT 58.023 33.333 0.00 0.00 0.00 1.28
5385 7581 6.319715 ACCCACCATAGAAAGTTTTACCAAT 58.680 36.000 0.00 0.00 0.00 3.16
5416 7612 9.674824 CTCAATCATATTTTATCTTTGGTGAGC 57.325 33.333 0.00 0.00 0.00 4.26
5435 7631 5.068198 GGCCAATTTGCTTCTATCTCAATCA 59.932 40.000 0.00 0.00 0.00 2.57
5436 7632 5.301298 AGGCCAATTTGCTTCTATCTCAATC 59.699 40.000 5.01 0.00 0.00 2.67
5437 7633 5.206587 AGGCCAATTTGCTTCTATCTCAAT 58.793 37.500 5.01 0.00 0.00 2.57
5439 7635 4.240881 AGGCCAATTTGCTTCTATCTCA 57.759 40.909 5.01 0.00 0.00 3.27
5440 7636 5.588958 AAAGGCCAATTTGCTTCTATCTC 57.411 39.130 5.01 0.00 0.00 2.75
5444 7640 4.561326 GCAGAAAAGGCCAATTTGCTTCTA 60.561 41.667 5.01 0.00 0.00 2.10
5457 7653 1.241315 TAACAGCGGGCAGAAAAGGC 61.241 55.000 0.00 0.00 0.00 4.35
5458 7654 0.521735 GTAACAGCGGGCAGAAAAGG 59.478 55.000 0.00 0.00 0.00 3.11
5459 7655 1.234821 TGTAACAGCGGGCAGAAAAG 58.765 50.000 0.00 0.00 0.00 2.27
5460 7656 1.681538 TTGTAACAGCGGGCAGAAAA 58.318 45.000 0.00 0.00 0.00 2.29
5461 7657 1.606668 CTTTGTAACAGCGGGCAGAAA 59.393 47.619 0.00 0.00 0.00 2.52
5462 7658 1.234821 CTTTGTAACAGCGGGCAGAA 58.765 50.000 0.00 0.00 0.00 3.02
5463 7659 0.107831 ACTTTGTAACAGCGGGCAGA 59.892 50.000 0.00 0.00 0.00 4.26
5464 7660 1.463444 GTACTTTGTAACAGCGGGCAG 59.537 52.381 0.00 0.00 0.00 4.85
5465 7661 1.202663 TGTACTTTGTAACAGCGGGCA 60.203 47.619 0.00 0.00 0.00 5.36
5466 7662 1.515081 TGTACTTTGTAACAGCGGGC 58.485 50.000 0.00 0.00 0.00 6.13
5467 7663 3.312973 TGTTTGTACTTTGTAACAGCGGG 59.687 43.478 0.00 0.00 0.00 6.13
5468 7664 4.539509 TGTTTGTACTTTGTAACAGCGG 57.460 40.909 0.00 0.00 0.00 5.52
5469 7665 6.356977 CAGATTGTTTGTACTTTGTAACAGCG 59.643 38.462 0.00 0.00 32.67 5.18
5470 7666 7.193595 ACAGATTGTTTGTACTTTGTAACAGC 58.806 34.615 0.00 0.00 32.67 4.40
5471 7667 9.864034 CTACAGATTGTTTGTACTTTGTAACAG 57.136 33.333 0.00 0.00 32.67 3.16
5472 7668 8.832521 CCTACAGATTGTTTGTACTTTGTAACA 58.167 33.333 0.00 0.00 0.00 2.41
5473 7669 8.833493 ACCTACAGATTGTTTGTACTTTGTAAC 58.167 33.333 0.00 0.00 0.00 2.50
5474 7670 8.967664 ACCTACAGATTGTTTGTACTTTGTAA 57.032 30.769 0.00 0.00 0.00 2.41
5475 7671 8.426489 AGACCTACAGATTGTTTGTACTTTGTA 58.574 33.333 0.00 0.00 0.00 2.41
5476 7672 7.280356 AGACCTACAGATTGTTTGTACTTTGT 58.720 34.615 0.00 0.00 0.00 2.83
5477 7673 7.730364 AGACCTACAGATTGTTTGTACTTTG 57.270 36.000 0.00 0.00 0.00 2.77
5478 7674 7.444487 GGAAGACCTACAGATTGTTTGTACTTT 59.556 37.037 0.00 0.00 0.00 2.66
5479 7675 6.935208 GGAAGACCTACAGATTGTTTGTACTT 59.065 38.462 0.00 0.00 0.00 2.24
5480 7676 6.042781 TGGAAGACCTACAGATTGTTTGTACT 59.957 38.462 0.00 0.00 37.04 2.73
5481 7677 6.147328 GTGGAAGACCTACAGATTGTTTGTAC 59.853 42.308 0.00 0.00 37.04 2.90
5482 7678 6.183361 TGTGGAAGACCTACAGATTGTTTGTA 60.183 38.462 0.00 0.00 37.04 2.41
5483 7679 5.063880 GTGGAAGACCTACAGATTGTTTGT 58.936 41.667 0.00 0.00 37.04 2.83
5484 7680 5.063204 TGTGGAAGACCTACAGATTGTTTG 58.937 41.667 0.00 0.00 37.04 2.93
5485 7681 5.304686 TGTGGAAGACCTACAGATTGTTT 57.695 39.130 0.00 0.00 37.04 2.83
5486 7682 4.263068 CCTGTGGAAGACCTACAGATTGTT 60.263 45.833 9.62 0.00 42.35 2.83
5487 7683 3.261897 CCTGTGGAAGACCTACAGATTGT 59.738 47.826 9.62 0.00 42.35 2.71
5488 7684 3.369892 CCCTGTGGAAGACCTACAGATTG 60.370 52.174 9.62 0.00 42.35 2.67
5489 7685 2.840651 CCCTGTGGAAGACCTACAGATT 59.159 50.000 9.62 0.00 42.35 2.40
5490 7686 2.225650 ACCCTGTGGAAGACCTACAGAT 60.226 50.000 9.62 0.00 42.35 2.90
5491 7687 1.149288 ACCCTGTGGAAGACCTACAGA 59.851 52.381 9.62 0.00 42.35 3.41
5492 7688 1.645710 ACCCTGTGGAAGACCTACAG 58.354 55.000 0.00 0.00 40.98 2.74
5493 7689 3.263369 TTACCCTGTGGAAGACCTACA 57.737 47.619 0.00 0.00 37.04 2.74
5494 7690 3.307269 GGTTTACCCTGTGGAAGACCTAC 60.307 52.174 0.00 0.00 37.04 3.18
5495 7691 2.908351 GGTTTACCCTGTGGAAGACCTA 59.092 50.000 0.00 0.00 37.04 3.08
5496 7692 1.703513 GGTTTACCCTGTGGAAGACCT 59.296 52.381 0.00 0.00 37.04 3.85
5497 7693 2.195741 GGTTTACCCTGTGGAAGACC 57.804 55.000 0.00 0.00 34.81 3.85
5509 7705 6.569780 CATAAGGTGCAAAATAGGGTTTACC 58.430 40.000 0.00 0.00 40.67 2.85
5525 7721 2.097466 CCTTTAACTGGCGCATAAGGTG 59.903 50.000 10.83 0.00 0.00 4.00
5526 7722 2.365582 CCTTTAACTGGCGCATAAGGT 58.634 47.619 10.83 4.53 0.00 3.50
5527 7723 1.065551 GCCTTTAACTGGCGCATAAGG 59.934 52.381 10.83 12.66 41.03 2.69
5528 7724 2.475200 GCCTTTAACTGGCGCATAAG 57.525 50.000 10.83 6.04 41.03 1.73
5550 7746 1.404315 GGGTTGTGCGTGTTGGAAAAA 60.404 47.619 0.00 0.00 0.00 1.94
5551 7747 0.173708 GGGTTGTGCGTGTTGGAAAA 59.826 50.000 0.00 0.00 0.00 2.29
5552 7748 0.681564 AGGGTTGTGCGTGTTGGAAA 60.682 50.000 0.00 0.00 0.00 3.13
5553 7749 1.077357 AGGGTTGTGCGTGTTGGAA 60.077 52.632 0.00 0.00 0.00 3.53
5554 7750 1.525077 GAGGGTTGTGCGTGTTGGA 60.525 57.895 0.00 0.00 0.00 3.53
5555 7751 1.507141 GAGAGGGTTGTGCGTGTTGG 61.507 60.000 0.00 0.00 0.00 3.77
5556 7752 0.532862 AGAGAGGGTTGTGCGTGTTG 60.533 55.000 0.00 0.00 0.00 3.33
5557 7753 0.532862 CAGAGAGGGTTGTGCGTGTT 60.533 55.000 0.00 0.00 0.00 3.32
5558 7754 1.069765 CAGAGAGGGTTGTGCGTGT 59.930 57.895 0.00 0.00 0.00 4.49
5559 7755 1.069765 ACAGAGAGGGTTGTGCGTG 59.930 57.895 0.00 0.00 0.00 5.34
5560 7756 1.069765 CACAGAGAGGGTTGTGCGT 59.930 57.895 0.00 0.00 38.35 5.24
5561 7757 0.668706 CTCACAGAGAGGGTTGTGCG 60.669 60.000 0.00 0.00 43.31 5.34
5562 7758 3.223661 CTCACAGAGAGGGTTGTGC 57.776 57.895 0.00 0.00 43.31 4.57
5570 7766 1.897225 CTGGCCCACCTCACAGAGAG 61.897 65.000 0.00 0.00 44.31 3.20
5571 7767 1.915266 CTGGCCCACCTCACAGAGA 60.915 63.158 0.00 0.00 36.63 3.10
5572 7768 2.667418 CTGGCCCACCTCACAGAG 59.333 66.667 0.00 0.00 36.63 3.35
5573 7769 3.640407 GCTGGCCCACCTCACAGA 61.640 66.667 0.00 0.00 36.63 3.41
5574 7770 4.729918 GGCTGGCCCACCTCACAG 62.730 72.222 0.00 0.00 36.63 3.66
5584 7780 3.843893 AAAATGATAAATGGGCTGGCC 57.156 42.857 14.23 14.23 0.00 5.36
5603 7799 7.308288 GCACCTTTGAAAAACCAGAAAGAAAAA 60.308 33.333 0.00 0.00 0.00 1.94
5604 7800 6.148645 GCACCTTTGAAAAACCAGAAAGAAAA 59.851 34.615 0.00 0.00 0.00 2.29
5605 7801 5.641636 GCACCTTTGAAAAACCAGAAAGAAA 59.358 36.000 0.00 0.00 0.00 2.52
5606 7802 5.175127 GCACCTTTGAAAAACCAGAAAGAA 58.825 37.500 0.00 0.00 0.00 2.52
5607 7803 4.221703 TGCACCTTTGAAAAACCAGAAAGA 59.778 37.500 0.00 0.00 0.00 2.52
5608 7804 4.329801 GTGCACCTTTGAAAAACCAGAAAG 59.670 41.667 5.22 0.00 0.00 2.62
5609 7805 4.249661 GTGCACCTTTGAAAAACCAGAAA 58.750 39.130 5.22 0.00 0.00 2.52
5610 7806 3.259374 TGTGCACCTTTGAAAAACCAGAA 59.741 39.130 15.69 0.00 0.00 3.02
5611 7807 2.828520 TGTGCACCTTTGAAAAACCAGA 59.171 40.909 15.69 0.00 0.00 3.86
5612 7808 2.929398 GTGTGCACCTTTGAAAAACCAG 59.071 45.455 15.69 0.00 0.00 4.00
5613 7809 2.300152 TGTGTGCACCTTTGAAAAACCA 59.700 40.909 15.69 0.00 0.00 3.67
5614 7810 2.929398 CTGTGTGCACCTTTGAAAAACC 59.071 45.455 15.69 0.00 0.00 3.27
5615 7811 2.348362 GCTGTGTGCACCTTTGAAAAAC 59.652 45.455 15.69 2.61 42.31 2.43
5616 7812 2.615869 GCTGTGTGCACCTTTGAAAAA 58.384 42.857 15.69 0.00 42.31 1.94
5617 7813 1.468908 CGCTGTGTGCACCTTTGAAAA 60.469 47.619 15.69 0.00 43.06 2.29
5618 7814 0.100325 CGCTGTGTGCACCTTTGAAA 59.900 50.000 15.69 0.00 43.06 2.69
5619 7815 1.723608 CCGCTGTGTGCACCTTTGAA 61.724 55.000 15.69 0.00 43.06 2.69
5620 7816 2.186160 CCGCTGTGTGCACCTTTGA 61.186 57.895 15.69 0.00 43.06 2.69
5621 7817 2.332514 CCGCTGTGTGCACCTTTG 59.667 61.111 15.69 3.13 43.06 2.77
5622 7818 2.697147 ATCCCGCTGTGTGCACCTTT 62.697 55.000 15.69 0.00 43.06 3.11
5623 7819 3.196207 ATCCCGCTGTGTGCACCTT 62.196 57.895 15.69 0.00 43.06 3.50
5624 7820 3.612247 GATCCCGCTGTGTGCACCT 62.612 63.158 15.69 0.00 43.06 4.00
5625 7821 2.238847 TAGATCCCGCTGTGTGCACC 62.239 60.000 15.69 6.37 43.06 5.01
5626 7822 0.391130 TTAGATCCCGCTGTGTGCAC 60.391 55.000 10.75 10.75 43.06 4.57
5627 7823 0.391130 GTTAGATCCCGCTGTGTGCA 60.391 55.000 0.00 0.00 43.06 4.57
5628 7824 0.108138 AGTTAGATCCCGCTGTGTGC 60.108 55.000 0.00 0.00 38.57 4.57
5629 7825 1.799181 CGAGTTAGATCCCGCTGTGTG 60.799 57.143 0.00 0.00 0.00 3.82
5630 7826 0.456221 CGAGTTAGATCCCGCTGTGT 59.544 55.000 0.00 0.00 0.00 3.72
5631 7827 0.456221 ACGAGTTAGATCCCGCTGTG 59.544 55.000 0.00 0.00 0.00 3.66
5632 7828 0.456221 CACGAGTTAGATCCCGCTGT 59.544 55.000 0.00 0.00 0.00 4.40
5633 7829 0.738975 TCACGAGTTAGATCCCGCTG 59.261 55.000 0.00 0.00 0.00 5.18
5634 7830 1.609555 GATCACGAGTTAGATCCCGCT 59.390 52.381 0.00 0.00 35.69 5.52
5635 7831 1.609555 AGATCACGAGTTAGATCCCGC 59.390 52.381 0.00 0.00 41.16 6.13
5636 7832 2.619177 ACAGATCACGAGTTAGATCCCG 59.381 50.000 0.00 0.00 41.16 5.14
5637 7833 4.612943 GAACAGATCACGAGTTAGATCCC 58.387 47.826 0.00 0.00 41.16 3.85
5638 7834 4.201930 ACGAACAGATCACGAGTTAGATCC 60.202 45.833 0.00 0.00 41.16 3.36
5639 7835 4.911053 ACGAACAGATCACGAGTTAGATC 58.089 43.478 0.00 0.00 40.68 2.75
5640 7836 4.201930 GGACGAACAGATCACGAGTTAGAT 60.202 45.833 0.00 0.00 0.00 1.98
5641 7837 3.126514 GGACGAACAGATCACGAGTTAGA 59.873 47.826 0.00 0.00 0.00 2.10
5642 7838 3.119955 TGGACGAACAGATCACGAGTTAG 60.120 47.826 0.00 0.00 0.00 2.34
5643 7839 2.815503 TGGACGAACAGATCACGAGTTA 59.184 45.455 0.00 0.00 0.00 2.24
5644 7840 1.611977 TGGACGAACAGATCACGAGTT 59.388 47.619 0.00 0.00 0.00 3.01
5645 7841 1.200252 CTGGACGAACAGATCACGAGT 59.800 52.381 5.40 0.00 40.97 4.18
5646 7842 1.468914 TCTGGACGAACAGATCACGAG 59.531 52.381 9.19 0.00 42.26 4.18
5647 7843 1.468914 CTCTGGACGAACAGATCACGA 59.531 52.381 12.71 0.00 45.67 4.35
5648 7844 1.468914 TCTCTGGACGAACAGATCACG 59.531 52.381 12.71 0.00 45.67 4.35
5649 7845 2.750166 TCTCTCTGGACGAACAGATCAC 59.250 50.000 12.71 0.00 45.67 3.06
5650 7846 3.073274 TCTCTCTGGACGAACAGATCA 57.927 47.619 12.71 4.34 45.67 2.92
5651 7847 4.170256 GTTTCTCTCTGGACGAACAGATC 58.830 47.826 12.71 0.00 45.67 2.75
5652 7848 3.366476 CGTTTCTCTCTGGACGAACAGAT 60.366 47.826 12.71 0.00 45.67 2.90
5653 7849 2.031069 CGTTTCTCTCTGGACGAACAGA 60.031 50.000 11.96 11.96 44.74 3.41
5654 7850 2.031069 TCGTTTCTCTCTGGACGAACAG 60.031 50.000 0.00 0.00 41.01 3.16
5655 7851 1.951602 TCGTTTCTCTCTGGACGAACA 59.048 47.619 0.00 0.00 41.01 3.18
5656 7852 2.317684 GTCGTTTCTCTCTGGACGAAC 58.682 52.381 0.00 0.00 44.80 3.95
5657 7853 1.268899 GGTCGTTTCTCTCTGGACGAA 59.731 52.381 0.00 0.00 44.80 3.85
5658 7854 0.879765 GGTCGTTTCTCTCTGGACGA 59.120 55.000 0.00 0.00 41.62 4.20
5659 7855 0.882474 AGGTCGTTTCTCTCTGGACG 59.118 55.000 0.00 0.00 36.89 4.79
5660 7856 3.367190 GGTTAGGTCGTTTCTCTCTGGAC 60.367 52.174 0.00 0.00 0.00 4.02
5661 7857 2.824341 GGTTAGGTCGTTTCTCTCTGGA 59.176 50.000 0.00 0.00 0.00 3.86
5662 7858 2.561419 TGGTTAGGTCGTTTCTCTCTGG 59.439 50.000 0.00 0.00 0.00 3.86
5663 7859 3.256136 AGTGGTTAGGTCGTTTCTCTCTG 59.744 47.826 0.00 0.00 0.00 3.35
5664 7860 3.498334 AGTGGTTAGGTCGTTTCTCTCT 58.502 45.455 0.00 0.00 0.00 3.10
5665 7861 3.938289 AGTGGTTAGGTCGTTTCTCTC 57.062 47.619 0.00 0.00 0.00 3.20
5666 7862 3.193056 GCTAGTGGTTAGGTCGTTTCTCT 59.807 47.826 0.00 0.00 0.00 3.10
5667 7863 3.057033 TGCTAGTGGTTAGGTCGTTTCTC 60.057 47.826 0.00 0.00 0.00 2.87
5668 7864 2.895404 TGCTAGTGGTTAGGTCGTTTCT 59.105 45.455 0.00 0.00 0.00 2.52
5669 7865 2.991866 GTGCTAGTGGTTAGGTCGTTTC 59.008 50.000 0.00 0.00 0.00 2.78
5670 7866 2.366266 TGTGCTAGTGGTTAGGTCGTTT 59.634 45.455 0.00 0.00 0.00 3.60
5671 7867 1.965643 TGTGCTAGTGGTTAGGTCGTT 59.034 47.619 0.00 0.00 0.00 3.85
5672 7868 1.624336 TGTGCTAGTGGTTAGGTCGT 58.376 50.000 0.00 0.00 0.00 4.34
5673 7869 2.540515 CATGTGCTAGTGGTTAGGTCG 58.459 52.381 0.00 0.00 0.00 4.79
5674 7870 2.906354 CCATGTGCTAGTGGTTAGGTC 58.094 52.381 0.00 0.00 0.00 3.85
5675 7871 1.065418 GCCATGTGCTAGTGGTTAGGT 60.065 52.381 0.00 0.00 37.81 3.08
5676 7872 1.065491 TGCCATGTGCTAGTGGTTAGG 60.065 52.381 7.54 0.00 42.00 2.69
5677 7873 2.401583 TGCCATGTGCTAGTGGTTAG 57.598 50.000 7.54 0.00 42.00 2.34
5678 7874 2.224646 TGTTGCCATGTGCTAGTGGTTA 60.225 45.455 7.54 0.00 42.00 2.85
5679 7875 1.247567 GTTGCCATGTGCTAGTGGTT 58.752 50.000 7.54 0.00 42.00 3.67
5680 7876 0.110295 TGTTGCCATGTGCTAGTGGT 59.890 50.000 7.54 0.00 42.00 4.16
5681 7877 0.523072 GTGTTGCCATGTGCTAGTGG 59.477 55.000 7.54 0.00 42.00 4.00
5682 7878 1.527034 AGTGTTGCCATGTGCTAGTG 58.473 50.000 7.54 0.00 42.00 2.74
5683 7879 1.881973 CAAGTGTTGCCATGTGCTAGT 59.118 47.619 7.54 0.00 42.00 2.57
5684 7880 1.881973 ACAAGTGTTGCCATGTGCTAG 59.118 47.619 7.54 0.00 42.00 3.42
5685 7881 1.608109 CACAAGTGTTGCCATGTGCTA 59.392 47.619 7.54 0.00 42.00 3.49
5686 7882 0.386476 CACAAGTGTTGCCATGTGCT 59.614 50.000 7.54 0.00 42.00 4.40
5687 7883 2.889578 CACAAGTGTTGCCATGTGC 58.110 52.632 0.00 0.00 37.03 4.57
5688 7884 2.889578 GCACAAGTGTTGCCATGTG 58.110 52.632 1.79 0.00 44.55 3.21
5694 7890 1.266989 GGTCTTAGGCACAAGTGTTGC 59.733 52.381 1.79 0.00 0.00 4.17
5695 7891 2.851195 AGGTCTTAGGCACAAGTGTTG 58.149 47.619 1.79 0.00 0.00 3.33
5696 7892 3.136626 AGAAGGTCTTAGGCACAAGTGTT 59.863 43.478 1.79 0.00 0.00 3.32
5697 7893 2.706190 AGAAGGTCTTAGGCACAAGTGT 59.294 45.455 1.79 0.00 0.00 3.55
5698 7894 3.409026 AGAAGGTCTTAGGCACAAGTG 57.591 47.619 0.00 0.00 0.00 3.16
5699 7895 4.137543 CAAAGAAGGTCTTAGGCACAAGT 58.862 43.478 0.00 0.00 35.27 3.16
5700 7896 4.137543 ACAAAGAAGGTCTTAGGCACAAG 58.862 43.478 0.00 0.00 35.27 3.16
5701 7897 4.164843 ACAAAGAAGGTCTTAGGCACAA 57.835 40.909 0.00 0.00 35.27 3.33
5702 7898 3.857157 ACAAAGAAGGTCTTAGGCACA 57.143 42.857 0.00 0.00 35.27 4.57
5703 7899 4.822350 AGAAACAAAGAAGGTCTTAGGCAC 59.178 41.667 0.00 0.00 35.27 5.01
5704 7900 5.048846 AGAAACAAAGAAGGTCTTAGGCA 57.951 39.130 0.00 0.00 35.27 4.75
5705 7901 7.689446 AATAGAAACAAAGAAGGTCTTAGGC 57.311 36.000 0.00 0.00 35.27 3.93
5715 7911 9.031537 GGGGAAGGAAATAATAGAAACAAAGAA 57.968 33.333 0.00 0.00 0.00 2.52
5716 7912 8.174085 TGGGGAAGGAAATAATAGAAACAAAGA 58.826 33.333 0.00 0.00 0.00 2.52
5717 7913 8.361169 TGGGGAAGGAAATAATAGAAACAAAG 57.639 34.615 0.00 0.00 0.00 2.77
5718 7914 7.953493 ACTGGGGAAGGAAATAATAGAAACAAA 59.047 33.333 0.00 0.00 0.00 2.83
5719 7915 7.475299 ACTGGGGAAGGAAATAATAGAAACAA 58.525 34.615 0.00 0.00 0.00 2.83
5720 7916 7.039722 ACTGGGGAAGGAAATAATAGAAACA 57.960 36.000 0.00 0.00 0.00 2.83
5721 7917 7.956328 AACTGGGGAAGGAAATAATAGAAAC 57.044 36.000 0.00 0.00 0.00 2.78
5722 7918 7.093509 GCAAACTGGGGAAGGAAATAATAGAAA 60.094 37.037 0.00 0.00 0.00 2.52
5723 7919 6.379988 GCAAACTGGGGAAGGAAATAATAGAA 59.620 38.462 0.00 0.00 0.00 2.10
5724 7920 5.891551 GCAAACTGGGGAAGGAAATAATAGA 59.108 40.000 0.00 0.00 0.00 1.98
5725 7921 5.069119 GGCAAACTGGGGAAGGAAATAATAG 59.931 44.000 0.00 0.00 0.00 1.73
5726 7922 4.959839 GGCAAACTGGGGAAGGAAATAATA 59.040 41.667 0.00 0.00 0.00 0.98
5727 7923 3.774766 GGCAAACTGGGGAAGGAAATAAT 59.225 43.478 0.00 0.00 0.00 1.28
5728 7924 3.169908 GGCAAACTGGGGAAGGAAATAA 58.830 45.455 0.00 0.00 0.00 1.40
5729 7925 2.558800 GGGCAAACTGGGGAAGGAAATA 60.559 50.000 0.00 0.00 0.00 1.40
5730 7926 1.644509 GGCAAACTGGGGAAGGAAAT 58.355 50.000 0.00 0.00 0.00 2.17
5731 7927 0.471022 GGGCAAACTGGGGAAGGAAA 60.471 55.000 0.00 0.00 0.00 3.13
5732 7928 1.155155 GGGCAAACTGGGGAAGGAA 59.845 57.895 0.00 0.00 0.00 3.36
5733 7929 1.442886 ATGGGCAAACTGGGGAAGGA 61.443 55.000 0.00 0.00 0.00 3.36
5734 7930 0.334676 TATGGGCAAACTGGGGAAGG 59.665 55.000 0.00 0.00 0.00 3.46
5735 7931 1.474330 GTATGGGCAAACTGGGGAAG 58.526 55.000 0.00 0.00 0.00 3.46
5736 7932 0.040499 GGTATGGGCAAACTGGGGAA 59.960 55.000 0.00 0.00 0.00 3.97
5737 7933 0.849094 AGGTATGGGCAAACTGGGGA 60.849 55.000 0.00 0.00 0.00 4.81
5738 7934 0.395724 GAGGTATGGGCAAACTGGGG 60.396 60.000 0.00 0.00 0.00 4.96
5739 7935 0.748005 CGAGGTATGGGCAAACTGGG 60.748 60.000 0.00 0.00 0.00 4.45
5740 7936 0.748005 CCGAGGTATGGGCAAACTGG 60.748 60.000 0.00 0.00 0.00 4.00
5741 7937 0.035439 ACCGAGGTATGGGCAAACTG 60.035 55.000 0.00 0.00 0.00 3.16
5742 7938 0.696501 AACCGAGGTATGGGCAAACT 59.303 50.000 0.00 0.00 0.00 2.66
5743 7939 1.541379 AAACCGAGGTATGGGCAAAC 58.459 50.000 0.00 0.00 0.00 2.93
5744 7940 1.889829 CAAAACCGAGGTATGGGCAAA 59.110 47.619 0.00 0.00 0.00 3.68
5745 7941 1.540267 CAAAACCGAGGTATGGGCAA 58.460 50.000 0.00 0.00 0.00 4.52
5746 7942 0.322997 CCAAAACCGAGGTATGGGCA 60.323 55.000 15.43 0.00 33.93 5.36
5747 7943 1.035385 CCCAAAACCGAGGTATGGGC 61.035 60.000 24.30 0.00 43.58 5.36
5748 7944 3.184736 CCCAAAACCGAGGTATGGG 57.815 57.895 23.34 23.34 43.88 4.00
5749 7945 2.290705 ACTTCCCAAAACCGAGGTATGG 60.291 50.000 16.00 16.00 35.95 2.74
5750 7946 3.067684 ACTTCCCAAAACCGAGGTATG 57.932 47.619 0.00 0.00 0.00 2.39
5751 7947 3.801307 AACTTCCCAAAACCGAGGTAT 57.199 42.857 0.00 0.00 0.00 2.73
5752 7948 3.117963 TGAAACTTCCCAAAACCGAGGTA 60.118 43.478 0.00 0.00 0.00 3.08
5753 7949 2.304092 GAAACTTCCCAAAACCGAGGT 58.696 47.619 0.00 0.00 0.00 3.85
5754 7950 2.303175 TGAAACTTCCCAAAACCGAGG 58.697 47.619 0.00 0.00 0.00 4.63
5755 7951 3.490249 GGTTGAAACTTCCCAAAACCGAG 60.490 47.826 0.00 0.00 0.00 4.63
5756 7952 2.427812 GGTTGAAACTTCCCAAAACCGA 59.572 45.455 0.00 0.00 0.00 4.69
5757 7953 2.482316 GGGTTGAAACTTCCCAAAACCG 60.482 50.000 0.00 0.00 40.79 4.44
5758 7954 2.502130 TGGGTTGAAACTTCCCAAAACC 59.498 45.455 0.00 0.00 46.78 3.27
5759 7955 3.897141 TGGGTTGAAACTTCCCAAAAC 57.103 42.857 0.00 0.00 46.78 2.43
5764 7960 4.161565 AGAAAAAGTGGGTTGAAACTTCCC 59.838 41.667 0.00 0.00 41.41 3.97
5765 7961 5.339008 AGAAAAAGTGGGTTGAAACTTCC 57.661 39.130 0.00 0.00 35.60 3.46
5766 7962 5.515270 CGAAGAAAAAGTGGGTTGAAACTTC 59.485 40.000 0.00 0.00 35.60 3.01
5767 7963 5.047590 ACGAAGAAAAAGTGGGTTGAAACTT 60.048 36.000 0.00 0.00 38.25 2.66
5768 7964 4.461431 ACGAAGAAAAAGTGGGTTGAAACT 59.539 37.500 0.00 0.00 0.00 2.66
5769 7965 4.740268 ACGAAGAAAAAGTGGGTTGAAAC 58.260 39.130 0.00 0.00 0.00 2.78
5770 7966 5.164954 CAACGAAGAAAAAGTGGGTTGAAA 58.835 37.500 0.00 0.00 36.34 2.69
5771 7967 4.739195 CAACGAAGAAAAAGTGGGTTGAA 58.261 39.130 0.00 0.00 36.34 2.69
5772 7968 3.428316 GCAACGAAGAAAAAGTGGGTTGA 60.428 43.478 5.30 0.00 36.34 3.18
5773 7969 2.857748 GCAACGAAGAAAAAGTGGGTTG 59.142 45.455 0.00 0.00 37.07 3.77
5774 7970 2.478879 CGCAACGAAGAAAAAGTGGGTT 60.479 45.455 0.00 0.00 0.00 4.11
5775 7971 1.064952 CGCAACGAAGAAAAAGTGGGT 59.935 47.619 0.00 0.00 0.00 4.51
5776 7972 1.599419 CCGCAACGAAGAAAAAGTGGG 60.599 52.381 0.00 0.00 0.00 4.61
5777 7973 1.064952 ACCGCAACGAAGAAAAAGTGG 59.935 47.619 0.00 0.00 0.00 4.00
5778 7974 2.468532 ACCGCAACGAAGAAAAAGTG 57.531 45.000 0.00 0.00 0.00 3.16
5779 7975 3.497297 AAACCGCAACGAAGAAAAAGT 57.503 38.095 0.00 0.00 0.00 2.66
5780 7976 4.833469 AAAAACCGCAACGAAGAAAAAG 57.167 36.364 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.