Multiple sequence alignment - TraesCS6D01G063800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G063800 chr6D 100.000 2402 0 0 1 2402 30072050 30074451 0.000000e+00 4436.0
1 TraesCS6D01G063800 chr6D 80.804 224 32 3 1129 1342 436404788 436404566 5.310000e-37 165.0
2 TraesCS6D01G063800 chr6B 88.518 1559 92 34 745 2235 57458508 57456969 0.000000e+00 1807.0
3 TraesCS6D01G063800 chr6B 90.000 240 22 2 1 238 57545639 57545400 2.320000e-80 309.0
4 TraesCS6D01G063800 chr6B 90.052 191 10 4 235 420 57545272 57545086 3.090000e-59 239.0
5 TraesCS6D01G063800 chr2D 81.099 619 62 19 782 1346 585636326 585636943 6.090000e-121 444.0
6 TraesCS6D01G063800 chr2D 77.742 629 70 33 782 1346 585519754 585520376 2.980000e-84 322.0
7 TraesCS6D01G063800 chr2D 78.680 394 44 17 1395 1757 585520500 585520884 2.400000e-55 226.0
8 TraesCS6D01G063800 chr2D 78.210 257 35 10 1395 1640 585637073 585637319 6.920000e-31 145.0
9 TraesCS6D01G063800 chr2D 85.401 137 15 3 1504 1640 585637373 585637504 1.160000e-28 137.0
10 TraesCS6D01G063800 chr7A 92.013 313 24 1 416 727 712364647 712364335 2.830000e-119 438.0
11 TraesCS6D01G063800 chr7A 87.059 85 11 0 1822 1906 699805434 699805350 1.970000e-16 97.1
12 TraesCS6D01G063800 chr7A 97.368 38 1 0 1859 1896 608920968 608921005 5.540000e-07 65.8
13 TraesCS6D01G063800 chr1D 91.883 308 23 2 418 725 402296327 402296632 1.710000e-116 429.0
14 TraesCS6D01G063800 chr1D 90.415 313 27 2 415 725 348801094 348801405 2.220000e-110 409.0
15 TraesCS6D01G063800 chr5B 91.111 315 27 1 416 729 398159498 398159812 2.210000e-115 425.0
16 TraesCS6D01G063800 chr4D 91.111 315 24 4 416 728 97490686 97490374 7.940000e-115 424.0
17 TraesCS6D01G063800 chr4D 90.476 315 27 3 416 728 36351754 36351441 1.720000e-111 412.0
18 TraesCS6D01G063800 chr3D 90.566 318 29 1 416 732 606080241 606080558 1.030000e-113 420.0
19 TraesCS6D01G063800 chr2B 91.262 309 26 1 418 725 105846617 105846925 1.030000e-113 420.0
20 TraesCS6D01G063800 chr2B 79.775 623 66 24 783 1346 706699066 706699687 4.810000e-107 398.0
21 TraesCS6D01G063800 chr2B 79.393 626 72 19 777 1346 706567687 706568311 2.900000e-104 388.0
22 TraesCS6D01G063800 chr2B 80.220 273 35 13 1504 1770 706568565 706568824 1.130000e-43 187.0
23 TraesCS6D01G063800 chr2B 82.857 175 13 10 1504 1673 706700004 706700166 8.950000e-30 141.0
24 TraesCS6D01G063800 chr7D 90.735 313 28 1 417 728 45592964 45592652 1.330000e-112 416.0
25 TraesCS6D01G063800 chr2A 81.919 271 32 9 1504 1770 719566761 719567018 1.870000e-51 213.0
26 TraesCS6D01G063800 chr2A 77.608 393 59 13 1393 1770 719626788 719627166 6.730000e-51 211.0
27 TraesCS6D01G063800 chr2A 83.243 185 14 8 782 949 719565423 719565607 1.150000e-33 154.0
28 TraesCS6D01G063800 chr2A 76.821 302 40 9 1395 1673 719686665 719686959 2.490000e-30 143.0
29 TraesCS6D01G063800 chr2A 80.105 191 14 7 783 949 719685894 719686084 1.170000e-23 121.0
30 TraesCS6D01G063800 chr4A 89.796 49 5 0 1858 1906 562407842 562407890 1.990000e-06 63.9
31 TraesCS6D01G063800 chr4B 89.583 48 5 0 1822 1869 667611386 667611339 7.170000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G063800 chr6D 30072050 30074451 2401 False 4436.0 4436 100.0000 1 2402 1 chr6D.!!$F1 2401
1 TraesCS6D01G063800 chr6B 57456969 57458508 1539 True 1807.0 1807 88.5180 745 2235 1 chr6B.!!$R1 1490
2 TraesCS6D01G063800 chr6B 57545086 57545639 553 True 274.0 309 90.0260 1 420 2 chr6B.!!$R2 419
3 TraesCS6D01G063800 chr2D 585519754 585520884 1130 False 274.0 322 78.2110 782 1757 2 chr2D.!!$F1 975
4 TraesCS6D01G063800 chr2D 585636326 585637504 1178 False 242.0 444 81.5700 782 1640 3 chr2D.!!$F2 858
5 TraesCS6D01G063800 chr2B 706567687 706568824 1137 False 287.5 388 79.8065 777 1770 2 chr2B.!!$F2 993
6 TraesCS6D01G063800 chr2B 706699066 706700166 1100 False 269.5 398 81.3160 783 1673 2 chr2B.!!$F3 890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 559 0.167908 TTGCGCGCAACCAATTAGAG 59.832 50.0 40.23 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 2713 0.327924 TGGCTCACCCAACCACTATG 59.672 55.0 0.0 0.0 41.82 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.399219 AGCTTCCAGAACCTTCCTAAAAC 58.601 43.478 0.00 0.00 0.00 2.43
46 48 2.742589 CAGAACCTTCCTAAAACGCTCC 59.257 50.000 0.00 0.00 0.00 4.70
59 61 2.309528 ACGCTCCATGAAAATCGCTA 57.690 45.000 0.00 0.00 0.00 4.26
64 66 4.376413 CGCTCCATGAAAATCGCTATGTAC 60.376 45.833 0.00 0.00 0.00 2.90
69 71 4.850859 TGAAAATCGCTATGTACAACCG 57.149 40.909 0.00 3.16 0.00 4.44
86 89 4.785453 GCTCCAGGAAGCACCCGG 62.785 72.222 0.00 0.00 42.05 5.73
106 109 1.518572 AGCGTCGCTTGATTACCCG 60.519 57.895 15.47 0.00 33.89 5.28
118 121 1.702022 ATTACCCGGCCCATTAGCGT 61.702 55.000 0.00 0.00 0.00 5.07
167 170 2.048127 GAGCGGACGGCCCATATC 60.048 66.667 0.00 0.00 45.17 1.63
173 176 1.371558 GACGGCCCATATCACTCCC 59.628 63.158 0.00 0.00 0.00 4.30
184 187 1.874129 ATCACTCCCGTATCCCAACA 58.126 50.000 0.00 0.00 0.00 3.33
194 197 3.067106 CGTATCCCAACAGCATCCATAC 58.933 50.000 0.00 0.00 0.00 2.39
205 208 6.017400 ACAGCATCCATACAAGAAAAACAG 57.983 37.500 0.00 0.00 0.00 3.16
211 214 6.978343 TCCATACAAGAAAAACAGTATCCG 57.022 37.500 0.00 0.00 0.00 4.18
214 217 6.183360 CCATACAAGAAAAACAGTATCCGACC 60.183 42.308 0.00 0.00 0.00 4.79
221 224 1.830279 ACAGTATCCGACCGACAAGA 58.170 50.000 0.00 0.00 0.00 3.02
278 412 8.681486 TCATGAACCGAGAATCATCAATAATT 57.319 30.769 0.00 0.00 34.12 1.40
285 419 6.357980 CGAGAATCATCAATAATTCCACACG 58.642 40.000 0.00 0.00 33.29 4.49
336 470 2.351276 CCCCTTCCTTGGACCACG 59.649 66.667 0.00 0.00 0.00 4.94
379 516 3.052082 CTGGTCCACAAGGCGCAG 61.052 66.667 10.83 0.00 33.74 5.18
420 559 0.167908 TTGCGCGCAACCAATTAGAG 59.832 50.000 40.23 0.00 0.00 2.43
421 560 1.583709 GCGCGCAACCAATTAGAGC 60.584 57.895 29.10 0.00 0.00 4.09
422 561 1.793581 CGCGCAACCAATTAGAGCA 59.206 52.632 8.75 0.00 0.00 4.26
423 562 0.378257 CGCGCAACCAATTAGAGCAT 59.622 50.000 8.75 0.00 0.00 3.79
424 563 1.595489 CGCGCAACCAATTAGAGCATC 60.595 52.381 8.75 0.00 0.00 3.91
436 575 1.790387 GAGCATCTCCAACACACGC 59.210 57.895 0.00 0.00 0.00 5.34
437 576 0.671781 GAGCATCTCCAACACACGCT 60.672 55.000 0.00 0.00 0.00 5.07
438 577 0.671781 AGCATCTCCAACACACGCTC 60.672 55.000 0.00 0.00 0.00 5.03
439 578 0.950555 GCATCTCCAACACACGCTCA 60.951 55.000 0.00 0.00 0.00 4.26
440 579 1.511850 CATCTCCAACACACGCTCAA 58.488 50.000 0.00 0.00 0.00 3.02
441 580 1.872952 CATCTCCAACACACGCTCAAA 59.127 47.619 0.00 0.00 0.00 2.69
442 581 2.031258 TCTCCAACACACGCTCAAAA 57.969 45.000 0.00 0.00 0.00 2.44
443 582 2.360844 TCTCCAACACACGCTCAAAAA 58.639 42.857 0.00 0.00 0.00 1.94
460 599 2.715737 AAAAAGCTCCGCGCATTAAA 57.284 40.000 8.75 0.00 42.61 1.52
461 600 2.715737 AAAAGCTCCGCGCATTAAAA 57.284 40.000 8.75 0.00 42.61 1.52
462 601 2.715737 AAAGCTCCGCGCATTAAAAA 57.284 40.000 8.75 0.00 42.61 1.94
463 602 2.939460 AAGCTCCGCGCATTAAAAAT 57.061 40.000 8.75 0.00 42.61 1.82
464 603 2.939460 AGCTCCGCGCATTAAAAATT 57.061 40.000 8.75 0.00 42.61 1.82
465 604 3.230743 AGCTCCGCGCATTAAAAATTT 57.769 38.095 8.75 0.00 42.61 1.82
466 605 2.923020 AGCTCCGCGCATTAAAAATTTG 59.077 40.909 8.75 0.00 42.61 2.32
467 606 2.666022 GCTCCGCGCATTAAAAATTTGT 59.334 40.909 8.75 0.00 38.92 2.83
468 607 3.122780 GCTCCGCGCATTAAAAATTTGTT 59.877 39.130 8.75 0.00 38.92 2.83
469 608 4.376920 GCTCCGCGCATTAAAAATTTGTTT 60.377 37.500 8.75 0.00 38.92 2.83
470 609 5.659048 TCCGCGCATTAAAAATTTGTTTT 57.341 30.435 8.75 0.00 0.00 2.43
471 610 6.049263 TCCGCGCATTAAAAATTTGTTTTT 57.951 29.167 8.75 4.55 39.22 1.94
488 627 3.936585 TTTTTGTGCCGAACAGCTC 57.063 47.368 0.00 0.00 40.74 4.09
489 628 0.383949 TTTTTGTGCCGAACAGCTCC 59.616 50.000 0.00 0.00 40.74 4.70
490 629 0.749818 TTTTGTGCCGAACAGCTCCA 60.750 50.000 0.00 0.00 40.74 3.86
491 630 1.165907 TTTGTGCCGAACAGCTCCAG 61.166 55.000 0.00 0.00 40.74 3.86
492 631 3.426568 GTGCCGAACAGCTCCAGC 61.427 66.667 0.00 0.00 42.49 4.85
493 632 3.939939 TGCCGAACAGCTCCAGCA 61.940 61.111 0.48 0.00 45.16 4.41
494 633 3.123620 GCCGAACAGCTCCAGCAG 61.124 66.667 0.48 0.00 45.16 4.24
495 634 2.659016 CCGAACAGCTCCAGCAGA 59.341 61.111 0.48 0.00 45.16 4.26
496 635 1.220206 CCGAACAGCTCCAGCAGAT 59.780 57.895 0.48 0.00 45.16 2.90
497 636 1.088340 CCGAACAGCTCCAGCAGATG 61.088 60.000 0.48 0.00 44.80 2.90
498 637 1.703438 CGAACAGCTCCAGCAGATGC 61.703 60.000 0.48 0.00 42.85 3.91
508 647 4.738198 GCAGATGCTGTAGCGCTA 57.262 55.556 14.45 14.45 45.83 4.26
509 648 2.977700 GCAGATGCTGTAGCGCTAA 58.022 52.632 20.73 3.40 45.83 3.09
510 649 1.290203 GCAGATGCTGTAGCGCTAAA 58.710 50.000 20.73 13.83 45.83 1.85
511 650 1.665679 GCAGATGCTGTAGCGCTAAAA 59.334 47.619 20.73 9.85 45.83 1.52
512 651 2.286067 GCAGATGCTGTAGCGCTAAAAG 60.286 50.000 20.73 19.88 45.83 2.27
513 652 2.932614 CAGATGCTGTAGCGCTAAAAGT 59.067 45.455 20.73 5.03 45.83 2.66
514 653 3.372206 CAGATGCTGTAGCGCTAAAAGTT 59.628 43.478 20.73 11.36 45.83 2.66
515 654 4.003648 AGATGCTGTAGCGCTAAAAGTTT 58.996 39.130 20.73 11.03 45.83 2.66
516 655 4.455877 AGATGCTGTAGCGCTAAAAGTTTT 59.544 37.500 20.73 6.06 45.83 2.43
517 656 5.642063 AGATGCTGTAGCGCTAAAAGTTTTA 59.358 36.000 20.73 7.80 45.83 1.52
518 657 5.277601 TGCTGTAGCGCTAAAAGTTTTAG 57.722 39.130 24.95 24.95 45.83 1.85
519 658 4.153475 TGCTGTAGCGCTAAAAGTTTTAGG 59.847 41.667 28.29 21.02 45.83 2.69
520 659 4.436986 GCTGTAGCGCTAAAAGTTTTAGGG 60.437 45.833 32.53 32.53 37.81 3.53
522 661 1.891178 GCGCTAAAAGTTTTAGGGCG 58.109 50.000 39.13 32.58 46.06 6.13
523 662 1.891178 CGCTAAAAGTTTTAGGGCGC 58.109 50.000 28.81 18.35 35.13 6.53
524 663 1.789054 CGCTAAAAGTTTTAGGGCGCG 60.789 52.381 28.81 23.86 35.13 6.86
525 664 1.198408 GCTAAAAGTTTTAGGGCGCGT 59.802 47.619 28.29 0.00 0.00 6.01
526 665 2.846693 CTAAAAGTTTTAGGGCGCGTG 58.153 47.619 22.58 0.00 0.00 5.34
527 666 0.318360 AAAAGTTTTAGGGCGCGTGC 60.318 50.000 13.78 13.78 41.71 5.34
528 667 1.170290 AAAGTTTTAGGGCGCGTGCT 61.170 50.000 21.89 4.17 42.25 4.40
529 668 1.852067 AAGTTTTAGGGCGCGTGCTG 61.852 55.000 21.89 0.00 42.25 4.41
530 669 2.031314 TTTTAGGGCGCGTGCTGA 59.969 55.556 21.89 3.26 42.25 4.26
531 670 1.598407 TTTTAGGGCGCGTGCTGAA 60.598 52.632 21.89 9.60 42.25 3.02
532 671 1.167155 TTTTAGGGCGCGTGCTGAAA 61.167 50.000 21.89 14.88 42.25 2.69
533 672 1.167155 TTTAGGGCGCGTGCTGAAAA 61.167 50.000 21.89 14.69 42.25 2.29
534 673 1.167155 TTAGGGCGCGTGCTGAAAAA 61.167 50.000 21.89 5.85 42.25 1.94
535 674 1.847890 TAGGGCGCGTGCTGAAAAAC 61.848 55.000 21.89 1.35 42.25 2.43
536 675 3.091022 GGCGCGTGCTGAAAAACG 61.091 61.111 21.89 0.00 42.25 3.60
542 681 1.785881 CGTGCTGAAAAACGCTATCG 58.214 50.000 0.00 0.00 42.43 2.92
543 682 1.524548 GTGCTGAAAAACGCTATCGC 58.475 50.000 0.00 0.00 39.84 4.58
569 708 3.715628 GCATATTTTGTGCTCCGGATT 57.284 42.857 3.57 0.00 39.45 3.01
570 709 3.374745 GCATATTTTGTGCTCCGGATTG 58.625 45.455 3.57 0.00 39.45 2.67
571 710 3.374745 CATATTTTGTGCTCCGGATTGC 58.625 45.455 3.57 6.69 0.00 3.56
572 711 0.171007 ATTTTGTGCTCCGGATTGCG 59.829 50.000 3.57 0.00 0.00 4.85
573 712 2.470801 TTTTGTGCTCCGGATTGCGC 62.471 55.000 19.38 19.38 39.80 6.09
587 726 4.285291 GCGCGCGCTTCATAATTT 57.715 50.000 44.38 0.00 38.26 1.82
588 727 1.832913 GCGCGCGCTTCATAATTTG 59.167 52.632 44.38 10.35 38.26 2.32
589 728 1.832913 CGCGCGCTTCATAATTTGC 59.167 52.632 30.48 0.00 0.00 3.68
590 729 0.861034 CGCGCGCTTCATAATTTGCA 60.861 50.000 30.48 0.00 0.00 4.08
591 730 0.567509 GCGCGCTTCATAATTTGCAC 59.432 50.000 26.67 0.00 0.00 4.57
592 731 1.795162 GCGCGCTTCATAATTTGCACT 60.795 47.619 26.67 0.00 0.00 4.40
593 732 1.841944 CGCGCTTCATAATTTGCACTG 59.158 47.619 5.56 0.00 0.00 3.66
594 733 2.728846 CGCGCTTCATAATTTGCACTGT 60.729 45.455 5.56 0.00 0.00 3.55
595 734 2.848302 GCGCTTCATAATTTGCACTGTC 59.152 45.455 0.00 0.00 0.00 3.51
596 735 3.426695 GCGCTTCATAATTTGCACTGTCT 60.427 43.478 0.00 0.00 0.00 3.41
597 736 4.093514 CGCTTCATAATTTGCACTGTCTG 58.906 43.478 0.00 0.00 0.00 3.51
606 745 3.575399 GCACTGTCTGCTTTTTGGG 57.425 52.632 0.00 0.00 43.33 4.12
607 746 0.746659 GCACTGTCTGCTTTTTGGGT 59.253 50.000 0.00 0.00 43.33 4.51
608 747 1.536709 GCACTGTCTGCTTTTTGGGTG 60.537 52.381 0.00 0.00 43.33 4.61
609 748 0.746659 ACTGTCTGCTTTTTGGGTGC 59.253 50.000 0.00 0.00 0.00 5.01
610 749 0.318107 CTGTCTGCTTTTTGGGTGCG 60.318 55.000 0.00 0.00 0.00 5.34
611 750 1.661509 GTCTGCTTTTTGGGTGCGC 60.662 57.895 0.00 0.00 0.00 6.09
612 751 2.730604 CTGCTTTTTGGGTGCGCG 60.731 61.111 0.00 0.00 0.00 6.86
613 752 3.483235 CTGCTTTTTGGGTGCGCGT 62.483 57.895 8.43 0.00 0.00 6.01
614 753 2.279186 GCTTTTTGGGTGCGCGTT 60.279 55.556 8.43 0.00 0.00 4.84
615 754 1.880796 GCTTTTTGGGTGCGCGTTT 60.881 52.632 8.43 0.00 0.00 3.60
616 755 1.425267 GCTTTTTGGGTGCGCGTTTT 61.425 50.000 8.43 0.00 0.00 2.43
617 756 1.003108 CTTTTTGGGTGCGCGTTTTT 58.997 45.000 8.43 0.00 0.00 1.94
618 757 0.721718 TTTTTGGGTGCGCGTTTTTG 59.278 45.000 8.43 0.00 0.00 2.44
619 758 1.084370 TTTTGGGTGCGCGTTTTTGG 61.084 50.000 8.43 0.00 0.00 3.28
620 759 2.907897 TTTGGGTGCGCGTTTTTGGG 62.908 55.000 8.43 0.00 0.00 4.12
625 764 2.258286 GCGCGTTTTTGGGCATCT 59.742 55.556 8.43 0.00 46.11 2.90
626 765 2.088178 GCGCGTTTTTGGGCATCTG 61.088 57.895 8.43 0.00 46.11 2.90
627 766 1.285641 CGCGTTTTTGGGCATCTGT 59.714 52.632 0.00 0.00 0.00 3.41
628 767 0.318614 CGCGTTTTTGGGCATCTGTT 60.319 50.000 0.00 0.00 0.00 3.16
629 768 1.068885 CGCGTTTTTGGGCATCTGTTA 60.069 47.619 0.00 0.00 0.00 2.41
630 769 2.605823 CGCGTTTTTGGGCATCTGTTAA 60.606 45.455 0.00 0.00 0.00 2.01
631 770 3.385577 GCGTTTTTGGGCATCTGTTAAA 58.614 40.909 0.00 0.00 0.00 1.52
632 771 3.428534 GCGTTTTTGGGCATCTGTTAAAG 59.571 43.478 0.00 0.00 0.00 1.85
633 772 3.428534 CGTTTTTGGGCATCTGTTAAAGC 59.571 43.478 0.00 0.00 0.00 3.51
634 773 4.376146 GTTTTTGGGCATCTGTTAAAGCA 58.624 39.130 0.00 0.00 0.00 3.91
635 774 4.679373 TTTTGGGCATCTGTTAAAGCAA 57.321 36.364 0.00 0.00 0.00 3.91
636 775 4.888326 TTTGGGCATCTGTTAAAGCAAT 57.112 36.364 0.00 0.00 0.00 3.56
637 776 3.872511 TGGGCATCTGTTAAAGCAATG 57.127 42.857 0.00 0.00 0.00 2.82
638 777 3.164268 TGGGCATCTGTTAAAGCAATGT 58.836 40.909 0.00 0.00 0.00 2.71
639 778 3.577848 TGGGCATCTGTTAAAGCAATGTT 59.422 39.130 0.00 0.00 0.00 2.71
640 779 3.928375 GGGCATCTGTTAAAGCAATGTTG 59.072 43.478 0.00 0.00 0.00 3.33
641 780 3.928375 GGCATCTGTTAAAGCAATGTTGG 59.072 43.478 0.00 0.00 0.00 3.77
642 781 4.559153 GCATCTGTTAAAGCAATGTTGGT 58.441 39.130 0.00 0.00 41.27 3.67
643 782 4.622740 GCATCTGTTAAAGCAATGTTGGTC 59.377 41.667 0.00 0.00 38.04 4.02
644 783 4.846779 TCTGTTAAAGCAATGTTGGTCC 57.153 40.909 0.00 0.00 38.04 4.46
645 784 3.572255 TCTGTTAAAGCAATGTTGGTCCC 59.428 43.478 0.00 0.00 38.04 4.46
646 785 2.294791 TGTTAAAGCAATGTTGGTCCCG 59.705 45.455 0.00 0.00 38.04 5.14
647 786 1.540267 TAAAGCAATGTTGGTCCCGG 58.460 50.000 0.00 0.00 38.04 5.73
648 787 1.815817 AAAGCAATGTTGGTCCCGGC 61.816 55.000 0.00 0.00 38.04 6.13
649 788 4.114997 GCAATGTTGGTCCCGGCG 62.115 66.667 0.00 0.00 0.00 6.46
650 789 4.114997 CAATGTTGGTCCCGGCGC 62.115 66.667 0.00 0.00 0.00 6.53
651 790 4.652131 AATGTTGGTCCCGGCGCA 62.652 61.111 10.83 0.00 0.00 6.09
652 791 3.936772 AATGTTGGTCCCGGCGCAT 62.937 57.895 10.83 0.00 0.00 4.73
653 792 3.936772 ATGTTGGTCCCGGCGCATT 62.937 57.895 10.83 0.00 0.00 3.56
654 793 2.437002 GTTGGTCCCGGCGCATTA 60.437 61.111 10.83 0.00 0.00 1.90
655 794 2.041686 GTTGGTCCCGGCGCATTAA 61.042 57.895 10.83 0.00 0.00 1.40
656 795 1.303398 TTGGTCCCGGCGCATTAAA 60.303 52.632 10.83 0.00 0.00 1.52
657 796 0.894184 TTGGTCCCGGCGCATTAAAA 60.894 50.000 10.83 0.00 0.00 1.52
658 797 1.309499 TGGTCCCGGCGCATTAAAAG 61.309 55.000 10.83 0.00 0.00 2.27
659 798 1.310216 GGTCCCGGCGCATTAAAAGT 61.310 55.000 10.83 0.00 0.00 2.66
660 799 0.179174 GTCCCGGCGCATTAAAAGTG 60.179 55.000 10.83 0.00 0.00 3.16
661 800 1.516169 CCCGGCGCATTAAAAGTGC 60.516 57.895 10.83 7.95 41.56 4.40
662 801 1.506262 CCGGCGCATTAAAAGTGCT 59.494 52.632 10.83 0.00 41.94 4.40
663 802 0.730265 CCGGCGCATTAAAAGTGCTA 59.270 50.000 10.83 0.00 41.94 3.49
664 803 1.531058 CCGGCGCATTAAAAGTGCTAC 60.531 52.381 10.83 0.52 41.94 3.58
665 804 1.129624 CGGCGCATTAAAAGTGCTACA 59.870 47.619 10.83 0.00 41.94 2.74
666 805 2.785679 GGCGCATTAAAAGTGCTACAG 58.214 47.619 10.83 0.00 41.94 2.74
667 806 2.161609 GGCGCATTAAAAGTGCTACAGT 59.838 45.455 10.83 0.00 41.94 3.55
668 807 3.163594 GCGCATTAAAAGTGCTACAGTG 58.836 45.455 0.30 0.00 40.37 3.66
669 808 3.120338 GCGCATTAAAAGTGCTACAGTGA 60.120 43.478 0.30 0.00 40.37 3.41
670 809 4.394795 CGCATTAAAAGTGCTACAGTGAC 58.605 43.478 0.00 0.00 40.37 3.67
671 810 4.394795 GCATTAAAAGTGCTACAGTGACG 58.605 43.478 0.00 0.00 39.45 4.35
672 811 4.084013 GCATTAAAAGTGCTACAGTGACGT 60.084 41.667 0.00 0.00 39.45 4.34
673 812 5.560183 GCATTAAAAGTGCTACAGTGACGTT 60.560 40.000 0.00 0.00 39.45 3.99
674 813 3.944422 AAAAGTGCTACAGTGACGTTG 57.056 42.857 0.00 0.00 0.00 4.10
675 814 2.596904 AAGTGCTACAGTGACGTTGT 57.403 45.000 0.00 0.00 0.00 3.32
676 815 3.720949 AAGTGCTACAGTGACGTTGTA 57.279 42.857 0.00 0.00 0.00 2.41
677 816 3.720949 AGTGCTACAGTGACGTTGTAA 57.279 42.857 0.00 0.00 31.17 2.41
678 817 4.049546 AGTGCTACAGTGACGTTGTAAA 57.950 40.909 0.00 0.00 31.17 2.01
679 818 4.435425 AGTGCTACAGTGACGTTGTAAAA 58.565 39.130 0.00 0.00 31.17 1.52
680 819 4.269363 AGTGCTACAGTGACGTTGTAAAAC 59.731 41.667 0.00 0.00 31.17 2.43
681 820 4.269363 GTGCTACAGTGACGTTGTAAAACT 59.731 41.667 0.00 0.00 31.17 2.66
682 821 4.871557 TGCTACAGTGACGTTGTAAAACTT 59.128 37.500 0.00 0.00 31.17 2.66
683 822 5.352016 TGCTACAGTGACGTTGTAAAACTTT 59.648 36.000 0.00 0.00 31.17 2.66
684 823 6.128227 TGCTACAGTGACGTTGTAAAACTTTT 60.128 34.615 0.00 0.00 31.17 2.27
685 824 7.064371 TGCTACAGTGACGTTGTAAAACTTTTA 59.936 33.333 0.00 0.00 31.17 1.52
686 825 8.066000 GCTACAGTGACGTTGTAAAACTTTTAT 58.934 33.333 0.00 0.00 31.17 1.40
687 826 9.925268 CTACAGTGACGTTGTAAAACTTTTATT 57.075 29.630 0.00 0.00 31.17 1.40
688 827 8.609478 ACAGTGACGTTGTAAAACTTTTATTG 57.391 30.769 0.00 0.00 0.00 1.90
689 828 7.698970 ACAGTGACGTTGTAAAACTTTTATTGG 59.301 33.333 0.00 0.00 0.00 3.16
690 829 7.166804 CAGTGACGTTGTAAAACTTTTATTGGG 59.833 37.037 0.00 0.00 0.00 4.12
691 830 5.978322 TGACGTTGTAAAACTTTTATTGGGC 59.022 36.000 0.00 0.00 0.00 5.36
692 831 4.977347 ACGTTGTAAAACTTTTATTGGGCG 59.023 37.500 0.00 2.66 0.00 6.13
693 832 4.143494 CGTTGTAAAACTTTTATTGGGCGC 60.143 41.667 0.00 0.00 0.00 6.53
694 833 3.566523 TGTAAAACTTTTATTGGGCGCG 58.433 40.909 0.00 0.00 0.00 6.86
695 834 3.252701 TGTAAAACTTTTATTGGGCGCGA 59.747 39.130 12.10 0.00 0.00 5.87
696 835 3.372660 AAAACTTTTATTGGGCGCGAA 57.627 38.095 12.10 0.00 0.00 4.70
697 836 3.372660 AAACTTTTATTGGGCGCGAAA 57.627 38.095 12.10 0.00 0.00 3.46
698 837 3.586100 AACTTTTATTGGGCGCGAAAT 57.414 38.095 12.10 8.89 0.00 2.17
699 838 3.586100 ACTTTTATTGGGCGCGAAATT 57.414 38.095 12.10 0.00 0.00 1.82
700 839 3.920446 ACTTTTATTGGGCGCGAAATTT 58.080 36.364 12.10 0.00 0.00 1.82
701 840 4.311606 ACTTTTATTGGGCGCGAAATTTT 58.688 34.783 12.10 0.00 0.00 1.82
702 841 4.752604 ACTTTTATTGGGCGCGAAATTTTT 59.247 33.333 12.10 0.00 0.00 1.94
703 842 4.653806 TTTATTGGGCGCGAAATTTTTG 57.346 36.364 12.10 0.00 0.00 2.44
704 843 2.162319 ATTGGGCGCGAAATTTTTGT 57.838 40.000 12.10 0.00 0.00 2.83
705 844 1.212616 TTGGGCGCGAAATTTTTGTG 58.787 45.000 12.10 5.69 0.00 3.33
706 845 1.218230 TGGGCGCGAAATTTTTGTGC 61.218 50.000 21.55 21.55 38.36 4.57
709 848 1.127620 CGCGAAATTTTTGTGCGGC 59.872 52.632 0.00 0.00 44.65 6.53
710 849 1.491127 GCGAAATTTTTGTGCGGCC 59.509 52.632 0.00 0.00 0.00 6.13
711 850 1.772268 CGAAATTTTTGTGCGGCCG 59.228 52.632 24.05 24.05 0.00 6.13
712 851 0.937231 CGAAATTTTTGTGCGGCCGT 60.937 50.000 28.70 1.15 0.00 5.68
713 852 1.213491 GAAATTTTTGTGCGGCCGTT 58.787 45.000 28.70 9.54 0.00 4.44
714 853 0.933796 AAATTTTTGTGCGGCCGTTG 59.066 45.000 28.70 0.00 0.00 4.10
715 854 0.878086 AATTTTTGTGCGGCCGTTGG 60.878 50.000 28.70 0.00 0.00 3.77
716 855 1.739338 ATTTTTGTGCGGCCGTTGGA 61.739 50.000 28.70 8.23 0.00 3.53
717 856 2.343163 TTTTTGTGCGGCCGTTGGAG 62.343 55.000 28.70 0.00 0.00 3.86
718 857 3.758973 TTTGTGCGGCCGTTGGAGA 62.759 57.895 28.70 6.06 0.00 3.71
719 858 3.545124 TTGTGCGGCCGTTGGAGAT 62.545 57.895 28.70 0.00 0.00 2.75
720 859 3.499737 GTGCGGCCGTTGGAGATG 61.500 66.667 28.70 0.00 0.00 2.90
723 862 2.892425 CGGCCGTTGGAGATGCTC 60.892 66.667 19.50 0.00 0.00 4.26
724 863 2.586792 GGCCGTTGGAGATGCTCT 59.413 61.111 0.00 0.00 0.00 4.09
725 864 1.078143 GGCCGTTGGAGATGCTCTT 60.078 57.895 0.00 0.00 0.00 2.85
726 865 0.178068 GGCCGTTGGAGATGCTCTTA 59.822 55.000 0.00 0.00 0.00 2.10
727 866 1.576356 GCCGTTGGAGATGCTCTTAG 58.424 55.000 0.00 0.00 0.00 2.18
728 867 1.808133 GCCGTTGGAGATGCTCTTAGG 60.808 57.143 0.00 0.00 0.00 2.69
729 868 1.757118 CCGTTGGAGATGCTCTTAGGA 59.243 52.381 0.00 0.00 0.00 2.94
730 869 2.168521 CCGTTGGAGATGCTCTTAGGAA 59.831 50.000 0.00 0.00 0.00 3.36
731 870 3.369471 CCGTTGGAGATGCTCTTAGGAAA 60.369 47.826 0.00 0.00 0.00 3.13
732 871 3.868077 CGTTGGAGATGCTCTTAGGAAAG 59.132 47.826 0.00 0.00 0.00 2.62
733 872 4.195416 GTTGGAGATGCTCTTAGGAAAGG 58.805 47.826 0.00 0.00 33.22 3.11
734 873 2.171448 TGGAGATGCTCTTAGGAAAGGC 59.829 50.000 0.00 0.00 33.22 4.35
735 874 2.486370 GGAGATGCTCTTAGGAAAGGCC 60.486 54.545 0.00 0.00 33.22 5.19
755 894 3.565902 GCCTTATTCGCTAAATCTGGCTT 59.434 43.478 13.01 0.00 40.17 4.35
788 927 1.280457 CCAACTTGGCCTCCTAGTCT 58.720 55.000 3.32 0.00 38.53 3.24
876 1036 2.074576 CAGCACAACATCCTCTCACAG 58.925 52.381 0.00 0.00 0.00 3.66
883 1043 5.349817 CACAACATCCTCTCACAGATACAAC 59.650 44.000 0.00 0.00 0.00 3.32
884 1044 5.012046 ACAACATCCTCTCACAGATACAACA 59.988 40.000 0.00 0.00 0.00 3.33
885 1045 5.336150 ACATCCTCTCACAGATACAACAG 57.664 43.478 0.00 0.00 0.00 3.16
900 1064 2.008329 CAACAGCAGAGAGATCAAGCC 58.992 52.381 0.00 0.00 0.00 4.35
989 1181 2.710902 CCACTGGCGATCGTCTCCA 61.711 63.158 21.85 16.19 29.50 3.86
995 1187 1.063649 GCGATCGTCTCCAGCGTAA 59.936 57.895 17.81 0.00 0.00 3.18
1022 1214 2.511600 GCACCGGGAACTCCATCG 60.512 66.667 6.32 0.00 37.91 3.84
1025 1217 1.608336 ACCGGGAACTCCATCGACA 60.608 57.895 6.32 0.00 37.91 4.35
1102 1337 5.284861 TGCCATATACACAACCGTCTTAT 57.715 39.130 0.00 0.00 0.00 1.73
1123 1358 2.428171 TGTTTGCTTTGCTTCTCTGCTT 59.572 40.909 0.00 0.00 0.00 3.91
1170 1406 2.811747 CGGCGTAACGTGATGGCA 60.812 61.111 18.14 0.00 0.00 4.92
1175 1411 1.623081 CGTAACGTGATGGCAAGCGT 61.623 55.000 8.20 8.20 39.37 5.07
1347 1592 0.608130 TGCAGCTCGTGAGTATTGGT 59.392 50.000 0.00 0.00 0.00 3.67
1352 1597 1.404181 GCTCGTGAGTATTGGTGCTGA 60.404 52.381 0.00 0.00 0.00 4.26
1363 1608 2.561209 TGGTGCTGACCTCCCTATTA 57.439 50.000 0.00 0.00 43.58 0.98
1370 1615 3.118884 GCTGACCTCCCTATTAACAACGA 60.119 47.826 0.00 0.00 0.00 3.85
1464 1801 4.931002 GGACCTAAATAAACACTGTGCGTA 59.069 41.667 7.90 0.46 0.00 4.42
1576 2179 6.127869 GCATATCGCCTAATACTCTTGAGAGA 60.128 42.308 14.61 0.00 38.45 3.10
1673 2282 8.196771 ACTTGCTTTTTCTTACATTGTGATTGA 58.803 29.630 0.00 0.00 0.00 2.57
1709 2322 1.568597 CTCATTTCCCCATGGTACCCA 59.431 52.381 11.73 0.00 38.19 4.51
1710 2323 2.177669 CTCATTTCCCCATGGTACCCAT 59.822 50.000 11.73 0.00 46.37 4.00
1711 2324 3.397618 CTCATTTCCCCATGGTACCCATA 59.602 47.826 11.73 0.00 43.15 2.74
1712 2325 3.139397 TCATTTCCCCATGGTACCCATAC 59.861 47.826 11.73 0.00 43.15 2.39
1713 2326 2.288598 TTCCCCATGGTACCCATACA 57.711 50.000 11.73 0.00 43.15 2.29
1714 2327 2.288598 TCCCCATGGTACCCATACAA 57.711 50.000 11.73 0.00 43.15 2.41
1715 2328 2.795556 TCCCCATGGTACCCATACAAT 58.204 47.619 11.73 0.00 43.15 2.71
1716 2329 2.445145 TCCCCATGGTACCCATACAATG 59.555 50.000 11.73 5.05 43.15 2.82
1729 2342 5.714333 ACCCATACAATGATACAAACTTGCA 59.286 36.000 0.00 0.00 0.00 4.08
1753 2366 7.592533 GCATCTAGCACCATAATTTGTGTATTG 59.407 37.037 0.00 0.00 44.79 1.90
1757 2370 6.795399 AGCACCATAATTTGTGTATTGCTAC 58.205 36.000 10.45 0.00 34.94 3.58
1765 2378 7.461182 AATTTGTGTATTGCTACAGGCTAAA 57.539 32.000 0.00 0.00 38.51 1.85
1775 2388 2.774439 ACAGGCTAAAACGCACTTTG 57.226 45.000 0.00 0.00 0.00 2.77
1781 2394 3.365969 GGCTAAAACGCACTTTGCTATGT 60.366 43.478 0.00 0.00 42.25 2.29
1784 2397 2.050477 AACGCACTTTGCTATGTTGC 57.950 45.000 0.00 0.00 42.25 4.17
1797 2410 3.804325 GCTATGTTGCTCTTCGCTTATGA 59.196 43.478 0.00 0.00 40.11 2.15
1798 2411 4.084641 GCTATGTTGCTCTTCGCTTATGAG 60.085 45.833 0.00 0.00 40.11 2.90
1891 2504 9.188588 TGAACTGTCAAAACGTCTTATACTTAG 57.811 33.333 0.00 0.00 0.00 2.18
1896 2509 7.326789 TGTCAAAACGTCTTATACTTAGGAACG 59.673 37.037 0.00 0.00 0.00 3.95
1916 2531 8.858094 AGGAACGGAGGTAGTAGATTATTTTAG 58.142 37.037 0.00 0.00 0.00 1.85
1918 2533 9.676195 GAACGGAGGTAGTAGATTATTTTAGTC 57.324 37.037 0.00 0.00 0.00 2.59
2012 2633 8.568676 TCCATATAGCATACTAGACTGAAGAC 57.431 38.462 0.00 0.00 0.00 3.01
2014 2635 8.797438 CCATATAGCATACTAGACTGAAGACAA 58.203 37.037 0.00 0.00 0.00 3.18
2029 2650 7.164122 ACTGAAGACAATATTTGCTCTGAGAA 58.836 34.615 9.28 0.00 0.00 2.87
2038 2659 4.422073 TTTGCTCTGAGAAGGAAGTGAA 57.578 40.909 9.28 0.00 0.00 3.18
2049 2671 4.405358 AGAAGGAAGTGAATTTTTGGTGCA 59.595 37.500 0.00 0.00 0.00 4.57
2056 2678 7.063780 GGAAGTGAATTTTTGGTGCATGATTAG 59.936 37.037 0.00 0.00 0.00 1.73
2058 2680 5.581874 GTGAATTTTTGGTGCATGATTAGGG 59.418 40.000 0.00 0.00 0.00 3.53
2082 2704 4.383649 TGTCTTTACACGTTTCAGTATCGC 59.616 41.667 0.00 0.00 0.00 4.58
2091 2713 3.059570 CGTTTCAGTATCGCTGTCAGTTC 59.940 47.826 0.93 0.00 45.23 3.01
2096 2718 4.640647 TCAGTATCGCTGTCAGTTCATAGT 59.359 41.667 0.93 0.00 45.23 2.12
2105 2727 3.074412 GTCAGTTCATAGTGGTTGGGTG 58.926 50.000 0.00 0.00 0.00 4.61
2112 2734 2.515901 GTGGTTGGGTGAGCCACT 59.484 61.111 1.25 0.00 46.57 4.00
2141 2763 3.941483 CTCCTATTCCACGCTGAAATTGT 59.059 43.478 0.00 0.00 0.00 2.71
2160 2782 3.877559 TGTGGAATTCCTGCTATGACAG 58.122 45.455 24.73 0.00 37.42 3.51
2163 2785 3.126831 GGAATTCCTGCTATGACAGTCG 58.873 50.000 17.73 0.00 35.83 4.18
2166 2788 1.114627 TCCTGCTATGACAGTCGCAT 58.885 50.000 2.48 0.00 35.83 4.73
2168 2790 1.215244 CTGCTATGACAGTCGCATGG 58.785 55.000 2.48 0.00 32.78 3.66
2169 2791 0.179076 TGCTATGACAGTCGCATGGG 60.179 55.000 2.76 2.76 0.00 4.00
2170 2792 1.502163 GCTATGACAGTCGCATGGGC 61.502 60.000 4.59 0.45 0.00 5.36
2171 2793 0.105593 CTATGACAGTCGCATGGGCT 59.894 55.000 4.59 2.94 38.10 5.19
2172 2794 0.179076 TATGACAGTCGCATGGGCTG 60.179 55.000 23.08 23.08 38.10 4.85
2173 2795 2.821366 GACAGTCGCATGGGCTGG 60.821 66.667 26.02 13.13 38.10 4.85
2220 2842 4.093291 CGGCTCCCTGCTCAGCTT 62.093 66.667 0.00 0.00 42.39 3.74
2235 2857 4.620184 GCTCAGCTTGCTTGTTTAGATTTG 59.380 41.667 0.00 0.00 0.00 2.32
2236 2858 5.125100 TCAGCTTGCTTGTTTAGATTTGG 57.875 39.130 0.00 0.00 0.00 3.28
2237 2859 4.826733 TCAGCTTGCTTGTTTAGATTTGGA 59.173 37.500 0.00 0.00 0.00 3.53
2238 2860 5.301551 TCAGCTTGCTTGTTTAGATTTGGAA 59.698 36.000 0.00 0.00 0.00 3.53
2239 2861 5.984926 CAGCTTGCTTGTTTAGATTTGGAAA 59.015 36.000 0.00 0.00 0.00 3.13
2240 2862 6.479660 CAGCTTGCTTGTTTAGATTTGGAAAA 59.520 34.615 0.00 0.00 0.00 2.29
2241 2863 7.011295 CAGCTTGCTTGTTTAGATTTGGAAAAA 59.989 33.333 0.00 0.00 0.00 1.94
2280 2902 9.675464 AAATATGCTCATGGATTTTCAAAATGT 57.325 25.926 0.00 0.00 0.00 2.71
2281 2903 9.675464 AATATGCTCATGGATTTTCAAAATGTT 57.325 25.926 0.00 0.00 0.00 2.71
2282 2904 6.788684 TGCTCATGGATTTTCAAAATGTTG 57.211 33.333 0.00 0.00 35.95 3.33
2283 2905 6.289834 TGCTCATGGATTTTCAAAATGTTGT 58.710 32.000 0.00 0.00 36.07 3.32
2284 2906 7.440198 TGCTCATGGATTTTCAAAATGTTGTA 58.560 30.769 0.00 0.00 36.07 2.41
2285 2907 7.599621 TGCTCATGGATTTTCAAAATGTTGTAG 59.400 33.333 0.00 0.00 36.07 2.74
2286 2908 7.814107 GCTCATGGATTTTCAAAATGTTGTAGA 59.186 33.333 0.00 0.00 36.07 2.59
2287 2909 9.865321 CTCATGGATTTTCAAAATGTTGTAGAT 57.135 29.630 0.00 0.00 36.07 1.98
2336 2958 9.971922 GTTCAGGAATTAAGAAAATATCCATGG 57.028 33.333 4.97 4.97 0.00 3.66
2337 2959 9.934784 TTCAGGAATTAAGAAAATATCCATGGA 57.065 29.630 18.88 18.88 0.00 3.41
2354 2976 7.126726 TCCATGGATTTTTAAAACATTTGCG 57.873 32.000 11.44 0.00 0.00 4.85
2355 2977 6.931281 TCCATGGATTTTTAAAACATTTGCGA 59.069 30.769 11.44 0.00 0.00 5.10
2356 2978 7.605691 TCCATGGATTTTTAAAACATTTGCGAT 59.394 29.630 11.44 0.00 0.00 4.58
2357 2979 8.235905 CCATGGATTTTTAAAACATTTGCGATT 58.764 29.630 5.56 0.00 0.00 3.34
2358 2980 9.609950 CATGGATTTTTAAAACATTTGCGATTT 57.390 25.926 0.00 0.00 0.00 2.17
2360 2982 9.443283 TGGATTTTTAAAACATTTGCGATTTTG 57.557 25.926 0.00 0.00 0.00 2.44
2361 2983 8.416424 GGATTTTTAAAACATTTGCGATTTTGC 58.584 29.630 0.00 0.00 0.00 3.68
2362 2984 9.168353 GATTTTTAAAACATTTGCGATTTTGCT 57.832 25.926 0.00 0.00 35.36 3.91
2363 2985 8.902040 TTTTTAAAACATTTGCGATTTTGCTT 57.098 23.077 0.00 0.00 35.36 3.91
2364 2986 8.902040 TTTTAAAACATTTGCGATTTTGCTTT 57.098 23.077 0.00 0.00 35.36 3.51
2365 2987 9.988350 TTTTAAAACATTTGCGATTTTGCTTTA 57.012 22.222 0.00 0.00 35.36 1.85
2366 2988 9.988350 TTTAAAACATTTGCGATTTTGCTTTAA 57.012 22.222 0.00 0.00 35.36 1.52
2367 2989 9.988350 TTAAAACATTTGCGATTTTGCTTTAAA 57.012 22.222 0.00 0.00 35.36 1.52
2368 2990 8.545749 AAAACATTTGCGATTTTGCTTTAAAG 57.454 26.923 11.02 11.02 35.36 1.85
2369 2991 6.843069 ACATTTGCGATTTTGCTTTAAAGT 57.157 29.167 16.38 0.00 35.36 2.66
2370 2992 6.876804 ACATTTGCGATTTTGCTTTAAAGTC 58.123 32.000 16.38 9.40 33.17 3.01
2371 2993 6.701400 ACATTTGCGATTTTGCTTTAAAGTCT 59.299 30.769 16.38 0.00 34.04 3.24
2372 2994 6.747659 TTTGCGATTTTGCTTTAAAGTCTC 57.252 33.333 16.38 2.06 34.04 3.36
2373 2995 5.431420 TGCGATTTTGCTTTAAAGTCTCA 57.569 34.783 16.38 4.52 34.04 3.27
2374 2996 5.826586 TGCGATTTTGCTTTAAAGTCTCAA 58.173 33.333 16.38 9.39 34.04 3.02
2375 2997 6.269315 TGCGATTTTGCTTTAAAGTCTCAAA 58.731 32.000 16.38 14.22 34.04 2.69
2376 2998 6.198216 TGCGATTTTGCTTTAAAGTCTCAAAC 59.802 34.615 16.38 7.35 34.04 2.93
2377 2999 6.417930 GCGATTTTGCTTTAAAGTCTCAAACT 59.582 34.615 16.38 11.69 41.10 2.66
2378 3000 7.589954 GCGATTTTGCTTTAAAGTCTCAAACTA 59.410 33.333 16.38 5.63 37.17 2.24
2379 3001 9.445786 CGATTTTGCTTTAAAGTCTCAAACTAA 57.554 29.630 16.38 5.04 37.17 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.494721 TGGAAGCTTCTCACCCAGTTT 59.505 47.619 25.05 0.00 0.00 2.66
41 42 2.545526 ACATAGCGATTTTCATGGAGCG 59.454 45.455 0.00 0.00 0.00 5.03
46 48 5.197549 CGGTTGTACATAGCGATTTTCATG 58.802 41.667 18.41 0.00 38.68 3.07
59 61 0.981183 TTCCTGGAGCGGTTGTACAT 59.019 50.000 0.00 0.00 0.00 2.29
64 66 2.032528 TGCTTCCTGGAGCGGTTG 59.967 61.111 11.67 0.00 45.64 3.77
86 89 1.348594 GGTAATCAAGCGACGCTGC 59.651 57.895 25.24 4.16 39.62 5.25
90 93 2.522638 GCCGGGTAATCAAGCGACG 61.523 63.158 2.18 0.00 0.00 5.12
93 96 2.900337 GGGCCGGGTAATCAAGCG 60.900 66.667 2.18 0.00 0.00 4.68
150 153 2.048127 GATATGGGCCGTCCGCTC 60.048 66.667 0.00 0.00 39.08 5.03
159 162 1.207329 GGATACGGGAGTGATATGGGC 59.793 57.143 0.00 0.00 46.80 5.36
167 170 0.462047 GCTGTTGGGATACGGGAGTG 60.462 60.000 0.00 0.00 46.80 3.51
173 176 2.260844 ATGGATGCTGTTGGGATACG 57.739 50.000 0.00 0.00 37.60 3.06
184 187 7.067494 GGATACTGTTTTTCTTGTATGGATGCT 59.933 37.037 0.00 0.00 0.00 3.79
194 197 3.991773 TCGGTCGGATACTGTTTTTCTTG 59.008 43.478 0.00 0.00 35.78 3.02
205 208 1.135575 ACGTTCTTGTCGGTCGGATAC 60.136 52.381 0.00 0.00 0.00 2.24
221 224 5.066893 TGGAGAAACTATATACAGCGACGTT 59.933 40.000 0.00 0.00 0.00 3.99
278 412 4.306967 TCGGTGCATGCGTGTGGA 62.307 61.111 14.09 2.93 0.00 4.02
309 443 4.506255 GGAAGGGGGTGCATCCGG 62.506 72.222 10.62 0.00 37.00 5.14
310 444 2.983879 AAGGAAGGGGGTGCATCCG 61.984 63.158 10.62 0.00 37.05 4.18
313 447 1.856873 TCCAAGGAAGGGGGTGCAT 60.857 57.895 0.00 0.00 0.00 3.96
318 452 2.763902 GTGGTCCAAGGAAGGGGG 59.236 66.667 0.00 0.00 0.00 5.40
336 470 2.355956 GTAGGATAGGGTGCGCGC 60.356 66.667 27.26 27.26 0.00 6.86
341 475 1.687123 CCAACGGAGTAGGATAGGGTG 59.313 57.143 0.00 0.00 45.00 4.61
385 522 1.883084 CAACCAGTATCGGAGCCGC 60.883 63.158 3.59 0.00 39.59 6.53
414 553 3.525537 CGTGTGTTGGAGATGCTCTAAT 58.474 45.455 0.00 0.00 33.81 1.73
420 559 0.950555 TGAGCGTGTGTTGGAGATGC 60.951 55.000 0.00 0.00 0.00 3.91
421 560 1.511850 TTGAGCGTGTGTTGGAGATG 58.488 50.000 0.00 0.00 0.00 2.90
422 561 2.254546 TTTGAGCGTGTGTTGGAGAT 57.745 45.000 0.00 0.00 0.00 2.75
423 562 2.031258 TTTTGAGCGTGTGTTGGAGA 57.969 45.000 0.00 0.00 0.00 3.71
424 563 2.842208 TTTTTGAGCGTGTGTTGGAG 57.158 45.000 0.00 0.00 0.00 3.86
444 583 9.314327 AAAACAAATTTTTAATGCGCGGAGCTT 62.314 33.333 8.83 0.00 43.55 3.74
445 584 7.937169 AAAACAAATTTTTAATGCGCGGAGCT 61.937 34.615 8.83 0.00 43.55 4.09
446 585 5.838113 AAAACAAATTTTTAATGCGCGGAGC 60.838 36.000 8.83 0.00 42.67 4.70
447 586 4.901866 AACAAATTTTTAATGCGCGGAG 57.098 36.364 8.83 0.00 0.00 4.63
448 587 5.659048 AAAACAAATTTTTAATGCGCGGA 57.341 30.435 8.83 5.00 34.19 5.54
470 609 0.383949 GGAGCTGTTCGGCACAAAAA 59.616 50.000 0.00 0.00 33.87 1.94
471 610 0.749818 TGGAGCTGTTCGGCACAAAA 60.750 50.000 0.00 0.00 33.87 2.44
472 611 1.153066 TGGAGCTGTTCGGCACAAA 60.153 52.632 0.00 0.00 33.87 2.83
473 612 1.597854 CTGGAGCTGTTCGGCACAA 60.598 57.895 0.00 0.00 33.87 3.33
474 613 2.031012 CTGGAGCTGTTCGGCACA 59.969 61.111 0.00 4.07 34.17 4.57
475 614 3.426568 GCTGGAGCTGTTCGGCAC 61.427 66.667 0.00 0.00 38.21 5.01
476 615 3.889134 CTGCTGGAGCTGTTCGGCA 62.889 63.158 12.43 12.43 42.66 5.69
477 616 2.866085 ATCTGCTGGAGCTGTTCGGC 62.866 60.000 0.00 0.00 42.66 5.54
478 617 1.088340 CATCTGCTGGAGCTGTTCGG 61.088 60.000 0.00 0.00 42.66 4.30
479 618 1.703438 GCATCTGCTGGAGCTGTTCG 61.703 60.000 0.00 0.00 42.66 3.95
480 619 2.096596 GCATCTGCTGGAGCTGTTC 58.903 57.895 0.00 0.00 42.66 3.18
481 620 4.315588 GCATCTGCTGGAGCTGTT 57.684 55.556 0.00 0.00 42.66 3.16
491 630 1.290203 TTTAGCGCTACAGCATCTGC 58.710 50.000 18.63 0.00 42.21 4.26
492 631 2.932614 ACTTTTAGCGCTACAGCATCTG 59.067 45.455 18.63 4.43 42.21 2.90
493 632 3.252974 ACTTTTAGCGCTACAGCATCT 57.747 42.857 18.63 0.00 42.21 2.90
494 633 4.342352 AAACTTTTAGCGCTACAGCATC 57.658 40.909 18.63 0.00 42.21 3.91
495 634 4.766404 AAAACTTTTAGCGCTACAGCAT 57.234 36.364 18.63 6.29 42.21 3.79
496 635 4.153475 CCTAAAACTTTTAGCGCTACAGCA 59.847 41.667 18.63 0.00 42.21 4.41
497 636 4.436986 CCCTAAAACTTTTAGCGCTACAGC 60.437 45.833 18.63 0.00 37.78 4.40
498 637 4.436986 GCCCTAAAACTTTTAGCGCTACAG 60.437 45.833 18.63 18.01 0.00 2.74
499 638 3.437741 GCCCTAAAACTTTTAGCGCTACA 59.562 43.478 18.63 8.18 0.00 2.74
500 639 3.484721 CGCCCTAAAACTTTTAGCGCTAC 60.485 47.826 18.63 0.00 35.33 3.58
501 640 2.674357 CGCCCTAAAACTTTTAGCGCTA 59.326 45.455 14.45 14.45 35.33 4.26
502 641 1.467342 CGCCCTAAAACTTTTAGCGCT 59.533 47.619 17.26 17.26 35.33 5.92
503 642 1.891178 CGCCCTAAAACTTTTAGCGC 58.109 50.000 16.28 16.28 35.33 5.92
504 643 1.789054 CGCGCCCTAAAACTTTTAGCG 60.789 52.381 17.34 17.34 44.54 4.26
505 644 1.198408 ACGCGCCCTAAAACTTTTAGC 59.802 47.619 5.73 5.83 0.00 3.09
506 645 2.846693 CACGCGCCCTAAAACTTTTAG 58.153 47.619 5.73 12.65 0.00 1.85
507 646 1.069091 GCACGCGCCCTAAAACTTTTA 60.069 47.619 5.73 0.00 0.00 1.52
508 647 0.318360 GCACGCGCCCTAAAACTTTT 60.318 50.000 5.73 0.00 0.00 2.27
509 648 1.170290 AGCACGCGCCCTAAAACTTT 61.170 50.000 5.73 0.00 39.83 2.66
510 649 1.599797 AGCACGCGCCCTAAAACTT 60.600 52.632 5.73 0.00 39.83 2.66
511 650 2.032071 AGCACGCGCCCTAAAACT 59.968 55.556 5.73 0.00 39.83 2.66
512 651 1.847890 TTCAGCACGCGCCCTAAAAC 61.848 55.000 5.73 0.00 39.83 2.43
513 652 1.167155 TTTCAGCACGCGCCCTAAAA 61.167 50.000 5.73 0.00 39.83 1.52
514 653 1.167155 TTTTCAGCACGCGCCCTAAA 61.167 50.000 5.73 0.00 39.83 1.85
515 654 1.167155 TTTTTCAGCACGCGCCCTAA 61.167 50.000 5.73 0.00 39.83 2.69
516 655 1.598407 TTTTTCAGCACGCGCCCTA 60.598 52.632 5.73 0.00 39.83 3.53
517 656 2.904866 TTTTTCAGCACGCGCCCT 60.905 55.556 5.73 0.00 39.83 5.19
518 657 2.729491 GTTTTTCAGCACGCGCCC 60.729 61.111 5.73 0.00 39.83 6.13
519 658 3.091022 CGTTTTTCAGCACGCGCC 61.091 61.111 5.73 0.00 39.83 6.53
523 662 1.785881 CGATAGCGTTTTTCAGCACG 58.214 50.000 0.00 0.00 39.49 5.34
537 676 0.439985 AAATATGCTGCGCGCGATAG 59.560 50.000 37.18 29.48 43.27 2.08
538 677 0.865111 AAAATATGCTGCGCGCGATA 59.135 45.000 37.18 22.34 43.27 2.92
539 678 0.658244 CAAAATATGCTGCGCGCGAT 60.658 50.000 37.18 20.72 43.27 4.58
540 679 1.297524 CAAAATATGCTGCGCGCGA 60.298 52.632 37.18 17.91 43.27 5.87
541 680 1.583451 ACAAAATATGCTGCGCGCG 60.583 52.632 28.44 28.44 43.27 6.86
542 681 1.912281 CACAAAATATGCTGCGCGC 59.088 52.632 27.26 27.26 39.77 6.86
543 682 1.912281 GCACAAAATATGCTGCGCG 59.088 52.632 0.00 0.00 40.08 6.86
549 688 3.374745 CAATCCGGAGCACAAAATATGC 58.625 45.455 11.34 0.00 43.74 3.14
550 689 3.374745 GCAATCCGGAGCACAAAATATG 58.625 45.455 11.34 0.00 0.00 1.78
551 690 2.033299 CGCAATCCGGAGCACAAAATAT 59.967 45.455 11.34 0.00 0.00 1.28
552 691 1.400142 CGCAATCCGGAGCACAAAATA 59.600 47.619 11.34 0.00 0.00 1.40
553 692 0.171007 CGCAATCCGGAGCACAAAAT 59.829 50.000 11.34 0.00 0.00 1.82
554 693 1.578926 CGCAATCCGGAGCACAAAA 59.421 52.632 11.34 0.00 0.00 2.44
555 694 2.976840 GCGCAATCCGGAGCACAAA 61.977 57.895 11.34 0.00 37.44 2.83
556 695 3.430862 GCGCAATCCGGAGCACAA 61.431 61.111 11.34 0.00 37.44 3.33
570 709 1.832913 CAAATTATGAAGCGCGCGC 59.167 52.632 45.10 45.10 42.33 6.86
571 710 0.861034 TGCAAATTATGAAGCGCGCG 60.861 50.000 28.44 28.44 0.00 6.86
572 711 0.567509 GTGCAAATTATGAAGCGCGC 59.432 50.000 26.66 26.66 0.00 6.86
573 712 1.841944 CAGTGCAAATTATGAAGCGCG 59.158 47.619 0.00 0.00 41.96 6.86
574 713 2.848302 GACAGTGCAAATTATGAAGCGC 59.152 45.455 0.00 0.00 37.74 5.92
575 714 4.093514 CAGACAGTGCAAATTATGAAGCG 58.906 43.478 0.00 0.00 0.00 4.68
589 728 1.536709 GCACCCAAAAAGCAGACAGTG 60.537 52.381 0.00 0.00 0.00 3.66
590 729 0.746659 GCACCCAAAAAGCAGACAGT 59.253 50.000 0.00 0.00 0.00 3.55
591 730 0.318107 CGCACCCAAAAAGCAGACAG 60.318 55.000 0.00 0.00 0.00 3.51
592 731 1.732917 CGCACCCAAAAAGCAGACA 59.267 52.632 0.00 0.00 0.00 3.41
593 732 1.661509 GCGCACCCAAAAAGCAGAC 60.662 57.895 0.30 0.00 0.00 3.51
594 733 2.727544 GCGCACCCAAAAAGCAGA 59.272 55.556 0.30 0.00 0.00 4.26
595 734 2.730604 CGCGCACCCAAAAAGCAG 60.731 61.111 8.75 0.00 0.00 4.24
596 735 2.564553 AAACGCGCACCCAAAAAGCA 62.565 50.000 5.73 0.00 0.00 3.91
597 736 1.425267 AAAACGCGCACCCAAAAAGC 61.425 50.000 5.73 0.00 0.00 3.51
598 737 1.003108 AAAAACGCGCACCCAAAAAG 58.997 45.000 5.73 0.00 0.00 2.27
599 738 0.721718 CAAAAACGCGCACCCAAAAA 59.278 45.000 5.73 0.00 0.00 1.94
600 739 1.084370 CCAAAAACGCGCACCCAAAA 61.084 50.000 5.73 0.00 0.00 2.44
601 740 1.519455 CCAAAAACGCGCACCCAAA 60.519 52.632 5.73 0.00 0.00 3.28
602 741 2.105128 CCAAAAACGCGCACCCAA 59.895 55.556 5.73 0.00 0.00 4.12
603 742 3.905678 CCCAAAAACGCGCACCCA 61.906 61.111 5.73 0.00 0.00 4.51
605 744 3.857109 ATGCCCAAAAACGCGCACC 62.857 57.895 5.73 0.00 33.31 5.01
606 745 2.355718 ATGCCCAAAAACGCGCAC 60.356 55.556 5.73 0.00 33.31 5.34
607 746 2.049618 GATGCCCAAAAACGCGCA 60.050 55.556 5.73 0.00 35.35 6.09
608 747 2.088178 CAGATGCCCAAAAACGCGC 61.088 57.895 5.73 0.00 0.00 6.86
609 748 0.318614 AACAGATGCCCAAAAACGCG 60.319 50.000 3.53 3.53 0.00 6.01
610 749 2.715737 TAACAGATGCCCAAAAACGC 57.284 45.000 0.00 0.00 0.00 4.84
611 750 3.428534 GCTTTAACAGATGCCCAAAAACG 59.571 43.478 0.00 0.00 0.00 3.60
612 751 4.376146 TGCTTTAACAGATGCCCAAAAAC 58.624 39.130 0.00 0.00 0.00 2.43
613 752 4.679373 TGCTTTAACAGATGCCCAAAAA 57.321 36.364 0.00 0.00 0.00 1.94
614 753 4.679373 TTGCTTTAACAGATGCCCAAAA 57.321 36.364 0.00 0.00 0.00 2.44
615 754 4.040217 ACATTGCTTTAACAGATGCCCAAA 59.960 37.500 0.00 0.00 0.00 3.28
616 755 3.577848 ACATTGCTTTAACAGATGCCCAA 59.422 39.130 0.00 0.00 0.00 4.12
617 756 3.164268 ACATTGCTTTAACAGATGCCCA 58.836 40.909 0.00 0.00 0.00 5.36
618 757 3.874392 ACATTGCTTTAACAGATGCCC 57.126 42.857 0.00 0.00 0.00 5.36
619 758 3.928375 CCAACATTGCTTTAACAGATGCC 59.072 43.478 0.00 0.00 0.00 4.40
620 759 4.559153 ACCAACATTGCTTTAACAGATGC 58.441 39.130 0.00 0.00 0.00 3.91
621 760 5.163513 GGACCAACATTGCTTTAACAGATG 58.836 41.667 0.00 0.00 0.00 2.90
622 761 4.220602 GGGACCAACATTGCTTTAACAGAT 59.779 41.667 0.00 0.00 0.00 2.90
623 762 3.572255 GGGACCAACATTGCTTTAACAGA 59.428 43.478 0.00 0.00 0.00 3.41
624 763 3.611530 CGGGACCAACATTGCTTTAACAG 60.612 47.826 0.00 0.00 0.00 3.16
625 764 2.294791 CGGGACCAACATTGCTTTAACA 59.705 45.455 0.00 0.00 0.00 2.41
626 765 2.352323 CCGGGACCAACATTGCTTTAAC 60.352 50.000 0.00 0.00 0.00 2.01
627 766 1.889829 CCGGGACCAACATTGCTTTAA 59.110 47.619 0.00 0.00 0.00 1.52
628 767 1.540267 CCGGGACCAACATTGCTTTA 58.460 50.000 0.00 0.00 0.00 1.85
629 768 1.815817 GCCGGGACCAACATTGCTTT 61.816 55.000 2.18 0.00 0.00 3.51
630 769 2.275380 GCCGGGACCAACATTGCTT 61.275 57.895 2.18 0.00 0.00 3.91
631 770 2.676471 GCCGGGACCAACATTGCT 60.676 61.111 2.18 0.00 0.00 3.91
632 771 4.114997 CGCCGGGACCAACATTGC 62.115 66.667 2.18 0.00 0.00 3.56
633 772 4.114997 GCGCCGGGACCAACATTG 62.115 66.667 2.18 0.00 0.00 2.82
634 773 3.936772 ATGCGCCGGGACCAACATT 62.937 57.895 4.18 0.00 0.00 2.71
635 774 2.544590 TAATGCGCCGGGACCAACAT 62.545 55.000 4.18 0.00 0.00 2.71
636 775 2.749706 TTAATGCGCCGGGACCAACA 62.750 55.000 4.18 0.00 0.00 3.33
637 776 1.587933 TTTAATGCGCCGGGACCAAC 61.588 55.000 4.18 0.00 0.00 3.77
638 777 0.894184 TTTTAATGCGCCGGGACCAA 60.894 50.000 4.18 0.00 0.00 3.67
639 778 1.303398 TTTTAATGCGCCGGGACCA 60.303 52.632 4.18 0.00 0.00 4.02
640 779 1.310216 ACTTTTAATGCGCCGGGACC 61.310 55.000 4.18 0.00 0.00 4.46
641 780 0.179174 CACTTTTAATGCGCCGGGAC 60.179 55.000 4.18 0.00 0.00 4.46
642 781 1.928706 GCACTTTTAATGCGCCGGGA 61.929 55.000 4.18 0.00 32.45 5.14
643 782 1.516169 GCACTTTTAATGCGCCGGG 60.516 57.895 4.18 0.00 32.45 5.73
644 783 4.071374 GCACTTTTAATGCGCCGG 57.929 55.556 4.18 0.00 32.45 6.13
649 788 4.084013 ACGTCACTGTAGCACTTTTAATGC 60.084 41.667 0.00 0.00 43.74 3.56
650 789 5.591643 ACGTCACTGTAGCACTTTTAATG 57.408 39.130 0.00 0.00 0.00 1.90
651 790 5.526111 ACAACGTCACTGTAGCACTTTTAAT 59.474 36.000 0.00 0.00 0.00 1.40
652 791 4.871557 ACAACGTCACTGTAGCACTTTTAA 59.128 37.500 0.00 0.00 0.00 1.52
653 792 4.435425 ACAACGTCACTGTAGCACTTTTA 58.565 39.130 0.00 0.00 0.00 1.52
654 793 3.267483 ACAACGTCACTGTAGCACTTTT 58.733 40.909 0.00 0.00 0.00 2.27
655 794 2.901249 ACAACGTCACTGTAGCACTTT 58.099 42.857 0.00 0.00 0.00 2.66
656 795 2.596904 ACAACGTCACTGTAGCACTT 57.403 45.000 0.00 0.00 0.00 3.16
657 796 3.720949 TTACAACGTCACTGTAGCACT 57.279 42.857 0.00 0.00 31.17 4.40
658 797 4.269363 AGTTTTACAACGTCACTGTAGCAC 59.731 41.667 0.00 0.00 38.03 4.40
659 798 4.435425 AGTTTTACAACGTCACTGTAGCA 58.565 39.130 0.00 0.00 38.03 3.49
660 799 5.399604 AAGTTTTACAACGTCACTGTAGC 57.600 39.130 0.00 0.00 38.03 3.58
661 800 9.925268 AATAAAAGTTTTACAACGTCACTGTAG 57.075 29.630 10.20 0.00 38.03 2.74
662 801 9.705471 CAATAAAAGTTTTACAACGTCACTGTA 57.295 29.630 10.20 0.00 38.03 2.74
663 802 7.698970 CCAATAAAAGTTTTACAACGTCACTGT 59.301 33.333 10.20 0.00 38.03 3.55
664 803 7.166804 CCCAATAAAAGTTTTACAACGTCACTG 59.833 37.037 10.20 0.00 38.03 3.66
665 804 7.197703 CCCAATAAAAGTTTTACAACGTCACT 58.802 34.615 10.20 0.00 38.03 3.41
666 805 6.074729 GCCCAATAAAAGTTTTACAACGTCAC 60.075 38.462 10.20 0.00 38.03 3.67
667 806 5.978322 GCCCAATAAAAGTTTTACAACGTCA 59.022 36.000 10.20 0.00 38.03 4.35
668 807 5.115923 CGCCCAATAAAAGTTTTACAACGTC 59.884 40.000 10.20 0.00 38.03 4.34
669 808 4.977347 CGCCCAATAAAAGTTTTACAACGT 59.023 37.500 10.20 0.00 38.03 3.99
670 809 4.143494 GCGCCCAATAAAAGTTTTACAACG 60.143 41.667 10.20 10.69 38.03 4.10
671 810 4.143494 CGCGCCCAATAAAAGTTTTACAAC 60.143 41.667 10.20 0.00 0.00 3.32
672 811 3.982058 CGCGCCCAATAAAAGTTTTACAA 59.018 39.130 10.20 0.00 0.00 2.41
673 812 3.252701 TCGCGCCCAATAAAAGTTTTACA 59.747 39.130 10.20 0.00 0.00 2.41
674 813 3.824151 TCGCGCCCAATAAAAGTTTTAC 58.176 40.909 10.20 0.00 0.00 2.01
675 814 4.500603 TTCGCGCCCAATAAAAGTTTTA 57.499 36.364 10.39 10.39 0.00 1.52
676 815 3.372660 TTCGCGCCCAATAAAAGTTTT 57.627 38.095 0.00 6.06 0.00 2.43
677 816 3.372660 TTTCGCGCCCAATAAAAGTTT 57.627 38.095 0.00 0.00 0.00 2.66
678 817 3.586100 ATTTCGCGCCCAATAAAAGTT 57.414 38.095 0.00 0.00 0.00 2.66
679 818 3.586100 AATTTCGCGCCCAATAAAAGT 57.414 38.095 0.00 0.00 0.00 2.66
680 819 4.919677 AAAATTTCGCGCCCAATAAAAG 57.080 36.364 0.00 0.00 0.00 2.27
681 820 4.511826 ACAAAAATTTCGCGCCCAATAAAA 59.488 33.333 0.00 0.00 0.00 1.52
682 821 4.058817 ACAAAAATTTCGCGCCCAATAAA 58.941 34.783 0.00 0.00 0.00 1.40
683 822 3.430218 CACAAAAATTTCGCGCCCAATAA 59.570 39.130 0.00 0.00 0.00 1.40
684 823 2.989840 CACAAAAATTTCGCGCCCAATA 59.010 40.909 0.00 0.00 0.00 1.90
685 824 1.797635 CACAAAAATTTCGCGCCCAAT 59.202 42.857 0.00 0.00 0.00 3.16
686 825 1.212616 CACAAAAATTTCGCGCCCAA 58.787 45.000 0.00 0.00 0.00 4.12
687 826 1.218230 GCACAAAAATTTCGCGCCCA 61.218 50.000 0.00 0.00 0.00 5.36
688 827 1.491127 GCACAAAAATTTCGCGCCC 59.509 52.632 0.00 0.00 0.00 6.13
689 828 1.127620 CGCACAAAAATTTCGCGCC 59.872 52.632 0.00 0.00 39.43 6.53
690 829 1.127620 CCGCACAAAAATTTCGCGC 59.872 52.632 0.00 0.00 44.36 6.86
691 830 1.127620 GCCGCACAAAAATTTCGCG 59.872 52.632 0.00 0.00 45.25 5.87
692 831 1.491127 GGCCGCACAAAAATTTCGC 59.509 52.632 0.00 0.00 0.00 4.70
693 832 0.937231 ACGGCCGCACAAAAATTTCG 60.937 50.000 28.58 0.00 0.00 3.46
694 833 1.070909 CAACGGCCGCACAAAAATTTC 60.071 47.619 28.58 0.00 0.00 2.17
695 834 0.933796 CAACGGCCGCACAAAAATTT 59.066 45.000 28.58 5.37 0.00 1.82
696 835 0.878086 CCAACGGCCGCACAAAAATT 60.878 50.000 28.58 6.25 0.00 1.82
697 836 1.300542 CCAACGGCCGCACAAAAAT 60.301 52.632 28.58 0.00 0.00 1.82
698 837 2.105128 CCAACGGCCGCACAAAAA 59.895 55.556 28.58 0.00 0.00 1.94
699 838 2.829003 TCCAACGGCCGCACAAAA 60.829 55.556 28.58 2.77 0.00 2.44
700 839 3.283684 CTCCAACGGCCGCACAAA 61.284 61.111 28.58 6.34 0.00 2.83
701 840 3.545124 ATCTCCAACGGCCGCACAA 62.545 57.895 28.58 7.99 0.00 3.33
702 841 4.015406 ATCTCCAACGGCCGCACA 62.015 61.111 28.58 5.68 0.00 4.57
703 842 3.499737 CATCTCCAACGGCCGCAC 61.500 66.667 28.58 0.00 0.00 5.34
706 845 2.892425 GAGCATCTCCAACGGCCG 60.892 66.667 26.86 26.86 0.00 6.13
714 853 4.772670 AGGCCTTTCCTAAGAGCATCTCC 61.773 52.174 0.00 0.00 43.72 3.71
715 854 2.437651 AGGCCTTTCCTAAGAGCATCTC 59.562 50.000 0.00 0.00 43.72 2.75
716 855 2.486716 AGGCCTTTCCTAAGAGCATCT 58.513 47.619 0.00 0.00 45.41 2.90
717 856 3.289407 AAGGCCTTTCCTAAGAGCATC 57.711 47.619 13.78 0.00 46.94 3.91
718 857 5.380900 GAATAAGGCCTTTCCTAAGAGCAT 58.619 41.667 26.08 3.50 46.94 3.79
719 858 4.683400 CGAATAAGGCCTTTCCTAAGAGCA 60.683 45.833 26.08 0.64 46.94 4.26
720 859 3.810386 CGAATAAGGCCTTTCCTAAGAGC 59.190 47.826 26.08 2.59 46.94 4.09
721 860 3.810386 GCGAATAAGGCCTTTCCTAAGAG 59.190 47.826 26.08 8.53 46.94 2.85
722 861 3.454812 AGCGAATAAGGCCTTTCCTAAGA 59.545 43.478 26.08 3.31 46.94 2.10
723 862 3.809905 AGCGAATAAGGCCTTTCCTAAG 58.190 45.455 26.08 11.72 46.94 2.18
724 863 3.926058 AGCGAATAAGGCCTTTCCTAA 57.074 42.857 26.08 5.09 46.94 2.69
725 864 5.362105 TTTAGCGAATAAGGCCTTTCCTA 57.638 39.130 26.08 15.34 46.94 2.94
727 866 4.822350 AGATTTAGCGAATAAGGCCTTTCC 59.178 41.667 26.08 12.05 0.00 3.13
728 867 5.278022 CCAGATTTAGCGAATAAGGCCTTTC 60.278 44.000 26.08 15.41 0.00 2.62
729 868 4.580580 CCAGATTTAGCGAATAAGGCCTTT 59.419 41.667 26.08 6.29 0.00 3.11
730 869 4.137543 CCAGATTTAGCGAATAAGGCCTT 58.862 43.478 24.18 24.18 0.00 4.35
731 870 3.744660 CCAGATTTAGCGAATAAGGCCT 58.255 45.455 0.00 0.00 0.00 5.19
732 871 2.226674 GCCAGATTTAGCGAATAAGGCC 59.773 50.000 14.56 0.00 39.81 5.19
733 872 3.142174 AGCCAGATTTAGCGAATAAGGC 58.858 45.455 16.34 16.34 43.17 4.35
734 873 4.816385 TCAAGCCAGATTTAGCGAATAAGG 59.184 41.667 0.00 0.00 0.00 2.69
735 874 5.991328 TCAAGCCAGATTTAGCGAATAAG 57.009 39.130 0.00 0.00 0.00 1.73
736 875 6.942532 AATCAAGCCAGATTTAGCGAATAA 57.057 33.333 0.00 0.00 34.70 1.40
737 876 6.942532 AAATCAAGCCAGATTTAGCGAATA 57.057 33.333 11.11 0.00 44.15 1.75
738 877 5.841957 AAATCAAGCCAGATTTAGCGAAT 57.158 34.783 11.11 0.00 44.15 3.34
788 927 2.159226 CCAAGTTGCCACGGTTTAACAA 60.159 45.455 0.00 0.00 0.00 2.83
834 975 1.376543 CTGAGTGTGGTGCATGGATC 58.623 55.000 0.00 0.00 0.00 3.36
876 1036 4.507388 GCTTGATCTCTCTGCTGTTGTATC 59.493 45.833 0.00 0.00 0.00 2.24
883 1043 0.459078 TCGGCTTGATCTCTCTGCTG 59.541 55.000 0.00 0.00 32.80 4.41
884 1044 1.412079 ATCGGCTTGATCTCTCTGCT 58.588 50.000 0.00 0.00 28.49 4.24
885 1045 3.984838 ATCGGCTTGATCTCTCTGC 57.015 52.632 0.00 0.00 28.49 4.26
1102 1337 2.026641 AGCAGAGAAGCAAAGCAAACA 58.973 42.857 0.00 0.00 36.85 2.83
1347 1592 3.369052 CGTTGTTAATAGGGAGGTCAGCA 60.369 47.826 0.00 0.00 0.00 4.41
1352 1597 2.417787 GCGTCGTTGTTAATAGGGAGGT 60.418 50.000 0.00 0.00 0.00 3.85
1363 1608 1.952635 GGTTCTCGGCGTCGTTGTT 60.953 57.895 10.18 0.00 37.69 2.83
1370 1615 2.490217 CGATGAGGTTCTCGGCGT 59.510 61.111 6.85 0.00 32.35 5.68
1433 1759 7.494625 ACAGTGTTTATTTAGGTCCGTCATATG 59.505 37.037 0.00 0.00 0.00 1.78
1464 1801 2.350419 TGGGTACATTGGTAGGTTGGT 58.650 47.619 0.00 0.00 0.00 3.67
1576 2179 2.476352 CGAACATCGATCACGTGACTCT 60.476 50.000 22.71 4.83 43.74 3.24
1578 2181 1.199327 ACGAACATCGATCACGTGACT 59.801 47.619 22.71 10.33 43.74 3.41
1602 2205 7.549134 TCATAGACGTAGCTTCATTTTTCACAT 59.451 33.333 0.00 0.00 0.00 3.21
1673 2282 7.068716 GGGGAAATGAGCTGATAAACAAGTAAT 59.931 37.037 0.00 0.00 0.00 1.89
1729 2342 7.503566 AGCAATACACAAATTATGGTGCTAGAT 59.496 33.333 12.29 0.00 38.57 1.98
1753 2366 1.439679 AGTGCGTTTTAGCCTGTAGC 58.560 50.000 0.00 0.00 44.25 3.58
1757 2370 1.408422 GCAAAGTGCGTTTTAGCCTG 58.592 50.000 0.00 0.00 31.71 4.85
1784 2397 7.421599 TGAGTTAATCTCTCATAAGCGAAGAG 58.578 38.462 0.00 0.00 43.13 2.85
1810 2423 7.407918 AGGAATAGAGGGAGTATTGGGTAAAAA 59.592 37.037 0.00 0.00 0.00 1.94
1887 2500 7.999450 ATAATCTACTACCTCCGTTCCTAAG 57.001 40.000 0.00 0.00 0.00 2.18
1888 2501 8.773033 AAATAATCTACTACCTCCGTTCCTAA 57.227 34.615 0.00 0.00 0.00 2.69
1891 2504 8.637099 ACTAAAATAATCTACTACCTCCGTTCC 58.363 37.037 0.00 0.00 0.00 3.62
1896 2509 8.175925 ACCGACTAAAATAATCTACTACCTCC 57.824 38.462 0.00 0.00 0.00 4.30
1985 2600 9.588096 TCTTCAGTCTAGTATGCTATATGGAAA 57.412 33.333 0.00 0.00 0.00 3.13
1986 2601 9.015367 GTCTTCAGTCTAGTATGCTATATGGAA 57.985 37.037 0.00 0.00 0.00 3.53
2008 2623 6.715280 TCCTTCTCAGAGCAAATATTGTCTT 58.285 36.000 0.00 0.00 0.00 3.01
2012 2633 6.596888 TCACTTCCTTCTCAGAGCAAATATTG 59.403 38.462 0.00 0.00 0.00 1.90
2014 2635 6.305272 TCACTTCCTTCTCAGAGCAAATAT 57.695 37.500 0.00 0.00 0.00 1.28
2029 2650 4.344679 TCATGCACCAAAAATTCACTTCCT 59.655 37.500 0.00 0.00 0.00 3.36
2038 2659 4.531732 ACACCCTAATCATGCACCAAAAAT 59.468 37.500 0.00 0.00 0.00 1.82
2082 2704 3.244561 ACCCAACCACTATGAACTGACAG 60.245 47.826 0.00 0.00 0.00 3.51
2091 2713 0.327924 TGGCTCACCCAACCACTATG 59.672 55.000 0.00 0.00 41.82 2.23
2112 2734 1.137086 GCGTGGAATAGGAGCTCTCAA 59.863 52.381 14.64 0.00 0.00 3.02
2141 2763 3.430790 CGACTGTCATAGCAGGAATTCCA 60.431 47.826 26.22 5.95 40.59 3.53
2173 2795 4.035102 AAGAGCTTCGGGGGCCAC 62.035 66.667 4.39 0.00 0.00 5.01
2196 2818 4.087892 GCAGGGAGCCGAGCTGAA 62.088 66.667 2.98 0.00 39.88 3.02
2216 2838 5.789643 TTCCAAATCTAAACAAGCAAGCT 57.210 34.783 0.00 0.00 0.00 3.74
2254 2876 9.675464 ACATTTTGAAAATCCATGAGCATATTT 57.325 25.926 0.00 0.00 0.00 1.40
2255 2877 9.675464 AACATTTTGAAAATCCATGAGCATATT 57.325 25.926 0.00 0.00 0.00 1.28
2256 2878 9.104965 CAACATTTTGAAAATCCATGAGCATAT 57.895 29.630 0.00 0.00 34.24 1.78
2257 2879 8.095792 ACAACATTTTGAAAATCCATGAGCATA 58.904 29.630 0.00 0.00 36.48 3.14
2258 2880 6.938030 ACAACATTTTGAAAATCCATGAGCAT 59.062 30.769 0.00 0.00 36.48 3.79
2259 2881 6.289834 ACAACATTTTGAAAATCCATGAGCA 58.710 32.000 0.00 0.00 36.48 4.26
2260 2882 6.790285 ACAACATTTTGAAAATCCATGAGC 57.210 33.333 0.00 0.00 36.48 4.26
2261 2883 9.865321 ATCTACAACATTTTGAAAATCCATGAG 57.135 29.630 0.00 0.00 36.48 2.90
2310 2932 9.971922 CCATGGATATTTTCTTAATTCCTGAAC 57.028 33.333 5.56 0.00 0.00 3.18
2311 2933 9.934784 TCCATGGATATTTTCTTAATTCCTGAA 57.065 29.630 11.44 0.00 0.00 3.02
2328 2950 8.877779 CGCAAATGTTTTAAAAATCCATGGATA 58.122 29.630 27.54 9.34 33.97 2.59
2329 2951 7.605691 TCGCAAATGTTTTAAAAATCCATGGAT 59.394 29.630 22.15 22.15 36.23 3.41
2330 2952 6.931281 TCGCAAATGTTTTAAAAATCCATGGA 59.069 30.769 18.88 18.88 0.00 3.41
2331 2953 7.126726 TCGCAAATGTTTTAAAAATCCATGG 57.873 32.000 4.97 4.97 0.00 3.66
2332 2954 9.609950 AAATCGCAAATGTTTTAAAAATCCATG 57.390 25.926 1.31 0.66 0.00 3.66
2334 2956 9.443283 CAAAATCGCAAATGTTTTAAAAATCCA 57.557 25.926 1.31 0.00 0.00 3.41
2335 2957 8.416424 GCAAAATCGCAAATGTTTTAAAAATCC 58.584 29.630 1.31 0.00 0.00 3.01
2336 2958 9.168353 AGCAAAATCGCAAATGTTTTAAAAATC 57.832 25.926 1.31 0.00 0.00 2.17
2337 2959 9.513727 AAGCAAAATCGCAAATGTTTTAAAAAT 57.486 22.222 1.31 0.00 0.00 1.82
2338 2960 8.902040 AAGCAAAATCGCAAATGTTTTAAAAA 57.098 23.077 1.31 0.00 0.00 1.94
2339 2961 8.902040 AAAGCAAAATCGCAAATGTTTTAAAA 57.098 23.077 0.00 0.00 0.00 1.52
2340 2962 9.988350 TTAAAGCAAAATCGCAAATGTTTTAAA 57.012 22.222 0.00 0.00 36.32 1.52
2341 2963 9.988350 TTTAAAGCAAAATCGCAAATGTTTTAA 57.012 22.222 0.00 0.00 36.97 1.52
2342 2964 9.643652 CTTTAAAGCAAAATCGCAAATGTTTTA 57.356 25.926 1.47 0.00 30.55 1.52
2343 2965 8.180920 ACTTTAAAGCAAAATCGCAAATGTTTT 58.819 25.926 15.24 0.00 32.29 2.43
2344 2966 7.693020 ACTTTAAAGCAAAATCGCAAATGTTT 58.307 26.923 15.24 0.00 0.00 2.83
2345 2967 7.224557 AGACTTTAAAGCAAAATCGCAAATGTT 59.775 29.630 15.24 0.00 0.00 2.71
2346 2968 6.701400 AGACTTTAAAGCAAAATCGCAAATGT 59.299 30.769 15.24 0.00 0.00 2.71
2347 2969 7.096106 TGAGACTTTAAAGCAAAATCGCAAATG 60.096 33.333 15.24 0.00 0.00 2.32
2348 2970 6.922957 TGAGACTTTAAAGCAAAATCGCAAAT 59.077 30.769 15.24 0.00 0.00 2.32
2349 2971 6.269315 TGAGACTTTAAAGCAAAATCGCAAA 58.731 32.000 15.24 0.00 0.00 3.68
2350 2972 5.826586 TGAGACTTTAAAGCAAAATCGCAA 58.173 33.333 15.24 0.00 0.00 4.85
2351 2973 5.431420 TGAGACTTTAAAGCAAAATCGCA 57.569 34.783 15.24 9.62 0.00 5.10
2352 2974 6.417930 AGTTTGAGACTTTAAAGCAAAATCGC 59.582 34.615 15.24 7.25 33.92 4.58
2353 2975 7.914537 AGTTTGAGACTTTAAAGCAAAATCG 57.085 32.000 15.24 0.00 33.92 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.