Multiple sequence alignment - TraesCS6D01G063600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G063600 chr6D 100.000 3473 0 0 1 3473 29931798 29935270 0.000000e+00 6414.0
1 TraesCS6D01G063600 chr6D 84.580 882 133 1 922 1803 29875413 29876291 0.000000e+00 872.0
2 TraesCS6D01G063600 chr6D 78.571 686 133 10 1166 1842 31266543 31265863 1.140000e-119 440.0
3 TraesCS6D01G063600 chr6D 81.627 332 60 1 1487 1817 30078547 30078216 1.230000e-69 274.0
4 TraesCS6D01G063600 chr6D 82.637 311 49 5 2294 2601 30077274 30076966 1.590000e-68 270.0
5 TraesCS6D01G063600 chr6D 78.158 380 42 13 1916 2263 31265504 31265134 1.630000e-48 204.0
6 TraesCS6D01G063600 chr6D 91.111 45 4 0 2175 2219 27846731 27846775 1.040000e-05 62.1
7 TraesCS6D01G063600 chr6A 95.378 1363 48 8 923 2273 32796685 32795326 0.000000e+00 2154.0
8 TraesCS6D01G063600 chr6A 91.734 617 40 2 2857 3473 32794936 32794331 0.000000e+00 846.0
9 TraesCS6D01G063600 chr6A 94.398 357 19 1 2273 2628 32795297 32794941 6.550000e-152 547.0
10 TraesCS6D01G063600 chr6A 85.874 446 59 3 922 1365 32865357 32864914 4.060000e-129 472.0
11 TraesCS6D01G063600 chr6A 76.381 724 122 31 1918 2599 32821591 32820875 9.230000e-91 344.0
12 TraesCS6D01G063600 chr6A 88.768 276 14 8 293 552 32797368 32797094 4.320000e-84 322.0
13 TraesCS6D01G063600 chr6A 80.800 375 64 6 1474 1842 32328184 32328556 1.580000e-73 287.0
14 TraesCS6D01G063600 chr6A 94.512 164 9 0 1 164 32797529 32797366 1.600000e-63 254.0
15 TraesCS6D01G063600 chr6A 76.762 525 77 21 2964 3473 47142290 47142784 5.750000e-63 252.0
16 TraesCS6D01G063600 chr6A 92.800 125 5 1 796 916 32797085 32796961 9.910000e-41 178.0
17 TraesCS6D01G063600 chr6A 78.595 299 41 15 3186 3473 46765797 46766083 3.560000e-40 176.0
18 TraesCS6D01G063600 chr6A 97.368 38 1 0 1474 1511 32859610 32859573 8.050000e-07 65.8
19 TraesCS6D01G063600 chr6B 93.416 972 64 0 923 1894 57726515 57725544 0.000000e+00 1441.0
20 TraesCS6D01G063600 chr6B 88.268 1074 64 27 2273 3329 57725237 57724209 0.000000e+00 1229.0
21 TraesCS6D01G063600 chr6B 78.791 943 157 25 925 1842 57452890 57453814 8.300000e-166 593.0
22 TraesCS6D01G063600 chr6B 84.696 575 88 0 923 1497 57910538 57909964 3.010000e-160 575.0
23 TraesCS6D01G063600 chr6B 86.679 548 30 5 1 526 57727294 57726768 5.030000e-158 568.0
24 TraesCS6D01G063600 chr6B 76.699 927 181 27 923 1842 81008267 81009165 1.870000e-132 483.0
25 TraesCS6D01G063600 chr6B 95.385 260 8 3 2018 2273 57725532 57725273 8.970000e-111 411.0
26 TraesCS6D01G063600 chr6B 73.290 921 213 23 924 1837 81667842 81666948 1.210000e-79 307.0
27 TraesCS6D01G063600 chr6B 77.273 528 85 23 2103 2601 57902973 57902452 9.490000e-71 278.0
28 TraesCS6D01G063600 chr6B 72.678 915 207 31 924 1829 80207690 80208570 7.390000e-67 265.0
29 TraesCS6D01G063600 chr6B 72.678 915 207 31 924 1829 80682826 80683706 7.390000e-67 265.0
30 TraesCS6D01G063600 chr6B 73.975 634 114 28 1916 2512 56391387 56390768 3.510000e-50 209.0
31 TraesCS6D01G063600 chr6B 80.952 273 44 7 1574 1843 57903689 57903422 3.510000e-50 209.0
32 TraesCS6D01G063600 chr6B 81.028 253 41 6 2351 2601 57453829 57454076 9.840000e-46 195.0
33 TraesCS6D01G063600 chr6B 74.374 519 88 24 2968 3473 80685393 80685879 2.750000e-41 180.0
34 TraesCS6D01G063600 chr6B 96.154 78 3 0 839 916 57726742 57726665 1.010000e-25 128.0
35 TraesCS6D01G063600 chr6B 89.474 57 5 1 1952 2007 56392750 56392694 1.730000e-08 71.3
36 TraesCS6D01G063600 chr6B 91.111 45 4 0 2175 2219 51733444 51733488 1.040000e-05 62.1
37 TraesCS6D01G063600 chrUn 73.724 921 204 28 924 1837 27284971 27284082 3.340000e-85 326.0
38 TraesCS6D01G063600 chrUn 79.339 484 77 17 2294 2765 27040711 27041183 5.590000e-83 318.0
39 TraesCS6D01G063600 chrUn 83.077 260 31 8 2514 2761 27282769 27282511 1.250000e-54 224.0
40 TraesCS6D01G063600 chr1D 83.408 223 36 1 2379 2600 478062482 478062704 4.540000e-49 206.0
41 TraesCS6D01G063600 chr5B 73.770 244 41 15 1053 1280 595653136 595653372 1.340000e-09 75.0
42 TraesCS6D01G063600 chr5A 90.909 44 4 0 1230 1273 606154048 606154091 3.740000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G063600 chr6D 29931798 29935270 3472 False 6414.000000 6414 100.000000 1 3473 1 chr6D.!!$F3 3472
1 TraesCS6D01G063600 chr6D 29875413 29876291 878 False 872.000000 872 84.580000 922 1803 1 chr6D.!!$F2 881
2 TraesCS6D01G063600 chr6D 31265134 31266543 1409 True 322.000000 440 78.364500 1166 2263 2 chr6D.!!$R2 1097
3 TraesCS6D01G063600 chr6D 30076966 30078547 1581 True 272.000000 274 82.132000 1487 2601 2 chr6D.!!$R1 1114
4 TraesCS6D01G063600 chr6A 32794331 32797529 3198 True 716.833333 2154 92.931667 1 3473 6 chr6A.!!$R4 3472
5 TraesCS6D01G063600 chr6A 32820875 32821591 716 True 344.000000 344 76.381000 1918 2599 1 chr6A.!!$R1 681
6 TraesCS6D01G063600 chr6B 57724209 57727294 3085 True 755.400000 1441 91.980400 1 3329 5 chr6B.!!$R4 3328
7 TraesCS6D01G063600 chr6B 57909964 57910538 574 True 575.000000 575 84.696000 923 1497 1 chr6B.!!$R1 574
8 TraesCS6D01G063600 chr6B 81008267 81009165 898 False 483.000000 483 76.699000 923 1842 1 chr6B.!!$F3 919
9 TraesCS6D01G063600 chr6B 57452890 57454076 1186 False 394.000000 593 79.909500 925 2601 2 chr6B.!!$F4 1676
10 TraesCS6D01G063600 chr6B 81666948 81667842 894 True 307.000000 307 73.290000 924 1837 1 chr6B.!!$R2 913
11 TraesCS6D01G063600 chr6B 80207690 80208570 880 False 265.000000 265 72.678000 924 1829 1 chr6B.!!$F2 905
12 TraesCS6D01G063600 chr6B 57902452 57903689 1237 True 243.500000 278 79.112500 1574 2601 2 chr6B.!!$R5 1027
13 TraesCS6D01G063600 chr6B 80682826 80685879 3053 False 222.500000 265 73.526000 924 3473 2 chr6B.!!$F5 2549
14 TraesCS6D01G063600 chrUn 27282511 27284971 2460 True 275.000000 326 78.400500 924 2761 2 chrUn.!!$R1 1837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 183 0.035056 CCTTCAGGACCATGACCACC 60.035 60.0 10.59 1.61 37.39 4.61 F
241 248 0.104934 ACCCCACTCAAGACAGGTCT 60.105 55.0 0.00 0.00 42.75 3.85 F
285 292 0.310854 CTTGGTGAAAACGACCCAGC 59.689 55.0 0.00 0.00 31.84 4.85 F
286 293 0.394488 TTGGTGAAAACGACCCAGCA 60.394 50.0 0.00 0.00 36.65 4.41 F
764 897 0.443869 CGGATTCCAAGCTTCACACG 59.556 55.0 0.00 0.00 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1294 1709 2.625790 TGAAAATGAACAAACCCTCGGG 59.374 45.455 0.0 0.0 42.03 5.14 R
1716 2140 2.746362 GAGCTTCTTGAACCACCATGAG 59.254 50.000 0.0 0.0 0.00 2.90 R
1971 2733 4.604976 CATATTTCAGTAGGCAAGCAAGC 58.395 43.478 0.0 0.0 0.00 4.01 R
2096 2892 5.534654 TGCAGTTGGTTCAAGCTAACTTTAT 59.465 36.000 0.0 0.0 32.29 1.40 R
2481 3970 2.173669 GTGCCCATCGTGTCATCCG 61.174 63.158 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 90 2.440065 CATAAGCCCTTGCCCGCA 60.440 61.111 0.00 0.00 38.69 5.69
161 168 5.734720 TCCATCAGAATCTTGTACACCTTC 58.265 41.667 0.00 0.00 0.00 3.46
162 169 5.248248 TCCATCAGAATCTTGTACACCTTCA 59.752 40.000 0.00 0.00 0.00 3.02
163 170 5.583854 CCATCAGAATCTTGTACACCTTCAG 59.416 44.000 0.00 0.00 0.00 3.02
164 171 5.152623 TCAGAATCTTGTACACCTTCAGG 57.847 43.478 0.00 0.00 42.17 3.86
165 172 4.838423 TCAGAATCTTGTACACCTTCAGGA 59.162 41.667 0.00 0.00 38.94 3.86
166 173 4.932200 CAGAATCTTGTACACCTTCAGGAC 59.068 45.833 0.00 0.00 38.94 3.85
167 174 3.983044 ATCTTGTACACCTTCAGGACC 57.017 47.619 0.00 0.00 38.94 4.46
168 175 2.684943 TCTTGTACACCTTCAGGACCA 58.315 47.619 0.00 0.00 38.94 4.02
169 176 3.248024 TCTTGTACACCTTCAGGACCAT 58.752 45.455 0.00 0.00 38.94 3.55
170 177 3.007940 TCTTGTACACCTTCAGGACCATG 59.992 47.826 0.00 0.00 38.94 3.66
171 178 2.615391 TGTACACCTTCAGGACCATGA 58.385 47.619 0.00 0.00 38.94 3.07
172 179 2.301870 TGTACACCTTCAGGACCATGAC 59.698 50.000 0.00 0.00 38.94 3.06
173 180 0.693049 ACACCTTCAGGACCATGACC 59.307 55.000 0.00 0.00 38.94 4.02
174 181 0.692476 CACCTTCAGGACCATGACCA 59.308 55.000 0.00 0.00 38.94 4.02
175 182 0.693049 ACCTTCAGGACCATGACCAC 59.307 55.000 0.00 0.00 38.94 4.16
176 183 0.035056 CCTTCAGGACCATGACCACC 60.035 60.000 10.59 1.61 37.39 4.61
177 184 0.692476 CTTCAGGACCATGACCACCA 59.308 55.000 10.59 0.00 0.00 4.17
178 185 0.400213 TTCAGGACCATGACCACCAC 59.600 55.000 10.59 0.00 0.00 4.16
179 186 0.473694 TCAGGACCATGACCACCACT 60.474 55.000 10.59 0.00 0.00 4.00
180 187 0.401738 CAGGACCATGACCACCACTT 59.598 55.000 10.59 0.00 0.00 3.16
181 188 0.693049 AGGACCATGACCACCACTTC 59.307 55.000 10.59 0.00 0.00 3.01
182 189 0.322546 GGACCATGACCACCACTTCC 60.323 60.000 0.00 0.00 0.00 3.46
183 190 0.322546 GACCATGACCACCACTTCCC 60.323 60.000 0.00 0.00 0.00 3.97
184 191 1.000896 CCATGACCACCACTTCCCC 60.001 63.158 0.00 0.00 0.00 4.81
185 192 1.377202 CATGACCACCACTTCCCCG 60.377 63.158 0.00 0.00 0.00 5.73
186 193 1.537889 ATGACCACCACTTCCCCGA 60.538 57.895 0.00 0.00 0.00 5.14
187 194 1.838073 ATGACCACCACTTCCCCGAC 61.838 60.000 0.00 0.00 0.00 4.79
188 195 3.246880 ACCACCACTTCCCCGACC 61.247 66.667 0.00 0.00 0.00 4.79
189 196 2.928396 CCACCACTTCCCCGACCT 60.928 66.667 0.00 0.00 0.00 3.85
190 197 2.663196 CACCACTTCCCCGACCTC 59.337 66.667 0.00 0.00 0.00 3.85
191 198 1.913762 CACCACTTCCCCGACCTCT 60.914 63.158 0.00 0.00 0.00 3.69
192 199 1.913762 ACCACTTCCCCGACCTCTG 60.914 63.158 0.00 0.00 0.00 3.35
193 200 2.266055 CACTTCCCCGACCTCTGC 59.734 66.667 0.00 0.00 0.00 4.26
194 201 2.203788 ACTTCCCCGACCTCTGCA 60.204 61.111 0.00 0.00 0.00 4.41
195 202 1.613630 ACTTCCCCGACCTCTGCAT 60.614 57.895 0.00 0.00 0.00 3.96
196 203 1.144936 CTTCCCCGACCTCTGCATC 59.855 63.158 0.00 0.00 0.00 3.91
197 204 1.306141 TTCCCCGACCTCTGCATCT 60.306 57.895 0.00 0.00 0.00 2.90
198 205 1.617018 TTCCCCGACCTCTGCATCTG 61.617 60.000 0.00 0.00 0.00 2.90
199 206 2.202987 CCCGACCTCTGCATCTGC 60.203 66.667 0.00 0.00 42.50 4.26
200 207 2.202987 CCGACCTCTGCATCTGCC 60.203 66.667 0.00 0.00 41.18 4.85
201 208 2.202987 CGACCTCTGCATCTGCCC 60.203 66.667 0.00 0.00 41.18 5.36
202 209 2.993008 GACCTCTGCATCTGCCCA 59.007 61.111 0.00 0.00 41.18 5.36
203 210 1.451028 GACCTCTGCATCTGCCCAC 60.451 63.158 0.00 0.00 41.18 4.61
204 211 2.189191 GACCTCTGCATCTGCCCACA 62.189 60.000 0.00 0.00 41.18 4.17
205 212 1.226542 CCTCTGCATCTGCCCACAT 59.773 57.895 0.00 0.00 41.18 3.21
206 213 0.818445 CCTCTGCATCTGCCCACATC 60.818 60.000 0.00 0.00 41.18 3.06
207 214 0.180642 CTCTGCATCTGCCCACATCT 59.819 55.000 0.00 0.00 41.18 2.90
208 215 0.107361 TCTGCATCTGCCCACATCTG 60.107 55.000 0.00 0.00 41.18 2.90
209 216 1.725557 CTGCATCTGCCCACATCTGC 61.726 60.000 0.00 0.00 41.18 4.26
210 217 1.453379 GCATCTGCCCACATCTGCT 60.453 57.895 0.00 0.00 32.90 4.24
211 218 0.179037 GCATCTGCCCACATCTGCTA 60.179 55.000 0.00 0.00 32.90 3.49
212 219 1.880271 CATCTGCCCACATCTGCTAG 58.120 55.000 0.00 0.00 0.00 3.42
213 220 0.763652 ATCTGCCCACATCTGCTAGG 59.236 55.000 0.00 0.00 0.00 3.02
214 221 0.325577 TCTGCCCACATCTGCTAGGA 60.326 55.000 0.00 0.00 0.00 2.94
215 222 0.763652 CTGCCCACATCTGCTAGGAT 59.236 55.000 0.00 0.00 0.00 3.24
216 223 1.973515 CTGCCCACATCTGCTAGGATA 59.026 52.381 0.00 0.00 0.00 2.59
217 224 2.369860 CTGCCCACATCTGCTAGGATAA 59.630 50.000 0.00 0.00 0.00 1.75
218 225 2.777114 TGCCCACATCTGCTAGGATAAA 59.223 45.455 0.00 0.00 0.00 1.40
219 226 3.201930 TGCCCACATCTGCTAGGATAAAA 59.798 43.478 0.00 0.00 0.00 1.52
220 227 4.141181 TGCCCACATCTGCTAGGATAAAAT 60.141 41.667 0.00 0.00 0.00 1.82
221 228 4.829492 GCCCACATCTGCTAGGATAAAATT 59.171 41.667 0.00 0.00 0.00 1.82
222 229 6.003950 GCCCACATCTGCTAGGATAAAATTA 58.996 40.000 0.00 0.00 0.00 1.40
223 230 6.072452 GCCCACATCTGCTAGGATAAAATTAC 60.072 42.308 0.00 0.00 0.00 1.89
224 231 6.431234 CCCACATCTGCTAGGATAAAATTACC 59.569 42.308 0.00 0.00 0.00 2.85
225 232 6.431234 CCACATCTGCTAGGATAAAATTACCC 59.569 42.308 0.00 0.00 0.00 3.69
226 233 6.431234 CACATCTGCTAGGATAAAATTACCCC 59.569 42.308 0.00 0.00 0.00 4.95
227 234 6.102615 ACATCTGCTAGGATAAAATTACCCCA 59.897 38.462 0.00 0.00 0.00 4.96
228 235 5.937111 TCTGCTAGGATAAAATTACCCCAC 58.063 41.667 0.00 0.00 0.00 4.61
229 236 5.670361 TCTGCTAGGATAAAATTACCCCACT 59.330 40.000 0.00 0.00 0.00 4.00
230 237 5.937111 TGCTAGGATAAAATTACCCCACTC 58.063 41.667 0.00 0.00 0.00 3.51
231 238 5.430417 TGCTAGGATAAAATTACCCCACTCA 59.570 40.000 0.00 0.00 0.00 3.41
232 239 6.069323 TGCTAGGATAAAATTACCCCACTCAA 60.069 38.462 0.00 0.00 0.00 3.02
233 240 6.486993 GCTAGGATAAAATTACCCCACTCAAG 59.513 42.308 0.00 0.00 0.00 3.02
234 241 6.652205 AGGATAAAATTACCCCACTCAAGA 57.348 37.500 0.00 0.00 0.00 3.02
235 242 6.424032 AGGATAAAATTACCCCACTCAAGAC 58.576 40.000 0.00 0.00 0.00 3.01
236 243 6.011981 AGGATAAAATTACCCCACTCAAGACA 60.012 38.462 0.00 0.00 0.00 3.41
237 244 6.318900 GGATAAAATTACCCCACTCAAGACAG 59.681 42.308 0.00 0.00 0.00 3.51
238 245 3.721087 AATTACCCCACTCAAGACAGG 57.279 47.619 0.00 0.00 0.00 4.00
239 246 2.112279 TTACCCCACTCAAGACAGGT 57.888 50.000 0.00 0.00 0.00 4.00
240 247 1.640917 TACCCCACTCAAGACAGGTC 58.359 55.000 0.00 0.00 0.00 3.85
241 248 0.104934 ACCCCACTCAAGACAGGTCT 60.105 55.000 0.00 0.00 42.75 3.85
253 260 1.512926 ACAGGTCTTGTCATGTTCGC 58.487 50.000 0.00 0.00 33.87 4.70
254 261 0.798776 CAGGTCTTGTCATGTTCGCC 59.201 55.000 0.00 0.00 0.00 5.54
255 262 0.670546 AGGTCTTGTCATGTTCGCCG 60.671 55.000 0.00 0.00 0.00 6.46
256 263 0.949105 GGTCTTGTCATGTTCGCCGT 60.949 55.000 0.00 0.00 0.00 5.68
257 264 0.438830 GTCTTGTCATGTTCGCCGTC 59.561 55.000 0.00 0.00 0.00 4.79
258 265 1.006825 TCTTGTCATGTTCGCCGTCG 61.007 55.000 0.00 0.00 0.00 5.12
259 266 2.548587 CTTGTCATGTTCGCCGTCGC 62.549 60.000 0.00 0.00 35.26 5.19
260 267 3.849953 GTCATGTTCGCCGTCGCC 61.850 66.667 0.00 0.00 35.26 5.54
261 268 4.365505 TCATGTTCGCCGTCGCCA 62.366 61.111 0.00 0.00 35.26 5.69
262 269 4.147322 CATGTTCGCCGTCGCCAC 62.147 66.667 0.00 0.00 35.26 5.01
263 270 4.673298 ATGTTCGCCGTCGCCACA 62.673 61.111 0.00 0.00 34.59 4.17
264 271 3.950794 ATGTTCGCCGTCGCCACAT 62.951 57.895 0.00 0.00 35.71 3.21
265 272 3.419759 GTTCGCCGTCGCCACATT 61.420 61.111 0.00 0.00 35.26 2.71
266 273 3.115892 TTCGCCGTCGCCACATTC 61.116 61.111 0.00 0.00 35.26 2.67
267 274 3.583276 TTCGCCGTCGCCACATTCT 62.583 57.895 0.00 0.00 35.26 2.40
268 275 3.118454 CGCCGTCGCCACATTCTT 61.118 61.111 0.00 0.00 0.00 2.52
269 276 2.480555 GCCGTCGCCACATTCTTG 59.519 61.111 0.00 0.00 0.00 3.02
270 277 3.039202 GCCGTCGCCACATTCTTGG 62.039 63.158 0.00 0.00 39.98 3.61
271 278 1.671054 CCGTCGCCACATTCTTGGT 60.671 57.895 0.00 0.00 39.09 3.67
272 279 1.497278 CGTCGCCACATTCTTGGTG 59.503 57.895 0.00 0.00 46.91 4.17
278 285 2.393764 GCCACATTCTTGGTGAAAACG 58.606 47.619 0.00 0.00 39.09 3.60
279 286 2.034053 GCCACATTCTTGGTGAAAACGA 59.966 45.455 0.00 0.00 39.09 3.85
280 287 3.628017 CCACATTCTTGGTGAAAACGAC 58.372 45.455 0.00 0.00 38.54 4.34
281 288 3.550030 CCACATTCTTGGTGAAAACGACC 60.550 47.826 0.00 0.00 38.54 4.79
282 289 2.621526 ACATTCTTGGTGAAAACGACCC 59.378 45.455 0.00 0.00 38.29 4.46
283 290 2.421751 TTCTTGGTGAAAACGACCCA 57.578 45.000 0.00 0.00 31.84 4.51
284 291 1.961793 TCTTGGTGAAAACGACCCAG 58.038 50.000 0.00 0.00 31.84 4.45
285 292 0.310854 CTTGGTGAAAACGACCCAGC 59.689 55.000 0.00 0.00 31.84 4.85
286 293 0.394488 TTGGTGAAAACGACCCAGCA 60.394 50.000 0.00 0.00 36.65 4.41
287 294 0.817634 TGGTGAAAACGACCCAGCAG 60.818 55.000 0.00 0.00 33.98 4.24
288 295 0.534203 GGTGAAAACGACCCAGCAGA 60.534 55.000 0.00 0.00 0.00 4.26
289 296 0.586802 GTGAAAACGACCCAGCAGAC 59.413 55.000 0.00 0.00 0.00 3.51
290 297 0.534203 TGAAAACGACCCAGCAGACC 60.534 55.000 0.00 0.00 0.00 3.85
291 298 1.566018 GAAAACGACCCAGCAGACCG 61.566 60.000 0.00 0.00 0.00 4.79
347 464 3.314693 TCACTTGGTACCACTCCTTCTT 58.685 45.455 16.04 0.00 0.00 2.52
358 475 3.574396 CCACTCCTTCTTTTCCCCTTTTC 59.426 47.826 0.00 0.00 0.00 2.29
391 524 5.769662 ACAAACCAACATTCATCTTAGCTCA 59.230 36.000 0.00 0.00 0.00 4.26
431 564 4.691216 ACCTCGAGAATTTCTAAACACAGC 59.309 41.667 15.71 0.00 0.00 4.40
435 568 4.670221 CGAGAATTTCTAAACACAGCTGGC 60.670 45.833 19.93 0.00 0.00 4.85
439 572 4.503741 TTTCTAAACACAGCTGGCAATC 57.496 40.909 19.93 0.00 0.00 2.67
479 612 4.487714 TTTCTCCCATGGATCTACACAC 57.512 45.455 15.22 0.00 0.00 3.82
526 659 6.595682 ACAATTGTCTATTAGCCTATGCACT 58.404 36.000 4.92 0.00 41.13 4.40
552 685 3.350833 GCCCAGACTTGTCAAGAATCAT 58.649 45.455 19.53 0.00 0.00 2.45
553 686 3.128242 GCCCAGACTTGTCAAGAATCATG 59.872 47.826 19.53 9.23 0.00 3.07
554 687 3.693085 CCCAGACTTGTCAAGAATCATGG 59.307 47.826 19.53 16.10 0.00 3.66
555 688 4.566278 CCCAGACTTGTCAAGAATCATGGA 60.566 45.833 19.53 0.00 0.00 3.41
556 689 4.394300 CCAGACTTGTCAAGAATCATGGAC 59.606 45.833 19.53 0.00 0.00 4.02
559 692 4.583871 ACTTGTCAAGAATCATGGACCTC 58.416 43.478 19.53 0.00 0.00 3.85
560 693 3.251479 TGTCAAGAATCATGGACCTCG 57.749 47.619 0.00 0.00 0.00 4.63
561 694 2.093500 TGTCAAGAATCATGGACCTCGG 60.093 50.000 0.00 0.00 0.00 4.63
562 695 2.168521 GTCAAGAATCATGGACCTCGGA 59.831 50.000 0.00 0.00 0.00 4.55
563 696 3.041211 TCAAGAATCATGGACCTCGGAT 58.959 45.455 0.00 0.00 0.00 4.18
564 697 3.455910 TCAAGAATCATGGACCTCGGATT 59.544 43.478 0.00 5.80 32.97 3.01
565 698 4.653801 TCAAGAATCATGGACCTCGGATTA 59.346 41.667 0.00 0.00 30.60 1.75
566 699 4.608948 AGAATCATGGACCTCGGATTAC 57.391 45.455 0.00 2.47 30.60 1.89
567 700 3.005897 AGAATCATGGACCTCGGATTACG 59.994 47.826 0.00 0.00 46.11 3.18
582 715 5.847670 GGATTACGAAAGCCATCATACTC 57.152 43.478 0.00 0.00 41.05 2.59
583 716 4.691216 GGATTACGAAAGCCATCATACTCC 59.309 45.833 0.00 0.00 41.05 3.85
584 717 5.511545 GGATTACGAAAGCCATCATACTCCT 60.512 44.000 0.00 0.00 41.05 3.69
585 718 3.460857 ACGAAAGCCATCATACTCCTC 57.539 47.619 0.00 0.00 0.00 3.71
586 719 2.766263 ACGAAAGCCATCATACTCCTCA 59.234 45.455 0.00 0.00 0.00 3.86
587 720 3.197766 ACGAAAGCCATCATACTCCTCAA 59.802 43.478 0.00 0.00 0.00 3.02
588 721 4.141620 ACGAAAGCCATCATACTCCTCAAT 60.142 41.667 0.00 0.00 0.00 2.57
589 722 4.212847 CGAAAGCCATCATACTCCTCAATG 59.787 45.833 0.00 0.00 0.00 2.82
590 723 3.137446 AGCCATCATACTCCTCAATGC 57.863 47.619 0.00 0.00 0.00 3.56
591 724 2.709934 AGCCATCATACTCCTCAATGCT 59.290 45.455 0.00 0.00 0.00 3.79
592 725 3.137913 AGCCATCATACTCCTCAATGCTT 59.862 43.478 0.00 0.00 0.00 3.91
593 726 3.252701 GCCATCATACTCCTCAATGCTTG 59.747 47.826 0.00 0.00 0.00 4.01
594 727 4.711399 CCATCATACTCCTCAATGCTTGA 58.289 43.478 0.00 0.00 38.17 3.02
595 728 5.314529 CCATCATACTCCTCAATGCTTGAT 58.685 41.667 0.08 0.00 39.30 2.57
596 729 5.768662 CCATCATACTCCTCAATGCTTGATT 59.231 40.000 0.08 0.00 39.30 2.57
597 730 6.264744 CCATCATACTCCTCAATGCTTGATTT 59.735 38.462 0.08 0.00 39.30 2.17
598 731 6.932356 TCATACTCCTCAATGCTTGATTTC 57.068 37.500 0.08 0.00 39.30 2.17
599 732 6.656902 TCATACTCCTCAATGCTTGATTTCT 58.343 36.000 0.08 0.00 39.30 2.52
600 733 7.795047 TCATACTCCTCAATGCTTGATTTCTA 58.205 34.615 0.08 0.00 39.30 2.10
601 734 8.267183 TCATACTCCTCAATGCTTGATTTCTAA 58.733 33.333 0.08 0.00 39.30 2.10
602 735 9.064706 CATACTCCTCAATGCTTGATTTCTAAT 57.935 33.333 0.08 0.00 39.30 1.73
605 738 9.466497 ACTCCTCAATGCTTGATTTCTAATAAA 57.534 29.630 0.08 0.00 39.30 1.40
606 739 9.947669 CTCCTCAATGCTTGATTTCTAATAAAG 57.052 33.333 0.08 0.00 39.30 1.85
607 740 9.685276 TCCTCAATGCTTGATTTCTAATAAAGA 57.315 29.630 1.48 0.00 39.30 2.52
611 744 9.859427 CAATGCTTGATTTCTAATAAAGAACCA 57.141 29.630 1.48 0.00 44.02 3.67
613 746 8.055279 TGCTTGATTTCTAATAAAGAACCAGG 57.945 34.615 1.48 0.00 44.02 4.45
614 747 7.888021 TGCTTGATTTCTAATAAAGAACCAGGA 59.112 33.333 0.00 0.00 44.02 3.86
615 748 8.907885 GCTTGATTTCTAATAAAGAACCAGGAT 58.092 33.333 0.00 0.00 44.02 3.24
618 751 9.838339 TGATTTCTAATAAAGAACCAGGATCTC 57.162 33.333 0.00 0.00 44.02 2.75
619 752 9.838339 GATTTCTAATAAAGAACCAGGATCTCA 57.162 33.333 0.00 0.00 44.02 3.27
624 757 9.495572 CTAATAAAGAACCAGGATCTCATTACC 57.504 37.037 0.00 0.00 0.00 2.85
625 758 5.779241 AAAGAACCAGGATCTCATTACCA 57.221 39.130 0.00 0.00 0.00 3.25
626 759 5.983333 AAGAACCAGGATCTCATTACCAT 57.017 39.130 0.00 0.00 0.00 3.55
627 760 7.451731 AAAGAACCAGGATCTCATTACCATA 57.548 36.000 0.00 0.00 0.00 2.74
628 761 6.426646 AGAACCAGGATCTCATTACCATAC 57.573 41.667 0.00 0.00 0.00 2.39
629 762 5.308237 AGAACCAGGATCTCATTACCATACC 59.692 44.000 0.00 0.00 0.00 2.73
630 763 4.832492 ACCAGGATCTCATTACCATACCT 58.168 43.478 0.00 0.00 0.00 3.08
631 764 5.227593 ACCAGGATCTCATTACCATACCTT 58.772 41.667 0.00 0.00 0.00 3.50
632 765 5.672194 ACCAGGATCTCATTACCATACCTTT 59.328 40.000 0.00 0.00 0.00 3.11
633 766 6.849697 ACCAGGATCTCATTACCATACCTTTA 59.150 38.462 0.00 0.00 0.00 1.85
634 767 7.517604 ACCAGGATCTCATTACCATACCTTTAT 59.482 37.037 0.00 0.00 0.00 1.40
635 768 8.386264 CCAGGATCTCATTACCATACCTTTATT 58.614 37.037 0.00 0.00 0.00 1.40
636 769 9.799106 CAGGATCTCATTACCATACCTTTATTT 57.201 33.333 0.00 0.00 0.00 1.40
638 771 9.793259 GGATCTCATTACCATACCTTTATTTCA 57.207 33.333 0.00 0.00 0.00 2.69
646 779 9.983024 TTACCATACCTTTATTTCAATCTCCAA 57.017 29.630 0.00 0.00 0.00 3.53
647 780 8.525290 ACCATACCTTTATTTCAATCTCCAAG 57.475 34.615 0.00 0.00 0.00 3.61
648 781 8.336235 ACCATACCTTTATTTCAATCTCCAAGA 58.664 33.333 0.00 0.00 0.00 3.02
649 782 9.359653 CCATACCTTTATTTCAATCTCCAAGAT 57.640 33.333 0.00 0.00 36.28 2.40
653 786 9.190317 ACCTTTATTTCAATCTCCAAGATAACC 57.810 33.333 0.00 0.00 32.89 2.85
654 787 9.189156 CCTTTATTTCAATCTCCAAGATAACCA 57.811 33.333 0.00 0.00 32.89 3.67
658 791 8.655935 ATTTCAATCTCCAAGATAACCAAACT 57.344 30.769 0.00 0.00 32.89 2.66
659 792 7.687941 TTCAATCTCCAAGATAACCAAACTC 57.312 36.000 0.00 0.00 32.89 3.01
660 793 6.778821 TCAATCTCCAAGATAACCAAACTCA 58.221 36.000 0.00 0.00 32.89 3.41
661 794 6.655003 TCAATCTCCAAGATAACCAAACTCAC 59.345 38.462 0.00 0.00 32.89 3.51
662 795 5.560722 TCTCCAAGATAACCAAACTCACA 57.439 39.130 0.00 0.00 0.00 3.58
663 796 5.935945 TCTCCAAGATAACCAAACTCACAA 58.064 37.500 0.00 0.00 0.00 3.33
664 797 5.763204 TCTCCAAGATAACCAAACTCACAAC 59.237 40.000 0.00 0.00 0.00 3.32
665 798 4.825085 TCCAAGATAACCAAACTCACAACC 59.175 41.667 0.00 0.00 0.00 3.77
666 799 4.320202 CCAAGATAACCAAACTCACAACCG 60.320 45.833 0.00 0.00 0.00 4.44
667 800 4.081322 AGATAACCAAACTCACAACCGT 57.919 40.909 0.00 0.00 0.00 4.83
668 801 3.813166 AGATAACCAAACTCACAACCGTG 59.187 43.478 0.00 0.00 45.08 4.94
696 829 9.447157 ACAAATTTTGTTCAATCTTCCTTCAAA 57.553 25.926 8.97 0.00 42.22 2.69
699 832 7.518731 TTTTGTTCAATCTTCCTTCAAAACG 57.481 32.000 0.00 0.00 31.50 3.60
700 833 5.181690 TGTTCAATCTTCCTTCAAAACGG 57.818 39.130 0.00 0.00 0.00 4.44
701 834 3.915437 TCAATCTTCCTTCAAAACGGC 57.085 42.857 0.00 0.00 0.00 5.68
702 835 3.218453 TCAATCTTCCTTCAAAACGGCA 58.782 40.909 0.00 0.00 0.00 5.69
703 836 3.634448 TCAATCTTCCTTCAAAACGGCAA 59.366 39.130 0.00 0.00 0.00 4.52
704 837 4.098654 TCAATCTTCCTTCAAAACGGCAAA 59.901 37.500 0.00 0.00 0.00 3.68
705 838 4.664150 ATCTTCCTTCAAAACGGCAAAA 57.336 36.364 0.00 0.00 0.00 2.44
706 839 4.457834 TCTTCCTTCAAAACGGCAAAAA 57.542 36.364 0.00 0.00 0.00 1.94
707 840 4.177783 TCTTCCTTCAAAACGGCAAAAAC 58.822 39.130 0.00 0.00 0.00 2.43
708 841 3.594603 TCCTTCAAAACGGCAAAAACA 57.405 38.095 0.00 0.00 0.00 2.83
709 842 4.130286 TCCTTCAAAACGGCAAAAACAT 57.870 36.364 0.00 0.00 0.00 2.71
710 843 4.116238 TCCTTCAAAACGGCAAAAACATC 58.884 39.130 0.00 0.00 0.00 3.06
711 844 4.119136 CCTTCAAAACGGCAAAAACATCT 58.881 39.130 0.00 0.00 0.00 2.90
712 845 4.570369 CCTTCAAAACGGCAAAAACATCTT 59.430 37.500 0.00 0.00 0.00 2.40
713 846 5.751028 CCTTCAAAACGGCAAAAACATCTTA 59.249 36.000 0.00 0.00 0.00 2.10
714 847 6.423604 CCTTCAAAACGGCAAAAACATCTTAT 59.576 34.615 0.00 0.00 0.00 1.73
715 848 7.596995 CCTTCAAAACGGCAAAAACATCTTATA 59.403 33.333 0.00 0.00 0.00 0.98
716 849 9.139174 CTTCAAAACGGCAAAAACATCTTATAT 57.861 29.630 0.00 0.00 0.00 0.86
717 850 9.482627 TTCAAAACGGCAAAAACATCTTATATT 57.517 25.926 0.00 0.00 0.00 1.28
718 851 9.482627 TCAAAACGGCAAAAACATCTTATATTT 57.517 25.926 0.00 0.00 0.00 1.40
721 854 9.482627 AAACGGCAAAAACATCTTATATTTTGA 57.517 25.926 12.49 0.00 42.48 2.69
722 855 8.687824 ACGGCAAAAACATCTTATATTTTGAG 57.312 30.769 12.49 8.37 42.48 3.02
723 856 8.519526 ACGGCAAAAACATCTTATATTTTGAGA 58.480 29.630 12.49 0.00 42.48 3.27
724 857 9.520204 CGGCAAAAACATCTTATATTTTGAGAT 57.480 29.630 12.49 0.00 42.48 2.75
745 878 7.483580 AGATGGGTACTATACATCTTTAGCC 57.516 40.000 13.34 0.00 46.64 3.93
746 879 5.717078 TGGGTACTATACATCTTTAGCCG 57.283 43.478 0.00 0.00 33.77 5.52
747 880 4.525487 TGGGTACTATACATCTTTAGCCGG 59.475 45.833 0.00 0.00 33.77 6.13
748 881 4.768968 GGGTACTATACATCTTTAGCCGGA 59.231 45.833 5.05 0.00 0.00 5.14
749 882 5.421374 GGGTACTATACATCTTTAGCCGGAT 59.579 44.000 5.05 0.00 0.00 4.18
750 883 6.070938 GGGTACTATACATCTTTAGCCGGATT 60.071 42.308 5.05 0.00 0.00 3.01
751 884 7.034397 GGTACTATACATCTTTAGCCGGATTC 58.966 42.308 5.05 0.00 0.00 2.52
752 885 6.038997 ACTATACATCTTTAGCCGGATTCC 57.961 41.667 5.05 0.00 0.00 3.01
753 886 4.974645 ATACATCTTTAGCCGGATTCCA 57.025 40.909 5.05 0.00 0.00 3.53
754 887 3.644966 ACATCTTTAGCCGGATTCCAA 57.355 42.857 5.05 0.00 0.00 3.53
755 888 3.545703 ACATCTTTAGCCGGATTCCAAG 58.454 45.455 5.05 2.20 0.00 3.61
756 889 2.038387 TCTTTAGCCGGATTCCAAGC 57.962 50.000 5.05 5.07 0.00 4.01
757 890 1.559682 TCTTTAGCCGGATTCCAAGCT 59.440 47.619 18.36 18.36 36.81 3.74
758 891 2.026262 TCTTTAGCCGGATTCCAAGCTT 60.026 45.455 19.25 0.00 35.02 3.74
759 892 2.038387 TTAGCCGGATTCCAAGCTTC 57.962 50.000 19.25 0.00 35.02 3.86
760 893 0.908910 TAGCCGGATTCCAAGCTTCA 59.091 50.000 19.25 3.46 35.02 3.02
761 894 0.678048 AGCCGGATTCCAAGCTTCAC 60.678 55.000 5.05 0.00 29.95 3.18
762 895 0.960364 GCCGGATTCCAAGCTTCACA 60.960 55.000 5.05 0.00 0.00 3.58
763 896 0.804989 CCGGATTCCAAGCTTCACAC 59.195 55.000 0.00 0.00 0.00 3.82
764 897 0.443869 CGGATTCCAAGCTTCACACG 59.556 55.000 0.00 0.00 0.00 4.49
765 898 0.804989 GGATTCCAAGCTTCACACGG 59.195 55.000 0.00 0.00 0.00 4.94
766 899 1.523758 GATTCCAAGCTTCACACGGT 58.476 50.000 0.00 0.00 0.00 4.83
767 900 1.880027 GATTCCAAGCTTCACACGGTT 59.120 47.619 0.00 0.00 0.00 4.44
768 901 2.623878 TTCCAAGCTTCACACGGTTA 57.376 45.000 0.00 0.00 0.00 2.85
769 902 2.851263 TCCAAGCTTCACACGGTTAT 57.149 45.000 0.00 0.00 0.00 1.89
770 903 2.695359 TCCAAGCTTCACACGGTTATC 58.305 47.619 0.00 0.00 0.00 1.75
771 904 1.393539 CCAAGCTTCACACGGTTATCG 59.606 52.381 0.00 0.00 45.88 2.92
781 914 3.713936 CGGTTATCGTCAGCAGACA 57.286 52.632 10.09 0.00 45.23 3.41
782 915 1.550065 CGGTTATCGTCAGCAGACAG 58.450 55.000 10.09 2.75 45.23 3.51
783 916 1.281899 GGTTATCGTCAGCAGACAGC 58.718 55.000 10.09 0.00 45.23 4.40
792 925 2.745492 GCAGACAGCTCACCAGGC 60.745 66.667 0.00 0.00 41.15 4.85
793 926 2.745698 CAGACAGCTCACCAGGCA 59.254 61.111 0.00 0.00 0.00 4.75
794 927 1.375652 CAGACAGCTCACCAGGCAG 60.376 63.158 0.00 0.00 0.00 4.85
871 1004 2.188829 GCACCAACTGAGCACAGCA 61.189 57.895 11.37 0.00 46.95 4.41
1077 1483 1.687840 CCTGGTGTGGGATCCCGTA 60.688 63.158 26.03 14.37 39.42 4.02
1104 1510 4.767255 CAGCACCTCCTGGCCGTC 62.767 72.222 0.00 0.00 36.63 4.79
1255 1670 0.797249 CTGCGTTTACTCGTCGGAGG 60.797 60.000 0.00 0.00 44.93 4.30
1633 2057 6.098409 ACTTCGGCTAAATCCAGAGAAAGATA 59.902 38.462 0.00 0.00 0.00 1.98
1716 2140 3.686726 GTGTCTTCATGGTCCATCTTGAC 59.313 47.826 0.00 10.40 34.42 3.18
1723 2147 2.269023 TGGTCCATCTTGACTCATGGT 58.731 47.619 0.00 0.00 40.59 3.55
1824 2262 7.557358 AGCATTCATTTACACTGTGGATATGAA 59.443 33.333 28.88 28.88 35.68 2.57
1881 2336 5.007234 CACATCCTTTCGTGTGAAGTTAACA 59.993 40.000 8.61 0.00 46.58 2.41
1895 2351 8.885722 TGTGAAGTTAACAGTTTTAAGTAGTGG 58.114 33.333 8.61 0.00 0.00 4.00
2210 3025 8.504815 CAATATTGTTATCTCTGCTGATCTTGG 58.495 37.037 7.32 0.00 0.00 3.61
2293 3297 6.811253 ACAAGCTCATTTATACCGTGAAAA 57.189 33.333 0.00 0.00 0.00 2.29
2294 3298 7.209471 ACAAGCTCATTTATACCGTGAAAAA 57.791 32.000 0.00 0.00 0.00 1.94
2453 3899 1.000521 CAGGCATGGTGGTGGACAT 60.001 57.895 0.00 0.00 0.00 3.06
2481 3970 2.349532 GCTAAAGTTGTGAGTCGTTGGC 60.350 50.000 0.00 0.00 0.00 4.52
2602 4149 7.726033 AGTTGAGGTATCTGAACTGTTCTAT 57.274 36.000 20.18 15.40 43.90 1.98
2614 4161 7.173218 TCTGAACTGTTCTATGAAAATGTGTCC 59.827 37.037 20.18 0.00 0.00 4.02
2685 4244 6.974932 TTTTCTCTACAATAGCTTGCTCAG 57.025 37.500 0.00 0.00 35.69 3.35
2762 4321 1.620822 TTTTCTCAAGGCCCTGCTTC 58.379 50.000 0.00 0.00 0.00 3.86
2763 4322 0.251341 TTTCTCAAGGCCCTGCTTCC 60.251 55.000 0.00 0.00 0.00 3.46
2764 4323 1.136329 TTCTCAAGGCCCTGCTTCCT 61.136 55.000 0.00 0.00 0.00 3.36
2765 4324 1.077858 CTCAAGGCCCTGCTTCCTC 60.078 63.158 0.00 0.00 0.00 3.71
2766 4325 1.539869 TCAAGGCCCTGCTTCCTCT 60.540 57.895 0.00 0.00 0.00 3.69
2767 4326 1.136329 TCAAGGCCCTGCTTCCTCTT 61.136 55.000 0.00 0.00 0.00 2.85
2768 4327 0.679321 CAAGGCCCTGCTTCCTCTTC 60.679 60.000 0.00 0.00 0.00 2.87
2786 4345 5.048434 CCTCTTCCTCAACAGTTTTCCATTC 60.048 44.000 0.00 0.00 0.00 2.67
2809 4368 1.153289 CGCCATGCCTTGAGCTAGT 60.153 57.895 0.00 0.00 44.23 2.57
2826 4385 2.597578 AGTTTGGCGGGGAATTTACT 57.402 45.000 0.00 0.00 0.00 2.24
2838 4397 6.055588 CGGGGAATTTACTCATGTTCTACAT 58.944 40.000 0.00 0.00 39.91 2.29
2897 4456 2.309755 TGGGCTGGATGATCTCTTTTGT 59.690 45.455 0.00 0.00 0.00 2.83
2938 4497 1.604604 TTCAACTACCTTGCAGCCAC 58.395 50.000 0.00 0.00 0.00 5.01
2963 4522 7.397192 ACTTTATTTCCCTGTTCTTGCATATGT 59.603 33.333 4.29 0.00 0.00 2.29
3030 4589 7.187824 AGCAGAATGACATACTTCCTCTTTA 57.812 36.000 0.00 0.00 39.69 1.85
3032 4591 7.124901 AGCAGAATGACATACTTCCTCTTTAGA 59.875 37.037 0.00 0.00 39.69 2.10
3040 4606 6.317391 ACATACTTCCTCTTTAGATGCTTTGC 59.683 38.462 0.00 0.00 0.00 3.68
3041 4607 4.655963 ACTTCCTCTTTAGATGCTTTGCA 58.344 39.130 0.00 0.00 44.86 4.08
3071 4637 6.030228 CCTGAATAATCTTTTCTTCGTTGGC 58.970 40.000 0.00 0.00 0.00 4.52
3120 4686 2.486592 GGTAAGGTTGTGATCGGTTTGG 59.513 50.000 0.00 0.00 0.00 3.28
3138 4704 4.989279 TTGGCTGAAAATTAGGATCTGC 57.011 40.909 0.00 0.00 37.32 4.26
3174 4741 1.471119 TACCGCCTTACTGGAGTGAG 58.529 55.000 0.00 0.00 38.35 3.51
3193 4760 8.177119 GAGTGAGATCTCCTTGTATAATGAGT 57.823 38.462 20.03 0.00 32.41 3.41
3194 4761 9.290988 GAGTGAGATCTCCTTGTATAATGAGTA 57.709 37.037 20.03 0.00 32.41 2.59
3195 4762 9.073475 AGTGAGATCTCCTTGTATAATGAGTAC 57.927 37.037 20.03 5.54 32.41 2.73
3196 4763 8.301002 GTGAGATCTCCTTGTATAATGAGTACC 58.699 40.741 20.03 0.00 32.41 3.34
3197 4764 8.228206 TGAGATCTCCTTGTATAATGAGTACCT 58.772 37.037 20.03 1.98 32.41 3.08
3307 4878 6.601332 TCTATGGACCAAAAGGAATCATACC 58.399 40.000 0.00 0.00 0.00 2.73
3442 5016 9.926158 ATATATGTAGCTTGACTGAAGATCTTG 57.074 33.333 14.00 1.55 32.82 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.269831 GCGGTTTAATGGGTTGTTGCA 60.270 47.619 0.00 0.00 0.00 4.08
23 24 0.621609 TAGCTGGCGGTTTAATGGGT 59.378 50.000 0.00 0.00 0.00 4.51
83 90 2.746472 GCGGGAATTGAAGATACAGGCT 60.746 50.000 0.00 0.00 0.00 4.58
161 168 0.401738 AAGTGGTGGTCATGGTCCTG 59.598 55.000 8.76 0.00 0.00 3.86
162 169 0.693049 GAAGTGGTGGTCATGGTCCT 59.307 55.000 8.76 0.00 0.00 3.85
163 170 0.322546 GGAAGTGGTGGTCATGGTCC 60.323 60.000 0.00 0.00 0.00 4.46
164 171 0.322546 GGGAAGTGGTGGTCATGGTC 60.323 60.000 0.00 0.00 0.00 4.02
165 172 1.767692 GGGAAGTGGTGGTCATGGT 59.232 57.895 0.00 0.00 0.00 3.55
166 173 1.000896 GGGGAAGTGGTGGTCATGG 60.001 63.158 0.00 0.00 0.00 3.66
167 174 1.377202 CGGGGAAGTGGTGGTCATG 60.377 63.158 0.00 0.00 0.00 3.07
168 175 1.537889 TCGGGGAAGTGGTGGTCAT 60.538 57.895 0.00 0.00 0.00 3.06
169 176 2.122769 TCGGGGAAGTGGTGGTCA 60.123 61.111 0.00 0.00 0.00 4.02
170 177 2.346365 GTCGGGGAAGTGGTGGTC 59.654 66.667 0.00 0.00 0.00 4.02
171 178 3.246880 GGTCGGGGAAGTGGTGGT 61.247 66.667 0.00 0.00 0.00 4.16
172 179 2.928396 AGGTCGGGGAAGTGGTGG 60.928 66.667 0.00 0.00 0.00 4.61
173 180 1.913762 AGAGGTCGGGGAAGTGGTG 60.914 63.158 0.00 0.00 0.00 4.17
174 181 1.913762 CAGAGGTCGGGGAAGTGGT 60.914 63.158 0.00 0.00 0.00 4.16
175 182 2.982130 CAGAGGTCGGGGAAGTGG 59.018 66.667 0.00 0.00 0.00 4.00
176 183 1.903877 ATGCAGAGGTCGGGGAAGTG 61.904 60.000 0.00 0.00 0.00 3.16
177 184 1.613630 ATGCAGAGGTCGGGGAAGT 60.614 57.895 0.00 0.00 0.00 3.01
178 185 1.144936 GATGCAGAGGTCGGGGAAG 59.855 63.158 0.00 0.00 0.00 3.46
179 186 1.306141 AGATGCAGAGGTCGGGGAA 60.306 57.895 0.00 0.00 0.00 3.97
180 187 2.060383 CAGATGCAGAGGTCGGGGA 61.060 63.158 0.00 0.00 0.00 4.81
181 188 2.503061 CAGATGCAGAGGTCGGGG 59.497 66.667 0.00 0.00 0.00 5.73
182 189 2.202987 GCAGATGCAGAGGTCGGG 60.203 66.667 0.00 0.00 41.59 5.14
183 190 2.202987 GGCAGATGCAGAGGTCGG 60.203 66.667 7.19 0.00 44.36 4.79
184 191 2.202987 GGGCAGATGCAGAGGTCG 60.203 66.667 7.19 0.00 44.36 4.79
185 192 1.451028 GTGGGCAGATGCAGAGGTC 60.451 63.158 7.19 0.00 44.36 3.85
186 193 1.569030 ATGTGGGCAGATGCAGAGGT 61.569 55.000 7.19 0.00 44.36 3.85
187 194 0.818445 GATGTGGGCAGATGCAGAGG 60.818 60.000 7.19 0.00 44.36 3.69
188 195 0.180642 AGATGTGGGCAGATGCAGAG 59.819 55.000 7.19 0.00 44.36 3.35
189 196 0.107361 CAGATGTGGGCAGATGCAGA 60.107 55.000 7.19 0.00 44.36 4.26
190 197 1.725557 GCAGATGTGGGCAGATGCAG 61.726 60.000 7.19 0.00 44.36 4.41
191 198 1.751544 GCAGATGTGGGCAGATGCA 60.752 57.895 7.19 0.00 44.36 3.96
192 199 0.179037 TAGCAGATGTGGGCAGATGC 60.179 55.000 0.00 0.00 39.12 3.91
193 200 1.542767 CCTAGCAGATGTGGGCAGATG 60.543 57.143 0.00 0.00 0.00 2.90
194 201 0.763652 CCTAGCAGATGTGGGCAGAT 59.236 55.000 0.00 0.00 0.00 2.90
195 202 0.325577 TCCTAGCAGATGTGGGCAGA 60.326 55.000 0.00 0.00 0.00 4.26
196 203 0.763652 ATCCTAGCAGATGTGGGCAG 59.236 55.000 0.00 0.00 0.00 4.85
197 204 2.101640 TATCCTAGCAGATGTGGGCA 57.898 50.000 0.00 0.00 0.00 5.36
198 205 3.492102 TTTATCCTAGCAGATGTGGGC 57.508 47.619 0.00 0.00 0.00 5.36
199 206 6.431234 GGTAATTTTATCCTAGCAGATGTGGG 59.569 42.308 0.00 0.00 0.00 4.61
200 207 6.431234 GGGTAATTTTATCCTAGCAGATGTGG 59.569 42.308 0.00 0.00 31.02 4.17
201 208 6.431234 GGGGTAATTTTATCCTAGCAGATGTG 59.569 42.308 0.00 0.00 34.26 3.21
202 209 6.102615 TGGGGTAATTTTATCCTAGCAGATGT 59.897 38.462 0.00 0.00 34.26 3.06
203 210 6.431234 GTGGGGTAATTTTATCCTAGCAGATG 59.569 42.308 0.00 0.00 34.26 2.90
204 211 6.332901 AGTGGGGTAATTTTATCCTAGCAGAT 59.667 38.462 0.00 0.00 34.26 2.90
205 212 5.670361 AGTGGGGTAATTTTATCCTAGCAGA 59.330 40.000 0.00 0.00 34.26 4.26
206 213 5.941788 AGTGGGGTAATTTTATCCTAGCAG 58.058 41.667 0.00 0.00 34.26 4.24
207 214 5.430417 TGAGTGGGGTAATTTTATCCTAGCA 59.570 40.000 0.00 0.00 34.26 3.49
208 215 5.937111 TGAGTGGGGTAATTTTATCCTAGC 58.063 41.667 0.00 0.00 34.26 3.42
209 216 7.715686 GTCTTGAGTGGGGTAATTTTATCCTAG 59.284 40.741 0.00 0.00 34.26 3.02
210 217 7.183112 TGTCTTGAGTGGGGTAATTTTATCCTA 59.817 37.037 0.00 0.00 34.26 2.94
211 218 6.011981 TGTCTTGAGTGGGGTAATTTTATCCT 60.012 38.462 0.00 0.00 34.26 3.24
212 219 6.184789 TGTCTTGAGTGGGGTAATTTTATCC 58.815 40.000 0.00 0.00 32.98 2.59
213 220 6.318900 CCTGTCTTGAGTGGGGTAATTTTATC 59.681 42.308 0.00 0.00 0.00 1.75
214 221 6.187682 CCTGTCTTGAGTGGGGTAATTTTAT 58.812 40.000 0.00 0.00 0.00 1.40
215 222 5.073965 ACCTGTCTTGAGTGGGGTAATTTTA 59.926 40.000 0.00 0.00 0.00 1.52
216 223 4.141018 ACCTGTCTTGAGTGGGGTAATTTT 60.141 41.667 0.00 0.00 0.00 1.82
217 224 3.397955 ACCTGTCTTGAGTGGGGTAATTT 59.602 43.478 0.00 0.00 0.00 1.82
218 225 2.986728 ACCTGTCTTGAGTGGGGTAATT 59.013 45.455 0.00 0.00 0.00 1.40
219 226 2.572104 GACCTGTCTTGAGTGGGGTAAT 59.428 50.000 0.00 0.00 0.00 1.89
220 227 1.975680 GACCTGTCTTGAGTGGGGTAA 59.024 52.381 0.00 0.00 0.00 2.85
221 228 1.149288 AGACCTGTCTTGAGTGGGGTA 59.851 52.381 0.00 0.00 36.31 3.69
222 229 0.104934 AGACCTGTCTTGAGTGGGGT 60.105 55.000 0.00 0.00 36.31 4.95
223 230 2.765352 AGACCTGTCTTGAGTGGGG 58.235 57.895 0.00 0.00 36.31 4.96
234 241 1.512926 GCGAACATGACAAGACCTGT 58.487 50.000 0.00 0.00 42.61 4.00
235 242 0.798776 GGCGAACATGACAAGACCTG 59.201 55.000 0.00 0.00 0.00 4.00
236 243 0.670546 CGGCGAACATGACAAGACCT 60.671 55.000 0.00 0.00 0.00 3.85
237 244 0.949105 ACGGCGAACATGACAAGACC 60.949 55.000 16.62 0.00 0.00 3.85
238 245 0.438830 GACGGCGAACATGACAAGAC 59.561 55.000 16.62 0.00 0.00 3.01
239 246 1.006825 CGACGGCGAACATGACAAGA 61.007 55.000 16.62 0.00 40.82 3.02
240 247 1.416049 CGACGGCGAACATGACAAG 59.584 57.895 16.62 0.00 40.82 3.16
241 248 2.663478 GCGACGGCGAACATGACAA 61.663 57.895 18.90 0.00 40.82 3.18
242 249 3.109547 GCGACGGCGAACATGACA 61.110 61.111 18.90 0.00 40.82 3.58
243 250 3.849953 GGCGACGGCGAACATGAC 61.850 66.667 18.90 0.00 41.24 3.06
244 251 4.365505 TGGCGACGGCGAACATGA 62.366 61.111 18.90 0.00 41.24 3.07
245 252 4.147322 GTGGCGACGGCGAACATG 62.147 66.667 18.90 0.00 41.24 3.21
246 253 3.950794 ATGTGGCGACGGCGAACAT 62.951 57.895 22.27 22.27 39.75 2.71
247 254 4.673298 ATGTGGCGACGGCGAACA 62.673 61.111 18.90 19.55 41.24 3.18
248 255 3.362851 GAATGTGGCGACGGCGAAC 62.363 63.158 18.90 13.26 41.24 3.95
249 256 3.115892 GAATGTGGCGACGGCGAA 61.116 61.111 18.90 0.00 41.24 4.70
250 257 3.583276 AAGAATGTGGCGACGGCGA 62.583 57.895 18.90 6.15 41.24 5.54
251 258 3.118454 AAGAATGTGGCGACGGCG 61.118 61.111 17.16 6.12 41.24 6.46
252 259 2.480555 CAAGAATGTGGCGACGGC 59.519 61.111 15.43 15.43 38.90 5.68
253 260 1.671054 ACCAAGAATGTGGCGACGG 60.671 57.895 0.00 0.00 43.00 4.79
254 261 0.948623 TCACCAAGAATGTGGCGACG 60.949 55.000 0.00 0.00 43.00 5.12
255 262 1.234821 TTCACCAAGAATGTGGCGAC 58.765 50.000 0.00 0.00 43.00 5.19
256 263 1.974265 TTTCACCAAGAATGTGGCGA 58.026 45.000 0.00 0.00 43.00 5.54
257 264 2.393764 GTTTTCACCAAGAATGTGGCG 58.606 47.619 0.00 0.00 43.00 5.69
258 265 2.034053 TCGTTTTCACCAAGAATGTGGC 59.966 45.455 0.00 0.00 43.00 5.01
259 266 3.550030 GGTCGTTTTCACCAAGAATGTGG 60.550 47.826 0.00 0.00 44.92 4.17
260 267 3.550030 GGGTCGTTTTCACCAAGAATGTG 60.550 47.826 0.00 0.00 35.83 3.21
261 268 2.621526 GGGTCGTTTTCACCAAGAATGT 59.378 45.455 0.00 0.00 35.83 2.71
262 269 2.621055 TGGGTCGTTTTCACCAAGAATG 59.379 45.455 0.00 0.00 35.83 2.67
263 270 2.884639 CTGGGTCGTTTTCACCAAGAAT 59.115 45.455 0.00 0.00 37.14 2.40
264 271 2.294074 CTGGGTCGTTTTCACCAAGAA 58.706 47.619 0.00 0.00 37.14 2.52
265 272 1.961793 CTGGGTCGTTTTCACCAAGA 58.038 50.000 0.00 0.00 37.14 3.02
266 273 0.310854 GCTGGGTCGTTTTCACCAAG 59.689 55.000 0.00 0.00 37.96 3.61
267 274 0.394488 TGCTGGGTCGTTTTCACCAA 60.394 50.000 0.00 0.00 35.35 3.67
268 275 0.817634 CTGCTGGGTCGTTTTCACCA 60.818 55.000 0.00 0.00 35.35 4.17
269 276 0.534203 TCTGCTGGGTCGTTTTCACC 60.534 55.000 0.00 0.00 0.00 4.02
270 277 0.586802 GTCTGCTGGGTCGTTTTCAC 59.413 55.000 0.00 0.00 0.00 3.18
271 278 0.534203 GGTCTGCTGGGTCGTTTTCA 60.534 55.000 0.00 0.00 0.00 2.69
272 279 1.566018 CGGTCTGCTGGGTCGTTTTC 61.566 60.000 0.00 0.00 0.00 2.29
273 280 1.597027 CGGTCTGCTGGGTCGTTTT 60.597 57.895 0.00 0.00 0.00 2.43
274 281 2.030562 CGGTCTGCTGGGTCGTTT 59.969 61.111 0.00 0.00 0.00 3.60
275 282 4.681978 GCGGTCTGCTGGGTCGTT 62.682 66.667 0.00 0.00 41.73 3.85
278 285 3.537206 AACTGCGGTCTGCTGGGTC 62.537 63.158 14.33 0.00 45.96 4.46
279 286 3.560251 AACTGCGGTCTGCTGGGT 61.560 61.111 14.33 4.02 45.96 4.51
280 287 3.052082 CAACTGCGGTCTGCTGGG 61.052 66.667 14.33 3.33 45.96 4.45
281 288 3.730761 GCAACTGCGGTCTGCTGG 61.731 66.667 19.33 5.72 45.96 4.85
282 289 3.730761 GGCAACTGCGGTCTGCTG 61.731 66.667 23.13 8.87 46.63 4.41
283 290 4.254709 TGGCAACTGCGGTCTGCT 62.255 61.111 23.13 0.00 46.63 4.24
284 291 4.030452 GTGGCAACTGCGGTCTGC 62.030 66.667 18.74 18.74 46.70 4.26
285 292 3.357079 GGTGGCAACTGCGGTCTG 61.357 66.667 0.00 0.84 43.26 3.51
286 293 2.902423 TTTGGTGGCAACTGCGGTCT 62.902 55.000 3.27 0.00 43.26 3.85
287 294 2.406452 CTTTGGTGGCAACTGCGGTC 62.406 60.000 3.27 0.00 43.26 4.79
288 295 2.441164 TTTGGTGGCAACTGCGGT 60.441 55.556 3.27 0.00 43.26 5.68
289 296 1.526575 ATCTTTGGTGGCAACTGCGG 61.527 55.000 3.27 0.00 43.26 5.69
290 297 1.131126 CTATCTTTGGTGGCAACTGCG 59.869 52.381 3.27 0.00 43.26 5.18
291 298 1.474077 CCTATCTTTGGTGGCAACTGC 59.526 52.381 3.27 0.00 41.14 4.40
347 464 7.179516 GGTTTGTATCCATTAGAAAAGGGGAAA 59.820 37.037 0.00 0.00 37.16 3.13
358 475 8.906867 AGATGAATGTTGGTTTGTATCCATTAG 58.093 33.333 0.00 0.00 34.75 1.73
383 516 7.540055 GTCCAAATCAAATTCTTGTGAGCTAAG 59.460 37.037 0.00 0.00 33.94 2.18
391 524 5.070001 TCGAGGTCCAAATCAAATTCTTGT 58.930 37.500 0.00 0.00 33.94 3.16
431 564 3.633986 GGAGGTCCAAATAAGATTGCCAG 59.366 47.826 0.00 0.00 35.64 4.85
435 568 7.651027 AATTCTGGAGGTCCAAATAAGATTG 57.349 36.000 0.00 0.00 46.97 2.67
439 572 6.319911 GGAGAAATTCTGGAGGTCCAAATAAG 59.680 42.308 0.00 0.00 46.97 1.73
479 612 6.487668 TGTTGCATGATCAGATAATTACAGGG 59.512 38.462 0.09 0.00 0.00 4.45
526 659 0.749818 TTGACAAGTCTGGGCGCAAA 60.750 50.000 10.83 0.00 0.00 3.68
559 692 4.307432 AGTATGATGGCTTTCGTAATCCG 58.693 43.478 0.00 0.00 38.13 4.18
560 693 4.691216 GGAGTATGATGGCTTTCGTAATCC 59.309 45.833 15.70 15.70 42.08 3.01
561 694 5.542779 AGGAGTATGATGGCTTTCGTAATC 58.457 41.667 8.31 8.31 33.54 1.75
562 695 5.070446 TGAGGAGTATGATGGCTTTCGTAAT 59.930 40.000 0.00 0.00 0.00 1.89
563 696 4.404394 TGAGGAGTATGATGGCTTTCGTAA 59.596 41.667 0.00 0.00 0.00 3.18
564 697 3.958147 TGAGGAGTATGATGGCTTTCGTA 59.042 43.478 0.00 0.00 0.00 3.43
565 698 2.766263 TGAGGAGTATGATGGCTTTCGT 59.234 45.455 0.00 0.00 0.00 3.85
566 699 3.459232 TGAGGAGTATGATGGCTTTCG 57.541 47.619 0.00 0.00 0.00 3.46
567 700 4.023365 GCATTGAGGAGTATGATGGCTTTC 60.023 45.833 0.00 0.00 0.00 2.62
568 701 3.887716 GCATTGAGGAGTATGATGGCTTT 59.112 43.478 0.00 0.00 0.00 3.51
569 702 3.137913 AGCATTGAGGAGTATGATGGCTT 59.862 43.478 0.00 0.00 0.00 4.35
570 703 2.709934 AGCATTGAGGAGTATGATGGCT 59.290 45.455 0.00 0.00 0.00 4.75
571 704 3.137446 AGCATTGAGGAGTATGATGGC 57.863 47.619 0.00 0.00 0.00 4.40
585 718 9.859427 TGGTTCTTTATTAGAAATCAAGCATTG 57.141 29.630 0.00 0.00 45.46 2.82
587 720 8.689972 CCTGGTTCTTTATTAGAAATCAAGCAT 58.310 33.333 0.00 0.00 44.25 3.79
588 721 7.888021 TCCTGGTTCTTTATTAGAAATCAAGCA 59.112 33.333 0.00 0.00 44.25 3.91
589 722 8.281212 TCCTGGTTCTTTATTAGAAATCAAGC 57.719 34.615 0.00 0.00 44.25 4.01
592 725 9.838339 GAGATCCTGGTTCTTTATTAGAAATCA 57.162 33.333 8.62 0.00 44.25 2.57
593 726 9.838339 TGAGATCCTGGTTCTTTATTAGAAATC 57.162 33.333 8.62 0.00 44.25 2.17
598 731 9.495572 GGTAATGAGATCCTGGTTCTTTATTAG 57.504 37.037 17.05 0.00 0.00 1.73
599 732 8.998814 TGGTAATGAGATCCTGGTTCTTTATTA 58.001 33.333 8.62 12.49 0.00 0.98
600 733 7.872138 TGGTAATGAGATCCTGGTTCTTTATT 58.128 34.615 8.62 13.26 0.00 1.40
601 734 7.451731 TGGTAATGAGATCCTGGTTCTTTAT 57.548 36.000 8.62 4.66 0.00 1.40
602 735 6.884472 TGGTAATGAGATCCTGGTTCTTTA 57.116 37.500 8.62 2.55 0.00 1.85
603 736 5.779241 TGGTAATGAGATCCTGGTTCTTT 57.221 39.130 8.62 3.42 0.00 2.52
604 737 5.983333 ATGGTAATGAGATCCTGGTTCTT 57.017 39.130 8.62 0.00 0.00 2.52
605 738 5.308237 GGTATGGTAATGAGATCCTGGTTCT 59.692 44.000 6.99 6.99 0.00 3.01
606 739 5.308237 AGGTATGGTAATGAGATCCTGGTTC 59.692 44.000 0.00 0.00 0.00 3.62
607 740 5.227593 AGGTATGGTAATGAGATCCTGGTT 58.772 41.667 0.00 0.00 0.00 3.67
608 741 4.832492 AGGTATGGTAATGAGATCCTGGT 58.168 43.478 0.00 0.00 0.00 4.00
609 742 5.832539 AAGGTATGGTAATGAGATCCTGG 57.167 43.478 0.00 0.00 0.00 4.45
610 743 9.799106 AAATAAAGGTATGGTAATGAGATCCTG 57.201 33.333 0.00 0.00 0.00 3.86
612 745 9.793259 TGAAATAAAGGTATGGTAATGAGATCC 57.207 33.333 0.00 0.00 0.00 3.36
620 753 9.983024 TTGGAGATTGAAATAAAGGTATGGTAA 57.017 29.630 0.00 0.00 0.00 2.85
621 754 9.627123 CTTGGAGATTGAAATAAAGGTATGGTA 57.373 33.333 0.00 0.00 0.00 3.25
622 755 8.336235 TCTTGGAGATTGAAATAAAGGTATGGT 58.664 33.333 0.00 0.00 0.00 3.55
623 756 8.752005 TCTTGGAGATTGAAATAAAGGTATGG 57.248 34.615 0.00 0.00 0.00 2.74
627 760 9.190317 GGTTATCTTGGAGATTGAAATAAAGGT 57.810 33.333 0.00 0.00 36.20 3.50
628 761 9.189156 TGGTTATCTTGGAGATTGAAATAAAGG 57.811 33.333 0.00 0.00 36.20 3.11
632 765 9.753674 AGTTTGGTTATCTTGGAGATTGAAATA 57.246 29.630 0.00 0.00 36.20 1.40
633 766 8.655935 AGTTTGGTTATCTTGGAGATTGAAAT 57.344 30.769 0.00 0.00 36.20 2.17
634 767 7.723616 TGAGTTTGGTTATCTTGGAGATTGAAA 59.276 33.333 0.00 0.00 36.20 2.69
635 768 7.174946 GTGAGTTTGGTTATCTTGGAGATTGAA 59.825 37.037 0.00 0.00 36.20 2.69
636 769 6.655003 GTGAGTTTGGTTATCTTGGAGATTGA 59.345 38.462 0.00 0.00 36.20 2.57
637 770 6.430925 TGTGAGTTTGGTTATCTTGGAGATTG 59.569 38.462 0.00 0.00 36.20 2.67
638 771 6.542821 TGTGAGTTTGGTTATCTTGGAGATT 58.457 36.000 0.00 0.00 36.20 2.40
639 772 6.126863 TGTGAGTTTGGTTATCTTGGAGAT 57.873 37.500 0.00 0.00 38.70 2.75
640 773 5.560722 TGTGAGTTTGGTTATCTTGGAGA 57.439 39.130 0.00 0.00 0.00 3.71
641 774 5.048713 GGTTGTGAGTTTGGTTATCTTGGAG 60.049 44.000 0.00 0.00 0.00 3.86
642 775 4.825085 GGTTGTGAGTTTGGTTATCTTGGA 59.175 41.667 0.00 0.00 0.00 3.53
643 776 4.320202 CGGTTGTGAGTTTGGTTATCTTGG 60.320 45.833 0.00 0.00 0.00 3.61
644 777 4.274950 ACGGTTGTGAGTTTGGTTATCTTG 59.725 41.667 0.00 0.00 0.00 3.02
645 778 4.457466 ACGGTTGTGAGTTTGGTTATCTT 58.543 39.130 0.00 0.00 0.00 2.40
646 779 4.081322 ACGGTTGTGAGTTTGGTTATCT 57.919 40.909 0.00 0.00 0.00 1.98
673 806 8.603181 CGTTTTGAAGGAAGATTGAACAAAATT 58.397 29.630 0.00 0.00 37.80 1.82
674 807 7.224557 CCGTTTTGAAGGAAGATTGAACAAAAT 59.775 33.333 0.00 0.00 37.80 1.82
675 808 6.533367 CCGTTTTGAAGGAAGATTGAACAAAA 59.467 34.615 0.00 0.00 34.80 2.44
676 809 6.039616 CCGTTTTGAAGGAAGATTGAACAAA 58.960 36.000 0.00 0.00 0.00 2.83
677 810 5.587289 CCGTTTTGAAGGAAGATTGAACAA 58.413 37.500 0.00 0.00 0.00 2.83
678 811 4.499019 GCCGTTTTGAAGGAAGATTGAACA 60.499 41.667 0.00 0.00 0.00 3.18
679 812 3.981416 GCCGTTTTGAAGGAAGATTGAAC 59.019 43.478 0.00 0.00 0.00 3.18
680 813 3.634448 TGCCGTTTTGAAGGAAGATTGAA 59.366 39.130 0.00 0.00 0.00 2.69
681 814 3.218453 TGCCGTTTTGAAGGAAGATTGA 58.782 40.909 0.00 0.00 0.00 2.57
682 815 3.641437 TGCCGTTTTGAAGGAAGATTG 57.359 42.857 0.00 0.00 0.00 2.67
683 816 4.664150 TTTGCCGTTTTGAAGGAAGATT 57.336 36.364 0.00 0.00 0.00 2.40
684 817 4.664150 TTTTGCCGTTTTGAAGGAAGAT 57.336 36.364 0.00 0.00 0.00 2.40
685 818 4.177783 GTTTTTGCCGTTTTGAAGGAAGA 58.822 39.130 0.00 0.00 0.00 2.87
686 819 3.929610 TGTTTTTGCCGTTTTGAAGGAAG 59.070 39.130 0.00 0.00 0.00 3.46
687 820 3.926616 TGTTTTTGCCGTTTTGAAGGAA 58.073 36.364 0.00 0.00 0.00 3.36
688 821 3.594603 TGTTTTTGCCGTTTTGAAGGA 57.405 38.095 0.00 0.00 0.00 3.36
689 822 4.119136 AGATGTTTTTGCCGTTTTGAAGG 58.881 39.130 0.00 0.00 0.00 3.46
690 823 5.717038 AAGATGTTTTTGCCGTTTTGAAG 57.283 34.783 0.00 0.00 0.00 3.02
691 824 9.482627 AATATAAGATGTTTTTGCCGTTTTGAA 57.517 25.926 0.00 0.00 0.00 2.69
692 825 9.482627 AAATATAAGATGTTTTTGCCGTTTTGA 57.517 25.926 0.00 0.00 0.00 2.69
695 828 9.482627 TCAAAATATAAGATGTTTTTGCCGTTT 57.517 25.926 0.00 0.00 38.38 3.60
696 829 9.139174 CTCAAAATATAAGATGTTTTTGCCGTT 57.861 29.630 0.00 0.00 38.38 4.44
697 830 8.519526 TCTCAAAATATAAGATGTTTTTGCCGT 58.480 29.630 0.00 0.00 38.38 5.68
698 831 8.909708 TCTCAAAATATAAGATGTTTTTGCCG 57.090 30.769 0.00 0.00 38.38 5.69
718 851 8.585881 GCTAAAGATGTATAGTACCCATCTCAA 58.414 37.037 11.77 5.18 43.32 3.02
719 852 7.178628 GGCTAAAGATGTATAGTACCCATCTCA 59.821 40.741 11.77 5.18 43.32 3.27
720 853 7.548967 GGCTAAAGATGTATAGTACCCATCTC 58.451 42.308 11.77 3.00 43.32 2.75
721 854 6.153000 CGGCTAAAGATGTATAGTACCCATCT 59.847 42.308 7.33 7.33 45.40 2.90
722 855 6.331061 CGGCTAAAGATGTATAGTACCCATC 58.669 44.000 0.00 3.67 36.16 3.51
723 856 5.187186 CCGGCTAAAGATGTATAGTACCCAT 59.813 44.000 0.00 0.00 0.00 4.00
724 857 4.525487 CCGGCTAAAGATGTATAGTACCCA 59.475 45.833 0.00 0.00 0.00 4.51
725 858 4.768968 TCCGGCTAAAGATGTATAGTACCC 59.231 45.833 0.00 0.00 0.00 3.69
726 859 5.972107 TCCGGCTAAAGATGTATAGTACC 57.028 43.478 0.00 0.00 0.00 3.34
727 860 7.034397 GGAATCCGGCTAAAGATGTATAGTAC 58.966 42.308 0.00 0.00 0.00 2.73
728 861 6.722590 TGGAATCCGGCTAAAGATGTATAGTA 59.277 38.462 0.00 0.00 0.00 1.82
729 862 5.542635 TGGAATCCGGCTAAAGATGTATAGT 59.457 40.000 0.00 0.00 0.00 2.12
730 863 6.037786 TGGAATCCGGCTAAAGATGTATAG 57.962 41.667 0.00 0.00 0.00 1.31
731 864 6.428083 TTGGAATCCGGCTAAAGATGTATA 57.572 37.500 0.00 0.00 0.00 1.47
732 865 4.974645 TGGAATCCGGCTAAAGATGTAT 57.025 40.909 0.00 0.00 0.00 2.29
733 866 4.703897 CTTGGAATCCGGCTAAAGATGTA 58.296 43.478 0.00 0.00 0.00 2.29
734 867 3.545703 CTTGGAATCCGGCTAAAGATGT 58.454 45.455 0.00 0.00 0.00 3.06
735 868 2.291741 GCTTGGAATCCGGCTAAAGATG 59.708 50.000 0.00 0.00 0.00 2.90
736 869 2.173569 AGCTTGGAATCCGGCTAAAGAT 59.826 45.455 15.82 0.00 34.56 2.40
737 870 1.559682 AGCTTGGAATCCGGCTAAAGA 59.440 47.619 15.82 0.00 34.56 2.52
738 871 2.044123 AGCTTGGAATCCGGCTAAAG 57.956 50.000 15.82 5.08 34.56 1.85
739 872 2.290641 TGAAGCTTGGAATCCGGCTAAA 60.291 45.455 17.23 8.21 35.05 1.85
740 873 1.280710 TGAAGCTTGGAATCCGGCTAA 59.719 47.619 17.23 8.50 35.05 3.09
741 874 0.908910 TGAAGCTTGGAATCCGGCTA 59.091 50.000 17.23 3.42 35.05 3.93
742 875 0.678048 GTGAAGCTTGGAATCCGGCT 60.678 55.000 2.10 12.53 36.94 5.52
743 876 0.960364 TGTGAAGCTTGGAATCCGGC 60.960 55.000 2.10 8.61 0.00 6.13
744 877 0.804989 GTGTGAAGCTTGGAATCCGG 59.195 55.000 2.10 0.00 0.00 5.14
745 878 0.443869 CGTGTGAAGCTTGGAATCCG 59.556 55.000 2.10 0.00 0.00 4.18
746 879 0.804989 CCGTGTGAAGCTTGGAATCC 59.195 55.000 2.10 0.00 0.00 3.01
747 880 1.523758 ACCGTGTGAAGCTTGGAATC 58.476 50.000 2.10 0.00 0.00 2.52
748 881 1.981256 AACCGTGTGAAGCTTGGAAT 58.019 45.000 2.10 0.00 0.00 3.01
749 882 2.623878 TAACCGTGTGAAGCTTGGAA 57.376 45.000 2.10 0.00 0.00 3.53
750 883 2.695359 GATAACCGTGTGAAGCTTGGA 58.305 47.619 2.10 0.00 0.00 3.53
751 884 1.393539 CGATAACCGTGTGAAGCTTGG 59.606 52.381 2.10 0.00 0.00 3.61
752 885 2.787723 CGATAACCGTGTGAAGCTTG 57.212 50.000 2.10 0.00 0.00 4.01
762 895 4.899433 GCTGTCTGCTGACGATAACCGT 62.899 54.545 17.59 0.00 46.44 4.83
763 896 1.550065 CTGTCTGCTGACGATAACCG 58.450 55.000 17.59 0.00 45.70 4.44
764 897 1.281899 GCTGTCTGCTGACGATAACC 58.718 55.000 17.59 0.60 45.70 2.85
775 908 2.745492 GCCTGGTGAGCTGTCTGC 60.745 66.667 0.00 0.00 43.29 4.26
776 909 1.375652 CTGCCTGGTGAGCTGTCTG 60.376 63.158 0.00 0.00 0.00 3.51
777 910 1.123861 TTCTGCCTGGTGAGCTGTCT 61.124 55.000 0.00 0.00 0.00 3.41
778 911 0.035630 ATTCTGCCTGGTGAGCTGTC 60.036 55.000 0.00 0.00 0.00 3.51
779 912 0.035630 GATTCTGCCTGGTGAGCTGT 60.036 55.000 0.00 0.00 0.00 4.40
780 913 0.747283 GGATTCTGCCTGGTGAGCTG 60.747 60.000 0.00 0.00 0.00 4.24
781 914 1.606531 GGATTCTGCCTGGTGAGCT 59.393 57.895 0.00 0.00 0.00 4.09
782 915 1.452833 GGGATTCTGCCTGGTGAGC 60.453 63.158 0.00 0.00 0.00 4.26
783 916 1.225704 GGGGATTCTGCCTGGTGAG 59.774 63.158 0.00 0.00 0.00 3.51
784 917 0.920763 ATGGGGATTCTGCCTGGTGA 60.921 55.000 0.00 0.00 0.00 4.02
785 918 0.032813 AATGGGGATTCTGCCTGGTG 60.033 55.000 0.00 0.00 0.00 4.17
786 919 0.259938 GAATGGGGATTCTGCCTGGT 59.740 55.000 0.00 0.00 0.00 4.00
787 920 0.259647 TGAATGGGGATTCTGCCTGG 59.740 55.000 0.00 0.00 0.00 4.45
788 921 1.341285 TGTGAATGGGGATTCTGCCTG 60.341 52.381 0.00 0.00 0.00 4.85
789 922 1.002069 TGTGAATGGGGATTCTGCCT 58.998 50.000 0.00 0.00 0.00 4.75
790 923 1.106285 GTGTGAATGGGGATTCTGCC 58.894 55.000 0.00 0.00 0.00 4.85
791 924 0.734889 CGTGTGAATGGGGATTCTGC 59.265 55.000 0.00 0.00 0.00 4.26
792 925 1.340017 ACCGTGTGAATGGGGATTCTG 60.340 52.381 0.00 0.00 0.00 3.02
793 926 0.991920 ACCGTGTGAATGGGGATTCT 59.008 50.000 0.00 0.00 0.00 2.40
794 927 1.834188 AACCGTGTGAATGGGGATTC 58.166 50.000 0.00 0.00 0.00 2.52
835 968 2.357517 GGGCTGTGAGTGTGACCG 60.358 66.667 0.00 0.00 0.00 4.79
871 1004 2.122167 GTCGTCATCTCGCCCTCCT 61.122 63.158 0.00 0.00 0.00 3.69
916 1053 1.602237 GCTCGAAGGTGATTGGGGA 59.398 57.895 0.00 0.00 0.00 4.81
918 1055 0.745845 CTGGCTCGAAGGTGATTGGG 60.746 60.000 0.00 0.00 0.00 4.12
919 1056 1.372087 GCTGGCTCGAAGGTGATTGG 61.372 60.000 0.00 0.00 0.00 3.16
920 1057 0.392193 AGCTGGCTCGAAGGTGATTG 60.392 55.000 0.00 0.00 0.00 2.67
1294 1709 2.625790 TGAAAATGAACAAACCCTCGGG 59.374 45.455 0.00 0.00 42.03 5.14
1633 2057 3.435682 ACCCTATCACATGTGGGGT 57.564 52.632 28.84 28.84 44.66 4.95
1716 2140 2.746362 GAGCTTCTTGAACCACCATGAG 59.254 50.000 0.00 0.00 0.00 2.90
1723 2147 4.835615 AGTCTTAGAGAGCTTCTTGAACCA 59.164 41.667 4.15 0.00 37.36 3.67
1824 2262 9.902196 ATGTAATCGAAAATTAACTCGGTTTTT 57.098 25.926 7.93 0.00 39.10 1.94
1881 2336 8.807948 AACATGATATGCCACTACTTAAAACT 57.192 30.769 0.00 0.00 0.00 2.66
1971 2733 4.604976 CATATTTCAGTAGGCAAGCAAGC 58.395 43.478 0.00 0.00 0.00 4.01
2096 2892 5.534654 TGCAGTTGGTTCAAGCTAACTTTAT 59.465 36.000 0.00 0.00 32.29 1.40
2210 3025 9.793259 TCCCTGTTATGGATTTCAGATTATTAC 57.207 33.333 0.00 0.00 0.00 1.89
2270 3089 6.811253 TTTTCACGGTATAAATGAGCTTGT 57.189 33.333 0.00 0.00 0.00 3.16
2453 3899 4.569943 GACTCACAACTTTAGCTCCATCA 58.430 43.478 0.00 0.00 0.00 3.07
2481 3970 2.173669 GTGCCCATCGTGTCATCCG 61.174 63.158 0.00 0.00 0.00 4.18
2602 4149 8.657387 TTAATAATGAAGGGGACACATTTTCA 57.343 30.769 0.00 0.00 39.22 2.69
2685 4244 3.494850 TTGCTAGGTGGGCAATAGC 57.505 52.632 0.00 0.00 43.50 2.97
2762 4321 3.820557 TGGAAAACTGTTGAGGAAGAGG 58.179 45.455 0.00 0.00 0.00 3.69
2763 4322 5.048434 GGAATGGAAAACTGTTGAGGAAGAG 60.048 44.000 0.00 0.00 0.00 2.85
2764 4323 4.827284 GGAATGGAAAACTGTTGAGGAAGA 59.173 41.667 0.00 0.00 0.00 2.87
2765 4324 4.021981 GGGAATGGAAAACTGTTGAGGAAG 60.022 45.833 0.00 0.00 0.00 3.46
2766 4325 3.895041 GGGAATGGAAAACTGTTGAGGAA 59.105 43.478 0.00 0.00 0.00 3.36
2767 4326 3.140144 AGGGAATGGAAAACTGTTGAGGA 59.860 43.478 0.00 0.00 0.00 3.71
2768 4327 3.500343 AGGGAATGGAAAACTGTTGAGG 58.500 45.455 0.00 0.00 0.00 3.86
2786 4345 2.045045 TCAAGGCATGGCGAAGGG 60.045 61.111 14.30 3.17 0.00 3.95
2809 4368 2.588464 TGAGTAAATTCCCCGCCAAA 57.412 45.000 0.00 0.00 0.00 3.28
2850 4409 4.188733 AGGGGGTAGGGATTAGTGAAAAA 58.811 43.478 0.00 0.00 0.00 1.94
2851 4410 3.784202 GAGGGGGTAGGGATTAGTGAAAA 59.216 47.826 0.00 0.00 0.00 2.29
2852 4411 3.390819 GAGGGGGTAGGGATTAGTGAAA 58.609 50.000 0.00 0.00 0.00 2.69
2853 4412 2.361070 GGAGGGGGTAGGGATTAGTGAA 60.361 54.545 0.00 0.00 0.00 3.18
2854 4413 1.222298 GGAGGGGGTAGGGATTAGTGA 59.778 57.143 0.00 0.00 0.00 3.41
2855 4414 1.223337 AGGAGGGGGTAGGGATTAGTG 59.777 57.143 0.00 0.00 0.00 2.74
2938 4497 7.775120 ACATATGCAAGAACAGGGAAATAAAG 58.225 34.615 1.58 0.00 0.00 1.85
2963 4522 3.009363 TCTCATCCATGAAAAGGCACAGA 59.991 43.478 0.00 0.00 36.18 3.41
3048 4614 5.734498 CGCCAACGAAGAAAAGATTATTCAG 59.266 40.000 0.00 0.00 43.93 3.02
3071 4637 2.095263 CAGCACCCAATTACAAGAACCG 60.095 50.000 0.00 0.00 0.00 4.44
3120 4686 3.623060 TCACGCAGATCCTAATTTTCAGC 59.377 43.478 0.00 0.00 0.00 4.26
3138 4704 2.607187 GGTAACCAGATCACACTCACG 58.393 52.381 0.00 0.00 0.00 4.35
3174 4741 8.861086 TCAAGGTACTCATTATACAAGGAGATC 58.139 37.037 1.83 0.00 43.67 2.75
3193 4760 4.224370 GGGAACATGAAGGTACTCAAGGTA 59.776 45.833 0.00 0.00 38.49 3.08
3194 4761 3.009143 GGGAACATGAAGGTACTCAAGGT 59.991 47.826 0.00 0.00 38.49 3.50
3195 4762 3.264450 AGGGAACATGAAGGTACTCAAGG 59.736 47.826 0.00 0.00 38.49 3.61
3196 4763 4.559862 AGGGAACATGAAGGTACTCAAG 57.440 45.455 0.00 0.00 38.49 3.02
3197 4764 4.506625 CCAAGGGAACATGAAGGTACTCAA 60.507 45.833 0.00 0.00 38.49 3.02
3307 4878 6.423001 TCTGTGAGATGATGATAAGAAATGCG 59.577 38.462 0.00 0.00 0.00 4.73
3423 4997 6.652481 CCTTTTCAAGATCTTCAGTCAAGCTA 59.348 38.462 4.57 0.00 31.26 3.32
3442 5016 4.555511 GCAGACATGACAACTGACCTTTTC 60.556 45.833 0.00 0.00 34.07 2.29
3452 5026 2.780065 TTGCAAGCAGACATGACAAC 57.220 45.000 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.