Multiple sequence alignment - TraesCS6D01G064900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G064900 chr6D 100.000 4156 0 0 1 4156 31478700 31482855 0.000000e+00 7675.0
1 TraesCS6D01G064900 chr6D 88.557 201 17 3 3962 4156 30749578 30749378 5.370000e-59 239.0
2 TraesCS6D01G064900 chr6D 92.708 96 7 0 531 626 340997379 340997474 5.600000e-29 139.0
3 TraesCS6D01G064900 chr6A 97.304 1298 35 0 985 2282 31745519 31744222 0.000000e+00 2204.0
4 TraesCS6D01G064900 chr6A 97.923 915 18 1 2316 3230 31744222 31743309 0.000000e+00 1583.0
5 TraesCS6D01G064900 chr6A 94.710 586 25 2 3253 3838 31743241 31742662 0.000000e+00 905.0
6 TraesCS6D01G064900 chr6A 92.323 508 34 4 37 542 31746557 31746053 0.000000e+00 717.0
7 TraesCS6D01G064900 chr6A 95.255 274 8 1 3888 4156 31742368 31742095 2.970000e-116 429.0
8 TraesCS6D01G064900 chr6A 79.452 438 88 2 1055 1491 106895373 106894937 4.040000e-80 309.0
9 TraesCS6D01G064900 chr6A 79.379 451 82 10 1055 1501 106986199 106985756 1.450000e-79 307.0
10 TraesCS6D01G064900 chr6A 91.473 129 9 2 633 761 31746045 31745919 4.270000e-40 176.0
11 TraesCS6D01G064900 chr6A 95.062 81 4 0 2317 2397 557970055 557970135 1.210000e-25 128.0
12 TraesCS6D01G064900 chr6B 96.999 833 25 0 1262 2094 56316828 56315996 0.000000e+00 1400.0
13 TraesCS6D01G064900 chr6B 93.326 854 31 9 2393 3230 56315754 56314911 0.000000e+00 1238.0
14 TraesCS6D01G064900 chr6B 91.928 669 27 18 3239 3888 56314856 56314196 0.000000e+00 911.0
15 TraesCS6D01G064900 chr6B 96.532 346 8 1 838 1183 56317387 56317046 1.680000e-158 569.0
16 TraesCS6D01G064900 chr6B 95.765 307 12 1 134 440 56317935 56317630 1.040000e-135 494.0
17 TraesCS6D01G064900 chr6B 95.238 231 8 2 2081 2311 56315980 56315753 3.050000e-96 363.0
18 TraesCS6D01G064900 chr6B 97.101 207 6 0 3888 4094 56314156 56313950 2.380000e-92 350.0
19 TraesCS6D01G064900 chr6B 94.667 225 9 3 630 852 56317629 56317406 3.080000e-91 346.0
20 TraesCS6D01G064900 chr6B 91.262 103 6 3 526 626 471227562 471227663 2.010000e-28 137.0
21 TraesCS6D01G064900 chr5A 81.111 1260 188 29 979 2219 547612834 547614062 0.000000e+00 963.0
22 TraesCS6D01G064900 chr5A 92.000 100 6 1 540 637 487791966 487791867 5.600000e-29 139.0
23 TraesCS6D01G064900 chr5A 93.590 78 5 0 2317 2394 616651990 616651913 2.630000e-22 117.0
24 TraesCS6D01G064900 chr5B 81.156 1263 179 34 979 2219 526574704 526575929 0.000000e+00 959.0
25 TraesCS6D01G064900 chr5B 83.198 494 56 17 59 543 642365077 642365552 1.070000e-115 427.0
26 TraesCS6D01G064900 chr5B 80.312 513 85 7 998 1501 525452644 525453149 1.410000e-99 374.0
27 TraesCS6D01G064900 chr5B 93.902 82 5 0 2317 2398 321218127 321218046 1.570000e-24 124.0
28 TraesCS6D01G064900 chr5D 79.820 1333 210 31 998 2311 432781795 432783087 0.000000e+00 917.0
29 TraesCS6D01G064900 chr5D 73.234 1345 267 67 981 2268 432933514 432934822 1.800000e-108 403.0
30 TraesCS6D01G064900 chr5D 73.525 1254 235 64 1026 2226 433008084 433009293 1.810000e-103 387.0
31 TraesCS6D01G064900 chr5D 92.593 81 6 0 2317 2397 216627845 216627765 2.630000e-22 117.0
32 TraesCS6D01G064900 chr5D 81.651 109 20 0 2393 2501 432783086 432783194 1.590000e-14 91.6
33 TraesCS6D01G064900 chrUn 79.535 1334 212 33 998 2311 63282944 63281652 0.000000e+00 894.0
34 TraesCS6D01G064900 chrUn 79.535 1334 212 33 998 2311 327299180 327297888 0.000000e+00 894.0
35 TraesCS6D01G064900 chrUn 93.902 82 3 2 2317 2397 461112291 461112371 5.640000e-24 122.0
36 TraesCS6D01G064900 chr4A 87.386 547 56 8 1 543 596220470 596221007 2.120000e-172 616.0
37 TraesCS6D01G064900 chr2B 85.185 513 62 10 40 543 108227332 108226825 7.970000e-142 514.0
38 TraesCS6D01G064900 chr2B 85.455 495 58 11 59 543 495924905 495925395 1.720000e-138 503.0
39 TraesCS6D01G064900 chr7A 85.039 508 58 10 45 543 91621015 91621513 6.200000e-138 501.0
40 TraesCS6D01G064900 chr3D 98.824 85 1 0 542 626 301971983 301971899 7.200000e-33 152.0
41 TraesCS6D01G064900 chr3D 87.826 115 9 4 530 643 112712771 112712661 3.370000e-26 130.0
42 TraesCS6D01G064900 chr2D 93.000 100 6 1 537 636 378043183 378043085 1.200000e-30 145.0
43 TraesCS6D01G064900 chr2D 94.624 93 4 1 538 630 30255361 30255270 4.330000e-30 143.0
44 TraesCS6D01G064900 chr2D 89.474 114 6 5 526 637 14895377 14895268 5.600000e-29 139.0
45 TraesCS6D01G064900 chr7D 92.784 97 7 0 535 631 177106951 177106855 1.560000e-29 141.0
46 TraesCS6D01G064900 chr7D 91.954 87 7 0 2308 2394 5068084 5068170 5.640000e-24 122.0
47 TraesCS6D01G064900 chr7D 93.827 81 5 0 2317 2397 510397835 510397755 5.640000e-24 122.0
48 TraesCS6D01G064900 chr1D 94.937 79 4 0 2317 2395 355081208 355081130 1.570000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G064900 chr6D 31478700 31482855 4155 False 7675.000000 7675 100.000000 1 4156 1 chr6D.!!$F1 4155
1 TraesCS6D01G064900 chr6A 31742095 31746557 4462 True 1002.333333 2204 94.831333 37 4156 6 chr6A.!!$R3 4119
2 TraesCS6D01G064900 chr6B 56313950 56317935 3985 True 708.875000 1400 95.194500 134 4094 8 chr6B.!!$R1 3960
3 TraesCS6D01G064900 chr5A 547612834 547614062 1228 False 963.000000 963 81.111000 979 2219 1 chr5A.!!$F1 1240
4 TraesCS6D01G064900 chr5B 526574704 526575929 1225 False 959.000000 959 81.156000 979 2219 1 chr5B.!!$F2 1240
5 TraesCS6D01G064900 chr5B 525452644 525453149 505 False 374.000000 374 80.312000 998 1501 1 chr5B.!!$F1 503
6 TraesCS6D01G064900 chr5D 432781795 432783194 1399 False 504.300000 917 80.735500 998 2501 2 chr5D.!!$F3 1503
7 TraesCS6D01G064900 chr5D 432933514 432934822 1308 False 403.000000 403 73.234000 981 2268 1 chr5D.!!$F1 1287
8 TraesCS6D01G064900 chr5D 433008084 433009293 1209 False 387.000000 387 73.525000 1026 2226 1 chr5D.!!$F2 1200
9 TraesCS6D01G064900 chrUn 63281652 63282944 1292 True 894.000000 894 79.535000 998 2311 1 chrUn.!!$R1 1313
10 TraesCS6D01G064900 chrUn 327297888 327299180 1292 True 894.000000 894 79.535000 998 2311 1 chrUn.!!$R2 1313
11 TraesCS6D01G064900 chr4A 596220470 596221007 537 False 616.000000 616 87.386000 1 543 1 chr4A.!!$F1 542
12 TraesCS6D01G064900 chr2B 108226825 108227332 507 True 514.000000 514 85.185000 40 543 1 chr2B.!!$R1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 688 0.174162 GCAAAGTGGGTCATCATGGC 59.826 55.000 0.0 0.0 0.00 4.40 F
936 1245 2.552315 GTTCGCAAGGGACAAAAGATCA 59.448 45.455 0.0 0.0 38.47 2.92 F
1505 1986 0.528684 GCCGACAAGATCCTCTTCCG 60.529 60.000 0.0 0.0 33.78 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 1986 0.105039 ATAGTACTCAGGCAAGCCGC 59.895 55.0 0.00 0.0 41.95 6.53 R
1881 2395 0.391661 CTGCGCCAACCATACAGAGT 60.392 55.0 4.18 0.0 0.00 3.24 R
3233 3858 0.469917 AGGACACAGACACAGGGTTG 59.530 55.0 0.00 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.701205 CCCCCTCCCAAAGAAAAATTG 57.299 47.619 0.00 0.00 0.00 2.32
51 52 2.305635 CCCCCTCCCAAAGAAAAATTGG 59.694 50.000 0.00 0.00 45.62 3.16
57 58 5.069781 CCTCCCAAAGAAAAATTGGTGTGTA 59.930 40.000 4.74 0.00 44.77 2.90
74 75 7.100409 TGGTGTGTATTAGATGAAACAATCGA 58.900 34.615 0.00 0.00 0.00 3.59
129 130 4.077108 AGCATGCTTCTCATTCTTGTCAA 58.923 39.130 16.30 0.00 31.79 3.18
391 401 3.096092 GCTACATTCCACCCCAATCAAA 58.904 45.455 0.00 0.00 0.00 2.69
394 404 5.362430 GCTACATTCCACCCCAATCAAATAA 59.638 40.000 0.00 0.00 0.00 1.40
546 557 5.855045 AGACCGGATCATGTAAATTACTCC 58.145 41.667 9.46 2.38 0.00 3.85
547 558 4.969484 ACCGGATCATGTAAATTACTCCC 58.031 43.478 9.46 0.00 0.00 4.30
548 559 4.658901 ACCGGATCATGTAAATTACTCCCT 59.341 41.667 9.46 0.00 0.00 4.20
549 560 5.221661 ACCGGATCATGTAAATTACTCCCTC 60.222 44.000 9.46 0.00 0.00 4.30
550 561 5.238583 CGGATCATGTAAATTACTCCCTCC 58.761 45.833 4.67 5.35 0.00 4.30
551 562 5.238583 GGATCATGTAAATTACTCCCTCCG 58.761 45.833 4.67 0.00 0.00 4.63
552 563 5.221661 GGATCATGTAAATTACTCCCTCCGT 60.222 44.000 4.67 0.00 0.00 4.69
553 564 5.272283 TCATGTAAATTACTCCCTCCGTC 57.728 43.478 4.67 0.00 0.00 4.79
554 565 4.100498 TCATGTAAATTACTCCCTCCGTCC 59.900 45.833 4.67 0.00 0.00 4.79
555 566 2.767960 TGTAAATTACTCCCTCCGTCCC 59.232 50.000 4.67 0.00 0.00 4.46
556 567 1.961133 AAATTACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
557 568 2.191981 AATTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
558 569 3.339713 AATTACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
559 570 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
560 571 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
561 572 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
562 573 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
563 574 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
564 575 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
565 576 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
566 577 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
567 578 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
568 579 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
569 580 4.712337 CCTCCGTCCCATAATATAAGAGCT 59.288 45.833 0.00 0.00 0.00 4.09
570 581 5.187967 CCTCCGTCCCATAATATAAGAGCTT 59.812 44.000 0.00 0.00 0.00 3.74
571 582 6.295916 CCTCCGTCCCATAATATAAGAGCTTT 60.296 42.308 0.00 0.00 0.00 3.51
572 583 7.074653 TCCGTCCCATAATATAAGAGCTTTT 57.925 36.000 0.00 0.00 0.00 2.27
573 584 7.514721 TCCGTCCCATAATATAAGAGCTTTTT 58.485 34.615 0.00 0.00 0.00 1.94
599 610 6.701432 ATACTACAGTAGTGTGAAAAACGC 57.299 37.500 21.71 0.00 39.81 4.84
601 612 4.743644 ACTACAGTAGTGTGAAAAACGCTC 59.256 41.667 12.75 0.00 46.98 5.03
602 613 3.793559 ACAGTAGTGTGAAAAACGCTCT 58.206 40.909 1.37 0.00 46.98 4.09
603 614 4.189231 ACAGTAGTGTGAAAAACGCTCTT 58.811 39.130 1.37 0.00 46.98 2.85
604 615 5.353938 ACAGTAGTGTGAAAAACGCTCTTA 58.646 37.500 1.37 0.00 46.98 2.10
605 616 5.989777 ACAGTAGTGTGAAAAACGCTCTTAT 59.010 36.000 1.37 0.00 46.98 1.73
606 617 7.149973 ACAGTAGTGTGAAAAACGCTCTTATA 58.850 34.615 1.37 0.00 46.98 0.98
607 618 7.817962 ACAGTAGTGTGAAAAACGCTCTTATAT 59.182 33.333 1.37 0.00 46.98 0.86
608 619 8.656849 CAGTAGTGTGAAAAACGCTCTTATATT 58.343 33.333 0.00 0.00 46.98 1.28
609 620 9.865321 AGTAGTGTGAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 46.98 0.98
612 623 8.612619 AGTGTGAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 46.98 2.74
613 624 7.855904 GTGTGAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 36.31 4.00
614 625 7.771361 TGTGAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
615 626 8.068380 GTGAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
616 627 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
617 628 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
618 629 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
619 630 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
620 631 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
621 632 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
622 633 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
623 634 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
624 635 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
625 636 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
626 637 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
627 638 2.376695 TATGGGACGGAGGGAGTAAG 57.623 55.000 0.00 0.00 0.00 2.34
628 639 0.635009 ATGGGACGGAGGGAGTAAGA 59.365 55.000 0.00 0.00 0.00 2.10
664 675 3.284449 GAACGGGTGCGGCAAAGT 61.284 61.111 3.23 1.98 0.00 2.66
677 688 0.174162 GCAAAGTGGGTCATCATGGC 59.826 55.000 0.00 0.00 0.00 4.40
720 732 7.410120 ACACTTTGAAATGAGAAGAAAACCT 57.590 32.000 0.00 0.00 0.00 3.50
904 1103 2.621055 TGTGGTATTTTGGTGTCTGCAC 59.379 45.455 0.00 0.00 44.53 4.57
936 1245 2.552315 GTTCGCAAGGGACAAAAGATCA 59.448 45.455 0.00 0.00 38.47 2.92
938 1247 2.552315 TCGCAAGGGACAAAAGATCAAC 59.448 45.455 0.00 0.00 38.47 3.18
939 1248 2.665519 CGCAAGGGACAAAAGATCAACG 60.666 50.000 0.00 0.00 0.00 4.10
1483 1954 2.770048 ATCTCTTCCCCCAGCCGG 60.770 66.667 0.00 0.00 0.00 6.13
1505 1986 0.528684 GCCGACAAGATCCTCTTCCG 60.529 60.000 0.00 0.00 33.78 4.30
1692 2176 2.125350 CTGCAGCCCGAGGAAGAC 60.125 66.667 0.00 0.00 0.00 3.01
1710 2200 2.368875 AGACGGTCAAAAGGTCATCACT 59.631 45.455 11.27 0.00 33.18 3.41
1984 2504 2.479566 TGAGAAGTGGATGCTGGAAC 57.520 50.000 0.00 0.00 0.00 3.62
2169 2730 3.844911 TGGTACATACACAAGCCCG 57.155 52.632 0.00 0.00 0.00 6.13
2312 2922 9.499479 CTTGAGAGCATTGGATTATTGTATACT 57.501 33.333 4.17 0.00 0.00 2.12
2318 2928 9.726438 AGCATTGGATTATTGTATACTAAGTCC 57.274 33.333 4.17 6.72 0.00 3.85
2319 2929 8.656849 GCATTGGATTATTGTATACTAAGTCCG 58.343 37.037 4.17 0.00 0.00 4.79
2320 2930 9.706691 CATTGGATTATTGTATACTAAGTCCGT 57.293 33.333 4.17 0.00 0.00 4.69
2321 2931 9.924650 ATTGGATTATTGTATACTAAGTCCGTC 57.075 33.333 4.17 0.00 0.00 4.79
2322 2932 7.889469 TGGATTATTGTATACTAAGTCCGTCC 58.111 38.462 4.17 0.69 0.00 4.79
2323 2933 7.039504 TGGATTATTGTATACTAAGTCCGTCCC 60.040 40.741 4.17 0.00 0.00 4.46
2324 2934 7.039504 GGATTATTGTATACTAAGTCCGTCCCA 60.040 40.741 4.17 0.00 0.00 4.37
2325 2935 7.844493 TTATTGTATACTAAGTCCGTCCCAT 57.156 36.000 4.17 0.00 0.00 4.00
2326 2936 8.938801 TTATTGTATACTAAGTCCGTCCCATA 57.061 34.615 4.17 0.00 0.00 2.74
2327 2937 7.844493 ATTGTATACTAAGTCCGTCCCATAA 57.156 36.000 4.17 0.00 0.00 1.90
2328 2938 7.844493 TTGTATACTAAGTCCGTCCCATAAT 57.156 36.000 4.17 0.00 0.00 1.28
2329 2939 8.938801 TTGTATACTAAGTCCGTCCCATAATA 57.061 34.615 4.17 0.00 0.00 0.98
2330 2940 9.537852 TTGTATACTAAGTCCGTCCCATAATAT 57.462 33.333 4.17 0.00 0.00 1.28
2334 2944 9.986157 ATACTAAGTCCGTCCCATAATATAAGA 57.014 33.333 0.00 0.00 0.00 2.10
2335 2945 8.350852 ACTAAGTCCGTCCCATAATATAAGAG 57.649 38.462 0.00 0.00 0.00 2.85
2336 2946 5.662674 AGTCCGTCCCATAATATAAGAGC 57.337 43.478 0.00 0.00 0.00 4.09
2337 2947 5.084519 AGTCCGTCCCATAATATAAGAGCA 58.915 41.667 0.00 0.00 0.00 4.26
2338 2948 5.721960 AGTCCGTCCCATAATATAAGAGCAT 59.278 40.000 0.00 0.00 0.00 3.79
2339 2949 6.213600 AGTCCGTCCCATAATATAAGAGCATT 59.786 38.462 0.00 0.00 0.00 3.56
2340 2950 6.879458 GTCCGTCCCATAATATAAGAGCATTT 59.121 38.462 0.00 0.00 0.00 2.32
2341 2951 7.390718 GTCCGTCCCATAATATAAGAGCATTTT 59.609 37.037 0.00 0.00 0.00 1.82
2342 2952 7.942341 TCCGTCCCATAATATAAGAGCATTTTT 59.058 33.333 0.00 0.00 0.00 1.94
2369 2979 6.979509 CAGTAGTATAGTGTCAAAAACGCTC 58.020 40.000 0.00 0.00 45.69 5.03
2370 2980 6.807230 CAGTAGTATAGTGTCAAAAACGCTCT 59.193 38.462 0.00 0.00 45.69 4.09
2371 2981 7.328737 CAGTAGTATAGTGTCAAAAACGCTCTT 59.671 37.037 0.00 0.00 45.69 2.85
2372 2982 8.517878 AGTAGTATAGTGTCAAAAACGCTCTTA 58.482 33.333 0.00 0.00 45.69 2.10
2373 2983 9.298774 GTAGTATAGTGTCAAAAACGCTCTTAT 57.701 33.333 0.00 0.00 45.69 1.73
2380 2990 9.378551 AGTGTCAAAAACGCTCTTATATTATGA 57.621 29.630 0.00 0.00 45.69 2.15
2381 2991 9.638300 GTGTCAAAAACGCTCTTATATTATGAG 57.362 33.333 0.00 0.00 35.42 2.90
2382 2992 9.594478 TGTCAAAAACGCTCTTATATTATGAGA 57.406 29.630 0.00 0.00 33.20 3.27
2385 2995 9.869844 CAAAAACGCTCTTATATTATGAGAAGG 57.130 33.333 0.47 0.00 33.20 3.46
2386 2996 9.832445 AAAAACGCTCTTATATTATGAGAAGGA 57.168 29.630 0.47 0.00 33.20 3.36
2387 2997 9.482627 AAAACGCTCTTATATTATGAGAAGGAG 57.517 33.333 0.47 0.00 33.20 3.69
2388 2998 7.164230 ACGCTCTTATATTATGAGAAGGAGG 57.836 40.000 0.47 0.00 33.20 4.30
2389 2999 6.153680 ACGCTCTTATATTATGAGAAGGAGGG 59.846 42.308 0.00 0.00 33.20 4.30
2390 3000 6.378564 CGCTCTTATATTATGAGAAGGAGGGA 59.621 42.308 0.00 0.00 33.20 4.20
2391 3001 7.416213 CGCTCTTATATTATGAGAAGGAGGGAG 60.416 44.444 0.00 0.00 33.20 4.30
2392 3002 7.398904 GCTCTTATATTATGAGAAGGAGGGAGT 59.601 40.741 0.47 0.00 33.20 3.85
2393 3003 9.983024 CTCTTATATTATGAGAAGGAGGGAGTA 57.017 37.037 0.47 0.00 33.20 2.59
2449 3059 4.730324 GCAATTTTGGTCCACAGTTTTTGC 60.730 41.667 0.00 0.00 0.00 3.68
2688 3313 7.069331 TGGGGATTATATTTGTAGCTTTTGTGG 59.931 37.037 0.00 0.00 0.00 4.17
2819 3444 3.749088 CACAATACTTTACTTGGGTCGCA 59.251 43.478 0.00 0.00 0.00 5.10
2835 3460 4.506802 GGGTCGCAGATAAAATCCCCTTAT 60.507 45.833 0.00 0.00 40.67 1.73
3054 3679 2.940514 TCAGGAGTTCAGGACCCATA 57.059 50.000 0.00 0.00 0.00 2.74
3136 3761 5.855395 GTGAAGATGAACAAAATGAGCTGAC 59.145 40.000 0.00 0.00 0.00 3.51
3230 3855 4.024387 TGTCCTGTATGTTTTTCGTTCTGC 60.024 41.667 0.00 0.00 0.00 4.26
3231 3856 3.500680 TCCTGTATGTTTTTCGTTCTGCC 59.499 43.478 0.00 0.00 0.00 4.85
3233 3858 2.554893 TGTATGTTTTTCGTTCTGCCCC 59.445 45.455 0.00 0.00 0.00 5.80
3236 3861 1.135333 TGTTTTTCGTTCTGCCCCAAC 59.865 47.619 0.00 0.00 0.00 3.77
3238 3863 1.110518 TTTTCGTTCTGCCCCAACCC 61.111 55.000 0.00 0.00 0.00 4.11
3305 3975 1.008538 GCAACCCTGCGTCACTTTG 60.009 57.895 0.00 0.00 39.20 2.77
3335 4010 5.831103 AGGTTCATGAGTATTTTGGGATGT 58.169 37.500 0.00 0.00 0.00 3.06
3522 4202 0.669077 ACGTCATGCTCCGTATCTCC 59.331 55.000 3.56 0.00 35.16 3.71
3524 4204 2.152016 CGTCATGCTCCGTATCTCCTA 58.848 52.381 0.00 0.00 0.00 2.94
3533 4213 2.953648 TCCGTATCTCCTATCGTTTGCA 59.046 45.455 0.00 0.00 0.00 4.08
3543 4223 4.511454 TCCTATCGTTTGCACAGATTATGC 59.489 41.667 3.51 0.00 43.68 3.14
3702 4387 7.822334 TCATTTTCACTACTTGTATGGGTACTG 59.178 37.037 0.00 0.00 0.00 2.74
3774 4462 9.906660 TGGTTGCTAAACTTGTCTATAATTTTG 57.093 29.630 0.00 0.00 36.48 2.44
3775 4463 9.908152 GGTTGCTAAACTTGTCTATAATTTTGT 57.092 29.630 0.00 0.00 36.48 2.83
3865 4553 4.273148 ACTTGAATCCTTTACTCACGCT 57.727 40.909 0.00 0.00 0.00 5.07
4026 4981 9.601217 ACATCATATCTGTAGTTTGGTTACTTC 57.399 33.333 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.189036 GGGGGCTAAGTGAAGAAACTATAT 57.811 41.667 0.00 0.00 0.00 0.86
30 31 2.305635 CCAATTTTTCTTTGGGAGGGGG 59.694 50.000 0.00 0.00 40.00 5.40
31 32 2.978978 ACCAATTTTTCTTTGGGAGGGG 59.021 45.455 7.32 0.00 46.49 4.79
32 33 3.390967 ACACCAATTTTTCTTTGGGAGGG 59.609 43.478 7.32 0.00 46.49 4.30
33 34 4.141733 ACACACCAATTTTTCTTTGGGAGG 60.142 41.667 7.32 0.00 46.49 4.30
34 35 5.022282 ACACACCAATTTTTCTTTGGGAG 57.978 39.130 7.32 2.40 46.49 4.30
35 36 6.739331 ATACACACCAATTTTTCTTTGGGA 57.261 33.333 7.32 0.00 46.49 4.37
36 37 8.364142 TCTAATACACACCAATTTTTCTTTGGG 58.636 33.333 7.32 0.00 46.49 4.12
50 51 7.534085 TCGATTGTTTCATCTAATACACACC 57.466 36.000 0.00 0.00 0.00 4.16
67 68 6.818142 TGACACACATTCTTCATATCGATTGT 59.182 34.615 1.71 0.00 0.00 2.71
72 73 5.438117 GCATGACACACATTCTTCATATCG 58.562 41.667 0.00 0.00 37.07 2.92
74 75 4.581824 GGGCATGACACACATTCTTCATAT 59.418 41.667 0.00 0.00 37.07 1.78
129 130 3.345508 AGCCATGCATGATCATCGTAT 57.654 42.857 28.31 4.27 0.00 3.06
266 274 3.568007 GTGGCAAAGAGTTGTATGACCAA 59.432 43.478 0.00 0.00 37.06 3.67
391 401 9.699410 TCCCAAGACAATTTCAGATAACATTAT 57.301 29.630 0.00 0.00 0.00 1.28
394 404 6.096001 GCTCCCAAGACAATTTCAGATAACAT 59.904 38.462 0.00 0.00 0.00 2.71
471 481 3.812611 TGCATGAACTGGCCCATATAT 57.187 42.857 0.00 0.00 0.00 0.86
479 489 4.568956 AGGTTAATTTTGCATGAACTGGC 58.431 39.130 0.00 0.00 0.00 4.85
543 554 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
544 555 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
545 556 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
546 557 4.712337 AGCTCTTATATTATGGGACGGAGG 59.288 45.833 0.00 0.00 0.00 4.30
547 558 5.923733 AGCTCTTATATTATGGGACGGAG 57.076 43.478 0.00 0.00 0.00 4.63
548 559 6.681729 AAAGCTCTTATATTATGGGACGGA 57.318 37.500 0.00 0.00 0.00 4.69
549 560 7.745620 AAAAAGCTCTTATATTATGGGACGG 57.254 36.000 0.00 0.00 0.00 4.79
573 584 8.702438 GCGTTTTTCACACTACTGTAGTATAAA 58.298 33.333 19.32 15.66 37.23 1.40
574 585 8.084073 AGCGTTTTTCACACTACTGTAGTATAA 58.916 33.333 19.32 11.27 37.23 0.98
575 586 7.596494 AGCGTTTTTCACACTACTGTAGTATA 58.404 34.615 19.32 6.14 37.23 1.47
576 587 6.453092 AGCGTTTTTCACACTACTGTAGTAT 58.547 36.000 19.32 6.54 37.23 2.12
577 588 5.835257 AGCGTTTTTCACACTACTGTAGTA 58.165 37.500 19.32 2.60 37.23 1.82
578 589 4.690122 AGCGTTTTTCACACTACTGTAGT 58.310 39.130 14.53 14.53 40.28 2.73
579 590 4.982916 AGAGCGTTTTTCACACTACTGTAG 59.017 41.667 13.13 13.13 0.00 2.74
580 591 4.940463 AGAGCGTTTTTCACACTACTGTA 58.060 39.130 0.00 0.00 0.00 2.74
581 592 3.793559 AGAGCGTTTTTCACACTACTGT 58.206 40.909 0.00 0.00 0.00 3.55
582 593 4.795970 AAGAGCGTTTTTCACACTACTG 57.204 40.909 0.00 0.00 0.00 2.74
583 594 8.773404 AATATAAGAGCGTTTTTCACACTACT 57.227 30.769 0.00 0.00 0.00 2.57
586 597 8.612619 CCATAATATAAGAGCGTTTTTCACACT 58.387 33.333 0.00 0.00 0.00 3.55
587 598 7.855904 CCCATAATATAAGAGCGTTTTTCACAC 59.144 37.037 0.00 0.00 0.00 3.82
588 599 7.771361 TCCCATAATATAAGAGCGTTTTTCACA 59.229 33.333 0.00 0.00 0.00 3.58
589 600 8.068380 GTCCCATAATATAAGAGCGTTTTTCAC 58.932 37.037 0.00 0.00 0.00 3.18
590 601 7.042321 CGTCCCATAATATAAGAGCGTTTTTCA 60.042 37.037 0.00 0.00 0.00 2.69
591 602 7.288672 CGTCCCATAATATAAGAGCGTTTTTC 58.711 38.462 0.00 0.00 0.00 2.29
592 603 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
593 604 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
594 605 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
595 606 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
596 607 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
597 608 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
598 609 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
599 610 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
600 611 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
601 612 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
602 613 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
603 614 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
604 615 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
605 616 4.106825 TCTTACTCCCTCCGTCCCATAATA 59.893 45.833 0.00 0.00 0.00 0.98
606 617 3.116862 TCTTACTCCCTCCGTCCCATAAT 60.117 47.826 0.00 0.00 0.00 1.28
607 618 2.245546 TCTTACTCCCTCCGTCCCATAA 59.754 50.000 0.00 0.00 0.00 1.90
608 619 1.854939 TCTTACTCCCTCCGTCCCATA 59.145 52.381 0.00 0.00 0.00 2.74
609 620 0.635009 TCTTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
610 621 0.635009 ATCTTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
611 622 2.158490 ACTATCTTACTCCCTCCGTCCC 60.158 54.545 0.00 0.00 0.00 4.46
612 623 3.226682 ACTATCTTACTCCCTCCGTCC 57.773 52.381 0.00 0.00 0.00 4.79
613 624 4.463070 AGAACTATCTTACTCCCTCCGTC 58.537 47.826 0.00 0.00 29.15 4.79
614 625 4.523168 AGAACTATCTTACTCCCTCCGT 57.477 45.455 0.00 0.00 29.15 4.69
615 626 6.149807 GTGATAGAACTATCTTACTCCCTCCG 59.850 46.154 18.55 0.00 41.80 4.63
616 627 7.175990 CAGTGATAGAACTATCTTACTCCCTCC 59.824 44.444 18.55 0.00 41.80 4.30
617 628 7.940137 TCAGTGATAGAACTATCTTACTCCCTC 59.060 40.741 18.55 0.00 41.80 4.30
618 629 7.817440 TCAGTGATAGAACTATCTTACTCCCT 58.183 38.462 18.55 5.07 41.80 4.20
619 630 8.466617 TTCAGTGATAGAACTATCTTACTCCC 57.533 38.462 18.55 3.48 41.80 4.30
625 636 9.307121 CGTTCATTTCAGTGATAGAACTATCTT 57.693 33.333 20.86 7.94 41.80 2.40
626 637 7.923344 CCGTTCATTTCAGTGATAGAACTATCT 59.077 37.037 20.86 1.85 41.80 1.98
627 638 7.169982 CCCGTTCATTTCAGTGATAGAACTATC 59.830 40.741 20.86 13.08 41.67 2.08
628 639 6.986817 CCCGTTCATTTCAGTGATAGAACTAT 59.013 38.462 20.86 0.00 34.71 2.12
664 675 0.839277 CACTAGGCCATGATGACCCA 59.161 55.000 5.01 0.00 0.00 4.51
717 729 7.013942 GTCTTGTTTCAAAGGGTTACATTAGGT 59.986 37.037 0.00 0.00 0.00 3.08
720 732 7.883391 TGTCTTGTTTCAAAGGGTTACATTA 57.117 32.000 0.00 0.00 0.00 1.90
758 770 5.935206 TGGTTGCTTTGAGATTCGTGTTATA 59.065 36.000 0.00 0.00 0.00 0.98
836 1003 1.902508 CTTCCACTTCTACCCAGCTCA 59.097 52.381 0.00 0.00 0.00 4.26
878 1077 5.177327 GCAGACACCAAAATACCACAAAATG 59.823 40.000 0.00 0.00 0.00 2.32
959 1268 3.131478 GGAAATGGCGACGGGTGG 61.131 66.667 0.00 0.00 0.00 4.61
1094 1409 0.105778 CGGAAGCAGGAGGAAGATCC 59.894 60.000 0.00 0.00 39.89 3.36
1483 1954 2.586357 GAGGATCTTGTCGGCGGC 60.586 66.667 3.62 3.62 0.00 6.53
1505 1986 0.105039 ATAGTACTCAGGCAAGCCGC 59.895 55.000 0.00 0.00 41.95 6.53
1606 2087 1.828660 CCGGGGAGTAGACAGCGAT 60.829 63.158 0.00 0.00 0.00 4.58
1692 2176 4.568152 AAAAGTGATGACCTTTTGACCG 57.432 40.909 0.00 0.00 39.86 4.79
1881 2395 0.391661 CTGCGCCAACCATACAGAGT 60.392 55.000 4.18 0.00 0.00 3.24
2169 2730 2.611473 CGCCATGATGTAGGGATGAGAC 60.611 54.545 0.00 0.00 29.57 3.36
2231 2792 5.407387 TGAAGAAACTTTACCGGAATCTTCG 59.593 40.000 9.46 0.00 42.48 3.79
2311 2921 7.093902 TGCTCTTATATTATGGGACGGACTTAG 60.094 40.741 0.00 0.00 0.00 2.18
2312 2922 6.722590 TGCTCTTATATTATGGGACGGACTTA 59.277 38.462 0.00 0.00 0.00 2.24
2313 2923 5.542635 TGCTCTTATATTATGGGACGGACTT 59.457 40.000 0.00 0.00 0.00 3.01
2314 2924 5.084519 TGCTCTTATATTATGGGACGGACT 58.915 41.667 0.00 0.00 0.00 3.85
2315 2925 5.401531 TGCTCTTATATTATGGGACGGAC 57.598 43.478 0.00 0.00 0.00 4.79
2316 2926 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
2317 2927 7.687941 AAAATGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
2341 2951 8.702438 GCGTTTTTGACACTATACTACTGTAAA 58.298 33.333 0.00 0.00 31.80 2.01
2342 2952 8.084073 AGCGTTTTTGACACTATACTACTGTAA 58.916 33.333 0.00 0.00 31.80 2.41
2343 2953 7.596494 AGCGTTTTTGACACTATACTACTGTA 58.404 34.615 0.00 0.00 0.00 2.74
2344 2954 6.453092 AGCGTTTTTGACACTATACTACTGT 58.547 36.000 0.00 0.00 0.00 3.55
2345 2955 6.807230 AGAGCGTTTTTGACACTATACTACTG 59.193 38.462 0.00 0.00 0.00 2.74
2346 2956 6.921914 AGAGCGTTTTTGACACTATACTACT 58.078 36.000 0.00 0.00 0.00 2.57
2347 2957 7.578169 AAGAGCGTTTTTGACACTATACTAC 57.422 36.000 0.00 0.00 0.00 2.73
2354 2964 9.378551 TCATAATATAAGAGCGTTTTTGACACT 57.621 29.630 0.00 0.00 0.00 3.55
2355 2965 9.638300 CTCATAATATAAGAGCGTTTTTGACAC 57.362 33.333 0.00 0.00 0.00 3.67
2356 2966 9.594478 TCTCATAATATAAGAGCGTTTTTGACA 57.406 29.630 0.00 0.00 0.00 3.58
2359 2969 9.869844 CCTTCTCATAATATAAGAGCGTTTTTG 57.130 33.333 0.00 0.00 0.00 2.44
2360 2970 9.832445 TCCTTCTCATAATATAAGAGCGTTTTT 57.168 29.630 0.00 0.00 0.00 1.94
2361 2971 9.482627 CTCCTTCTCATAATATAAGAGCGTTTT 57.517 33.333 0.00 0.00 0.00 2.43
2362 2972 8.091449 CCTCCTTCTCATAATATAAGAGCGTTT 58.909 37.037 0.00 0.00 0.00 3.60
2363 2973 7.310113 CCCTCCTTCTCATAATATAAGAGCGTT 60.310 40.741 0.00 0.00 0.00 4.84
2364 2974 6.153680 CCCTCCTTCTCATAATATAAGAGCGT 59.846 42.308 0.00 0.00 0.00 5.07
2365 2975 6.378564 TCCCTCCTTCTCATAATATAAGAGCG 59.621 42.308 0.00 0.00 0.00 5.03
2366 2976 7.398904 ACTCCCTCCTTCTCATAATATAAGAGC 59.601 40.741 0.00 0.00 0.00 4.09
2367 2977 8.893563 ACTCCCTCCTTCTCATAATATAAGAG 57.106 38.462 0.00 0.00 0.00 2.85
2368 2978 9.983024 CTACTCCCTCCTTCTCATAATATAAGA 57.017 37.037 0.00 0.00 0.00 2.10
2369 2979 9.762381 ACTACTCCCTCCTTCTCATAATATAAG 57.238 37.037 0.00 0.00 0.00 1.73
2371 2981 9.535170 CAACTACTCCCTCCTTCTCATAATATA 57.465 37.037 0.00 0.00 0.00 0.86
2372 2982 8.013667 ACAACTACTCCCTCCTTCTCATAATAT 58.986 37.037 0.00 0.00 0.00 1.28
2373 2983 7.287927 CACAACTACTCCCTCCTTCTCATAATA 59.712 40.741 0.00 0.00 0.00 0.98
2374 2984 6.098982 CACAACTACTCCCTCCTTCTCATAAT 59.901 42.308 0.00 0.00 0.00 1.28
2375 2985 5.422331 CACAACTACTCCCTCCTTCTCATAA 59.578 44.000 0.00 0.00 0.00 1.90
2376 2986 4.956700 CACAACTACTCCCTCCTTCTCATA 59.043 45.833 0.00 0.00 0.00 2.15
2377 2987 3.772025 CACAACTACTCCCTCCTTCTCAT 59.228 47.826 0.00 0.00 0.00 2.90
2378 2988 3.165875 CACAACTACTCCCTCCTTCTCA 58.834 50.000 0.00 0.00 0.00 3.27
2379 2989 3.432378 TCACAACTACTCCCTCCTTCTC 58.568 50.000 0.00 0.00 0.00 2.87
2380 2990 3.544698 TCACAACTACTCCCTCCTTCT 57.455 47.619 0.00 0.00 0.00 2.85
2381 2991 5.934402 TTATCACAACTACTCCCTCCTTC 57.066 43.478 0.00 0.00 0.00 3.46
2382 2992 6.098982 CAGATTATCACAACTACTCCCTCCTT 59.901 42.308 0.00 0.00 0.00 3.36
2383 2993 5.600484 CAGATTATCACAACTACTCCCTCCT 59.400 44.000 0.00 0.00 0.00 3.69
2384 2994 5.740513 GCAGATTATCACAACTACTCCCTCC 60.741 48.000 0.00 0.00 0.00 4.30
2385 2995 5.293560 GCAGATTATCACAACTACTCCCTC 58.706 45.833 0.00 0.00 0.00 4.30
2386 2996 4.101741 GGCAGATTATCACAACTACTCCCT 59.898 45.833 0.00 0.00 0.00 4.20
2387 2997 4.141711 TGGCAGATTATCACAACTACTCCC 60.142 45.833 0.00 0.00 0.00 4.30
2388 2998 5.023533 TGGCAGATTATCACAACTACTCC 57.976 43.478 0.00 0.00 0.00 3.85
2389 2999 8.662781 TTAATGGCAGATTATCACAACTACTC 57.337 34.615 0.00 0.00 0.00 2.59
2390 3000 9.632638 AATTAATGGCAGATTATCACAACTACT 57.367 29.630 0.00 0.00 0.00 2.57
2391 3001 9.884465 GAATTAATGGCAGATTATCACAACTAC 57.116 33.333 0.00 0.00 0.00 2.73
2392 3002 9.066892 GGAATTAATGGCAGATTATCACAACTA 57.933 33.333 0.00 0.00 0.00 2.24
2393 3003 7.560991 TGGAATTAATGGCAGATTATCACAACT 59.439 33.333 0.00 0.00 0.00 3.16
2688 3313 6.696411 AGATGATGAATAGATTCGTTCTCCC 58.304 40.000 0.00 0.00 39.62 4.30
2786 3411 8.935844 CAAGTAAAGTATTGTGTGAAGCATCTA 58.064 33.333 0.00 0.00 0.00 1.98
2835 3460 6.543430 AGGCAGCAATTGTAAATTAATCCA 57.457 33.333 7.40 0.00 0.00 3.41
3054 3679 3.044305 GGACGCACGAGCAGCTTT 61.044 61.111 5.50 0.00 42.27 3.51
3136 3761 2.148916 TTACTGCCGCTCAATATCCG 57.851 50.000 0.00 0.00 0.00 4.18
3230 3855 1.228245 CACAGACACAGGGTTGGGG 60.228 63.158 0.00 0.00 29.54 4.96
3231 3856 0.535102 GACACAGACACAGGGTTGGG 60.535 60.000 0.00 0.00 0.00 4.12
3233 3858 0.469917 AGGACACAGACACAGGGTTG 59.530 55.000 0.00 0.00 0.00 3.77
3236 3861 1.121407 TCCAGGACACAGACACAGGG 61.121 60.000 0.00 0.00 0.00 4.45
3238 3863 2.420642 CAATCCAGGACACAGACACAG 58.579 52.381 0.00 0.00 0.00 3.66
3305 3975 3.914426 ATACTCATGAACCTCACACCC 57.086 47.619 0.00 0.00 0.00 4.61
3515 4195 4.933330 TCTGTGCAAACGATAGGAGATAC 58.067 43.478 0.00 0.00 43.77 2.24
3522 4202 4.209080 TCGCATAATCTGTGCAAACGATAG 59.791 41.667 0.00 0.00 42.62 2.08
3524 4204 2.935849 TCGCATAATCTGTGCAAACGAT 59.064 40.909 0.00 0.00 42.62 3.73
3533 4213 4.281941 TCCTTGAGCTATCGCATAATCTGT 59.718 41.667 0.00 0.00 39.10 3.41
3543 4223 6.309980 CAGCACTTTATATCCTTGAGCTATCG 59.690 42.308 0.00 0.00 0.00 2.92
3550 4230 5.221106 GCAATGCAGCACTTTATATCCTTGA 60.221 40.000 0.00 0.00 0.00 3.02
3723 4408 4.695455 ACAAGCAGTGCAAACGATATAAGT 59.305 37.500 19.20 0.00 0.00 2.24
3847 4535 3.953712 TCAGCGTGAGTAAAGGATTCA 57.046 42.857 0.00 0.00 0.00 2.57
3865 4553 8.677300 GGCACAAAGACATAGAAGAATATTTCA 58.323 33.333 0.00 0.00 0.00 2.69
4026 4981 6.586344 TCAGGTTCAGAGGCTAGATAAATTG 58.414 40.000 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.