Multiple sequence alignment - TraesCS6D01G064700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G064700 chr6D 100.000 5656 0 0 1 5656 31271781 31266126 0.000000e+00 10445.0
1 TraesCS6D01G064700 chr6D 89.184 2709 200 34 1960 4623 30097791 30095131 0.000000e+00 3293.0
2 TraesCS6D01G064700 chr6D 93.201 1456 67 20 1854 3303 31471720 31473149 0.000000e+00 2111.0
3 TraesCS6D01G064700 chr6D 82.540 2291 298 57 2417 4670 29925582 29927807 0.000000e+00 1921.0
4 TraesCS6D01G064700 chr6D 82.330 2292 313 61 2367 4620 29851360 29853597 0.000000e+00 1905.0
5 TraesCS6D01G064700 chr6D 92.032 1255 71 15 3383 4614 31473234 31474482 0.000000e+00 1736.0
6 TraesCS6D01G064700 chr6D 86.961 974 61 20 903 1857 31470651 31471577 0.000000e+00 1035.0
7 TraesCS6D01G064700 chr6D 91.176 748 39 9 1084 1813 30098811 30098073 0.000000e+00 990.0
8 TraesCS6D01G064700 chr6D 89.141 396 18 5 135 506 29848972 29849366 2.390000e-128 470.0
9 TraesCS6D01G064700 chr6D 91.185 329 17 1 4531 4859 31474354 31474670 2.420000e-118 436.0
10 TraesCS6D01G064700 chr6D 85.446 426 31 8 112 506 31469676 31470101 1.130000e-111 414.0
11 TraesCS6D01G064700 chr6D 81.280 422 30 20 132 514 29922322 29922733 4.280000e-76 296.0
12 TraesCS6D01G064700 chr6D 79.733 449 52 14 136 553 30099823 30099383 7.170000e-74 289.0
13 TraesCS6D01G064700 chr6D 86.747 166 14 4 4774 4935 30095058 30094897 1.620000e-40 178.0
14 TraesCS6D01G064700 chr6D 82.941 170 29 0 4559 4728 29853491 29853660 2.730000e-33 154.0
15 TraesCS6D01G064700 chr6D 91.176 102 9 0 5132 5233 31474867 31474766 7.640000e-29 139.0
16 TraesCS6D01G064700 chr6D 92.771 83 2 1 4936 5014 30094853 30094771 3.580000e-22 117.0
17 TraesCS6D01G064700 chr6D 91.358 81 6 1 4950 5030 29854067 29854146 5.990000e-20 110.0
18 TraesCS6D01G064700 chr6D 90.698 86 3 1 5141 5221 30094479 30094564 5.990000e-20 110.0
19 TraesCS6D01G064700 chr6B 89.143 2671 206 39 1960 4585 57417260 57419891 0.000000e+00 3249.0
20 TraesCS6D01G064700 chr6B 86.373 2928 300 56 1858 4733 79877359 79880239 0.000000e+00 3105.0
21 TraesCS6D01G064700 chr6B 93.266 1485 71 17 3383 4859 56377830 56376367 0.000000e+00 2161.0
22 TraesCS6D01G064700 chr6B 94.223 1281 55 14 3295 4567 56396144 56394875 0.000000e+00 1938.0
23 TraesCS6D01G064700 chr6B 84.000 2025 256 37 2677 4670 57733446 57731459 0.000000e+00 1882.0
24 TraesCS6D01G064700 chr6B 90.192 1458 95 23 1858 3305 56397583 56396164 0.000000e+00 1857.0
25 TraesCS6D01G064700 chr6B 90.638 940 42 18 894 1813 57416086 57416999 0.000000e+00 1206.0
26 TraesCS6D01G064700 chr6B 93.073 794 28 17 1854 2644 56379434 56378665 0.000000e+00 1136.0
27 TraesCS6D01G064700 chr6B 91.486 693 40 7 106 791 56399507 56398827 0.000000e+00 935.0
28 TraesCS6D01G064700 chr6B 87.875 734 47 11 1139 1857 56380283 56379577 0.000000e+00 824.0
29 TraesCS6D01G064700 chr6B 82.594 879 80 31 898 1729 79876161 79877013 0.000000e+00 708.0
30 TraesCS6D01G064700 chr6B 87.583 604 37 16 1263 1855 56398309 56397733 0.000000e+00 665.0
31 TraesCS6D01G064700 chr6B 96.154 338 11 1 5321 5656 56393678 56393341 8.280000e-153 551.0
32 TraesCS6D01G064700 chr6B 85.268 448 33 6 134 553 57415227 57415669 1.130000e-116 431.0
33 TraesCS6D01G064700 chr6B 85.185 405 12 14 774 1147 56398727 56398340 6.920000e-99 372.0
34 TraesCS6D01G064700 chr6B 83.645 428 24 17 112 505 56381594 56381179 1.500000e-95 361.0
35 TraesCS6D01G064700 chr6B 80.706 425 76 4 5235 5656 57453127 57453548 5.460000e-85 326.0
36 TraesCS6D01G064700 chr6B 85.135 296 29 9 4645 4935 57419890 57420175 7.170000e-74 289.0
37 TraesCS6D01G064700 chr6B 80.896 424 32 16 139 517 57737010 57736591 7.170000e-74 289.0
38 TraesCS6D01G064700 chr6B 97.895 95 2 0 4936 5030 79880640 79880734 1.260000e-36 165.0
39 TraesCS6D01G064700 chr6B 94.505 91 5 0 5141 5231 56376171 56376261 2.120000e-29 141.0
40 TraesCS6D01G064700 chr6B 91.566 83 2 2 4936 5014 57420213 57420294 5.990000e-20 110.0
41 TraesCS6D01G064700 chr6B 91.667 72 6 0 1742 1813 79877074 79877145 3.610000e-17 100.0
42 TraesCS6D01G064700 chr6B 87.342 79 4 3 382 454 50410901 50410823 1.010000e-12 86.1
43 TraesCS6D01G064700 chr6B 97.297 37 1 0 1821 1857 79877174 79877210 4.730000e-06 63.9
44 TraesCS6D01G064700 chr6A 88.955 2671 216 38 1960 4586 32741303 32743938 0.000000e+00 3225.0
45 TraesCS6D01G064700 chr6A 86.761 2825 270 56 1858 4633 46699386 46696617 0.000000e+00 3049.0
46 TraesCS6D01G064700 chr6A 93.607 1486 67 12 3383 4859 31751847 31750381 0.000000e+00 2193.0
47 TraesCS6D01G064700 chr6A 92.867 1458 71 20 1854 3303 31753364 31751932 0.000000e+00 2085.0
48 TraesCS6D01G064700 chr6A 83.515 2293 287 59 2417 4670 32812174 32809934 0.000000e+00 2056.0
49 TraesCS6D01G064700 chr6A 89.328 937 57 19 894 1813 32740137 32741047 0.000000e+00 1136.0
50 TraesCS6D01G064700 chr6A 81.566 792 65 27 811 1566 31754483 31753737 3.800000e-161 579.0
51 TraesCS6D01G064700 chr6A 88.018 434 36 7 1858 2278 45353838 45354268 3.040000e-137 499.0
52 TraesCS6D01G064700 chr6A 85.880 432 40 6 141 553 32739288 32739717 1.870000e-119 440.0
53 TraesCS6D01G064700 chr6A 94.245 278 15 1 5234 5510 32326497 32326774 1.880000e-114 424.0
54 TraesCS6D01G064700 chr6A 85.096 416 20 8 133 506 32887970 32887555 2.470000e-103 387.0
55 TraesCS6D01G064700 chr6A 83.933 417 44 9 106 506 31755318 31754909 1.490000e-100 377.0
56 TraesCS6D01G064700 chr6A 89.680 281 22 4 106 380 31756783 31756504 9.020000e-93 351.0
57 TraesCS6D01G064700 chr6A 82.025 395 33 18 146 506 32814336 32813946 9.210000e-78 302.0
58 TraesCS6D01G064700 chr6A 90.308 227 14 1 1639 1857 31753733 31753507 1.990000e-74 291.0
59 TraesCS6D01G064700 chr6A 95.570 158 7 0 5499 5656 32328133 32328290 2.620000e-63 254.0
60 TraesCS6D01G064700 chr6A 97.895 95 2 0 4936 5030 46696064 46695970 1.260000e-36 165.0
61 TraesCS6D01G064700 chr6A 83.333 174 27 1 4562 4733 32883458 32883285 5.870000e-35 159.0
62 TraesCS6D01G064700 chr6A 92.771 83 2 1 4936 5014 32744232 32744314 3.580000e-22 117.0
63 TraesCS6D01G064700 chr6A 92.593 81 5 1 4950 5030 32882880 32882801 1.290000e-21 115.0
64 TraesCS6D01G064700 chr6A 93.056 72 5 0 1742 1813 46699667 46699596 7.750000e-19 106.0
65 TraesCS6D01G064700 chr6A 89.535 86 4 1 5141 5221 32744606 32744521 2.790000e-18 104.0
66 TraesCS6D01G064700 chr6A 86.517 89 8 2 4845 4930 45356714 45356801 1.680000e-15 95.3
67 TraesCS6D01G064700 chr6A 95.918 49 2 0 382 430 45352854 45352902 4.700000e-11 80.5
68 TraesCS6D01G064700 chr6A 100.000 36 0 0 1820 1855 46699569 46699534 3.660000e-07 67.6
69 TraesCS6D01G064700 chrUn 86.962 2930 281 52 1858 4733 27473034 27475916 0.000000e+00 3201.0
70 TraesCS6D01G064700 chrUn 83.239 883 78 29 898 1729 27471829 27472692 0.000000e+00 747.0
71 TraesCS6D01G064700 chrUn 87.586 435 37 7 1858 2278 137913821 137913390 6.590000e-134 488.0
72 TraesCS6D01G064700 chrUn 86.177 463 43 12 894 1346 68355836 68356287 1.100000e-131 481.0
73 TraesCS6D01G064700 chrUn 85.120 457 42 17 894 1346 268239364 268239798 1.450000e-120 444.0
74 TraesCS6D01G064700 chrUn 85.120 457 42 17 894 1346 312454547 312454113 1.450000e-120 444.0
75 TraesCS6D01G064700 chrUn 98.889 90 1 0 4936 5025 27476330 27476419 1.630000e-35 161.0
76 TraesCS6D01G064700 chrUn 79.518 249 32 9 4562 4810 137911205 137910976 5.870000e-35 159.0
77 TraesCS6D01G064700 chrUn 93.056 72 5 0 1742 1813 27472753 27472824 7.750000e-19 106.0
78 TraesCS6D01G064700 chrUn 83.495 103 13 2 4845 4944 137910974 137910873 6.030000e-15 93.5
79 TraesCS6D01G064700 chrUn 90.476 42 2 2 713 753 55912026 55911986 3.000000e-03 54.7
80 TraesCS6D01G064700 chr2D 81.568 2436 321 73 2357 4733 48565433 48567799 0.000000e+00 1893.0
81 TraesCS6D01G064700 chr2D 85.699 944 61 21 932 1828 48563001 48563917 0.000000e+00 928.0
82 TraesCS6D01G064700 chr2D 87.591 137 5 1 382 506 48562517 48562653 1.270000e-31 148.0
83 TraesCS6D01G064700 chr2D 89.157 83 5 1 4947 5025 48568202 48568284 3.610000e-17 100.0
84 TraesCS6D01G064700 chr2D 100.000 28 0 0 714 741 615400829 615400856 1.000000e-02 52.8
85 TraesCS6D01G064700 chr5A 85.065 462 51 9 894 1346 655640386 655640838 6.680000e-124 455.0
86 TraesCS6D01G064700 chr5A 84.807 441 40 12 919 1347 655642348 655642773 8.760000e-113 418.0
87 TraesCS6D01G064700 chr5A 89.811 265 22 3 1086 1346 655640962 655641225 9.080000e-88 335.0
88 TraesCS6D01G064700 chr5B 84.430 456 43 16 894 1347 664802019 664802448 1.880000e-114 424.0
89 TraesCS6D01G064700 chr5B 84.279 458 45 15 892 1347 664893135 664893567 6.780000e-114 422.0
90 TraesCS6D01G064700 chr5B 100.000 28 0 0 714 741 398060135 398060162 1.000000e-02 52.8
91 TraesCS6D01G064700 chr2B 84.977 426 35 12 1083 1491 13182956 13183369 6.820000e-109 405.0
92 TraesCS6D01G064700 chr3B 93.939 66 4 0 1 66 771981221 771981286 3.610000e-17 100.0
93 TraesCS6D01G064700 chr3B 96.154 52 2 0 1 52 771978223 771978274 1.010000e-12 86.1
94 TraesCS6D01G064700 chr3B 100.000 28 0 0 714 741 257086488 257086515 1.000000e-02 52.8
95 TraesCS6D01G064700 chr7D 77.714 175 25 7 1518 1682 529351904 529351734 1.680000e-15 95.3
96 TraesCS6D01G064700 chr2A 88.406 69 6 1 1 67 423035652 423035584 1.310000e-11 82.4
97 TraesCS6D01G064700 chr2A 90.909 55 5 0 1 55 528830292 528830346 2.190000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G064700 chr6D 31266126 31271781 5655 True 10445.000000 10445 100.000000 1 5656 1 chr6D.!!$R1 5655
1 TraesCS6D01G064700 chr6D 31469676 31474670 4994 False 1146.400000 2111 89.765000 112 4859 5 chr6D.!!$F4 4747
2 TraesCS6D01G064700 chr6D 29922322 29927807 5485 False 1108.500000 1921 81.910000 132 4670 2 chr6D.!!$F3 4538
3 TraesCS6D01G064700 chr6D 30094771 30099823 5052 True 973.400000 3293 87.922200 136 5014 5 chr6D.!!$R3 4878
4 TraesCS6D01G064700 chr6D 29848972 29854146 5174 False 659.750000 1905 86.442500 135 5030 4 chr6D.!!$F2 4895
5 TraesCS6D01G064700 chr6B 56376367 56381594 5227 True 1120.500000 2161 89.464750 112 4859 4 chr6B.!!$R2 4747
6 TraesCS6D01G064700 chr6B 57731459 57737010 5551 True 1085.500000 1882 82.448000 139 4670 2 chr6B.!!$R4 4531
7 TraesCS6D01G064700 chr6B 57415227 57420294 5067 False 1057.000000 3249 88.350000 134 5014 5 chr6B.!!$F3 4880
8 TraesCS6D01G064700 chr6B 56393341 56399507 6166 True 1053.000000 1938 90.803833 106 5656 6 chr6B.!!$R3 5550
9 TraesCS6D01G064700 chr6B 79876161 79880734 4573 False 828.380000 3105 91.165200 898 5030 5 chr6B.!!$F4 4132
10 TraesCS6D01G064700 chr6A 32739288 32744314 5026 False 1229.500000 3225 89.233500 141 5014 4 chr6A.!!$F2 4873
11 TraesCS6D01G064700 chr6A 32809934 32814336 4402 True 1179.000000 2056 82.770000 146 4670 2 chr6A.!!$R4 4524
12 TraesCS6D01G064700 chr6A 31750381 31756783 6402 True 979.333333 2193 88.660167 106 4859 6 chr6A.!!$R3 4753
13 TraesCS6D01G064700 chr6A 46695970 46699667 3697 True 846.900000 3049 94.428000 1742 5030 4 chr6A.!!$R6 3288
14 TraesCS6D01G064700 chr6A 32326497 32328290 1793 False 339.000000 424 94.907500 5234 5656 2 chr6A.!!$F1 422
15 TraesCS6D01G064700 chr6A 45352854 45356801 3947 False 224.933333 499 90.151000 382 4930 3 chr6A.!!$F3 4548
16 TraesCS6D01G064700 chrUn 27471829 27476419 4590 False 1053.750000 3201 90.536500 898 5025 4 chrUn.!!$F3 4127
17 TraesCS6D01G064700 chrUn 137910873 137913821 2948 True 246.833333 488 83.533000 1858 4944 3 chrUn.!!$R3 3086
18 TraesCS6D01G064700 chr2D 48562517 48568284 5767 False 767.250000 1893 86.003750 382 5025 4 chr2D.!!$F2 4643
19 TraesCS6D01G064700 chr5A 655640386 655642773 2387 False 402.666667 455 86.561000 894 1347 3 chr5A.!!$F1 453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.250513 GGCCGAGAACAGTTGGATCT 59.749 55.000 0.00 0.00 0.00 2.75 F
1010 3247 1.202428 GGAAGAGGCGATGTACAGGAC 60.202 57.143 0.33 0.00 0.00 3.85 F
1061 3355 0.241749 TGCTTGCTCGGAATTGCTTG 59.758 50.000 0.00 0.00 0.00 4.01 F
2998 11097 0.035152 AGGCGAACCATCTTGATGCA 60.035 50.000 5.16 0.00 39.06 3.96 F
4567 12898 1.093159 GCTGCTGATCAGGGTTCAAG 58.907 55.000 23.89 8.45 43.06 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1042 3282 0.241749 CAAGCAATTCCGAGCAAGCA 59.758 50.000 0.0 0.0 0.00 3.91 R
2970 11069 0.537188 ATGGTTCGCCTCGTCAGAAT 59.463 50.000 0.0 0.0 38.36 2.40 R
3009 11108 3.056250 CCCATCTCCAATCACCGATCTAG 60.056 52.174 0.0 0.0 0.00 2.43 R
4616 12982 1.306482 TCCTCTCTGGGAAGCCTGG 60.306 63.158 0.0 0.0 36.20 4.45 R
5564 16192 0.323451 GGAAACCCATCCCACCACTC 60.323 60.000 0.0 0.0 33.05 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.768834 GGCCGAGAACAGTTGGATC 58.231 57.895 0.00 0.00 0.00 3.36
19 20 0.250513 GGCCGAGAACAGTTGGATCT 59.749 55.000 0.00 0.00 0.00 2.75
20 21 1.363744 GCCGAGAACAGTTGGATCTG 58.636 55.000 0.00 0.00 40.80 2.90
22 23 2.611518 CCGAGAACAGTTGGATCTGTC 58.388 52.381 0.00 0.00 46.25 3.51
23 24 2.232452 CCGAGAACAGTTGGATCTGTCT 59.768 50.000 0.00 0.55 46.25 3.41
24 25 3.506810 CGAGAACAGTTGGATCTGTCTC 58.493 50.000 0.00 7.62 46.25 3.36
25 26 3.192422 CGAGAACAGTTGGATCTGTCTCT 59.808 47.826 16.07 13.00 46.25 3.10
26 27 4.321601 CGAGAACAGTTGGATCTGTCTCTT 60.322 45.833 16.07 0.00 46.25 2.85
27 28 5.546526 GAGAACAGTTGGATCTGTCTCTTT 58.453 41.667 0.00 0.00 46.25 2.52
28 29 5.303971 AGAACAGTTGGATCTGTCTCTTTG 58.696 41.667 0.00 0.00 46.25 2.77
29 30 4.013267 ACAGTTGGATCTGTCTCTTTGG 57.987 45.455 0.00 0.00 44.07 3.28
30 31 3.244700 ACAGTTGGATCTGTCTCTTTGGG 60.245 47.826 0.00 0.00 44.07 4.12
31 32 2.982488 AGTTGGATCTGTCTCTTTGGGT 59.018 45.455 0.00 0.00 0.00 4.51
32 33 3.008485 AGTTGGATCTGTCTCTTTGGGTC 59.992 47.826 0.00 0.00 0.00 4.46
33 34 2.907892 TGGATCTGTCTCTTTGGGTCT 58.092 47.619 0.00 0.00 0.00 3.85
34 35 3.251484 TGGATCTGTCTCTTTGGGTCTT 58.749 45.455 0.00 0.00 0.00 3.01
35 36 3.652869 TGGATCTGTCTCTTTGGGTCTTT 59.347 43.478 0.00 0.00 0.00 2.52
36 37 4.104738 TGGATCTGTCTCTTTGGGTCTTTT 59.895 41.667 0.00 0.00 0.00 2.27
37 38 5.073428 GGATCTGTCTCTTTGGGTCTTTTT 58.927 41.667 0.00 0.00 0.00 1.94
38 39 6.183361 TGGATCTGTCTCTTTGGGTCTTTTTA 60.183 38.462 0.00 0.00 0.00 1.52
39 40 6.887002 GGATCTGTCTCTTTGGGTCTTTTTAT 59.113 38.462 0.00 0.00 0.00 1.40
40 41 8.047310 GGATCTGTCTCTTTGGGTCTTTTTATA 58.953 37.037 0.00 0.00 0.00 0.98
41 42 9.620259 GATCTGTCTCTTTGGGTCTTTTTATAT 57.380 33.333 0.00 0.00 0.00 0.86
42 43 9.981460 ATCTGTCTCTTTGGGTCTTTTTATATT 57.019 29.630 0.00 0.00 0.00 1.28
43 44 9.807921 TCTGTCTCTTTGGGTCTTTTTATATTT 57.192 29.630 0.00 0.00 0.00 1.40
44 45 9.846248 CTGTCTCTTTGGGTCTTTTTATATTTG 57.154 33.333 0.00 0.00 0.00 2.32
45 46 9.362151 TGTCTCTTTGGGTCTTTTTATATTTGT 57.638 29.630 0.00 0.00 0.00 2.83
89 90 9.074576 TGTATAGATATAGATGTGGTTCAACGT 57.925 33.333 0.00 0.00 0.00 3.99
90 91 9.343103 GTATAGATATAGATGTGGTTCAACGTG 57.657 37.037 0.00 0.00 0.00 4.49
91 92 5.601662 AGATATAGATGTGGTTCAACGTGG 58.398 41.667 0.00 0.00 0.00 4.94
92 93 3.973206 ATAGATGTGGTTCAACGTGGA 57.027 42.857 0.00 0.00 0.00 4.02
93 94 2.169832 AGATGTGGTTCAACGTGGAG 57.830 50.000 0.00 0.00 0.00 3.86
94 95 1.416401 AGATGTGGTTCAACGTGGAGT 59.584 47.619 0.00 0.00 0.00 3.85
95 96 2.158813 AGATGTGGTTCAACGTGGAGTT 60.159 45.455 0.00 0.00 45.45 3.01
96 97 2.116827 TGTGGTTCAACGTGGAGTTT 57.883 45.000 0.00 0.00 42.02 2.66
97 98 2.438411 TGTGGTTCAACGTGGAGTTTT 58.562 42.857 0.00 0.00 42.02 2.43
98 99 2.820787 TGTGGTTCAACGTGGAGTTTTT 59.179 40.909 0.00 0.00 42.02 1.94
99 100 3.119779 TGTGGTTCAACGTGGAGTTTTTC 60.120 43.478 0.00 0.00 42.02 2.29
100 101 3.128068 GTGGTTCAACGTGGAGTTTTTCT 59.872 43.478 0.00 0.00 42.02 2.52
101 102 3.759618 TGGTTCAACGTGGAGTTTTTCTT 59.240 39.130 0.00 0.00 42.02 2.52
102 103 4.218852 TGGTTCAACGTGGAGTTTTTCTTT 59.781 37.500 0.00 0.00 42.02 2.52
103 104 5.165676 GGTTCAACGTGGAGTTTTTCTTTT 58.834 37.500 0.00 0.00 42.02 2.27
104 105 5.636121 GGTTCAACGTGGAGTTTTTCTTTTT 59.364 36.000 0.00 0.00 42.02 1.94
211 219 6.761242 GCCATCAGGGTTTTCCAAATAAATAC 59.239 38.462 0.00 0.00 42.91 1.89
538 2191 1.380515 CCTTCTCCTCCGAGCTCCA 60.381 63.158 8.47 0.00 35.94 3.86
645 2535 2.105128 GGCATGGAGTCGACCTCG 59.895 66.667 13.01 0.00 41.46 4.63
681 2586 2.362503 TCGACCTCCACAGCGGAT 60.363 61.111 0.00 0.00 45.19 4.18
905 3124 2.633657 CAGGTGACGTGCTGTTGC 59.366 61.111 0.00 0.00 40.20 4.17
1010 3247 1.202428 GGAAGAGGCGATGTACAGGAC 60.202 57.143 0.33 0.00 0.00 3.85
1042 3282 6.825721 GGTATGTCATGAATCTGGTCTTCTTT 59.174 38.462 0.00 0.00 0.00 2.52
1056 3350 3.057946 GTCTTCTTTGCTTGCTCGGAATT 60.058 43.478 0.00 0.00 0.00 2.17
1057 3351 2.995466 TCTTTGCTTGCTCGGAATTG 57.005 45.000 0.00 0.00 0.00 2.32
1058 3352 1.068333 TCTTTGCTTGCTCGGAATTGC 60.068 47.619 0.00 0.00 0.00 3.56
1059 3353 0.961019 TTTGCTTGCTCGGAATTGCT 59.039 45.000 0.00 0.00 0.00 3.91
1060 3354 0.961019 TTGCTTGCTCGGAATTGCTT 59.039 45.000 0.00 0.00 0.00 3.91
1061 3355 0.241749 TGCTTGCTCGGAATTGCTTG 59.758 50.000 0.00 0.00 0.00 4.01
1062 3356 1.074872 GCTTGCTCGGAATTGCTTGC 61.075 55.000 0.00 0.00 0.00 4.01
1063 3357 0.524862 CTTGCTCGGAATTGCTTGCT 59.475 50.000 11.01 0.00 0.00 3.91
1064 3358 0.523072 TTGCTCGGAATTGCTTGCTC 59.477 50.000 11.01 0.00 0.00 4.26
1070 3364 0.881118 GGAATTGCTTGCTCGGAACA 59.119 50.000 0.00 0.00 0.00 3.18
1076 3376 1.009829 GCTTGCTCGGAACAGGTATG 58.990 55.000 0.00 0.00 0.00 2.39
1079 3379 1.262417 TGCTCGGAACAGGTATGTCA 58.738 50.000 0.00 0.00 39.29 3.58
1081 3381 2.205074 GCTCGGAACAGGTATGTCATG 58.795 52.381 0.00 0.00 39.29 3.07
1238 5508 2.912956 AGGTAGGCAAGGATCTTGTTGA 59.087 45.455 9.07 0.00 0.00 3.18
1249 5519 5.923204 AGGATCTTGTTGAGATTATTCGCT 58.077 37.500 0.00 0.00 45.17 4.93
1370 5681 3.075432 TGGGGAGATACGAGGATCATGTA 59.925 47.826 0.00 0.00 33.17 2.29
1500 5857 2.301346 GGGATTACTTGGCCAGACATG 58.699 52.381 5.11 0.00 0.00 3.21
1528 5971 1.682854 TGTTGCCTGAAAGCCTGAAAG 59.317 47.619 0.00 0.00 0.00 2.62
1642 6672 4.963276 TCACCTTTGCTAATCCGAAATG 57.037 40.909 0.00 0.00 0.00 2.32
1654 6685 5.551760 AATCCGAAATGTGTGATCTTGAC 57.448 39.130 0.00 0.00 0.00 3.18
1684 7290 2.166459 TGTGGAGCAGGAGAAACTATCG 59.834 50.000 0.00 0.00 0.00 2.92
1699 7305 7.156673 AGAAACTATCGCAAGTAAAGGTTGTA 58.843 34.615 0.00 0.00 39.48 2.41
1724 7330 1.949257 GTGAAACCCAAGCAGGACG 59.051 57.895 0.00 0.00 41.22 4.79
1874 8827 1.299976 GGCTCGTGGGTCTTTCCAT 59.700 57.895 0.00 0.00 39.26 3.41
1928 8917 4.355543 TCTTGTTGAAACTGTTGTCTGC 57.644 40.909 0.00 0.00 0.00 4.26
2138 9140 4.320870 GACCACTTTAGGATTTGGTCGAA 58.679 43.478 3.95 0.00 46.42 3.71
2415 9500 2.105306 TGGCAGGATGATGTATGGTCTG 59.895 50.000 0.00 0.00 39.69 3.51
2557 9954 4.949856 GGAGGTGCAAGAAAAATCAGGATA 59.050 41.667 0.00 0.00 0.00 2.59
2558 9955 5.163612 GGAGGTGCAAGAAAAATCAGGATAC 60.164 44.000 0.00 0.00 0.00 2.24
2584 9981 9.699985 CTAAATACGTGATTAGTATACTAGCGG 57.300 37.037 21.04 13.45 34.05 5.52
2586 9983 7.678947 ATACGTGATTAGTATACTAGCGGTT 57.321 36.000 21.04 11.92 33.46 4.44
2687 10479 3.724478 TGTGATAGTCTGATGGGACCTT 58.276 45.455 0.00 0.00 36.95 3.50
2700 10497 4.460948 TGGGACCTTAATCGTACTTGTC 57.539 45.455 0.00 0.00 0.00 3.18
2704 10501 3.858247 ACCTTAATCGTACTTGTCCTGC 58.142 45.455 0.00 0.00 0.00 4.85
2919 11018 8.910666 CGTAATTTGAATTCTTGTATTTGTGCA 58.089 29.630 7.05 0.00 0.00 4.57
2970 11069 5.016051 GTCAGAAGACATCATAGGCTTGA 57.984 43.478 0.00 0.00 44.34 3.02
2998 11097 0.035152 AGGCGAACCATCTTGATGCA 60.035 50.000 5.16 0.00 39.06 3.96
3009 11108 5.413833 ACCATCTTGATGCATATTCGGAATC 59.586 40.000 6.49 0.00 0.00 2.52
3098 11198 4.660771 TCCTCCCCTCTTTTCCTTATCATC 59.339 45.833 0.00 0.00 0.00 2.92
3108 11208 5.483685 TTTCCTTATCATCGGATGTAGGG 57.516 43.478 23.33 19.71 37.31 3.53
3177 11280 5.435686 AGTTATTGATAGGCAGGACACAA 57.564 39.130 0.00 0.00 0.00 3.33
3186 11289 2.158475 AGGCAGGACACAAATGAGGAAA 60.158 45.455 0.00 0.00 0.00 3.13
3279 11406 3.817647 CAGGAGCAGCAAAGTAAGTTCTT 59.182 43.478 0.00 0.00 0.00 2.52
3322 11483 5.664294 TTCTTGGATAAACATGCTTGCAT 57.336 34.783 1.81 1.81 0.00 3.96
3325 11492 3.363627 TGGATAAACATGCTTGCATGGA 58.636 40.909 30.86 19.68 36.91 3.41
3401 11578 7.013178 TCACTATCTTTGTTTGTCATTTGCAGA 59.987 33.333 0.00 0.00 0.00 4.26
3451 11630 5.276270 GCATGCCATCACAGTTTTATACAG 58.724 41.667 6.36 0.00 0.00 2.74
3461 11640 4.518970 ACAGTTTTATACAGTGTTGGCAGG 59.481 41.667 0.00 0.00 0.00 4.85
3473 11652 4.051237 GTGTTGGCAGGAACTCAAATTTC 58.949 43.478 0.00 0.00 34.60 2.17
3708 11923 9.383519 TCTTAGCTGTGTTCTTTTATATCTTGG 57.616 33.333 0.00 0.00 0.00 3.61
3800 12025 2.424956 GCTGGTCCTTTCAGGCATTTAG 59.575 50.000 0.00 0.00 34.61 1.85
3830 12073 9.910267 TCTGATCAAGAAAATAATGAGATGGAA 57.090 29.630 0.00 0.00 29.54 3.53
3952 12211 1.185315 ATGTGCCATTTTTAGCCGCT 58.815 45.000 0.00 0.00 0.00 5.52
4330 12616 4.838486 CGCTCCAGCTCGTCGGTC 62.838 72.222 0.00 0.00 39.32 4.79
4331 12617 3.444805 GCTCCAGCTCGTCGGTCT 61.445 66.667 0.00 0.00 38.21 3.85
4494 12780 6.480320 GGCAAATCACTACGAAATCATCTACT 59.520 38.462 0.00 0.00 0.00 2.57
4567 12898 1.093159 GCTGCTGATCAGGGTTCAAG 58.907 55.000 23.89 8.45 43.06 3.02
4578 12909 3.964688 TCAGGGTTCAAGTCAACAGACTA 59.035 43.478 0.00 0.00 41.62 2.59
4616 12982 3.657634 TGCTGATCAGAGTTCAAGTCAC 58.342 45.455 27.04 4.35 0.00 3.67
4633 12999 1.614824 ACCAGGCTTCCCAGAGAGG 60.615 63.158 0.00 0.00 37.03 3.69
4673 13085 5.491982 AGTTGAAGTGAATAGATTCCGCTT 58.508 37.500 8.15 8.15 35.97 4.68
4722 13134 4.808414 ATGAATGAGAGTGTTTCCGAGA 57.192 40.909 0.00 0.00 0.00 4.04
4739 13151 5.084519 TCCGAGATTAGTGGTAGGCATATT 58.915 41.667 0.00 0.00 0.00 1.28
4878 13382 7.223582 GGTATACAGTGAATCTTGTGTGATCAG 59.776 40.741 5.01 0.00 0.00 2.90
4880 13384 4.993584 ACAGTGAATCTTGTGTGATCAGAC 59.006 41.667 15.80 15.80 0.00 3.51
4892 13396 5.053145 GTGTGATCAGACTGAACTTCTTGT 58.947 41.667 15.42 0.00 0.00 3.16
4895 13399 7.386299 GTGTGATCAGACTGAACTTCTTGTTAT 59.614 37.037 15.42 0.00 39.30 1.89
4900 13404 8.256611 TCAGACTGAACTTCTTGTTATATTGC 57.743 34.615 1.64 0.00 39.30 3.56
4901 13405 7.334421 TCAGACTGAACTTCTTGTTATATTGCC 59.666 37.037 1.64 0.00 39.30 4.52
4902 13406 7.119699 CAGACTGAACTTCTTGTTATATTGCCA 59.880 37.037 0.00 0.00 39.30 4.92
4909 13413 3.947196 TCTTGTTATATTGCCAGCTGGTG 59.053 43.478 32.81 10.23 37.57 4.17
5030 14007 2.029623 GCTGATGCCACTGGAATGATT 58.970 47.619 0.00 0.00 0.00 2.57
5031 14008 2.223735 GCTGATGCCACTGGAATGATTG 60.224 50.000 0.00 0.00 0.00 2.67
5032 14009 3.284617 CTGATGCCACTGGAATGATTGA 58.715 45.455 0.00 0.00 0.00 2.57
5033 14010 3.018856 TGATGCCACTGGAATGATTGAC 58.981 45.455 0.00 0.00 0.00 3.18
5034 14011 1.838112 TGCCACTGGAATGATTGACC 58.162 50.000 0.00 0.00 0.00 4.02
5035 14012 1.075212 TGCCACTGGAATGATTGACCA 59.925 47.619 0.00 0.00 0.00 4.02
5041 14018 3.276857 CTGGAATGATTGACCAGTCTGG 58.723 50.000 17.88 17.88 44.06 3.86
5042 14019 2.025981 TGGAATGATTGACCAGTCTGGG 60.026 50.000 23.06 5.37 43.37 4.45
5043 14020 2.648059 GAATGATTGACCAGTCTGGGG 58.352 52.381 23.06 0.00 43.37 4.96
5045 14022 0.692476 TGATTGACCAGTCTGGGGTG 59.308 55.000 23.06 0.00 43.37 4.61
5046 14023 0.693049 GATTGACCAGTCTGGGGTGT 59.307 55.000 23.06 6.34 43.37 4.16
5047 14024 1.906574 GATTGACCAGTCTGGGGTGTA 59.093 52.381 23.06 4.10 43.37 2.90
5049 14026 1.348064 TGACCAGTCTGGGGTGTAAG 58.652 55.000 23.06 0.00 43.37 2.34
5050 14027 1.349067 GACCAGTCTGGGGTGTAAGT 58.651 55.000 23.06 0.00 43.37 2.24
5051 14028 1.275573 GACCAGTCTGGGGTGTAAGTC 59.724 57.143 23.06 5.05 43.37 3.01
5052 14029 1.132817 ACCAGTCTGGGGTGTAAGTCT 60.133 52.381 23.06 0.00 43.37 3.24
5055 14032 3.181443 CCAGTCTGGGGTGTAAGTCTTTT 60.181 47.826 11.46 0.00 32.67 2.27
5056 14033 4.461198 CAGTCTGGGGTGTAAGTCTTTTT 58.539 43.478 0.00 0.00 0.00 1.94
5057 14034 4.275936 CAGTCTGGGGTGTAAGTCTTTTTG 59.724 45.833 0.00 0.00 0.00 2.44
5059 14036 3.460340 TCTGGGGTGTAAGTCTTTTTGGA 59.540 43.478 0.00 0.00 0.00 3.53
5060 14037 4.105697 TCTGGGGTGTAAGTCTTTTTGGAT 59.894 41.667 0.00 0.00 0.00 3.41
5090 14251 9.738832 TGTAAGACATTTTAGCAGTTTAAAACC 57.261 29.630 0.00 0.00 35.88 3.27
5091 14252 9.188588 GTAAGACATTTTAGCAGTTTAAAACCC 57.811 33.333 0.00 0.00 35.88 4.11
5092 14253 7.597288 AGACATTTTAGCAGTTTAAAACCCT 57.403 32.000 0.00 0.00 35.88 4.34
5093 14254 7.658261 AGACATTTTAGCAGTTTAAAACCCTC 58.342 34.615 0.00 0.00 35.88 4.30
5095 14256 7.433680 ACATTTTAGCAGTTTAAAACCCTCTG 58.566 34.615 0.00 0.00 35.88 3.35
5099 14260 5.515797 AGCAGTTTAAAACCCTCTGTTTC 57.484 39.130 5.09 0.00 46.39 2.78
5100 14261 4.036380 AGCAGTTTAAAACCCTCTGTTTCG 59.964 41.667 5.09 0.00 46.39 3.46
5101 14262 4.035909 GCAGTTTAAAACCCTCTGTTTCGA 59.964 41.667 5.09 0.00 46.39 3.71
5103 14264 6.557110 CAGTTTAAAACCCTCTGTTTCGAAA 58.443 36.000 6.47 6.47 46.39 3.46
5105 14266 7.167468 CAGTTTAAAACCCTCTGTTTCGAAATG 59.833 37.037 14.69 10.34 46.39 2.32
5106 14267 6.702716 TTAAAACCCTCTGTTTCGAAATGT 57.297 33.333 14.69 2.56 46.39 2.71
5109 14270 5.941948 AACCCTCTGTTTCGAAATGTAAG 57.058 39.130 14.69 9.70 31.47 2.34
5111 14272 4.995487 ACCCTCTGTTTCGAAATGTAAGAC 59.005 41.667 14.69 0.02 0.00 3.01
5112 14273 4.994852 CCCTCTGTTTCGAAATGTAAGACA 59.005 41.667 14.69 5.15 0.00 3.41
5128 14289 8.816640 ATGTAAGACATTTTGGCAGTTTAAAG 57.183 30.769 0.00 0.00 34.67 1.85
5130 14291 8.470805 TGTAAGACATTTTGGCAGTTTAAAGAA 58.529 29.630 0.00 0.00 0.00 2.52
5131 14292 9.308318 GTAAGACATTTTGGCAGTTTAAAGAAA 57.692 29.630 0.00 0.00 0.00 2.52
5132 14293 7.770801 AGACATTTTGGCAGTTTAAAGAAAC 57.229 32.000 0.00 0.00 44.56 2.78
5133 14294 7.327214 AGACATTTTGGCAGTTTAAAGAAACA 58.673 30.769 3.60 0.00 46.30 2.83
5134 14295 7.492344 AGACATTTTGGCAGTTTAAAGAAACAG 59.508 33.333 3.60 0.00 46.30 3.16
5136 14297 7.492344 ACATTTTGGCAGTTTAAAGAAACAGAG 59.508 33.333 3.60 0.00 46.30 3.35
5137 14298 5.514274 TTGGCAGTTTAAAGAAACAGAGG 57.486 39.130 3.60 0.00 46.30 3.69
5140 14301 5.763204 TGGCAGTTTAAAGAAACAGAGGTAG 59.237 40.000 3.60 0.00 46.30 3.18
5142 14303 6.932960 GGCAGTTTAAAGAAACAGAGGTAGTA 59.067 38.462 3.60 0.00 46.30 1.82
5145 14306 9.490379 CAGTTTAAAGAAACAGAGGTAGTACAT 57.510 33.333 2.06 0.00 46.30 2.29
5151 14312 9.841295 AAAGAAACAGAGGTAGTACATTACAAA 57.159 29.630 2.06 0.00 0.00 2.83
5154 14315 9.918630 GAAACAGAGGTAGTACATTACAAAGTA 57.081 33.333 2.06 0.00 0.00 2.24
5155 14316 9.924650 AAACAGAGGTAGTACATTACAAAGTAG 57.075 33.333 2.06 0.00 0.00 2.57
5156 14317 8.647256 ACAGAGGTAGTACATTACAAAGTAGT 57.353 34.615 2.06 0.00 0.00 2.73
5157 14318 9.745018 ACAGAGGTAGTACATTACAAAGTAGTA 57.255 33.333 2.06 0.00 0.00 1.82
5162 14323 5.654497 AGTACATTACAAAGTAGTACCGGC 58.346 41.667 0.00 0.00 36.58 6.13
5163 14324 3.865446 ACATTACAAAGTAGTACCGGCC 58.135 45.455 0.00 0.00 0.00 6.13
5164 14325 3.261390 ACATTACAAAGTAGTACCGGCCA 59.739 43.478 0.00 0.00 0.00 5.36
5165 14326 3.598019 TTACAAAGTAGTACCGGCCAG 57.402 47.619 0.00 0.00 0.00 4.85
5175 14336 2.203280 CCGGCCAGGTTGTTGTGA 60.203 61.111 2.24 0.00 34.51 3.58
5178 14339 0.240945 CGGCCAGGTTGTTGTGATTC 59.759 55.000 2.24 0.00 0.00 2.52
5179 14340 1.327303 GGCCAGGTTGTTGTGATTCA 58.673 50.000 0.00 0.00 0.00 2.57
5181 14342 2.102252 GGCCAGGTTGTTGTGATTCAAA 59.898 45.455 0.00 0.00 37.81 2.69
5182 14343 3.123050 GCCAGGTTGTTGTGATTCAAAC 58.877 45.455 0.00 0.00 37.81 2.93
5184 14345 4.362279 CCAGGTTGTTGTGATTCAAACAG 58.638 43.478 11.52 0.00 37.81 3.16
5185 14346 3.798337 CAGGTTGTTGTGATTCAAACAGC 59.202 43.478 14.28 14.28 37.81 4.40
5187 14348 4.160252 AGGTTGTTGTGATTCAAACAGCTT 59.840 37.500 18.29 13.01 37.81 3.74
5188 14349 4.504097 GGTTGTTGTGATTCAAACAGCTTC 59.496 41.667 18.29 7.82 37.81 3.86
5190 14351 4.671377 TGTTGTGATTCAAACAGCTTCAC 58.329 39.130 5.66 5.66 37.81 3.18
5194 14355 5.342433 TGTGATTCAAACAGCTTCACAAAG 58.658 37.500 11.70 0.00 42.53 2.77
5208 14369 2.307392 TCACAAAGCAGGCAGGGTAATA 59.693 45.455 0.00 0.00 0.00 0.98
5210 14371 3.067180 CACAAAGCAGGCAGGGTAATATG 59.933 47.826 0.00 0.00 0.00 1.78
5213 14374 2.412591 AGCAGGCAGGGTAATATGAGT 58.587 47.619 0.00 0.00 0.00 3.41
5219 14380 6.072452 GCAGGCAGGGTAATATGAGTAAATTC 60.072 42.308 0.00 0.00 0.00 2.17
5221 14382 7.389053 CAGGCAGGGTAATATGAGTAAATTCTC 59.611 40.741 0.00 0.00 35.28 2.87
5222 14383 6.655425 GGCAGGGTAATATGAGTAAATTCTCC 59.345 42.308 0.00 0.00 33.93 3.71
5223 14384 6.369065 GCAGGGTAATATGAGTAAATTCTCCG 59.631 42.308 0.00 0.00 33.93 4.63
5224 14385 7.667557 CAGGGTAATATGAGTAAATTCTCCGA 58.332 38.462 0.00 0.00 33.93 4.55
5225 14386 8.148351 CAGGGTAATATGAGTAAATTCTCCGAA 58.852 37.037 0.00 0.00 33.93 4.30
5226 14387 8.711170 AGGGTAATATGAGTAAATTCTCCGAAA 58.289 33.333 0.00 0.00 33.93 3.46
5240 14401 0.729140 CCGAAATCAGTTGCGTTGCC 60.729 55.000 0.00 0.00 0.00 4.52
5246 14407 0.880278 TCAGTTGCGTTGCCAGAGAC 60.880 55.000 0.00 0.00 0.00 3.36
5288 14449 2.483745 CTCGTAGGCAGCGAACGA 59.516 61.111 17.09 17.09 42.83 3.85
5337 14593 2.267681 CTACTCGTCGGACACAGGCC 62.268 65.000 9.10 0.00 0.00 5.19
5465 14723 2.046604 GGGTCGCCACCAAGTACC 60.047 66.667 1.96 0.00 45.94 3.34
5484 14742 2.905736 ACCCTTGGGTTTGATTTGGATG 59.094 45.455 5.34 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.250513 AGATCCAACTGTTCTCGGCC 59.749 55.000 0.00 0.00 0.00 6.13
9 10 3.244700 ACCCAAAGAGACAGATCCAACTG 60.245 47.826 0.00 0.00 42.78 3.16
10 11 2.982488 ACCCAAAGAGACAGATCCAACT 59.018 45.455 0.00 0.00 0.00 3.16
11 12 3.008485 AGACCCAAAGAGACAGATCCAAC 59.992 47.826 0.00 0.00 0.00 3.77
12 13 3.251484 AGACCCAAAGAGACAGATCCAA 58.749 45.455 0.00 0.00 0.00 3.53
13 14 2.907892 AGACCCAAAGAGACAGATCCA 58.092 47.619 0.00 0.00 0.00 3.41
14 15 3.990959 AAGACCCAAAGAGACAGATCC 57.009 47.619 0.00 0.00 0.00 3.36
15 16 7.929941 ATAAAAAGACCCAAAGAGACAGATC 57.070 36.000 0.00 0.00 0.00 2.75
16 17 9.981460 AATATAAAAAGACCCAAAGAGACAGAT 57.019 29.630 0.00 0.00 0.00 2.90
17 18 9.807921 AAATATAAAAAGACCCAAAGAGACAGA 57.192 29.630 0.00 0.00 0.00 3.41
18 19 9.846248 CAAATATAAAAAGACCCAAAGAGACAG 57.154 33.333 0.00 0.00 0.00 3.51
19 20 9.362151 ACAAATATAAAAAGACCCAAAGAGACA 57.638 29.630 0.00 0.00 0.00 3.41
63 64 9.074576 ACGTTGAACCACATCTATATCTATACA 57.925 33.333 0.00 0.00 0.00 2.29
64 65 9.343103 CACGTTGAACCACATCTATATCTATAC 57.657 37.037 0.00 0.00 0.00 1.47
65 66 8.520351 CCACGTTGAACCACATCTATATCTATA 58.480 37.037 0.00 0.00 0.00 1.31
66 67 7.232737 TCCACGTTGAACCACATCTATATCTAT 59.767 37.037 0.00 0.00 0.00 1.98
67 68 6.548251 TCCACGTTGAACCACATCTATATCTA 59.452 38.462 0.00 0.00 0.00 1.98
68 69 5.362717 TCCACGTTGAACCACATCTATATCT 59.637 40.000 0.00 0.00 0.00 1.98
69 70 5.597806 TCCACGTTGAACCACATCTATATC 58.402 41.667 0.00 0.00 0.00 1.63
70 71 5.128827 ACTCCACGTTGAACCACATCTATAT 59.871 40.000 0.00 0.00 0.00 0.86
71 72 4.464951 ACTCCACGTTGAACCACATCTATA 59.535 41.667 0.00 0.00 0.00 1.31
72 73 3.260884 ACTCCACGTTGAACCACATCTAT 59.739 43.478 0.00 0.00 0.00 1.98
73 74 2.631062 ACTCCACGTTGAACCACATCTA 59.369 45.455 0.00 0.00 0.00 1.98
74 75 1.416401 ACTCCACGTTGAACCACATCT 59.584 47.619 0.00 0.00 0.00 2.90
75 76 1.878953 ACTCCACGTTGAACCACATC 58.121 50.000 0.00 0.00 0.00 3.06
76 77 2.341846 AACTCCACGTTGAACCACAT 57.658 45.000 0.00 0.00 33.72 3.21
77 78 2.116827 AAACTCCACGTTGAACCACA 57.883 45.000 0.00 0.00 35.61 4.17
78 79 3.128068 AGAAAAACTCCACGTTGAACCAC 59.872 43.478 0.00 0.00 35.61 4.16
79 80 3.349022 AGAAAAACTCCACGTTGAACCA 58.651 40.909 0.00 0.00 35.61 3.67
80 81 4.365899 AAGAAAAACTCCACGTTGAACC 57.634 40.909 0.00 0.00 35.61 3.62
81 82 6.699895 AAAAAGAAAAACTCCACGTTGAAC 57.300 33.333 0.00 0.00 35.61 3.18
101 102 2.490115 ACTCCACGTTGAAGCACAAAAA 59.510 40.909 0.00 0.00 40.36 1.94
102 103 2.088423 ACTCCACGTTGAAGCACAAAA 58.912 42.857 0.00 0.00 40.36 2.44
103 104 1.745232 ACTCCACGTTGAAGCACAAA 58.255 45.000 0.00 0.00 40.36 2.83
104 105 1.745232 AACTCCACGTTGAAGCACAA 58.255 45.000 0.00 0.00 33.72 3.33
109 110 6.944557 AAAAAGAAAAACTCCACGTTGAAG 57.055 33.333 0.00 0.00 35.61 3.02
211 219 0.035056 ATGGGAGAAGCTTTCACGGG 60.035 55.000 0.00 0.00 0.00 5.28
730 2639 4.778415 CACTCGTCTCCGCCACCG 62.778 72.222 0.00 0.00 0.00 4.94
868 3014 0.321564 CTGTTCCCATCGCCTGTTGA 60.322 55.000 0.00 0.00 0.00 3.18
905 3124 4.455606 ACTCCAAGAACTCCAAGAAACAG 58.544 43.478 0.00 0.00 0.00 3.16
1010 3247 4.509230 CAGATTCATGACATACCTGTTCCG 59.491 45.833 0.00 0.00 35.14 4.30
1042 3282 0.241749 CAAGCAATTCCGAGCAAGCA 59.758 50.000 0.00 0.00 0.00 3.91
1056 3350 0.613260 ATACCTGTTCCGAGCAAGCA 59.387 50.000 0.00 0.00 0.00 3.91
1057 3351 1.009829 CATACCTGTTCCGAGCAAGC 58.990 55.000 0.00 0.00 0.00 4.01
1058 3352 2.271800 GACATACCTGTTCCGAGCAAG 58.728 52.381 0.00 0.00 35.14 4.01
1059 3353 1.621317 TGACATACCTGTTCCGAGCAA 59.379 47.619 0.00 0.00 35.14 3.91
1060 3354 1.262417 TGACATACCTGTTCCGAGCA 58.738 50.000 0.00 0.00 35.14 4.26
1061 3355 2.159099 TCATGACATACCTGTTCCGAGC 60.159 50.000 0.00 0.00 35.14 5.03
1062 3356 3.131223 ACTCATGACATACCTGTTCCGAG 59.869 47.826 0.00 0.00 35.14 4.63
1063 3357 3.096852 ACTCATGACATACCTGTTCCGA 58.903 45.455 0.00 0.00 35.14 4.55
1064 3358 3.131223 AGACTCATGACATACCTGTTCCG 59.869 47.826 0.00 0.00 35.14 4.30
1070 3364 8.103305 ACATTTTAACAGACTCATGACATACCT 58.897 33.333 0.00 0.00 0.00 3.08
1076 3376 6.381801 CCCAACATTTTAACAGACTCATGAC 58.618 40.000 0.00 0.00 0.00 3.06
1079 3379 5.393866 ACCCCAACATTTTAACAGACTCAT 58.606 37.500 0.00 0.00 0.00 2.90
1081 3381 5.508994 CCAACCCCAACATTTTAACAGACTC 60.509 44.000 0.00 0.00 0.00 3.36
1238 5508 8.723942 AAATCTTGAACAGTAGCGAATAATCT 57.276 30.769 0.00 0.00 0.00 2.40
1249 5519 6.428083 TGGACACCTAAATCTTGAACAGTA 57.572 37.500 0.00 0.00 0.00 2.74
1441 5760 7.998964 AGATTAACTTCCCCTATAACACCATTG 59.001 37.037 0.00 0.00 0.00 2.82
1500 5857 2.734492 GCTTTCAGGCAACAGATGATGC 60.734 50.000 6.53 6.53 42.21 3.91
1642 6672 4.627467 ACAGAATTAGCGTCAAGATCACAC 59.373 41.667 0.00 0.00 0.00 3.82
1684 7290 6.484308 TCACCTTTACTACAACCTTTACTTGC 59.516 38.462 0.00 0.00 0.00 4.01
1699 7305 3.222603 CTGCTTGGGTTTCACCTTTACT 58.777 45.455 0.00 0.00 38.64 2.24
1724 7330 7.642082 TCTGACTCCAGTTTATACCTAGTTC 57.358 40.000 0.00 0.00 41.16 3.01
1874 8827 7.167924 TGCTTCAAAATACAATGCCAGATTA 57.832 32.000 0.00 0.00 0.00 1.75
1928 8917 4.223477 ACCTCATGATTTCCCCACATTTTG 59.777 41.667 0.00 0.00 0.00 2.44
2080 9082 6.343716 TGTGAATGGCAAATGATTTACAGT 57.656 33.333 0.00 0.00 0.00 3.55
2138 9140 5.752955 CCAATCGACAAAATGGTGAAACTTT 59.247 36.000 0.00 0.00 36.74 2.66
2209 9213 6.825721 TCCAAAGCTTCTTTATTTTTGGCAAA 59.174 30.769 8.93 8.93 44.58 3.68
2355 9437 7.968246 ACAGAATCAACAAGATCGAGTATTTG 58.032 34.615 0.00 0.00 35.39 2.32
2504 9899 5.999205 ACATTACATCAGGCAAAATGGAA 57.001 34.783 0.00 0.00 32.97 3.53
2558 9955 9.699985 CCGCTAGTATACTAATCACGTATTTAG 57.300 37.037 13.51 12.66 0.00 1.85
2559 9956 9.219603 ACCGCTAGTATACTAATCACGTATTTA 57.780 33.333 13.51 0.00 0.00 1.40
2560 9957 8.103948 ACCGCTAGTATACTAATCACGTATTT 57.896 34.615 13.51 0.00 0.00 1.40
2561 9958 7.678947 ACCGCTAGTATACTAATCACGTATT 57.321 36.000 13.51 0.00 0.00 1.89
2562 9959 7.678947 AACCGCTAGTATACTAATCACGTAT 57.321 36.000 13.51 4.14 0.00 3.06
2563 9960 7.496529 AAACCGCTAGTATACTAATCACGTA 57.503 36.000 13.51 0.00 0.00 3.57
2564 9961 6.382869 AAACCGCTAGTATACTAATCACGT 57.617 37.500 13.51 3.68 0.00 4.49
2565 9962 8.232513 TGATAAACCGCTAGTATACTAATCACG 58.767 37.037 13.51 13.40 0.00 4.35
2566 9963 9.339492 GTGATAAACCGCTAGTATACTAATCAC 57.661 37.037 23.11 23.11 33.44 3.06
2567 9964 9.070179 TGTGATAAACCGCTAGTATACTAATCA 57.930 33.333 13.51 13.51 0.00 2.57
2568 9965 9.903682 TTGTGATAAACCGCTAGTATACTAATC 57.096 33.333 13.51 11.42 0.00 1.75
2574 9971 9.184062 CGTATTTTGTGATAAACCGCTAGTATA 57.816 33.333 0.00 0.00 0.00 1.47
2575 9972 7.707893 ACGTATTTTGTGATAAACCGCTAGTAT 59.292 33.333 0.00 0.00 0.00 2.12
2576 9973 7.009448 CACGTATTTTGTGATAAACCGCTAGTA 59.991 37.037 0.00 0.00 39.73 1.82
2577 9974 5.870978 ACGTATTTTGTGATAAACCGCTAGT 59.129 36.000 0.00 0.00 0.00 2.57
2578 9975 6.035220 TCACGTATTTTGTGATAAACCGCTAG 59.965 38.462 0.00 0.00 41.20 3.42
2579 9976 5.868258 TCACGTATTTTGTGATAAACCGCTA 59.132 36.000 0.00 0.00 41.20 4.26
2595 9992 6.070995 TCCTTCTGAACCACTAATCACGTATT 60.071 38.462 0.00 0.00 0.00 1.89
2687 10479 4.021807 TCAACAGCAGGACAAGTACGATTA 60.022 41.667 0.00 0.00 0.00 1.75
2700 10497 4.456911 ACACATGATAAACTCAACAGCAGG 59.543 41.667 0.00 0.00 37.44 4.85
2932 11031 2.093288 TCTGACTTCAGTGATGGGATGC 60.093 50.000 10.49 0.00 44.12 3.91
2970 11069 0.537188 ATGGTTCGCCTCGTCAGAAT 59.463 50.000 0.00 0.00 38.36 2.40
2998 11097 7.261325 CAATCACCGATCTAGATTCCGAATAT 58.739 38.462 13.76 0.00 30.04 1.28
3009 11108 3.056250 CCCATCTCCAATCACCGATCTAG 60.056 52.174 0.00 0.00 0.00 2.43
3098 11198 8.953368 AAGTTAAATAACTAACCCTACATCCG 57.047 34.615 6.27 0.00 45.17 4.18
3177 11280 3.072476 TGAAGGAGACGGTTTTCCTCATT 59.928 43.478 13.45 5.19 42.95 2.57
3186 11289 2.878406 CAACAACATGAAGGAGACGGTT 59.122 45.455 0.00 0.00 0.00 4.44
3229 11332 7.446001 AACTCAGAGTTCCATTGAAGATTTC 57.554 36.000 10.27 0.00 31.77 2.17
3279 11406 7.079451 AGAAAGAACAAGTATGGAGAAGGAA 57.921 36.000 0.00 0.00 0.00 3.36
3322 11483 8.493607 TGTAACCTGAATAGAATCATCATTCCA 58.506 33.333 0.00 0.00 39.58 3.53
3451 11630 3.733443 AATTTGAGTTCCTGCCAACAC 57.267 42.857 0.00 0.00 0.00 3.32
3652 11862 5.468072 CGCCTGAGAAGTTCATTAAGCATAT 59.532 40.000 5.50 0.00 34.68 1.78
3665 11875 1.333177 AGACAACTCGCCTGAGAAGT 58.667 50.000 0.00 0.00 45.57 3.01
3828 12071 4.134379 TGATTCTCTGCCATGTCTCTTC 57.866 45.455 0.00 0.00 0.00 2.87
3829 12072 4.019501 AGTTGATTCTCTGCCATGTCTCTT 60.020 41.667 0.00 0.00 0.00 2.85
3830 12073 3.518705 AGTTGATTCTCTGCCATGTCTCT 59.481 43.478 0.00 0.00 0.00 3.10
3833 12076 3.559242 GCTAGTTGATTCTCTGCCATGTC 59.441 47.826 0.00 0.00 0.00 3.06
4314 12600 2.113433 TAGACCGACGAGCTGGAGC 61.113 63.158 1.44 0.00 42.49 4.70
4330 12616 4.931601 CCACCATCATAACATGATCCGTAG 59.068 45.833 0.00 0.00 46.62 3.51
4331 12617 4.802583 GCCACCATCATAACATGATCCGTA 60.803 45.833 0.00 0.00 46.62 4.02
4494 12780 3.684990 AGCAGAAGGAGCACGCGA 61.685 61.111 15.93 0.00 0.00 5.87
4567 12898 4.602340 TTTCTCTGGGTAGTCTGTTGAC 57.398 45.455 0.00 0.00 43.22 3.18
4578 12909 1.707427 AGCAGGATGTTTTCTCTGGGT 59.293 47.619 0.00 0.00 39.31 4.51
4616 12982 1.306482 TCCTCTCTGGGAAGCCTGG 60.306 63.158 0.00 0.00 36.20 4.45
4673 13085 3.255642 GCAGCCCAACTCAACTTTAATCA 59.744 43.478 0.00 0.00 0.00 2.57
4722 13134 6.965866 TGGAGGATAATATGCCTACCACTAAT 59.034 38.462 0.00 0.00 33.98 1.73
4760 13172 2.681097 GCCTACCCCAACTTCATCACTC 60.681 54.545 0.00 0.00 0.00 3.51
4878 13382 7.377766 TGGCAATATAACAAGAAGTTCAGTC 57.622 36.000 5.50 0.00 41.64 3.51
4880 13384 6.094603 AGCTGGCAATATAACAAGAAGTTCAG 59.905 38.462 5.50 0.00 41.64 3.02
4892 13396 8.821817 TCTATTATACACCAGCTGGCAATATAA 58.178 33.333 33.06 30.21 39.32 0.98
4895 13399 6.680148 TCTATTATACACCAGCTGGCAATA 57.320 37.500 33.06 22.51 39.32 1.90
4900 13404 5.105146 GGGAGATCTATTATACACCAGCTGG 60.105 48.000 31.60 31.60 42.17 4.85
4901 13405 5.481824 TGGGAGATCTATTATACACCAGCTG 59.518 44.000 6.78 6.78 0.00 4.24
4902 13406 5.655394 TGGGAGATCTATTATACACCAGCT 58.345 41.667 0.00 0.00 0.00 4.24
4909 13413 9.323985 GATTTCTGCATGGGAGATCTATTATAC 57.676 37.037 0.00 0.00 0.00 1.47
5030 14007 1.348064 CTTACACCCCAGACTGGTCA 58.652 55.000 20.24 0.00 35.17 4.02
5031 14008 1.275573 GACTTACACCCCAGACTGGTC 59.724 57.143 20.24 4.83 35.17 4.02
5032 14009 1.132817 AGACTTACACCCCAGACTGGT 60.133 52.381 20.24 4.16 35.17 4.00
5033 14010 1.645710 AGACTTACACCCCAGACTGG 58.354 55.000 15.15 15.15 37.25 4.00
5034 14011 3.771577 AAAGACTTACACCCCAGACTG 57.228 47.619 0.00 0.00 0.00 3.51
5035 14012 4.461198 CAAAAAGACTTACACCCCAGACT 58.539 43.478 0.00 0.00 0.00 3.24
5036 14013 3.568430 CCAAAAAGACTTACACCCCAGAC 59.432 47.826 0.00 0.00 0.00 3.51
5037 14014 3.460340 TCCAAAAAGACTTACACCCCAGA 59.540 43.478 0.00 0.00 0.00 3.86
5038 14015 3.827722 TCCAAAAAGACTTACACCCCAG 58.172 45.455 0.00 0.00 0.00 4.45
5039 14016 3.955524 TCCAAAAAGACTTACACCCCA 57.044 42.857 0.00 0.00 0.00 4.96
5040 14017 6.904463 TTTATCCAAAAAGACTTACACCCC 57.096 37.500 0.00 0.00 0.00 4.95
5041 14018 7.892609 ACATTTATCCAAAAAGACTTACACCC 58.107 34.615 0.00 0.00 0.00 4.61
5069 14230 7.595130 CAGAGGGTTTTAAACTGCTAAAATGTC 59.405 37.037 7.79 0.00 34.26 3.06
5071 14232 7.433680 ACAGAGGGTTTTAAACTGCTAAAATG 58.566 34.615 7.79 0.39 34.26 2.32
5073 14234 7.412853 AACAGAGGGTTTTAAACTGCTAAAA 57.587 32.000 7.79 0.00 35.82 1.52
5090 14251 6.727824 ATGTCTTACATTTCGAAACAGAGG 57.272 37.500 13.81 4.37 34.67 3.69
5103 14264 8.637986 TCTTTAAACTGCCAAAATGTCTTACAT 58.362 29.630 0.00 0.00 41.31 2.29
5105 14266 8.865590 TTCTTTAAACTGCCAAAATGTCTTAC 57.134 30.769 0.00 0.00 0.00 2.34
5106 14267 9.308318 GTTTCTTTAAACTGCCAAAATGTCTTA 57.692 29.630 0.00 0.00 41.52 2.10
5109 14270 7.491048 TCTGTTTCTTTAAACTGCCAAAATGTC 59.509 33.333 3.01 0.00 44.44 3.06
5111 14272 7.042523 CCTCTGTTTCTTTAAACTGCCAAAATG 60.043 37.037 3.01 0.00 44.44 2.32
5112 14273 6.986231 CCTCTGTTTCTTTAAACTGCCAAAAT 59.014 34.615 3.01 0.00 44.44 1.82
5114 14275 5.420739 ACCTCTGTTTCTTTAAACTGCCAAA 59.579 36.000 3.01 0.00 44.44 3.28
5115 14276 4.953579 ACCTCTGTTTCTTTAAACTGCCAA 59.046 37.500 3.01 0.00 44.44 4.52
5117 14278 5.763698 ACTACCTCTGTTTCTTTAAACTGCC 59.236 40.000 3.01 0.00 44.44 4.85
5118 14279 6.862711 ACTACCTCTGTTTCTTTAAACTGC 57.137 37.500 3.01 0.00 44.44 4.40
5128 14289 8.828688 ACTTTGTAATGTACTACCTCTGTTTC 57.171 34.615 0.00 0.00 0.00 2.78
5130 14291 9.086758 ACTACTTTGTAATGTACTACCTCTGTT 57.913 33.333 0.00 0.00 0.00 3.16
5131 14292 8.647256 ACTACTTTGTAATGTACTACCTCTGT 57.353 34.615 0.00 0.00 0.00 3.41
5133 14294 9.183368 GGTACTACTTTGTAATGTACTACCTCT 57.817 37.037 13.31 0.00 35.29 3.69
5134 14295 8.125448 CGGTACTACTTTGTAATGTACTACCTC 58.875 40.741 15.83 0.00 35.29 3.85
5136 14297 7.196331 CCGGTACTACTTTGTAATGTACTACC 58.804 42.308 0.00 11.89 35.29 3.18
5137 14298 6.693113 GCCGGTACTACTTTGTAATGTACTAC 59.307 42.308 1.90 0.00 35.29 2.73
5140 14301 4.805719 GGCCGGTACTACTTTGTAATGTAC 59.194 45.833 1.90 0.00 34.48 2.90
5142 14303 3.261390 TGGCCGGTACTACTTTGTAATGT 59.739 43.478 1.90 0.00 0.00 2.71
5145 14306 2.234414 CCTGGCCGGTACTACTTTGTAA 59.766 50.000 11.58 0.00 0.00 2.41
5146 14307 1.826720 CCTGGCCGGTACTACTTTGTA 59.173 52.381 11.58 0.00 0.00 2.41
5148 14309 0.611714 ACCTGGCCGGTACTACTTTG 59.388 55.000 16.31 0.00 46.73 2.77
5149 14310 3.077914 ACCTGGCCGGTACTACTTT 57.922 52.632 16.31 0.00 46.73 2.66
5158 14319 1.178534 AATCACAACAACCTGGCCGG 61.179 55.000 3.88 3.88 39.35 6.13
5159 14320 0.240945 GAATCACAACAACCTGGCCG 59.759 55.000 0.00 0.00 0.00 6.13
5160 14321 1.327303 TGAATCACAACAACCTGGCC 58.673 50.000 0.00 0.00 0.00 5.36
5161 14322 3.123050 GTTTGAATCACAACAACCTGGC 58.877 45.455 0.00 0.00 38.29 4.85
5162 14323 4.362279 CTGTTTGAATCACAACAACCTGG 58.638 43.478 10.48 0.00 38.29 4.45
5163 14324 3.798337 GCTGTTTGAATCACAACAACCTG 59.202 43.478 10.48 3.44 38.29 4.00
5164 14325 3.701040 AGCTGTTTGAATCACAACAACCT 59.299 39.130 10.48 7.98 38.29 3.50
5165 14326 4.045636 AGCTGTTTGAATCACAACAACC 57.954 40.909 10.48 6.53 38.29 3.77
5166 14327 5.004726 GTGAAGCTGTTTGAATCACAACAAC 59.995 40.000 7.43 7.54 40.02 3.32
5167 14328 5.101628 GTGAAGCTGTTTGAATCACAACAA 58.898 37.500 7.43 0.00 40.02 2.83
5168 14329 4.157472 TGTGAAGCTGTTTGAATCACAACA 59.843 37.500 11.70 9.42 45.17 3.33
5169 14330 4.671377 TGTGAAGCTGTTTGAATCACAAC 58.329 39.130 11.70 0.00 45.17 3.32
5170 14331 4.979943 TGTGAAGCTGTTTGAATCACAA 57.020 36.364 11.70 0.00 45.17 3.33
5171 14332 4.979943 TTGTGAAGCTGTTTGAATCACA 57.020 36.364 10.36 10.36 46.12 3.58
5172 14333 5.878261 CTTTGTGAAGCTGTTTGAATCAC 57.122 39.130 5.66 5.66 40.53 3.06
5185 14346 0.825010 ACCCTGCCTGCTTTGTGAAG 60.825 55.000 0.00 0.00 35.92 3.02
5187 14348 0.476338 TTACCCTGCCTGCTTTGTGA 59.524 50.000 0.00 0.00 0.00 3.58
5188 14349 1.549203 ATTACCCTGCCTGCTTTGTG 58.451 50.000 0.00 0.00 0.00 3.33
5190 14351 3.554934 TCATATTACCCTGCCTGCTTTG 58.445 45.455 0.00 0.00 0.00 2.77
5194 14355 2.938956 ACTCATATTACCCTGCCTGC 57.061 50.000 0.00 0.00 0.00 4.85
5195 14356 7.227156 AGAATTTACTCATATTACCCTGCCTG 58.773 38.462 0.00 0.00 0.00 4.85
5196 14357 7.394144 AGAATTTACTCATATTACCCTGCCT 57.606 36.000 0.00 0.00 0.00 4.75
5197 14358 6.655425 GGAGAATTTACTCATATTACCCTGCC 59.345 42.308 0.00 0.00 38.51 4.85
5198 14359 6.369065 CGGAGAATTTACTCATATTACCCTGC 59.631 42.308 0.00 0.00 38.51 4.85
5199 14360 7.667557 TCGGAGAATTTACTCATATTACCCTG 58.332 38.462 0.00 0.00 38.51 4.45
5200 14361 7.850935 TCGGAGAATTTACTCATATTACCCT 57.149 36.000 0.00 0.00 38.51 4.34
5208 14369 7.414540 GCAACTGATTTCGGAGAATTTACTCAT 60.415 37.037 0.00 0.00 45.90 2.90
5210 14371 6.251549 GCAACTGATTTCGGAGAATTTACTC 58.748 40.000 0.00 0.00 45.90 2.59
5213 14374 4.693566 ACGCAACTGATTTCGGAGAATTTA 59.306 37.500 0.00 0.00 45.90 1.40
5219 14380 1.725931 GCAACGCAACTGATTTCGGAG 60.726 52.381 0.00 0.00 0.00 4.63
5221 14382 0.729140 GGCAACGCAACTGATTTCGG 60.729 55.000 0.00 0.00 0.00 4.30
5222 14383 0.040514 TGGCAACGCAACTGATTTCG 60.041 50.000 0.00 0.00 42.51 3.46
5223 14384 1.266718 TCTGGCAACGCAACTGATTTC 59.733 47.619 0.00 0.00 42.51 2.17
5224 14385 1.267806 CTCTGGCAACGCAACTGATTT 59.732 47.619 0.00 0.00 42.51 2.17
5225 14386 0.877071 CTCTGGCAACGCAACTGATT 59.123 50.000 0.00 0.00 42.51 2.57
5226 14387 0.035317 TCTCTGGCAACGCAACTGAT 59.965 50.000 0.00 0.00 42.51 2.90
5228 14389 1.571460 GTCTCTGGCAACGCAACTG 59.429 57.895 0.00 0.00 42.51 3.16
5229 14390 1.956170 CGTCTCTGGCAACGCAACT 60.956 57.895 0.00 0.00 42.51 3.16
5230 14391 2.551270 CGTCTCTGGCAACGCAAC 59.449 61.111 0.00 0.00 42.51 4.17
5240 14401 1.875813 GTGATCGCCTGCGTCTCTG 60.876 63.158 11.68 0.00 40.74 3.35
5246 14407 1.699656 CTTGGAAGTGATCGCCTGCG 61.700 60.000 4.92 4.92 41.35 5.18
5274 14435 1.289109 TGCTTTCGTTCGCTGCCTAC 61.289 55.000 0.00 0.00 0.00 3.18
5288 14449 0.108585 TCGCTCTTCTGGGTTGCTTT 59.891 50.000 0.00 0.00 0.00 3.51
5337 14593 1.615883 CGAGATGAGGTCACCCCATAG 59.384 57.143 0.00 0.00 34.66 2.23
5384 14640 1.418755 GGGCTCGCTCGTAAAAACG 59.581 57.895 0.00 0.00 0.00 3.60
5414 14672 1.383799 CCAGTGAAGGCAATCCCCA 59.616 57.895 0.00 0.00 0.00 4.96
5465 14723 2.236893 CCCATCCAAATCAAACCCAAGG 59.763 50.000 0.00 0.00 0.00 3.61
5564 16192 0.323451 GGAAACCCATCCCACCACTC 60.323 60.000 0.00 0.00 33.05 3.51
5565 16193 0.776080 AGGAAACCCATCCCACCACT 60.776 55.000 0.00 0.00 40.59 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.