AutoCloner

Multiple sequence alignment - TraesCS6D01G062700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G062700	chr6D	100.000	2915	0	0	1	2915	29204127	29207041	0.000000e+00	5384.0
1	TraesCS6D01G062700	chr6D	76.342	596	120	18	1019	1608	35667494	35666914	1.700000e-77	300.0
2	TraesCS6D01G062700	chr6D	86.818	220	27	2	998	1216	36106106	36105888	8.070000e-61	244.0
3	TraesCS6D01G062700	chr6D	88.587	184	21	0	1034	1217	36074142	36073959	1.050000e-54	224.0
4	TraesCS6D01G062700	chr6A	95.416	2007	60	13	888	2887	33188555	33186574	0.000000e+00	3168.0
5	TraesCS6D01G062700	chr6A	90.040	743	50	8	155	877	33189353	33188615	0.000000e+00	941.0
6	TraesCS6D01G062700	chr6A	76.129	620	115	20	1005	1606	40543289	40542685	7.900000e-76	294.0
7	TraesCS6D01G062700	chr6A	74.448	634	128	19	998	1606	39878009	39877385	2.900000e-60	243.0
8	TraesCS6D01G062700	chr6A	93.210	162	10	1	1	161	33189549	33189388	1.350000e-58	237.0
9	TraesCS6D01G062700	chr6A	77.049	366	78	5	1854	2215	33016498	33016135	3.810000e-49	206.0
10	TraesCS6D01G062700	chr6A	83.178	214	34	2	1923	2135	46630077	46629865	8.240000e-46	195.0
11	TraesCS6D01G062700	chr6A	72.790	577	122	26	1823	2383	46295668	46295111	2.320000e-36	163.0
12	TraesCS6D01G062700	chr6B	96.105	1797	63	4	1093	2887	60090977	60089186	0.000000e+00	2924.0
13	TraesCS6D01G062700	chr6B	91.561	237	16	2	641	877	60091770	60091538	1.010000e-84	324.0
14	TraesCS6D01G062700	chr6B	89.340	197	21	0	1019	1215	75514568	75514372	6.240000e-62	248.0
15	TraesCS6D01G062700	chr6B	85.650	223	29	3	997	1216	75423492	75423270	6.280000e-57	231.0
16	TraesCS6D01G062700	chr6B	71.845	721	153	39	1688	2383	79555157	79554462	8.360000e-36	161.0
17	TraesCS6D01G062700	chr6B	95.098	102	4	1	1	101	60091869	60091768	3.010000e-35	159.0
18	TraesCS6D01G062700	chr6B	71.567	721	154	40	1688	2383	79437664	79436970	6.510000e-32	148.0
19	TraesCS6D01G062700	chr6B	72.056	569	123	27	1830	2383	79641340	79640793	1.410000e-28	137.0
20	TraesCS6D01G062700	chr6B	91.566	83	3	3	931	1012	60091399	60091320	8.540000e-21	111.0
21	TraesCS6D01G062700	chr6B	72.917	336	69	20	1886	2210	61790795	61791119	2.390000e-16	97.1
22	TraesCS6D01G062700	chr6B	95.652	46	2	0	886	931	60091478	60091433	1.120000e-09	75.0
23	TraesCS6D01G062700	chr5B	71.685	724	147	39	1688	2378	697030024	697029326	6.510000e-32	148.0
24	TraesCS6D01G062700	chrUn	71.889	651	136	35	1688	2315	112303837	112303211	8.420000e-31	145.0
25	TraesCS6D01G062700	chrUn	94.872	39	1	1	2125	2162	105552856	105552894	3.140000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G062700	chr6D	29204127	29207041	2914	False	5384.000000	5384	100.000000	1	2915	1	chr6D.!!$F1	2914
1	TraesCS6D01G062700	chr6D	35666914	35667494	580	True	300.000000	300	76.342000	1019	1608	1	chr6D.!!$R1	589
2	TraesCS6D01G062700	chr6A	33186574	33189549	2975	True	1448.666667	3168	92.888667	1	2887	3	chr6A.!!$R6	2886
3	TraesCS6D01G062700	chr6A	40542685	40543289	604	True	294.000000	294	76.129000	1005	1606	1	chr6A.!!$R3	601
4	TraesCS6D01G062700	chr6A	39877385	39878009	624	True	243.000000	243	74.448000	998	1606	1	chr6A.!!$R2	608
5	TraesCS6D01G062700	chr6B	60089186	60091869	2683	True	718.600000	2924	93.996400	1	2887	5	chr6B.!!$R6	2886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
931	1045	0.107456	GTGCATCGGATCCACTCCAT	59.893	55.0	13.41	0.0	45.24	3.41	F
937	1051	0.179073	CGGATCCACTCCATCACACC	60.179	60.0	13.41	0.0	45.24	4.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1771	2210	0.177141	GCAGGTATCACGGTTAGGCA	59.823	55.0	0.00	0.0	0.0	4.75	R
2567	3008	0.319900	ACGTGACACATGAGCAGGAC	60.320	55.0	6.37	0.0	0.0	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
79	81	2.043227	GTTTGGTTTGATTCACCCCCA	58.957	47.619	0.00	0.00	32.71	4.96
98	100	4.157105	CCCCAGGGTTTATCGTTAAGTTTG	59.843	45.833	4.22	0.00	0.00	2.93
103	105	7.041235	CCAGGGTTTATCGTTAAGTTTGTTACA	60.041	37.037	0.00	0.00	0.00	2.41
125	127	3.334583	ACGATGTAGCTGTGGTTTGAT	57.665	42.857	0.00	0.00	0.00	2.57
136	138	9.908152	GTAGCTGTGGTTTGATTTTAATAAAGT	57.092	29.630	0.00	0.00	0.00	2.66
151	153	9.880157	TTTTAATAAAGTTAGCTACGATGGTCT	57.120	29.630	0.00	0.00	0.00	3.85
161	204	3.492829	GCTACGATGGTCTTCCCCTAAAG	60.493	52.174	0.00	0.00	0.00	1.85
177	220	6.558775	TCCCCTAAAGTATGAGCTCATATGTT	59.441	38.462	33.20	28.85	40.53	2.71
183	226	5.303971	AGTATGAGCTCATATGTTTGCCTC	58.696	41.667	33.20	19.46	40.53	4.70
198	242	2.750350	CTCCCGAGGGCAGTGTTT	59.250	61.111	2.58	0.00	34.68	2.83
229	273	0.119155	TCACAAGGATGGTCTCCCCT	59.881	55.000	0.00	0.00	46.27	4.79
234	278	4.412199	CACAAGGATGGTCTCCCCTATAAA	59.588	45.833	0.00	0.00	46.27	1.40
245	289	6.996879	GGTCTCCCCTATAAAATAGTTTGGAC	59.003	42.308	0.00	0.00	0.00	4.02
247	291	6.679303	TCTCCCCTATAAAATAGTTTGGACCA	59.321	38.462	0.00	0.00	0.00	4.02
248	292	7.352522	TCTCCCCTATAAAATAGTTTGGACCAT	59.647	37.037	0.00	0.00	0.00	3.55
273	317	8.774890	TCGCCATACAAACAACTAAACTATTA	57.225	30.769	0.00	0.00	0.00	0.98
334	378	6.595326	CAGTAAAGCCAAGTCTACAATCATCA	59.405	38.462	0.00	0.00	0.00	3.07
335	379	7.281774	CAGTAAAGCCAAGTCTACAATCATCAT	59.718	37.037	0.00	0.00	0.00	2.45
416	465	2.201830	TCCCATCGACCCTTATTGGTT	58.798	47.619	0.00	0.00	39.24	3.67
453	502	3.680937	TCGTGCTTGTTATTAACCTTCCG	59.319	43.478	4.17	1.49	0.00	4.30
454	503	3.726782	CGTGCTTGTTATTAACCTTCCGC	60.727	47.826	4.17	1.27	0.00	5.54
465	514	1.847328	ACCTTCCGCATTTTTAGGGG	58.153	50.000	0.00	0.00	40.19	4.79
475	524	3.389221	CATTTTTAGGGGTTGTGTGTGC	58.611	45.455	0.00	0.00	0.00	4.57
476	525	2.145397	TTTTAGGGGTTGTGTGTGCA	57.855	45.000	0.00	0.00	0.00	4.57
490	539	2.793790	TGTGTGCATCGAAAACAAATGC	59.206	40.909	0.00	0.00	44.72	3.56
556	605	8.707938	AAAATCAACTTCAAACTCTCAAAAGG	57.292	30.769	0.00	0.00	0.00	3.11
561	610	8.531146	TCAACTTCAAACTCTCAAAAGGAAAAT	58.469	29.630	0.00	0.00	0.00	1.82
685	736	6.678568	AATATGTGGACAAAAATTGGACCA	57.321	33.333	0.00	0.00	38.30	4.02
747	799	6.812160	CCTATTGGTACTTCACAAGTCAGTAC	59.188	42.308	9.34	9.34	41.77	2.73
817	871	1.541379	ATACACCGGGTTTCCTTTGC	58.459	50.000	6.32	0.00	0.00	3.68
824	878	2.412870	CGGGTTTCCTTTGCAATTTCC	58.587	47.619	0.00	0.00	0.00	3.13
931	1045	0.107456	GTGCATCGGATCCACTCCAT	59.893	55.000	13.41	0.00	45.24	3.41
932	1046	0.394192	TGCATCGGATCCACTCCATC	59.606	55.000	13.41	0.00	45.24	3.51
933	1047	0.394192	GCATCGGATCCACTCCATCA	59.606	55.000	13.41	0.00	45.24	3.07
934	1048	1.875576	GCATCGGATCCACTCCATCAC	60.876	57.143	13.41	0.00	45.24	3.06
935	1049	1.413812	CATCGGATCCACTCCATCACA	59.586	52.381	13.41	0.00	45.24	3.58
936	1050	0.824109	TCGGATCCACTCCATCACAC	59.176	55.000	13.41	0.00	45.24	3.82
937	1051	0.179073	CGGATCCACTCCATCACACC	60.179	60.000	13.41	0.00	45.24	4.16
1393	1823	4.567597	TGTGGGACCCCGTCACCT	62.568	66.667	8.45	0.00	34.65	4.00
1416	1846	1.210931	CAAGCACTGGATTGCCGTG	59.789	57.895	0.00	0.00	44.14	4.94
1777	2216	4.044308	TGATTTGGATAGGGACTGCCTAA	58.956	43.478	0.00	0.00	41.52	2.69
1812	2251	1.359848	CGGTGGACTTGTATGACAGC	58.640	55.000	0.00	0.00	0.00	4.40
1819	2258	4.238514	GGACTTGTATGACAGCGATATCC	58.761	47.826	0.00	0.00	0.00	2.59
1910	2349	3.815809	TGTGGAAGACGAAGGTCATTTT	58.184	40.909	0.00	0.00	45.92	1.82
1945	2384	0.179029	CGTGGGTGTTGGGAAGAACT	60.179	55.000	0.00	0.00	0.00	3.01
1989	2428	2.741228	CGCTGGATTCAAAGGAGAGAGG	60.741	54.545	0.00	0.00	0.00	3.69
2190	2629	9.581099	CAACCTGTGTATAACAAAAGAAAGTTT	57.419	29.630	0.00	0.00	38.67	2.66
2282	2721	4.013267	AGTCCCATGACACTTCTCTTTG	57.987	45.455	0.00	0.00	44.33	2.77
2468	2909	4.657039	AGGGTATCGGAAAGGTTATTAGCA	59.343	41.667	0.00	0.00	0.00	3.49
2477	2918	3.864789	AGGTTATTAGCACTGGATGGG	57.135	47.619	0.00	0.00	0.00	4.00
2567	3008	1.741770	CTCCGCCCCTTTGTCTTCG	60.742	63.158	0.00	0.00	0.00	3.79
2574	3015	0.035458	CCCTTTGTCTTCGTCCTGCT	59.965	55.000	0.00	0.00	0.00	4.24
2644	3085	4.552674	AGGCCCACTTTTTCCTTCTTAAA	58.447	39.130	0.00	0.00	0.00	1.52
2704	3145	3.370633	GCGGTTTCCCTCCTTAATCTTCT	60.371	47.826	0.00	0.00	0.00	2.85
2895	3340	9.508642	CTTTATTATATGAAACCCTTCTCTCCC	57.491	37.037	0.00	0.00	32.33	4.30
2896	3341	8.814448	TTATTATATGAAACCCTTCTCTCCCT	57.186	34.615	0.00	0.00	32.33	4.20
2897	3342	7.713704	ATTATATGAAACCCTTCTCTCCCTT	57.286	36.000	0.00	0.00	32.33	3.95
2898	3343	5.638530	ATATGAAACCCTTCTCTCCCTTC	57.361	43.478	0.00	0.00	32.33	3.46
2899	3344	2.991580	TGAAACCCTTCTCTCCCTTCT	58.008	47.619	0.00	0.00	32.33	2.85
2900	3345	2.907042	TGAAACCCTTCTCTCCCTTCTC	59.093	50.000	0.00	0.00	32.33	2.87
2901	3346	3.178046	GAAACCCTTCTCTCCCTTCTCT	58.822	50.000	0.00	0.00	0.00	3.10
2902	3347	2.543037	ACCCTTCTCTCCCTTCTCTC	57.457	55.000	0.00	0.00	0.00	3.20
2903	3348	1.007842	ACCCTTCTCTCCCTTCTCTCC	59.992	57.143	0.00	0.00	0.00	3.71
2904	3349	1.691163	CCCTTCTCTCCCTTCTCTCCC	60.691	61.905	0.00	0.00	0.00	4.30
2905	3350	1.290732	CCTTCTCTCCCTTCTCTCCCT	59.709	57.143	0.00	0.00	0.00	4.20
2906	3351	2.292851	CCTTCTCTCCCTTCTCTCCCTT	60.293	54.545	0.00	0.00	0.00	3.95
2907	3352	2.838637	TCTCTCCCTTCTCTCCCTTC	57.161	55.000	0.00	0.00	0.00	3.46
2908	3353	1.064314	TCTCTCCCTTCTCTCCCTTCG	60.064	57.143	0.00	0.00	0.00	3.79
2909	3354	0.684805	TCTCCCTTCTCTCCCTTCGC	60.685	60.000	0.00	0.00	0.00	4.70
2910	3355	1.681486	CTCCCTTCTCTCCCTTCGCC	61.681	65.000	0.00	0.00	0.00	5.54
2911	3356	2.736826	CCCTTCTCTCCCTTCGCCC	61.737	68.421	0.00	0.00	0.00	6.13
2912	3357	2.736826	CCTTCTCTCCCTTCGCCCC	61.737	68.421	0.00	0.00	0.00	5.80
2913	3358	2.687566	TTCTCTCCCTTCGCCCCC	60.688	66.667	0.00	0.00	0.00	5.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
79	81	8.449251	TTGTAACAAACTTAACGATAAACCCT	57.551	30.769	0.00	0.00	0.00	4.34
98	100	3.744426	ACCACAGCTACATCGTTTGTAAC	59.256	43.478	0.00	0.00	40.27	2.50
103	105	3.472652	TCAAACCACAGCTACATCGTTT	58.527	40.909	0.00	0.00	0.00	3.60
125	127	9.880157	AGACCATCGTAGCTAACTTTATTAAAA	57.120	29.630	0.00	0.00	0.00	1.52
136	138	2.037144	GGGGAAGACCATCGTAGCTAA	58.963	52.381	0.00	0.00	42.91	3.09
144	146	5.743422	GCTCATACTTTAGGGGAAGACCATC	60.743	48.000	0.00	0.00	42.91	3.51
151	153	6.558775	ACATATGAGCTCATACTTTAGGGGAA	59.441	38.462	33.31	13.37	41.15	3.97
161	204	4.453819	GGAGGCAAACATATGAGCTCATAC	59.546	45.833	33.31	20.92	41.15	2.39
183	226	0.609131	ATTCAAACACTGCCCTCGGG	60.609	55.000	0.00	0.00	38.57	5.14
190	233	5.048782	TGTGAAGGTGATATTCAAACACTGC	60.049	40.000	0.00	0.00	38.34	4.40
193	236	6.381801	CCTTGTGAAGGTGATATTCAAACAC	58.618	40.000	0.00	0.00	43.95	3.32
198	242	6.856761	GACCATCCTTGTGAAGGTGATATTCA	60.857	42.308	2.34	0.00	44.91	2.57
229	273	6.358178	TGGCGATGGTCCAAACTATTTTATA	58.642	36.000	0.00	0.00	0.00	0.98
234	278	2.799126	TGGCGATGGTCCAAACTATT	57.201	45.000	0.00	0.00	0.00	1.73
245	289	4.955925	TTAGTTGTTTGTATGGCGATGG	57.044	40.909	0.00	0.00	0.00	3.51
247	291	7.859325	ATAGTTTAGTTGTTTGTATGGCGAT	57.141	32.000	0.00	0.00	0.00	4.58
248	292	7.675962	AATAGTTTAGTTGTTTGTATGGCGA	57.324	32.000	0.00	0.00	0.00	5.54
302	346	5.291905	AGACTTGGCTTTACTGTGTAGTT	57.708	39.130	0.00	0.00	38.36	2.24
334	378	7.814587	GGCTTCAAACATTAAGCTCAACTTTAT	59.185	33.333	6.97	0.00	45.87	1.40
335	379	7.145323	GGCTTCAAACATTAAGCTCAACTTTA	58.855	34.615	6.97	0.00	45.87	1.85
360	409	0.667993	AGTGTGGGCAATTCACAACG	59.332	50.000	0.41	0.00	45.24	4.10
416	465	7.254227	ACAAGCACGAGTTTTAATAGTGAAA	57.746	32.000	0.00	0.00	35.03	2.69
453	502	3.389221	CACACACAACCCCTAAAAATGC	58.611	45.455	0.00	0.00	0.00	3.56
454	503	3.181471	TGCACACACAACCCCTAAAAATG	60.181	43.478	0.00	0.00	0.00	2.32
465	514	2.791567	TGTTTTCGATGCACACACAAC	58.208	42.857	0.00	0.00	0.00	3.32
475	524	7.350110	ACCTATTTTGCATTTGTTTTCGATG	57.650	32.000	0.00	0.00	0.00	3.84
476	525	8.303876	AGTACCTATTTTGCATTTGTTTTCGAT	58.696	29.630	0.00	0.00	0.00	3.59
490	539	4.751060	TGTGGAGCGTAGTACCTATTTTG	58.249	43.478	0.00	0.00	0.00	2.44
720	772	6.042781	ACTGACTTGTGAAGTACCAATAGGAA	59.957	38.462	0.00	0.00	43.03	3.36
789	841	4.142534	GGAAACCCGGTGTATAGAAAAAGC	60.143	45.833	0.00	0.00	0.00	3.51
790	842	5.250982	AGGAAACCCGGTGTATAGAAAAAG	58.749	41.667	0.00	0.00	0.00	2.27
876	939	2.035832	CCCCGTGAAAGTGCATCTTTTT	59.964	45.455	13.21	2.88	45.15	1.94
877	940	1.613437	CCCCGTGAAAGTGCATCTTTT	59.387	47.619	13.21	5.00	45.15	2.27
879	942	1.244019	GCCCCGTGAAAGTGCATCTT	61.244	55.000	0.00	0.00	38.10	2.40
880	943	1.675641	GCCCCGTGAAAGTGCATCT	60.676	57.895	0.00	0.00	0.00	2.90
881	944	2.877691	GCCCCGTGAAAGTGCATC	59.122	61.111	0.00	0.00	0.00	3.91
931	1045	1.078497	GATGCGATGTGGGGTGTGA	60.078	57.895	0.00	0.00	0.00	3.58
932	1046	1.371337	CTGATGCGATGTGGGGTGTG	61.371	60.000	0.00	0.00	0.00	3.82
933	1047	1.078214	CTGATGCGATGTGGGGTGT	60.078	57.895	0.00	0.00	0.00	4.16
934	1048	1.078214	ACTGATGCGATGTGGGGTG	60.078	57.895	0.00	0.00	0.00	4.61
935	1049	1.078214	CACTGATGCGATGTGGGGT	60.078	57.895	0.00	0.00	0.00	4.95
936	1050	0.812811	CTCACTGATGCGATGTGGGG	60.813	60.000	0.00	0.00	33.04	4.96
937	1051	1.434622	GCTCACTGATGCGATGTGGG	61.435	60.000	0.00	0.00	35.47	4.61
1200	1615	1.429463	ACATGTCGAAGAAACCGAGC	58.571	50.000	0.00	0.00	39.69	5.03
1416	1846	4.547367	CACTCGAATCCCGGGGGC	62.547	72.222	23.50	9.47	44.74	5.80
1771	2210	0.177141	GCAGGTATCACGGTTAGGCA	59.823	55.000	0.00	0.00	0.00	4.75
1777	2216	2.577059	CGGTGCAGGTATCACGGT	59.423	61.111	0.00	0.00	35.39	4.83
1812	2251	3.921021	GCATAACCGAGAAGTGGATATCG	59.079	47.826	0.00	0.00	35.02	2.92
1819	2258	1.429148	GCCCGCATAACCGAGAAGTG	61.429	60.000	0.00	0.00	0.00	3.16
1910	2349	0.927537	CACGAAGCGAAACAGTCACA	59.072	50.000	0.00	0.00	0.00	3.58
1921	2360	3.353836	CCCAACACCCACGAAGCG	61.354	66.667	0.00	0.00	0.00	4.68
1945	2384	6.459573	GCGGAAATAGCTTGTCCATTTCAATA	60.460	38.462	16.78	0.00	39.40	1.90
1989	2428	5.703130	GCAAATCCTACTATCATTGGAGACC	59.297	44.000	0.00	0.00	31.59	3.85
2190	2629	9.703892	ATTTTCATCAACCAATTATCGAAAACA	57.296	25.926	0.00	0.00	34.88	2.83
2282	2721	4.397103	TGTTGAAGATGTCATCAAGCATCC	59.603	41.667	15.20	4.84	41.60	3.51
2382	2821	6.803366	TTCAAATAAGGAGGGAGTACTACC	57.197	41.667	17.30	17.30	0.00	3.18
2431	2870	3.187637	CGATACCCTTCTTTCGCAAAACA	59.812	43.478	0.00	0.00	0.00	2.83
2468	2909	2.525368	GGTTAGTTTTGCCCATCCAGT	58.475	47.619	0.00	0.00	0.00	4.00
2477	2918	3.130516	GGGATAAGCAGGGTTAGTTTTGC	59.869	47.826	0.00	0.00	36.83	3.68
2567	3008	0.319900	ACGTGACACATGAGCAGGAC	60.320	55.000	6.37	0.00	0.00	3.85
2644	3085	0.618458	TTTACCCCTGAGCGCAGATT	59.382	50.000	19.95	4.92	45.17	2.40
2704	3145	6.938596	TGAAAGAAAAGCATGAGATCTTGAGA	59.061	34.615	0.00	0.00	31.14	3.27
2884	3329	1.691163	GGGAGAGAAGGGAGAGAAGGG	60.691	61.905	0.00	0.00	0.00	3.95
2887	3332	2.621929	CGAAGGGAGAGAAGGGAGAGAA	60.622	54.545	0.00	0.00	0.00	2.87
2888	3333	1.064314	CGAAGGGAGAGAAGGGAGAGA	60.064	57.143	0.00	0.00	0.00	3.10
2889	3334	1.398692	CGAAGGGAGAGAAGGGAGAG	58.601	60.000	0.00	0.00	0.00	3.20
2890	3335	0.684805	GCGAAGGGAGAGAAGGGAGA	60.685	60.000	0.00	0.00	0.00	3.71
2891	3336	1.681486	GGCGAAGGGAGAGAAGGGAG	61.681	65.000	0.00	0.00	0.00	4.30
2892	3337	1.686110	GGCGAAGGGAGAGAAGGGA	60.686	63.158	0.00	0.00	0.00	4.20
2893	3338	2.736826	GGGCGAAGGGAGAGAAGGG	61.737	68.421	0.00	0.00	0.00	3.95
2894	3339	2.736826	GGGGCGAAGGGAGAGAAGG	61.737	68.421	0.00	0.00	0.00	3.46
2895	3340	2.736826	GGGGGCGAAGGGAGAGAAG	61.737	68.421	0.00	0.00	0.00	2.85
2896	3341	2.687566	GGGGGCGAAGGGAGAGAA	60.688	66.667	0.00	0.00	0.00	2.87

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.