Multiple sequence alignment - TraesCS6D01G062500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G062500 chr6D 100.000 6961 0 0 1 6961 29110259 29117219 0.000000e+00 12855
1 TraesCS6D01G062500 chr6D 90.964 2634 131 35 3851 6421 376946489 376943900 0.000000e+00 3446
2 TraesCS6D01G062500 chr6D 90.964 2634 131 35 3851 6421 376975383 376972794 0.000000e+00 3446
3 TraesCS6D01G062500 chr6D 90.922 1377 97 11 3137 4512 13947767 13946418 0.000000e+00 1825
4 TraesCS6D01G062500 chr6D 88.483 1094 77 22 807 1872 376949803 376948731 0.000000e+00 1277
5 TraesCS6D01G062500 chr6D 87.147 1097 81 27 812 1872 376978861 376977789 0.000000e+00 1190
6 TraesCS6D01G062500 chr6D 89.110 753 74 4 3137 3888 13959050 13958305 0.000000e+00 929
7 TraesCS6D01G062500 chr6D 91.461 445 26 3 1931 2373 376977460 376977026 9.990000e-168 601
8 TraesCS6D01G062500 chr6D 89.738 458 21 6 1918 2373 376948541 376948108 4.710000e-156 562
9 TraesCS6D01G062500 chr6D 93.750 320 14 3 2483 2797 376977025 376976707 6.320000e-130 475
10 TraesCS6D01G062500 chr6D 93.438 320 15 3 2483 2797 376948107 376947789 2.940000e-128 470
11 TraesCS6D01G062500 chr6D 87.715 407 24 12 2772 3155 376947766 376947363 1.060000e-122 451
12 TraesCS6D01G062500 chr6D 90.173 346 27 4 2772 3111 376976660 376976316 1.780000e-120 444
13 TraesCS6D01G062500 chr6D 96.787 249 8 0 260 508 445911216 445910968 3.880000e-112 416
14 TraesCS6D01G062500 chr6D 95.935 246 10 0 260 505 78510809 78510564 3.910000e-107 399
15 TraesCS6D01G062500 chr6D 83.898 236 27 10 1910 2138 347891151 347890920 1.520000e-51 215
16 TraesCS6D01G062500 chr6D 83.784 185 22 5 6472 6654 376943893 376943715 1.200000e-37 169
17 TraesCS6D01G062500 chr6D 83.784 185 22 5 6472 6654 376972787 376972609 1.200000e-37 169
18 TraesCS6D01G062500 chr6A 95.471 4593 127 27 1874 6441 33296293 33291757 0.000000e+00 7254
19 TraesCS6D01G062500 chr6A 90.650 2631 153 42 3851 6421 518598878 518596281 0.000000e+00 3410
20 TraesCS6D01G062500 chr6A 90.478 2636 146 38 3851 6421 518550786 518548191 0.000000e+00 3380
21 TraesCS6D01G062500 chr6A 87.384 1078 77 29 807 1872 518554041 518553011 0.000000e+00 1182
22 TraesCS6D01G062500 chr6A 88.889 774 63 15 1112 1873 518601863 518601101 0.000000e+00 931
23 TraesCS6D01G062500 chr6A 86.989 807 57 11 4467 5255 14522588 14521812 0.000000e+00 865
24 TraesCS6D01G062500 chr6A 88.343 712 46 15 2483 3159 518552371 518551662 0.000000e+00 821
25 TraesCS6D01G062500 chr6A 90.830 458 30 3 1918 2373 518552819 518552372 2.780000e-168 603
26 TraesCS6D01G062500 chr6A 90.830 458 29 4 1919 2373 518600909 518600462 9.990000e-168 601
27 TraesCS6D01G062500 chr6A 92.677 396 16 9 692 1080 33298562 33298173 6.100000e-155 558
28 TraesCS6D01G062500 chr6A 90.102 394 32 4 2772 3159 518600121 518599729 8.060000e-139 505
29 TraesCS6D01G062500 chr6A 96.259 294 9 2 1580 1872 33296764 33296472 1.360000e-131 481
30 TraesCS6D01G062500 chr6A 93.125 320 15 4 2483 2797 518600461 518600144 4.920000e-126 462
31 TraesCS6D01G062500 chr6A 92.308 221 16 1 1188 1407 33298170 33297950 5.240000e-81 313
32 TraesCS6D01G062500 chr6A 88.846 260 22 7 2 259 33301597 33301343 5.240000e-81 313
33 TraesCS6D01G062500 chr6A 86.765 272 19 10 761 1026 518602535 518602275 3.180000e-73 287
34 TraesCS6D01G062500 chr6A 92.857 182 13 0 6435 6616 33291701 33291520 1.490000e-66 265
35 TraesCS6D01G062500 chr6A 87.678 211 15 5 6648 6847 33289789 33289579 1.170000e-57 235
36 TraesCS6D01G062500 chr6A 87.634 186 11 4 1405 1589 33297882 33297708 9.150000e-49 206
37 TraesCS6D01G062500 chr6A 87.151 179 18 4 508 684 33301350 33301175 1.530000e-46 198
38 TraesCS6D01G062500 chr6A 85.256 156 23 0 6472 6627 518596274 518596119 2.010000e-35 161
39 TraesCS6D01G062500 chr6A 92.553 94 7 0 6472 6565 518548184 518548091 1.220000e-27 135
40 TraesCS6D01G062500 chr6B 96.575 3241 77 10 1874 5107 60607287 60604074 0.000000e+00 5339
41 TraesCS6D01G062500 chr6B 90.716 2639 135 44 3851 6421 563134689 563132093 0.000000e+00 3415
42 TraesCS6D01G062500 chr6B 90.849 2251 123 33 4220 6421 563146205 563143989 0.000000e+00 2939
43 TraesCS6D01G062500 chr6B 92.534 1701 94 7 5155 6847 60604074 60602399 0.000000e+00 2407
44 TraesCS6D01G062500 chr6B 89.116 1617 137 16 3139 4740 25455129 25453537 0.000000e+00 1975
45 TraesCS6D01G062500 chr6B 88.992 1617 139 16 3139 4740 25429837 25428245 0.000000e+00 1964
46 TraesCS6D01G062500 chr6B 89.649 1169 98 11 3137 4292 25376389 25375231 0.000000e+00 1467
47 TraesCS6D01G062500 chr6B 88.584 1095 75 24 807 1872 563138033 563136960 0.000000e+00 1284
48 TraesCS6D01G062500 chr6B 88.434 1098 71 24 810 1872 563149831 563148755 0.000000e+00 1273
49 TraesCS6D01G062500 chr6B 88.246 1089 84 21 3668 4740 25408091 25407031 0.000000e+00 1262
50 TraesCS6D01G062500 chr6B 89.463 987 62 24 766 1738 60608471 60607513 0.000000e+00 1208
51 TraesCS6D01G062500 chr6B 89.089 834 79 10 3137 3966 25433696 25432871 0.000000e+00 1026
52 TraesCS6D01G062500 chr6B 92.967 455 28 4 1922 2373 563148538 563148085 0.000000e+00 660
53 TraesCS6D01G062500 chr6B 89.507 467 26 12 1918 2373 563136768 563136314 2.820000e-158 569
54 TraesCS6D01G062500 chr6B 89.136 405 26 5 2772 3158 563147745 563147341 8.120000e-134 488
55 TraesCS6D01G062500 chr6B 93.438 320 15 3 2483 2797 563136313 563135995 2.940000e-128 470
56 TraesCS6D01G062500 chr6B 93.082 318 18 3 2483 2797 563148084 563147768 4.920000e-126 462
57 TraesCS6D01G062500 chr6B 89.916 357 19 4 2772 3111 563135972 563135616 1.780000e-120 444
58 TraesCS6D01G062500 chr6B 82.745 255 34 10 1892 2138 697533142 697533394 1.180000e-52 219
59 TraesCS6D01G062500 chr6B 85.870 184 18 6 6472 6654 563132086 563131910 9.220000e-44 189
60 TraesCS6D01G062500 chrUn 91.607 834 51 9 3917 4740 355299268 355298444 0.000000e+00 1134
61 TraesCS6D01G062500 chrUn 89.037 675 66 4 3215 3888 469507805 469507138 0.000000e+00 830
62 TraesCS6D01G062500 chrUn 91.850 319 20 3 4937 5255 394744281 394744593 2.300000e-119 440
63 TraesCS6D01G062500 chrUn 96.748 246 7 1 260 505 111200080 111199836 6.500000e-110 409
64 TraesCS6D01G062500 chr3D 97.154 246 7 0 260 505 272911661 272911906 3.880000e-112 416
65 TraesCS6D01G062500 chr3D 95.935 246 10 0 263 508 434208523 434208278 3.910000e-107 399
66 TraesCS6D01G062500 chr3D 95.582 249 11 0 258 506 548471637 548471885 3.910000e-107 399
67 TraesCS6D01G062500 chr3D 82.222 135 20 4 2632 2765 352617550 352617419 5.710000e-21 113
68 TraesCS6D01G062500 chr7D 96.721 244 8 0 262 505 90838131 90837888 2.340000e-109 407
69 TraesCS6D01G062500 chr7D 95.600 250 7 3 259 507 80042213 80041967 1.410000e-106 398
70 TraesCS6D01G062500 chr1B 95.582 249 11 0 257 505 135830738 135830490 3.910000e-107 399
71 TraesCS6D01G062500 chr5B 82.937 252 35 8 1892 2137 411863464 411863713 3.270000e-53 220
72 TraesCS6D01G062500 chr7A 81.923 260 39 8 1886 2139 526511213 526511470 5.470000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G062500 chr6D 29110259 29117219 6960 False 12855.000000 12855 100.000000 1 6961 1 chr6D.!!$F1 6960
1 TraesCS6D01G062500 chr6D 13946418 13947767 1349 True 1825.000000 1825 90.922000 3137 4512 1 chr6D.!!$R1 1375
2 TraesCS6D01G062500 chr6D 376943715 376949803 6088 True 1062.500000 3446 89.020333 807 6654 6 chr6D.!!$R6 5847
3 TraesCS6D01G062500 chr6D 376972609 376978861 6252 True 1054.166667 3446 89.546500 812 6654 6 chr6D.!!$R7 5842
4 TraesCS6D01G062500 chr6D 13958305 13959050 745 True 929.000000 929 89.110000 3137 3888 1 chr6D.!!$R2 751
5 TraesCS6D01G062500 chr6A 518548091 518554041 5950 True 1224.200000 3380 89.917600 807 6565 5 chr6A.!!$R3 5758
6 TraesCS6D01G062500 chr6A 33289579 33301597 12018 True 1091.444444 7254 91.209000 2 6847 9 chr6A.!!$R2 6845
7 TraesCS6D01G062500 chr6A 518596119 518602535 6416 True 908.142857 3410 89.373857 761 6627 7 chr6A.!!$R4 5866
8 TraesCS6D01G062500 chr6A 14521812 14522588 776 True 865.000000 865 86.989000 4467 5255 1 chr6A.!!$R1 788
9 TraesCS6D01G062500 chr6B 60602399 60608471 6072 True 2984.666667 5339 92.857333 766 6847 3 chr6B.!!$R5 6081
10 TraesCS6D01G062500 chr6B 25453537 25455129 1592 True 1975.000000 1975 89.116000 3139 4740 1 chr6B.!!$R3 1601
11 TraesCS6D01G062500 chr6B 25428245 25433696 5451 True 1495.000000 1964 89.040500 3137 4740 2 chr6B.!!$R4 1603
12 TraesCS6D01G062500 chr6B 25375231 25376389 1158 True 1467.000000 1467 89.649000 3137 4292 1 chr6B.!!$R1 1155
13 TraesCS6D01G062500 chr6B 25407031 25408091 1060 True 1262.000000 1262 88.246000 3668 4740 1 chr6B.!!$R2 1072
14 TraesCS6D01G062500 chr6B 563143989 563149831 5842 True 1164.400000 2939 90.893600 810 6421 5 chr6B.!!$R7 5611
15 TraesCS6D01G062500 chr6B 563131910 563138033 6123 True 1061.833333 3415 89.671833 807 6654 6 chr6B.!!$R6 5847
16 TraesCS6D01G062500 chrUn 355298444 355299268 824 True 1134.000000 1134 91.607000 3917 4740 1 chrUn.!!$R2 823
17 TraesCS6D01G062500 chrUn 469507138 469507805 667 True 830.000000 830 89.037000 3215 3888 1 chrUn.!!$R3 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.030504 TGCGCAATGAACCAACACTG 59.969 50.000 8.16 0.0 0.00 3.66 F
506 507 0.105453 AGCACCAGATATCCTCCCGT 60.105 55.000 0.00 0.0 0.00 5.28 F
1055 3683 0.119155 TCCAAGTCAGGTGATCCCCT 59.881 55.000 0.00 0.0 34.21 4.79 F
1929 6150 0.322008 GCCACACTTGCCTTAGCTCT 60.322 55.000 0.00 0.0 40.80 4.09 F
2292 6659 1.321474 TTCTACCCGTGTCAGAACGT 58.679 50.000 0.00 0.0 42.01 3.99 F
2454 6821 1.527034 GCTGATGAGTCTTTGTGCCA 58.473 50.000 0.00 0.0 0.00 4.92 F
2517 6884 1.992667 TCGCAGCATCTTAGAAACACG 59.007 47.619 0.00 0.0 0.00 4.49 F
3155 7802 2.273449 CGCCCAGCCATCTCCTTT 59.727 61.111 0.00 0.0 0.00 3.11 F
3211 7975 3.400054 GGGTGGCGGCTACCTTCT 61.400 66.667 30.68 0.0 38.30 2.85 F
4414 13211 5.417811 CCAATTTATGGCTGTGCATAACAA 58.582 37.500 0.00 0.0 43.80 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 5691 0.249405 ACAATGCCCAGCAACGTTTG 60.249 50.000 0.00 0.0 43.62 2.93 R
2090 6433 0.975040 ACCTTGCCACACTTTGCCAA 60.975 50.000 0.00 0.0 0.00 4.52 R
2805 7296 1.692519 AGATATAGGCGGTGGTTGTCC 59.307 52.381 0.00 0.0 0.00 4.02 R
3349 8113 0.843309 TGGGTTCAGTGTGTGGATGT 59.157 50.000 0.00 0.0 0.00 3.06 R
3595 8360 5.516339 CAGGATCACAAAACTGAACAACAAC 59.484 40.000 0.00 0.0 32.86 3.32 R
4414 13211 5.927281 AAGCAGCTCAATGATTACCATTT 57.073 34.783 0.00 0.0 42.55 2.32 R
4571 13376 8.435931 AATACAGGCAGTGATATATGAGGTTA 57.564 34.615 0.00 0.0 0.00 2.85 R
4773 13605 1.311859 TGCAAGACACAGAAAGGCAG 58.688 50.000 0.00 0.0 0.00 4.85 R
5143 13990 4.160252 GGGAATCAGCTTGCCTATTTTTCA 59.840 41.667 0.00 0.0 41.91 2.69 R
5965 14869 1.068741 CCCGGATTACCTGTGTAGCTC 59.931 57.143 0.73 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.480555 CCGACGCAATGAGCCAAC 59.519 61.111 0.00 0.00 41.38 3.77
20 21 1.568612 CGACGCAATGAGCCAACACT 61.569 55.000 0.00 0.00 41.38 3.55
31 32 4.211125 TGAGCCAACACTGTTGGAATAAA 58.789 39.130 35.60 17.56 42.06 1.40
82 83 3.498397 TCGCAGGACTTCAACTGAAATTC 59.502 43.478 0.00 0.00 36.86 2.17
83 84 3.250762 CGCAGGACTTCAACTGAAATTCA 59.749 43.478 0.00 0.00 36.86 2.57
98 99 4.877823 TGAAATTCAGAACATGAGGATCCG 59.122 41.667 5.98 0.00 39.68 4.18
112 113 3.642778 ATCCGAAGTGTCGTGCCCG 62.643 63.158 0.00 0.00 46.21 6.13
124 125 0.373716 CGTGCCCGATTAAAGACTGC 59.626 55.000 0.00 0.00 35.63 4.40
137 138 0.593128 AGACTGCGCAATGAACCAAC 59.407 50.000 13.05 0.00 0.00 3.77
140 141 0.311790 CTGCGCAATGAACCAACACT 59.688 50.000 13.05 0.00 0.00 3.55
141 142 0.030504 TGCGCAATGAACCAACACTG 59.969 50.000 8.16 0.00 0.00 3.66
148 149 4.740334 GCAATGAACCAACACTGTTGGAAT 60.740 41.667 37.12 27.15 42.06 3.01
154 155 7.560368 TGAACCAACACTGTTGGAATAAATTT 58.440 30.769 37.12 23.15 42.06 1.82
195 196 2.815657 TATTACATTGCAACGCACGG 57.184 45.000 0.00 0.00 38.71 4.94
196 197 1.160989 ATTACATTGCAACGCACGGA 58.839 45.000 0.00 0.00 38.71 4.69
197 198 0.236187 TTACATTGCAACGCACGGAC 59.764 50.000 0.00 0.00 38.71 4.79
198 199 0.880718 TACATTGCAACGCACGGACA 60.881 50.000 0.00 0.00 38.71 4.02
199 200 1.209898 CATTGCAACGCACGGACAT 59.790 52.632 0.00 0.00 38.71 3.06
200 201 1.066656 CATTGCAACGCACGGACATG 61.067 55.000 0.00 0.00 38.71 3.21
201 202 1.514678 ATTGCAACGCACGGACATGT 61.515 50.000 0.00 0.00 38.71 3.21
202 203 2.127270 GCAACGCACGGACATGTG 60.127 61.111 1.15 0.00 42.81 3.21
203 204 2.892334 GCAACGCACGGACATGTGT 61.892 57.895 1.15 0.00 45.12 3.72
245 246 8.252964 ACTAAAATTCTAATCAGAACACGACC 57.747 34.615 0.00 0.00 43.50 4.79
246 247 6.496338 AAAATTCTAATCAGAACACGACCC 57.504 37.500 0.00 0.00 43.50 4.46
247 248 4.819105 ATTCTAATCAGAACACGACCCA 57.181 40.909 0.00 0.00 43.50 4.51
248 249 4.819105 TTCTAATCAGAACACGACCCAT 57.181 40.909 0.00 0.00 35.82 4.00
249 250 4.123497 TCTAATCAGAACACGACCCATG 57.877 45.455 0.00 0.00 0.00 3.66
250 251 2.859165 AATCAGAACACGACCCATGT 57.141 45.000 0.00 0.00 0.00 3.21
251 252 3.973206 AATCAGAACACGACCCATGTA 57.027 42.857 0.00 0.00 0.00 2.29
252 253 4.487714 AATCAGAACACGACCCATGTAT 57.512 40.909 0.00 0.00 0.00 2.29
253 254 3.520290 TCAGAACACGACCCATGTATC 57.480 47.619 0.00 0.00 0.00 2.24
254 255 2.829120 TCAGAACACGACCCATGTATCA 59.171 45.455 0.00 0.00 0.00 2.15
255 256 2.930040 CAGAACACGACCCATGTATCAC 59.070 50.000 0.00 0.00 0.00 3.06
256 257 2.565391 AGAACACGACCCATGTATCACA 59.435 45.455 0.00 0.00 0.00 3.58
257 258 3.197766 AGAACACGACCCATGTATCACAT 59.802 43.478 0.00 0.00 39.91 3.21
272 273 6.306199 TGTATCACATGGGGAAAATATCAGG 58.694 40.000 0.00 0.00 0.00 3.86
273 274 4.879295 TCACATGGGGAAAATATCAGGT 57.121 40.909 0.00 0.00 0.00 4.00
274 275 4.535781 TCACATGGGGAAAATATCAGGTG 58.464 43.478 0.00 0.00 41.43 4.00
275 276 3.068590 CACATGGGGAAAATATCAGGTGC 59.931 47.826 0.00 0.00 35.65 5.01
276 277 3.052642 ACATGGGGAAAATATCAGGTGCT 60.053 43.478 0.00 0.00 0.00 4.40
277 278 4.167892 ACATGGGGAAAATATCAGGTGCTA 59.832 41.667 0.00 0.00 0.00 3.49
278 279 4.164843 TGGGGAAAATATCAGGTGCTAC 57.835 45.455 0.00 0.00 0.00 3.58
279 280 3.139077 GGGGAAAATATCAGGTGCTACG 58.861 50.000 0.00 0.00 0.00 3.51
280 281 3.139077 GGGAAAATATCAGGTGCTACGG 58.861 50.000 0.00 0.00 0.00 4.02
281 282 3.139077 GGAAAATATCAGGTGCTACGGG 58.861 50.000 0.00 0.00 0.00 5.28
282 283 3.181458 GGAAAATATCAGGTGCTACGGGA 60.181 47.826 0.00 0.00 0.00 5.14
283 284 3.753294 AAATATCAGGTGCTACGGGAG 57.247 47.619 0.00 0.00 0.00 4.30
292 293 4.019983 CTACGGGAGCACCTGAGT 57.980 61.111 16.69 8.63 44.87 3.41
293 294 2.277858 CTACGGGAGCACCTGAGTT 58.722 57.895 16.69 0.00 44.87 3.01
294 295 0.608640 CTACGGGAGCACCTGAGTTT 59.391 55.000 16.69 0.00 44.87 2.66
295 296 1.822990 CTACGGGAGCACCTGAGTTTA 59.177 52.381 16.69 0.00 44.87 2.01
296 297 0.608640 ACGGGAGCACCTGAGTTTAG 59.391 55.000 16.69 0.00 44.87 1.85
297 298 0.108138 CGGGAGCACCTGAGTTTAGG 60.108 60.000 2.23 0.00 44.87 2.69
305 306 2.859165 CCTGAGTTTAGGTGCTCCAA 57.141 50.000 7.70 0.00 35.89 3.53
306 307 2.704572 CCTGAGTTTAGGTGCTCCAAG 58.295 52.381 7.70 0.00 35.89 3.61
307 308 2.303022 CCTGAGTTTAGGTGCTCCAAGA 59.697 50.000 7.70 0.00 35.89 3.02
308 309 3.594134 CTGAGTTTAGGTGCTCCAAGAG 58.406 50.000 7.70 0.00 35.89 2.85
317 318 4.511636 CTCCAAGAGCTTCTCGGC 57.488 61.111 0.00 0.00 35.36 5.54
318 319 1.153469 CTCCAAGAGCTTCTCGGCC 60.153 63.158 0.00 0.00 35.36 6.13
319 320 1.892819 CTCCAAGAGCTTCTCGGCCA 61.893 60.000 2.24 0.00 35.36 5.36
320 321 1.222936 CCAAGAGCTTCTCGGCCAT 59.777 57.895 2.24 0.00 35.36 4.40
321 322 0.393537 CCAAGAGCTTCTCGGCCATT 60.394 55.000 2.24 0.00 35.36 3.16
322 323 0.731417 CAAGAGCTTCTCGGCCATTG 59.269 55.000 2.24 0.00 35.36 2.82
323 324 0.393537 AAGAGCTTCTCGGCCATTGG 60.394 55.000 2.24 0.00 35.36 3.16
324 325 1.221840 GAGCTTCTCGGCCATTGGA 59.778 57.895 6.95 0.00 0.00 3.53
325 326 0.179034 GAGCTTCTCGGCCATTGGAT 60.179 55.000 6.95 0.00 0.00 3.41
326 327 0.179034 AGCTTCTCGGCCATTGGATC 60.179 55.000 6.95 0.00 0.00 3.36
327 328 0.179034 GCTTCTCGGCCATTGGATCT 60.179 55.000 6.95 0.00 0.00 2.75
328 329 1.590932 CTTCTCGGCCATTGGATCTG 58.409 55.000 6.95 0.00 0.00 2.90
329 330 1.139654 CTTCTCGGCCATTGGATCTGA 59.860 52.381 6.95 0.00 0.00 3.27
330 331 1.203237 TCTCGGCCATTGGATCTGAA 58.797 50.000 6.95 0.00 0.00 3.02
331 332 1.559219 TCTCGGCCATTGGATCTGAAA 59.441 47.619 6.95 0.00 0.00 2.69
332 333 2.173356 TCTCGGCCATTGGATCTGAAAT 59.827 45.455 6.95 0.00 0.00 2.17
333 334 2.551459 CTCGGCCATTGGATCTGAAATC 59.449 50.000 6.95 0.00 0.00 2.17
334 335 1.610522 CGGCCATTGGATCTGAAATCC 59.389 52.381 6.95 0.00 38.66 3.01
335 336 2.669781 GGCCATTGGATCTGAAATCCA 58.330 47.619 6.95 2.63 45.71 3.41
341 342 2.985896 TGGATCTGAAATCCAACGGTC 58.014 47.619 4.30 0.00 44.54 4.79
342 343 2.304470 TGGATCTGAAATCCAACGGTCA 59.696 45.455 4.30 0.00 44.54 4.02
343 344 3.054434 TGGATCTGAAATCCAACGGTCAT 60.054 43.478 4.30 0.00 44.54 3.06
344 345 3.561725 GGATCTGAAATCCAACGGTCATC 59.438 47.826 0.00 0.00 38.09 2.92
345 346 3.981071 TCTGAAATCCAACGGTCATCT 57.019 42.857 0.00 0.00 0.00 2.90
346 347 5.453339 GGATCTGAAATCCAACGGTCATCTA 60.453 44.000 0.00 0.00 38.09 1.98
347 348 4.755411 TCTGAAATCCAACGGTCATCTAC 58.245 43.478 0.00 0.00 0.00 2.59
348 349 4.221924 TCTGAAATCCAACGGTCATCTACA 59.778 41.667 0.00 0.00 0.00 2.74
349 350 4.503910 TGAAATCCAACGGTCATCTACAG 58.496 43.478 0.00 0.00 0.00 2.74
350 351 4.221924 TGAAATCCAACGGTCATCTACAGA 59.778 41.667 0.00 0.00 0.00 3.41
351 352 5.104941 TGAAATCCAACGGTCATCTACAGAT 60.105 40.000 0.00 0.00 34.56 2.90
364 365 4.147449 CAGATGCGCTGGACCCGA 62.147 66.667 9.73 0.00 41.07 5.14
365 366 3.157252 AGATGCGCTGGACCCGAT 61.157 61.111 9.73 0.00 0.00 4.18
366 367 2.203070 GATGCGCTGGACCCGATT 60.203 61.111 9.73 0.00 0.00 3.34
367 368 1.819632 GATGCGCTGGACCCGATTT 60.820 57.895 9.73 0.00 0.00 2.17
368 369 2.051804 GATGCGCTGGACCCGATTTG 62.052 60.000 9.73 0.00 0.00 2.32
369 370 4.179579 GCGCTGGACCCGATTTGC 62.180 66.667 0.00 0.00 0.00 3.68
370 371 2.745884 CGCTGGACCCGATTTGCA 60.746 61.111 0.00 0.00 0.00 4.08
371 372 2.331893 CGCTGGACCCGATTTGCAA 61.332 57.895 0.00 0.00 0.00 4.08
372 373 1.656818 CGCTGGACCCGATTTGCAAT 61.657 55.000 0.00 0.00 0.00 3.56
373 374 1.388547 GCTGGACCCGATTTGCAATA 58.611 50.000 0.00 0.00 0.00 1.90
374 375 1.065551 GCTGGACCCGATTTGCAATAC 59.934 52.381 0.00 0.00 0.00 1.89
375 376 1.676006 CTGGACCCGATTTGCAATACC 59.324 52.381 0.00 0.00 0.00 2.73
376 377 1.004862 TGGACCCGATTTGCAATACCA 59.995 47.619 0.00 0.08 0.00 3.25
377 378 2.096248 GGACCCGATTTGCAATACCAA 58.904 47.619 0.00 0.00 0.00 3.67
378 379 2.494073 GGACCCGATTTGCAATACCAAA 59.506 45.455 0.00 0.00 38.87 3.28
379 380 3.132111 GGACCCGATTTGCAATACCAAAT 59.868 43.478 0.00 0.22 45.37 2.32
380 381 4.382577 GGACCCGATTTGCAATACCAAATT 60.383 41.667 0.00 0.00 43.41 1.82
381 382 5.159273 ACCCGATTTGCAATACCAAATTT 57.841 34.783 0.00 0.00 43.41 1.82
382 383 5.555966 ACCCGATTTGCAATACCAAATTTT 58.444 33.333 0.00 0.00 43.41 1.82
383 384 6.000840 ACCCGATTTGCAATACCAAATTTTT 58.999 32.000 0.00 0.00 43.41 1.94
384 385 6.072783 ACCCGATTTGCAATACCAAATTTTTG 60.073 34.615 0.00 0.00 43.41 2.44
397 398 5.497635 CAAATTTTTGGGGGTGTTCTTTG 57.502 39.130 0.00 0.00 34.59 2.77
398 399 5.189180 CAAATTTTTGGGGGTGTTCTTTGA 58.811 37.500 0.00 0.00 34.59 2.69
399 400 5.443230 AATTTTTGGGGGTGTTCTTTGAA 57.557 34.783 0.00 0.00 0.00 2.69
400 401 5.645056 ATTTTTGGGGGTGTTCTTTGAAT 57.355 34.783 0.00 0.00 0.00 2.57
401 402 6.755542 ATTTTTGGGGGTGTTCTTTGAATA 57.244 33.333 0.00 0.00 0.00 1.75
402 403 6.561519 TTTTTGGGGGTGTTCTTTGAATAA 57.438 33.333 0.00 0.00 0.00 1.40
403 404 6.561519 TTTTGGGGGTGTTCTTTGAATAAA 57.438 33.333 0.00 0.00 0.00 1.40
404 405 6.561519 TTTGGGGGTGTTCTTTGAATAAAA 57.438 33.333 0.00 0.00 0.00 1.52
405 406 5.799827 TGGGGGTGTTCTTTGAATAAAAG 57.200 39.130 0.00 0.00 45.76 2.27
406 407 4.039852 TGGGGGTGTTCTTTGAATAAAAGC 59.960 41.667 0.00 0.00 44.30 3.51
407 408 4.234574 GGGGTGTTCTTTGAATAAAAGCG 58.765 43.478 0.00 0.00 44.30 4.68
408 409 3.673338 GGGTGTTCTTTGAATAAAAGCGC 59.327 43.478 0.00 0.00 44.30 5.92
409 410 3.360758 GGTGTTCTTTGAATAAAAGCGCG 59.639 43.478 0.00 0.00 44.30 6.86
410 411 4.215965 GTGTTCTTTGAATAAAAGCGCGA 58.784 39.130 12.10 0.00 44.30 5.87
411 412 4.318332 GTGTTCTTTGAATAAAAGCGCGAG 59.682 41.667 12.10 0.00 44.30 5.03
425 426 3.416490 CGAGCTCTCTCCTCGGTC 58.584 66.667 12.85 0.00 46.15 4.79
426 427 1.153249 CGAGCTCTCTCCTCGGTCT 60.153 63.158 12.85 0.00 46.15 3.85
427 428 0.746563 CGAGCTCTCTCCTCGGTCTT 60.747 60.000 12.85 0.00 46.15 3.01
428 429 1.021968 GAGCTCTCTCCTCGGTCTTC 58.978 60.000 6.43 0.00 33.19 2.87
429 430 0.746563 AGCTCTCTCCTCGGTCTTCG 60.747 60.000 0.00 0.00 40.90 3.79
430 431 0.745128 GCTCTCTCCTCGGTCTTCGA 60.745 60.000 0.00 0.00 46.77 3.71
440 441 3.972950 TCGGTCTTCGAATCTCAGATC 57.027 47.619 0.00 0.00 45.86 2.75
441 442 3.546724 TCGGTCTTCGAATCTCAGATCT 58.453 45.455 0.00 0.00 45.86 2.75
442 443 4.704965 TCGGTCTTCGAATCTCAGATCTA 58.295 43.478 0.00 0.00 45.86 1.98
443 444 5.123936 TCGGTCTTCGAATCTCAGATCTAA 58.876 41.667 0.00 0.00 45.86 2.10
444 445 5.007823 TCGGTCTTCGAATCTCAGATCTAAC 59.992 44.000 0.00 0.00 45.86 2.34
445 446 5.209240 GGTCTTCGAATCTCAGATCTAACG 58.791 45.833 0.00 0.00 0.00 3.18
446 447 5.209240 GTCTTCGAATCTCAGATCTAACGG 58.791 45.833 0.00 0.00 0.00 4.44
447 448 4.882427 TCTTCGAATCTCAGATCTAACGGT 59.118 41.667 0.00 0.00 0.00 4.83
448 449 5.357314 TCTTCGAATCTCAGATCTAACGGTT 59.643 40.000 0.00 0.00 0.00 4.44
449 450 4.921547 TCGAATCTCAGATCTAACGGTTG 58.078 43.478 3.07 0.00 0.00 3.77
450 451 4.638865 TCGAATCTCAGATCTAACGGTTGA 59.361 41.667 3.07 0.00 0.00 3.18
451 452 5.124936 TCGAATCTCAGATCTAACGGTTGAA 59.875 40.000 3.07 0.00 0.00 2.69
452 453 5.805486 CGAATCTCAGATCTAACGGTTGAAA 59.195 40.000 3.07 0.00 0.00 2.69
453 454 6.310467 CGAATCTCAGATCTAACGGTTGAAAA 59.690 38.462 3.07 0.00 0.00 2.29
454 455 7.463383 CGAATCTCAGATCTAACGGTTGAAAAG 60.463 40.741 3.07 0.00 0.00 2.27
455 456 4.929808 TCTCAGATCTAACGGTTGAAAAGC 59.070 41.667 3.07 0.00 41.84 3.51
456 457 4.894784 TCAGATCTAACGGTTGAAAAGCT 58.105 39.130 3.07 0.00 43.41 3.74
457 458 4.929808 TCAGATCTAACGGTTGAAAAGCTC 59.070 41.667 3.07 0.00 43.41 4.09
458 459 4.093556 CAGATCTAACGGTTGAAAAGCTCC 59.906 45.833 3.07 0.00 43.41 4.70
459 460 3.764237 TCTAACGGTTGAAAAGCTCCT 57.236 42.857 3.07 0.00 43.41 3.69
460 461 3.399330 TCTAACGGTTGAAAAGCTCCTG 58.601 45.455 3.07 0.00 43.41 3.86
461 462 1.318576 AACGGTTGAAAAGCTCCTGG 58.681 50.000 0.00 0.00 43.41 4.45
462 463 0.472471 ACGGTTGAAAAGCTCCTGGA 59.528 50.000 0.00 0.00 43.41 3.86
463 464 1.160137 CGGTTGAAAAGCTCCTGGAG 58.840 55.000 19.55 19.55 43.41 3.86
473 474 2.913463 CTCCTGGAGCACCTGATCT 58.087 57.895 11.42 0.00 37.31 2.75
474 475 1.202330 CTCCTGGAGCACCTGATCTT 58.798 55.000 11.42 0.00 37.31 2.40
475 476 2.392662 CTCCTGGAGCACCTGATCTTA 58.607 52.381 11.42 0.00 37.31 2.10
476 477 2.364970 CTCCTGGAGCACCTGATCTTAG 59.635 54.545 11.42 0.00 37.31 2.18
477 478 1.415659 CCTGGAGCACCTGATCTTAGG 59.584 57.143 8.65 0.00 43.71 2.69
485 486 0.390860 CCTGATCTTAGGTGCTCCCG 59.609 60.000 0.00 0.00 38.74 5.14
486 487 1.115467 CTGATCTTAGGTGCTCCCGT 58.885 55.000 0.00 0.00 38.74 5.28
487 488 2.307768 CTGATCTTAGGTGCTCCCGTA 58.692 52.381 0.00 0.00 38.74 4.02
488 489 2.294791 CTGATCTTAGGTGCTCCCGTAG 59.705 54.545 0.00 0.00 38.74 3.51
501 502 1.147191 TCCCGTAGCACCAGATATCCT 59.853 52.381 0.00 0.00 0.00 3.24
503 504 1.546476 CCGTAGCACCAGATATCCTCC 59.454 57.143 0.00 0.00 0.00 4.30
506 507 0.105453 AGCACCAGATATCCTCCCGT 60.105 55.000 0.00 0.00 0.00 5.28
514 515 5.201243 CCAGATATCCTCCCGTATCACATA 58.799 45.833 0.00 0.00 31.29 2.29
518 519 2.322658 TCCTCCCGTATCACATAACCC 58.677 52.381 0.00 0.00 0.00 4.11
520 521 2.224209 CCTCCCGTATCACATAACCCAC 60.224 54.545 0.00 0.00 0.00 4.61
522 523 2.432874 TCCCGTATCACATAACCCACAG 59.567 50.000 0.00 0.00 0.00 3.66
525 526 3.071023 CCGTATCACATAACCCACAGGAT 59.929 47.826 0.00 0.00 36.73 3.24
526 527 4.058124 CGTATCACATAACCCACAGGATG 58.942 47.826 0.00 0.00 46.00 3.51
550 551 2.124487 CTCGCCTCTCTCCTCCGT 60.124 66.667 0.00 0.00 0.00 4.69
557 558 0.181587 CTCTCTCCTCCGTAGCCTGA 59.818 60.000 0.00 0.00 0.00 3.86
569 570 5.741011 TCCGTAGCCTGAACATTTTCTTAT 58.259 37.500 0.00 0.00 32.36 1.73
570 571 6.177610 TCCGTAGCCTGAACATTTTCTTATT 58.822 36.000 0.00 0.00 32.36 1.40
571 572 6.315393 TCCGTAGCCTGAACATTTTCTTATTC 59.685 38.462 0.00 0.00 32.36 1.75
574 575 6.428385 AGCCTGAACATTTTCTTATTCTCG 57.572 37.500 0.00 0.00 32.36 4.04
576 577 5.163713 GCCTGAACATTTTCTTATTCTCGCT 60.164 40.000 0.00 0.00 32.36 4.93
613 614 3.803231 CCTCGATTGCTTCAATGAGAGAG 59.197 47.826 16.38 10.70 37.38 3.20
614 615 4.441217 CCTCGATTGCTTCAATGAGAGAGA 60.441 45.833 16.38 0.00 37.38 3.10
615 616 5.077134 TCGATTGCTTCAATGAGAGAGAA 57.923 39.130 0.00 0.00 33.90 2.87
629 630 2.609610 AGAACCCCTAAGCCGGCA 60.610 61.111 31.54 7.98 0.00 5.69
664 665 0.250640 CCAAGTTGCACTCCTGCTCT 60.251 55.000 0.00 0.00 44.57 4.09
670 671 1.217779 GCACTCCTGCTCTGACTCC 59.782 63.158 0.00 0.00 40.63 3.85
671 672 1.510383 CACTCCTGCTCTGACTCCG 59.490 63.158 0.00 0.00 0.00 4.63
672 673 1.680651 ACTCCTGCTCTGACTCCGG 60.681 63.158 0.00 0.00 0.00 5.14
673 674 1.680651 CTCCTGCTCTGACTCCGGT 60.681 63.158 0.00 0.00 0.00 5.28
681 682 4.631740 TGACTCCGGTGAGCCCCA 62.632 66.667 11.17 0.00 42.74 4.96
683 684 3.607370 GACTCCGGTGAGCCCCAAC 62.607 68.421 11.17 0.00 42.74 3.77
688 689 2.355115 GGTGAGCCCCAACCGATT 59.645 61.111 0.00 0.00 0.00 3.34
689 690 2.046285 GGTGAGCCCCAACCGATTG 61.046 63.158 0.00 0.00 35.40 2.67
690 691 1.303317 GTGAGCCCCAACCGATTGT 60.303 57.895 0.00 0.00 33.60 2.71
704 3311 1.336148 CGATTGTGCAAGCATGGTTGT 60.336 47.619 31.79 16.58 0.00 3.32
754 3361 4.242811 ACTATCTCATTTATGGGCCCTCA 58.757 43.478 25.70 7.71 0.00 3.86
755 3362 4.665009 ACTATCTCATTTATGGGCCCTCAA 59.335 41.667 25.70 14.16 0.00 3.02
833 3445 3.119637 CCAGCCAACTTTATAAACCCGTG 60.120 47.826 0.00 0.00 0.00 4.94
876 3492 1.021920 CGCACTCTCTCACTCTCCGA 61.022 60.000 0.00 0.00 0.00 4.55
878 3494 1.091537 CACTCTCTCACTCTCCGACC 58.908 60.000 0.00 0.00 0.00 4.79
1055 3683 0.119155 TCCAAGTCAGGTGATCCCCT 59.881 55.000 0.00 0.00 34.21 4.79
1134 4088 1.362717 CGCGACCTTCACCGGATAT 59.637 57.895 9.46 0.00 0.00 1.63
1170 4124 2.202492 CTCTTCGGCGTCTGTCGG 60.202 66.667 6.85 0.00 45.11 4.79
1231 4187 1.008995 CGCCGAGGGTTTTGTTGTG 60.009 57.895 0.00 0.00 0.00 3.33
1277 4234 3.562176 GGGTGGGCATCTAAAGGATATGG 60.562 52.174 0.00 0.00 32.64 2.74
1329 4286 2.892425 GATCGGTGCGAGGGCTTG 60.892 66.667 0.00 0.00 39.91 4.01
1352 4312 5.151389 GTGATTCGGTTGTTTATGTGGTTC 58.849 41.667 0.00 0.00 0.00 3.62
1381 4341 5.410067 GGATTTTGTTATGGGTGTGTGATG 58.590 41.667 0.00 0.00 0.00 3.07
1392 4352 0.459411 TGTGTGATGTATCCACGGCG 60.459 55.000 4.80 4.80 37.34 6.46
1466 4498 6.238648 GGTTCCAGTCCTTCAGAATTTTCTA 58.761 40.000 0.00 0.00 35.34 2.10
1467 4499 6.715264 GGTTCCAGTCCTTCAGAATTTTCTAA 59.285 38.462 0.00 0.00 35.34 2.10
1516 4549 8.912988 TGGAATTGGATTGGATTATCTGTTTAC 58.087 33.333 0.00 0.00 0.00 2.01
1518 4551 6.371809 TTGGATTGGATTATCTGTTTACGC 57.628 37.500 0.00 0.00 0.00 4.42
1625 5620 5.126545 GTGGGTGGGTTCTTATAATTTGGTC 59.873 44.000 0.00 0.00 0.00 4.02
1639 5634 5.791336 AATTTGGTCTCTCAAGGAAAACC 57.209 39.130 0.00 0.00 0.00 3.27
1696 5691 4.201685 GCTTGCTCAAAATGACAATGCATC 60.202 41.667 0.00 0.00 0.00 3.91
1781 5779 9.226606 CTGTGAATAAGGTAACACTAAATGGAA 57.773 33.333 0.00 0.00 41.41 3.53
1805 5803 4.991153 TTTGTGTTTATGGACAAGTGCA 57.009 36.364 0.00 0.00 33.73 4.57
1844 5842 6.764560 GCGATTCCTATGGGTTTTAGTCTAAA 59.235 38.462 0.65 0.65 0.00 1.85
1890 6090 6.644347 AGAGAGTATATTTGGTTGGTGACTG 58.356 40.000 0.00 0.00 0.00 3.51
1928 6149 0.606401 TGCCACACTTGCCTTAGCTC 60.606 55.000 0.00 0.00 40.80 4.09
1929 6150 0.322008 GCCACACTTGCCTTAGCTCT 60.322 55.000 0.00 0.00 40.80 4.09
1956 6177 5.182001 TGCTCAAATTCTTAGCCTCACTTTC 59.818 40.000 4.69 0.00 35.33 2.62
1957 6178 5.182001 GCTCAAATTCTTAGCCTCACTTTCA 59.818 40.000 0.00 0.00 0.00 2.69
1976 6302 3.998560 ATTGCCCGAGGGAATTTCA 57.001 47.368 13.28 0.00 40.83 2.69
2021 6364 8.419076 ACATGTGGACTTATTTTGAACAAAAC 57.581 30.769 13.64 2.88 42.32 2.43
2073 6416 2.884639 CACCCACCTAACTTGGTCAAAG 59.115 50.000 0.00 0.00 38.45 2.77
2292 6659 1.321474 TTCTACCCGTGTCAGAACGT 58.679 50.000 0.00 0.00 42.01 3.99
2454 6821 1.527034 GCTGATGAGTCTTTGTGCCA 58.473 50.000 0.00 0.00 0.00 4.92
2517 6884 1.992667 TCGCAGCATCTTAGAAACACG 59.007 47.619 0.00 0.00 0.00 4.49
2732 7104 5.308237 AGATCTTGTGGGTTTCAAGTCTAGT 59.692 40.000 0.00 0.00 41.78 2.57
2805 7296 2.730094 GGGGCACAACAGCAACAG 59.270 61.111 0.00 0.00 35.83 3.16
3155 7802 2.273449 CGCCCAGCCATCTCCTTT 59.727 61.111 0.00 0.00 0.00 3.11
3211 7975 3.400054 GGGTGGCGGCTACCTTCT 61.400 66.667 30.68 0.00 38.30 2.85
4003 12775 7.546316 TGATCAGCATCCATTGTGTTTTATTTG 59.454 33.333 0.00 0.00 0.00 2.32
4293 13089 8.763356 GTTTTATTTGCAGATGATTTGTTGACA 58.237 29.630 0.00 0.00 0.00 3.58
4414 13211 5.417811 CCAATTTATGGCTGTGCATAACAA 58.582 37.500 0.00 0.00 43.80 2.83
5143 13990 5.223449 TCAAACGTCCCTTCTGTCTAAAT 57.777 39.130 0.00 0.00 0.00 1.40
5465 14363 4.293662 AGAAGGAAATCACTTCACCTCC 57.706 45.455 7.78 0.00 45.18 4.30
5540 14442 3.880047 ATTGGAGATTGCATGTGGTTG 57.120 42.857 0.00 0.00 0.00 3.77
5663 14565 4.021368 TCGTAACCCTTCTTTTCCTCTCAG 60.021 45.833 0.00 0.00 0.00 3.35
5733 14636 9.705290 TTATACGTGTAACAGATATGCATGATT 57.295 29.630 10.16 0.00 35.74 2.57
5918 14822 2.112380 TCAATGAAGGCAAGATCGCA 57.888 45.000 0.00 0.00 0.00 5.10
5965 14869 1.986882 AAAGCCTCCAAGTGAACCTG 58.013 50.000 0.00 0.00 0.00 4.00
6115 15020 2.432628 CCGCAACGGGTGTCTCTC 60.433 66.667 0.00 0.00 44.15 3.20
6244 15158 7.931578 TGAACTTTGACTTTTGGAAACTAGA 57.068 32.000 0.00 0.00 0.00 2.43
6245 15159 7.758495 TGAACTTTGACTTTTGGAAACTAGAC 58.242 34.615 0.00 0.00 0.00 2.59
6283 15208 3.997021 GTGGTTGAAGTGATGTACTCTGG 59.003 47.826 0.00 0.00 39.18 3.86
6292 15217 4.080129 AGTGATGTACTCTGGATTGCCAAT 60.080 41.667 0.00 0.00 36.59 3.16
6304 15229 3.573967 GGATTGCCAATTGATACCCGATT 59.426 43.478 7.12 0.00 0.00 3.34
6408 15335 2.094182 GTCGTATTCTTCTGGGTGCAGA 60.094 50.000 0.00 0.00 0.00 4.26
6421 15348 6.721318 TCTGGGTGCAGATTTTTACTTCTAT 58.279 36.000 0.00 0.00 0.00 1.98
6422 15349 7.857456 TCTGGGTGCAGATTTTTACTTCTATA 58.143 34.615 0.00 0.00 0.00 1.31
6423 15350 7.987458 TCTGGGTGCAGATTTTTACTTCTATAG 59.013 37.037 0.00 0.00 0.00 1.31
6425 15352 8.764558 TGGGTGCAGATTTTTACTTCTATAGTA 58.235 33.333 0.00 0.00 38.33 1.82
6426 15353 9.609346 GGGTGCAGATTTTTACTTCTATAGTAA 57.391 33.333 0.00 0.00 45.36 2.24
6515 15499 4.083565 GGTAGGGCAGGTTGAATTTGTAA 58.916 43.478 0.00 0.00 0.00 2.41
6594 15579 3.229276 TGTGTGGTTTCAGCAGTTTTG 57.771 42.857 0.00 0.00 0.00 2.44
6605 15593 1.667722 CAGTTTTGGGGCTGCTTCC 59.332 57.895 0.00 2.53 0.00 3.46
6612 15600 0.178938 TGGGGCTGCTTCCATTCAAA 60.179 50.000 10.30 0.00 0.00 2.69
6613 15601 0.975887 GGGGCTGCTTCCATTCAAAA 59.024 50.000 0.00 0.00 0.00 2.44
6614 15602 1.066645 GGGGCTGCTTCCATTCAAAAG 60.067 52.381 0.00 0.00 0.00 2.27
6615 15603 1.895131 GGGCTGCTTCCATTCAAAAGA 59.105 47.619 0.00 0.00 0.00 2.52
6616 15604 2.299867 GGGCTGCTTCCATTCAAAAGAA 59.700 45.455 0.00 0.00 0.00 2.52
6617 15605 3.055602 GGGCTGCTTCCATTCAAAAGAAT 60.056 43.478 0.00 0.00 0.00 2.40
6618 15606 4.179298 GGCTGCTTCCATTCAAAAGAATC 58.821 43.478 0.00 0.00 0.00 2.52
6619 15607 4.081807 GGCTGCTTCCATTCAAAAGAATCT 60.082 41.667 0.00 0.00 0.00 2.40
6620 15608 5.126061 GGCTGCTTCCATTCAAAAGAATCTA 59.874 40.000 0.00 0.00 0.00 1.98
6621 15609 6.350445 GGCTGCTTCCATTCAAAAGAATCTAA 60.350 38.462 0.00 0.00 0.00 2.10
6622 15610 6.529477 GCTGCTTCCATTCAAAAGAATCTAAC 59.471 38.462 0.00 0.00 0.00 2.34
6627 15626 8.704849 TTCCATTCAAAAGAATCTAACAGGAA 57.295 30.769 0.00 0.00 0.00 3.36
6708 17417 4.309099 TGCAAATTCGTTTACGGTAGACT 58.691 39.130 7.18 0.00 40.29 3.24
6739 17459 2.592993 GGTACTGTGAGGCCCTGCA 61.593 63.158 0.00 0.00 0.00 4.41
6779 17499 0.107752 TGCGATAGATGCAGCCACAA 60.108 50.000 0.00 0.00 37.44 3.33
6802 17522 0.677731 GCCCAAGCAGTGCTACATGA 60.678 55.000 20.09 0.00 38.25 3.07
6847 17567 2.455674 TGTCAGAAACTGGTCATCCG 57.544 50.000 0.00 0.00 36.30 4.18
6848 17568 1.967779 TGTCAGAAACTGGTCATCCGA 59.032 47.619 0.00 0.00 36.30 4.55
6849 17569 2.029020 TGTCAGAAACTGGTCATCCGAG 60.029 50.000 0.00 0.00 36.30 4.63
6850 17570 1.550524 TCAGAAACTGGTCATCCGAGG 59.449 52.381 0.00 0.00 36.30 4.63
6851 17571 1.276421 CAGAAACTGGTCATCCGAGGT 59.724 52.381 0.00 0.00 36.30 3.85
6852 17572 1.978580 AGAAACTGGTCATCCGAGGTT 59.021 47.619 0.00 0.00 36.30 3.50
6853 17573 3.056107 CAGAAACTGGTCATCCGAGGTTA 60.056 47.826 0.00 0.00 36.30 2.85
6854 17574 3.775316 AGAAACTGGTCATCCGAGGTTAT 59.225 43.478 0.00 0.00 36.30 1.89
6855 17575 4.225267 AGAAACTGGTCATCCGAGGTTATT 59.775 41.667 0.00 0.00 36.30 1.40
6856 17576 3.821421 ACTGGTCATCCGAGGTTATTC 57.179 47.619 0.00 0.00 36.30 1.75
6857 17577 2.434702 ACTGGTCATCCGAGGTTATTCC 59.565 50.000 0.00 0.00 36.30 3.01
6871 17591 6.867662 AGGTTATTCCTTTTGCGATAGATG 57.132 37.500 0.00 0.00 45.67 2.90
6872 17592 5.239525 AGGTTATTCCTTTTGCGATAGATGC 59.760 40.000 0.00 0.00 45.67 3.91
6873 17593 5.008613 GGTTATTCCTTTTGCGATAGATGCA 59.991 40.000 0.00 0.00 41.38 3.96
6874 17594 4.825546 ATTCCTTTTGCGATAGATGCAG 57.174 40.909 0.00 0.00 44.28 4.41
6875 17595 3.541996 TCCTTTTGCGATAGATGCAGA 57.458 42.857 0.00 0.00 44.28 4.26
6876 17596 3.198068 TCCTTTTGCGATAGATGCAGAC 58.802 45.455 0.00 0.00 44.28 3.51
6877 17597 2.938451 CCTTTTGCGATAGATGCAGACA 59.062 45.455 0.00 0.00 44.28 3.41
6878 17598 3.002042 CCTTTTGCGATAGATGCAGACAG 59.998 47.826 0.00 0.00 44.28 3.51
6879 17599 2.967599 TTGCGATAGATGCAGACAGT 57.032 45.000 0.00 0.00 44.28 3.55
6880 17600 4.385358 TTTGCGATAGATGCAGACAGTA 57.615 40.909 0.00 0.00 44.28 2.74
6881 17601 4.590850 TTGCGATAGATGCAGACAGTAT 57.409 40.909 0.00 0.00 44.28 2.12
6882 17602 3.905784 TGCGATAGATGCAGACAGTATG 58.094 45.455 0.00 0.00 39.01 2.39
6883 17603 3.569701 TGCGATAGATGCAGACAGTATGA 59.430 43.478 0.00 0.00 37.12 2.15
6884 17604 3.917380 GCGATAGATGCAGACAGTATGAC 59.083 47.826 0.00 0.00 37.91 3.06
6885 17605 4.320861 GCGATAGATGCAGACAGTATGACT 60.321 45.833 0.00 0.00 39.64 3.41
6896 17616 3.325293 CAGTATGACTGTGCAGGAGTT 57.675 47.619 4.11 0.00 41.19 3.01
6897 17617 2.998670 CAGTATGACTGTGCAGGAGTTG 59.001 50.000 4.11 0.00 41.19 3.16
6898 17618 2.634940 AGTATGACTGTGCAGGAGTTGT 59.365 45.455 4.11 0.00 0.00 3.32
6899 17619 2.645838 ATGACTGTGCAGGAGTTGTT 57.354 45.000 4.11 0.00 0.00 2.83
6900 17620 2.418368 TGACTGTGCAGGAGTTGTTT 57.582 45.000 4.11 0.00 0.00 2.83
6901 17621 2.016318 TGACTGTGCAGGAGTTGTTTG 58.984 47.619 4.11 0.00 0.00 2.93
6902 17622 2.017049 GACTGTGCAGGAGTTGTTTGT 58.983 47.619 4.11 0.00 0.00 2.83
6903 17623 2.423538 GACTGTGCAGGAGTTGTTTGTT 59.576 45.455 4.11 0.00 0.00 2.83
6904 17624 2.825532 ACTGTGCAGGAGTTGTTTGTTT 59.174 40.909 4.11 0.00 0.00 2.83
6905 17625 4.013728 ACTGTGCAGGAGTTGTTTGTTTA 58.986 39.130 4.11 0.00 0.00 2.01
6906 17626 4.142469 ACTGTGCAGGAGTTGTTTGTTTAC 60.142 41.667 4.11 0.00 0.00 2.01
6907 17627 3.759086 TGTGCAGGAGTTGTTTGTTTACA 59.241 39.130 0.00 0.00 0.00 2.41
6908 17628 4.400884 TGTGCAGGAGTTGTTTGTTTACAT 59.599 37.500 0.00 0.00 0.00 2.29
6909 17629 5.590663 TGTGCAGGAGTTGTTTGTTTACATA 59.409 36.000 0.00 0.00 0.00 2.29
6910 17630 6.264292 TGTGCAGGAGTTGTTTGTTTACATAT 59.736 34.615 0.00 0.00 0.00 1.78
6911 17631 7.145323 GTGCAGGAGTTGTTTGTTTACATATT 58.855 34.615 0.00 0.00 0.00 1.28
6912 17632 7.114811 GTGCAGGAGTTGTTTGTTTACATATTG 59.885 37.037 0.00 0.00 0.00 1.90
6913 17633 7.145323 GCAGGAGTTGTTTGTTTACATATTGT 58.855 34.615 0.00 0.00 0.00 2.71
6914 17634 7.326063 GCAGGAGTTGTTTGTTTACATATTGTC 59.674 37.037 0.00 0.00 0.00 3.18
6915 17635 7.807907 CAGGAGTTGTTTGTTTACATATTGTCC 59.192 37.037 0.00 0.00 0.00 4.02
6916 17636 7.504238 AGGAGTTGTTTGTTTACATATTGTCCA 59.496 33.333 0.00 0.00 0.00 4.02
6917 17637 8.138712 GGAGTTGTTTGTTTACATATTGTCCAA 58.861 33.333 0.00 0.00 0.00 3.53
6918 17638 9.522804 GAGTTGTTTGTTTACATATTGTCCAAA 57.477 29.630 0.00 0.00 0.00 3.28
6919 17639 9.528018 AGTTGTTTGTTTACATATTGTCCAAAG 57.472 29.630 0.00 0.00 29.48 2.77
6920 17640 8.760569 GTTGTTTGTTTACATATTGTCCAAAGG 58.239 33.333 0.00 0.00 29.48 3.11
6921 17641 8.239038 TGTTTGTTTACATATTGTCCAAAGGA 57.761 30.769 0.00 0.00 29.48 3.36
6922 17642 8.696374 TGTTTGTTTACATATTGTCCAAAGGAA 58.304 29.630 0.00 0.00 31.38 3.36
6923 17643 9.191995 GTTTGTTTACATATTGTCCAAAGGAAG 57.808 33.333 0.00 0.00 31.38 3.46
6924 17644 6.919721 TGTTTACATATTGTCCAAAGGAAGC 58.080 36.000 0.00 0.00 31.38 3.86
6925 17645 6.491745 TGTTTACATATTGTCCAAAGGAAGCA 59.508 34.615 0.00 0.00 31.38 3.91
6926 17646 7.014711 TGTTTACATATTGTCCAAAGGAAGCAA 59.985 33.333 0.00 0.00 31.38 3.91
6927 17647 7.531857 TTACATATTGTCCAAAGGAAGCAAA 57.468 32.000 0.00 0.00 31.38 3.68
6928 17648 6.610075 ACATATTGTCCAAAGGAAGCAAAT 57.390 33.333 0.00 0.00 31.38 2.32
6929 17649 6.633856 ACATATTGTCCAAAGGAAGCAAATC 58.366 36.000 0.00 0.00 31.38 2.17
6930 17650 3.641437 TTGTCCAAAGGAAGCAAATCG 57.359 42.857 0.00 0.00 31.38 3.34
6931 17651 1.885887 TGTCCAAAGGAAGCAAATCGG 59.114 47.619 0.00 0.00 31.38 4.18
6932 17652 1.202348 GTCCAAAGGAAGCAAATCGGG 59.798 52.381 0.00 0.00 31.38 5.14
6933 17653 1.203001 TCCAAAGGAAGCAAATCGGGT 60.203 47.619 0.00 0.00 0.00 5.28
6934 17654 1.067635 CCAAAGGAAGCAAATCGGGTG 60.068 52.381 0.00 0.00 0.00 4.61
6935 17655 1.067635 CAAAGGAAGCAAATCGGGTGG 60.068 52.381 0.00 0.00 0.00 4.61
6936 17656 1.250840 AAGGAAGCAAATCGGGTGGC 61.251 55.000 0.00 0.00 0.00 5.01
6937 17657 2.485122 GAAGCAAATCGGGTGGCG 59.515 61.111 0.00 0.00 0.00 5.69
6938 17658 3.683587 GAAGCAAATCGGGTGGCGC 62.684 63.158 0.00 0.00 0.00 6.53
6940 17660 3.825611 GCAAATCGGGTGGCGCAT 61.826 61.111 10.83 0.00 0.00 4.73
6941 17661 2.477176 GCAAATCGGGTGGCGCATA 61.477 57.895 10.83 0.00 0.00 3.14
6942 17662 1.355210 CAAATCGGGTGGCGCATAC 59.645 57.895 10.83 7.72 0.00 2.39
6943 17663 1.078072 AAATCGGGTGGCGCATACA 60.078 52.632 10.83 0.00 0.00 2.29
6944 17664 0.465460 AAATCGGGTGGCGCATACAT 60.465 50.000 10.83 0.00 0.00 2.29
6945 17665 0.465460 AATCGGGTGGCGCATACATT 60.465 50.000 10.83 1.16 0.00 2.71
6946 17666 0.465460 ATCGGGTGGCGCATACATTT 60.465 50.000 10.83 0.00 0.00 2.32
6947 17667 1.063972 CGGGTGGCGCATACATTTG 59.936 57.895 10.83 0.00 0.00 2.32
6948 17668 1.226945 GGGTGGCGCATACATTTGC 60.227 57.895 10.83 0.00 39.29 3.68
6951 17671 3.205395 GGCGCATACATTTGCCCA 58.795 55.556 10.83 0.00 41.70 5.36
6952 17672 1.741525 GGCGCATACATTTGCCCAT 59.258 52.632 10.83 0.00 41.70 4.00
6953 17673 0.598158 GGCGCATACATTTGCCCATG 60.598 55.000 10.83 0.00 41.70 3.66
6954 17674 0.385029 GCGCATACATTTGCCCATGA 59.615 50.000 0.30 0.00 39.52 3.07
6955 17675 1.202394 GCGCATACATTTGCCCATGAA 60.202 47.619 0.30 0.00 39.52 2.57
6956 17676 2.546373 GCGCATACATTTGCCCATGAAT 60.546 45.455 0.30 0.00 39.52 2.57
6957 17677 3.054166 CGCATACATTTGCCCATGAATG 58.946 45.455 0.00 0.00 39.52 2.67
6958 17678 3.491276 CGCATACATTTGCCCATGAATGT 60.491 43.478 13.24 13.24 45.54 2.71
6959 17679 4.261530 CGCATACATTTGCCCATGAATGTA 60.262 41.667 15.92 15.92 46.65 2.29
6960 17680 5.599732 GCATACATTTGCCCATGAATGTAA 58.400 37.500 16.97 6.01 46.09 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.324330 TGTTGGCTCATTGCGTCGG 61.324 57.895 0.00 0.00 44.05 4.79
31 32 6.142498 TGCCCCAGTTTAATTCATGGATAAT 58.858 36.000 0.00 0.00 34.60 1.28
52 53 2.288666 TGAAGTCCTGCGATTAATGCC 58.711 47.619 0.00 0.00 0.00 4.40
82 83 3.193263 CACTTCGGATCCTCATGTTCTG 58.807 50.000 10.75 0.00 0.00 3.02
83 84 2.834549 ACACTTCGGATCCTCATGTTCT 59.165 45.455 10.75 0.00 0.00 3.01
84 85 3.190874 GACACTTCGGATCCTCATGTTC 58.809 50.000 10.75 0.00 0.00 3.18
112 113 4.098416 GGTTCATTGCGCAGTCTTTAATC 58.902 43.478 11.31 0.00 0.00 1.75
124 125 2.118683 CAACAGTGTTGGTTCATTGCG 58.881 47.619 25.45 0.00 0.00 4.85
180 181 1.514678 ATGTCCGTGCGTTGCAATGT 61.515 50.000 19.49 0.00 41.47 2.71
181 182 1.066656 CATGTCCGTGCGTTGCAATG 61.067 55.000 14.54 14.54 41.47 2.82
223 224 6.001460 TGGGTCGTGTTCTGATTAGAATTTT 58.999 36.000 2.93 0.00 44.27 1.82
247 248 6.950041 CCTGATATTTTCCCCATGTGATACAT 59.050 38.462 0.00 0.00 39.91 2.29
248 249 6.126215 ACCTGATATTTTCCCCATGTGATACA 60.126 38.462 0.00 0.00 0.00 2.29
249 250 6.207417 CACCTGATATTTTCCCCATGTGATAC 59.793 42.308 0.00 0.00 30.30 2.24
250 251 6.306199 CACCTGATATTTTCCCCATGTGATA 58.694 40.000 0.00 0.00 30.30 2.15
251 252 5.142639 CACCTGATATTTTCCCCATGTGAT 58.857 41.667 0.00 0.00 30.30 3.06
252 253 4.535781 CACCTGATATTTTCCCCATGTGA 58.464 43.478 0.00 0.00 30.30 3.58
253 254 3.068590 GCACCTGATATTTTCCCCATGTG 59.931 47.826 0.00 0.00 0.00 3.21
254 255 3.052642 AGCACCTGATATTTTCCCCATGT 60.053 43.478 0.00 0.00 0.00 3.21
255 256 3.569491 AGCACCTGATATTTTCCCCATG 58.431 45.455 0.00 0.00 0.00 3.66
256 257 3.979501 AGCACCTGATATTTTCCCCAT 57.020 42.857 0.00 0.00 0.00 4.00
257 258 3.433031 CGTAGCACCTGATATTTTCCCCA 60.433 47.826 0.00 0.00 0.00 4.96
258 259 3.139077 CGTAGCACCTGATATTTTCCCC 58.861 50.000 0.00 0.00 0.00 4.81
259 260 3.139077 CCGTAGCACCTGATATTTTCCC 58.861 50.000 0.00 0.00 0.00 3.97
260 261 3.139077 CCCGTAGCACCTGATATTTTCC 58.861 50.000 0.00 0.00 0.00 3.13
261 262 4.058817 CTCCCGTAGCACCTGATATTTTC 58.941 47.826 0.00 0.00 0.00 2.29
262 263 4.073293 CTCCCGTAGCACCTGATATTTT 57.927 45.455 0.00 0.00 0.00 1.82
263 264 3.753294 CTCCCGTAGCACCTGATATTT 57.247 47.619 0.00 0.00 0.00 1.40
275 276 0.608640 AAACTCAGGTGCTCCCGTAG 59.391 55.000 0.00 0.00 38.74 3.51
276 277 1.822990 CTAAACTCAGGTGCTCCCGTA 59.177 52.381 0.00 0.00 38.74 4.02
277 278 0.608640 CTAAACTCAGGTGCTCCCGT 59.391 55.000 0.00 0.00 38.74 5.28
278 279 0.108138 CCTAAACTCAGGTGCTCCCG 60.108 60.000 0.00 0.00 38.74 5.14
279 280 3.863407 CCTAAACTCAGGTGCTCCC 57.137 57.895 0.00 0.00 0.00 4.30
286 287 2.303022 TCTTGGAGCACCTAAACTCAGG 59.697 50.000 0.71 0.00 41.87 3.86
287 288 3.594134 CTCTTGGAGCACCTAAACTCAG 58.406 50.000 0.71 0.00 34.48 3.35
288 289 3.685139 CTCTTGGAGCACCTAAACTCA 57.315 47.619 0.71 0.00 34.48 3.41
303 304 0.731417 CAATGGCCGAGAAGCTCTTG 59.269 55.000 0.00 0.00 0.00 3.02
304 305 0.393537 CCAATGGCCGAGAAGCTCTT 60.394 55.000 0.00 0.00 0.00 2.85
305 306 1.222936 CCAATGGCCGAGAAGCTCT 59.777 57.895 0.00 0.00 0.00 4.09
306 307 0.179034 ATCCAATGGCCGAGAAGCTC 60.179 55.000 0.00 0.00 0.00 4.09
307 308 0.179034 GATCCAATGGCCGAGAAGCT 60.179 55.000 0.00 0.00 0.00 3.74
308 309 0.179034 AGATCCAATGGCCGAGAAGC 60.179 55.000 0.00 0.00 0.00 3.86
309 310 1.139654 TCAGATCCAATGGCCGAGAAG 59.860 52.381 0.00 0.00 0.00 2.85
310 311 1.203237 TCAGATCCAATGGCCGAGAA 58.797 50.000 0.00 0.00 0.00 2.87
311 312 1.203237 TTCAGATCCAATGGCCGAGA 58.797 50.000 0.00 0.00 0.00 4.04
312 313 2.042686 TTTCAGATCCAATGGCCGAG 57.957 50.000 0.00 0.00 0.00 4.63
313 314 2.575532 GATTTCAGATCCAATGGCCGA 58.424 47.619 0.00 0.00 0.00 5.54
314 315 1.610522 GGATTTCAGATCCAATGGCCG 59.389 52.381 0.00 0.00 38.09 6.13
315 316 2.669781 TGGATTTCAGATCCAATGGCC 58.330 47.619 5.31 0.00 44.54 5.36
321 322 2.304470 TGACCGTTGGATTTCAGATCCA 59.696 45.455 3.70 3.70 45.71 3.41
322 323 2.985896 TGACCGTTGGATTTCAGATCC 58.014 47.619 0.00 0.00 38.66 3.36
323 324 4.446371 AGATGACCGTTGGATTTCAGATC 58.554 43.478 0.00 0.00 0.00 2.75
324 325 4.494091 AGATGACCGTTGGATTTCAGAT 57.506 40.909 0.00 0.00 0.00 2.90
325 326 3.981071 AGATGACCGTTGGATTTCAGA 57.019 42.857 0.00 0.00 0.00 3.27
326 327 4.503910 TGTAGATGACCGTTGGATTTCAG 58.496 43.478 0.00 0.00 0.00 3.02
327 328 4.221924 TCTGTAGATGACCGTTGGATTTCA 59.778 41.667 0.00 0.00 0.00 2.69
328 329 4.755411 TCTGTAGATGACCGTTGGATTTC 58.245 43.478 0.00 0.00 0.00 2.17
329 330 4.819105 TCTGTAGATGACCGTTGGATTT 57.181 40.909 0.00 0.00 0.00 2.17
342 343 0.390860 GGTCCAGCGCATCTGTAGAT 59.609 55.000 11.47 0.00 41.25 1.98
343 344 1.676678 GGGTCCAGCGCATCTGTAGA 61.677 60.000 11.47 0.00 41.25 2.59
344 345 1.227380 GGGTCCAGCGCATCTGTAG 60.227 63.158 11.47 0.00 41.25 2.74
345 346 2.900273 GGGTCCAGCGCATCTGTA 59.100 61.111 11.47 0.00 41.25 2.74
346 347 4.457496 CGGGTCCAGCGCATCTGT 62.457 66.667 11.47 0.00 41.25 3.41
347 348 2.930385 AATCGGGTCCAGCGCATCTG 62.930 60.000 11.47 0.00 42.49 2.90
348 349 2.257409 AAATCGGGTCCAGCGCATCT 62.257 55.000 11.47 0.00 0.00 2.90
349 350 1.819632 AAATCGGGTCCAGCGCATC 60.820 57.895 11.47 0.00 0.00 3.91
350 351 2.114670 CAAATCGGGTCCAGCGCAT 61.115 57.895 11.47 0.00 0.00 4.73
351 352 2.745884 CAAATCGGGTCCAGCGCA 60.746 61.111 11.47 0.00 0.00 6.09
352 353 4.179579 GCAAATCGGGTCCAGCGC 62.180 66.667 0.00 0.00 0.00 5.92
353 354 1.656818 ATTGCAAATCGGGTCCAGCG 61.657 55.000 1.71 0.00 0.00 5.18
354 355 1.065551 GTATTGCAAATCGGGTCCAGC 59.934 52.381 1.71 0.00 0.00 4.85
355 356 1.676006 GGTATTGCAAATCGGGTCCAG 59.324 52.381 1.71 0.00 0.00 3.86
356 357 1.004862 TGGTATTGCAAATCGGGTCCA 59.995 47.619 1.71 2.09 0.00 4.02
357 358 1.757682 TGGTATTGCAAATCGGGTCC 58.242 50.000 1.71 0.00 0.00 4.46
358 359 3.859411 TTTGGTATTGCAAATCGGGTC 57.141 42.857 1.71 0.00 0.00 4.46
359 360 4.817318 AATTTGGTATTGCAAATCGGGT 57.183 36.364 1.71 0.00 31.42 5.28
360 361 6.313252 CAAAAATTTGGTATTGCAAATCGGG 58.687 36.000 1.71 0.00 34.59 5.14
375 376 5.189180 TCAAAGAACACCCCCAAAAATTTG 58.811 37.500 0.00 0.00 37.90 2.32
376 377 5.443230 TCAAAGAACACCCCCAAAAATTT 57.557 34.783 0.00 0.00 0.00 1.82
377 378 5.443230 TTCAAAGAACACCCCCAAAAATT 57.557 34.783 0.00 0.00 0.00 1.82
378 379 5.645056 ATTCAAAGAACACCCCCAAAAAT 57.355 34.783 0.00 0.00 0.00 1.82
379 380 6.561519 TTATTCAAAGAACACCCCCAAAAA 57.438 33.333 0.00 0.00 0.00 1.94
380 381 6.561519 TTTATTCAAAGAACACCCCCAAAA 57.438 33.333 0.00 0.00 0.00 2.44
381 382 6.561519 TTTTATTCAAAGAACACCCCCAAA 57.438 33.333 0.00 0.00 0.00 3.28
382 383 5.454045 GCTTTTATTCAAAGAACACCCCCAA 60.454 40.000 0.00 0.00 44.40 4.12
383 384 4.039852 GCTTTTATTCAAAGAACACCCCCA 59.960 41.667 0.00 0.00 44.40 4.96
384 385 4.566004 GCTTTTATTCAAAGAACACCCCC 58.434 43.478 0.00 0.00 44.40 5.40
385 386 4.234574 CGCTTTTATTCAAAGAACACCCC 58.765 43.478 0.00 0.00 44.40 4.95
386 387 3.673338 GCGCTTTTATTCAAAGAACACCC 59.327 43.478 0.00 0.00 44.40 4.61
387 388 3.360758 CGCGCTTTTATTCAAAGAACACC 59.639 43.478 5.56 0.00 44.40 4.16
388 389 4.215965 TCGCGCTTTTATTCAAAGAACAC 58.784 39.130 5.56 0.00 44.40 3.32
389 390 4.463209 CTCGCGCTTTTATTCAAAGAACA 58.537 39.130 5.56 0.00 44.40 3.18
390 391 3.298239 GCTCGCGCTTTTATTCAAAGAAC 59.702 43.478 5.56 0.00 44.40 3.01
391 392 3.188460 AGCTCGCGCTTTTATTCAAAGAA 59.812 39.130 5.56 0.00 46.47 2.52
392 393 2.742053 AGCTCGCGCTTTTATTCAAAGA 59.258 40.909 5.56 0.00 46.47 2.52
393 394 3.122937 AGCTCGCGCTTTTATTCAAAG 57.877 42.857 5.56 0.00 46.47 2.77
405 406 4.605967 CGAGGAGAGAGCTCGCGC 62.606 72.222 12.62 12.62 42.25 6.86
406 407 3.947841 CCGAGGAGAGAGCTCGCG 61.948 72.222 12.03 0.00 42.25 5.87
407 408 2.826738 ACCGAGGAGAGAGCTCGC 60.827 66.667 9.76 9.76 42.25 5.03
408 409 0.746563 AAGACCGAGGAGAGAGCTCG 60.747 60.000 8.37 0.00 42.25 5.03
409 410 1.021968 GAAGACCGAGGAGAGAGCTC 58.978 60.000 5.27 5.27 40.54 4.09
410 411 0.746563 CGAAGACCGAGGAGAGAGCT 60.747 60.000 0.00 0.00 41.76 4.09
411 412 0.745128 TCGAAGACCGAGGAGAGAGC 60.745 60.000 0.00 0.00 43.23 4.09
412 413 3.462427 TCGAAGACCGAGGAGAGAG 57.538 57.895 0.00 0.00 43.23 3.20
420 421 3.546724 AGATCTGAGATTCGAAGACCGA 58.453 45.455 3.35 0.25 46.94 4.69
421 422 3.980646 AGATCTGAGATTCGAAGACCG 57.019 47.619 3.35 0.00 34.32 4.79
422 423 5.209240 CGTTAGATCTGAGATTCGAAGACC 58.791 45.833 5.18 0.00 34.32 3.85
423 424 5.209240 CCGTTAGATCTGAGATTCGAAGAC 58.791 45.833 5.18 0.22 34.32 3.01
424 425 4.882427 ACCGTTAGATCTGAGATTCGAAGA 59.118 41.667 5.18 0.00 0.00 2.87
425 426 5.176407 ACCGTTAGATCTGAGATTCGAAG 57.824 43.478 5.18 0.00 0.00 3.79
426 427 5.124936 TCAACCGTTAGATCTGAGATTCGAA 59.875 40.000 5.18 0.00 0.00 3.71
427 428 4.638865 TCAACCGTTAGATCTGAGATTCGA 59.361 41.667 5.18 0.00 0.00 3.71
428 429 4.921547 TCAACCGTTAGATCTGAGATTCG 58.078 43.478 5.18 0.00 0.00 3.34
429 430 7.596749 TTTTCAACCGTTAGATCTGAGATTC 57.403 36.000 5.18 0.00 0.00 2.52
430 431 6.092807 GCTTTTCAACCGTTAGATCTGAGATT 59.907 38.462 5.18 0.00 0.00 2.40
431 432 5.582665 GCTTTTCAACCGTTAGATCTGAGAT 59.417 40.000 5.18 0.00 0.00 2.75
432 433 4.929808 GCTTTTCAACCGTTAGATCTGAGA 59.070 41.667 5.18 0.00 0.00 3.27
433 434 4.932200 AGCTTTTCAACCGTTAGATCTGAG 59.068 41.667 5.18 0.00 0.00 3.35
434 435 4.894784 AGCTTTTCAACCGTTAGATCTGA 58.105 39.130 5.18 0.00 0.00 3.27
435 436 4.093556 GGAGCTTTTCAACCGTTAGATCTG 59.906 45.833 5.18 0.00 0.00 2.90
436 437 4.020128 AGGAGCTTTTCAACCGTTAGATCT 60.020 41.667 0.00 0.00 0.00 2.75
437 438 4.093556 CAGGAGCTTTTCAACCGTTAGATC 59.906 45.833 0.00 0.00 0.00 2.75
438 439 4.003648 CAGGAGCTTTTCAACCGTTAGAT 58.996 43.478 0.00 0.00 0.00 1.98
439 440 3.399330 CAGGAGCTTTTCAACCGTTAGA 58.601 45.455 0.00 0.00 0.00 2.10
440 441 2.484264 CCAGGAGCTTTTCAACCGTTAG 59.516 50.000 0.00 0.00 0.00 2.34
441 442 2.105134 TCCAGGAGCTTTTCAACCGTTA 59.895 45.455 0.00 0.00 0.00 3.18
442 443 1.133915 TCCAGGAGCTTTTCAACCGTT 60.134 47.619 0.00 0.00 0.00 4.44
443 444 0.472471 TCCAGGAGCTTTTCAACCGT 59.528 50.000 0.00 0.00 0.00 4.83
444 445 1.160137 CTCCAGGAGCTTTTCAACCG 58.840 55.000 2.60 0.00 0.00 4.44
455 456 1.202330 AAGATCAGGTGCTCCAGGAG 58.798 55.000 12.81 12.81 35.89 3.69
456 457 2.392662 CTAAGATCAGGTGCTCCAGGA 58.607 52.381 7.70 4.65 35.89 3.86
457 458 1.415659 CCTAAGATCAGGTGCTCCAGG 59.584 57.143 7.70 0.00 35.89 4.45
458 459 2.906691 CCTAAGATCAGGTGCTCCAG 57.093 55.000 7.70 0.00 35.89 3.86
466 467 0.390860 CGGGAGCACCTAAGATCAGG 59.609 60.000 0.00 0.00 41.87 3.86
467 468 1.115467 ACGGGAGCACCTAAGATCAG 58.885 55.000 0.00 0.00 36.97 2.90
468 469 2.307768 CTACGGGAGCACCTAAGATCA 58.692 52.381 0.00 0.00 36.97 2.92
480 481 1.546476 GGATATCTGGTGCTACGGGAG 59.454 57.143 2.05 0.00 0.00 4.30
481 482 1.147191 AGGATATCTGGTGCTACGGGA 59.853 52.381 2.05 0.00 0.00 5.14
482 483 1.546476 GAGGATATCTGGTGCTACGGG 59.454 57.143 2.05 0.00 0.00 5.28
483 484 1.546476 GGAGGATATCTGGTGCTACGG 59.454 57.143 2.05 0.00 0.00 4.02
484 485 1.546476 GGGAGGATATCTGGTGCTACG 59.454 57.143 2.05 0.00 0.00 3.51
485 486 1.546476 CGGGAGGATATCTGGTGCTAC 59.454 57.143 2.05 0.00 0.00 3.58
486 487 1.147191 ACGGGAGGATATCTGGTGCTA 59.853 52.381 2.05 0.00 0.00 3.49
487 488 0.105453 ACGGGAGGATATCTGGTGCT 60.105 55.000 2.05 0.00 0.00 4.40
488 489 1.629043 TACGGGAGGATATCTGGTGC 58.371 55.000 2.05 0.00 0.00 5.01
489 490 3.193691 GTGATACGGGAGGATATCTGGTG 59.806 52.174 2.05 0.00 29.56 4.17
490 491 3.181422 TGTGATACGGGAGGATATCTGGT 60.181 47.826 2.05 0.00 29.56 4.00
491 492 3.431415 TGTGATACGGGAGGATATCTGG 58.569 50.000 2.05 0.00 29.56 3.86
492 493 6.405953 GGTTATGTGATACGGGAGGATATCTG 60.406 46.154 2.05 0.00 29.56 2.90
493 494 5.657302 GGTTATGTGATACGGGAGGATATCT 59.343 44.000 2.05 0.00 29.56 1.98
494 495 5.163437 GGGTTATGTGATACGGGAGGATATC 60.163 48.000 0.00 0.00 29.56 1.63
495 496 4.715297 GGGTTATGTGATACGGGAGGATAT 59.285 45.833 0.00 0.00 29.56 1.63
496 497 4.091549 GGGTTATGTGATACGGGAGGATA 58.908 47.826 0.00 0.00 29.56 2.59
497 498 2.904434 GGGTTATGTGATACGGGAGGAT 59.096 50.000 0.00 0.00 34.78 3.24
498 499 2.322658 GGGTTATGTGATACGGGAGGA 58.677 52.381 0.00 0.00 0.00 3.71
499 500 2.043992 TGGGTTATGTGATACGGGAGG 58.956 52.381 0.00 0.00 0.00 4.30
501 502 2.432874 CTGTGGGTTATGTGATACGGGA 59.567 50.000 0.00 0.00 0.00 5.14
503 504 2.432874 TCCTGTGGGTTATGTGATACGG 59.567 50.000 0.00 0.00 0.00 4.02
506 507 4.719273 TGACATCCTGTGGGTTATGTGATA 59.281 41.667 0.00 0.00 32.40 2.15
514 515 1.374947 CGGTGACATCCTGTGGGTT 59.625 57.895 0.00 0.00 0.00 4.11
518 519 1.807165 CGAGCGGTGACATCCTGTG 60.807 63.158 0.00 0.00 0.00 3.66
520 521 2.887568 GCGAGCGGTGACATCCTG 60.888 66.667 0.00 0.00 0.00 3.86
522 523 4.148825 AGGCGAGCGGTGACATCC 62.149 66.667 0.00 0.00 0.00 3.51
525 526 3.749064 GAGAGGCGAGCGGTGACA 61.749 66.667 0.00 0.00 0.00 3.58
526 527 3.404141 GAGAGAGGCGAGCGGTGAC 62.404 68.421 0.00 0.00 0.00 3.67
535 536 2.548295 GCTACGGAGGAGAGAGGCG 61.548 68.421 0.00 0.00 0.00 5.52
550 551 6.037172 GCGAGAATAAGAAAATGTTCAGGCTA 59.963 38.462 0.00 0.00 36.09 3.93
557 558 7.327214 AGAGAGAGCGAGAATAAGAAAATGTT 58.673 34.615 0.00 0.00 0.00 2.71
569 570 3.531538 GAGAGAAGAGAGAGAGCGAGAA 58.468 50.000 0.00 0.00 0.00 2.87
570 571 2.158957 GGAGAGAAGAGAGAGAGCGAGA 60.159 54.545 0.00 0.00 0.00 4.04
571 572 2.213499 GGAGAGAAGAGAGAGAGCGAG 58.787 57.143 0.00 0.00 0.00 5.03
574 575 2.576615 GAGGGAGAGAAGAGAGAGAGC 58.423 57.143 0.00 0.00 0.00 4.09
576 577 2.473070 TCGAGGGAGAGAAGAGAGAGA 58.527 52.381 0.00 0.00 0.00 3.10
613 614 2.044555 GTTGCCGGCTTAGGGGTTC 61.045 63.158 29.70 3.49 0.00 3.62
614 615 2.035155 GTTGCCGGCTTAGGGGTT 59.965 61.111 29.70 0.00 0.00 4.11
615 616 4.043100 GGTTGCCGGCTTAGGGGT 62.043 66.667 29.70 0.00 0.00 4.95
629 630 2.676471 GGGGCTGCACAATCGGTT 60.676 61.111 3.46 0.00 0.00 4.44
670 671 3.622060 AATCGGTTGGGGCTCACCG 62.622 63.158 18.44 18.44 46.06 4.94
671 672 2.046285 CAATCGGTTGGGGCTCACC 61.046 63.158 0.00 0.00 39.11 4.02
672 673 1.303317 ACAATCGGTTGGGGCTCAC 60.303 57.895 13.99 0.00 39.70 3.51
673 674 1.303236 CACAATCGGTTGGGGCTCA 60.303 57.895 13.99 0.00 39.70 4.26
681 682 0.244450 CCATGCTTGCACAATCGGTT 59.756 50.000 0.00 0.00 0.00 4.44
683 684 0.244450 AACCATGCTTGCACAATCGG 59.756 50.000 0.00 0.00 0.00 4.18
685 686 2.443887 ACAACCATGCTTGCACAATC 57.556 45.000 0.48 0.00 0.00 2.67
686 687 3.765511 AGATACAACCATGCTTGCACAAT 59.234 39.130 0.48 0.00 0.00 2.71
688 689 2.794103 AGATACAACCATGCTTGCACA 58.206 42.857 0.48 0.00 0.00 4.57
689 690 3.855689 AAGATACAACCATGCTTGCAC 57.144 42.857 0.48 0.00 0.00 4.57
690 691 4.949238 ACATAAGATACAACCATGCTTGCA 59.051 37.500 0.48 0.00 0.00 4.08
731 3338 5.411493 TGAGGGCCCATAAATGAGATAGTA 58.589 41.667 27.56 0.00 0.00 1.82
732 3339 4.242811 TGAGGGCCCATAAATGAGATAGT 58.757 43.478 27.56 0.00 0.00 2.12
733 3340 4.916041 TGAGGGCCCATAAATGAGATAG 57.084 45.455 27.56 0.00 0.00 2.08
754 3361 4.115199 GGCCCATGAGTCCGGCTT 62.115 66.667 9.42 0.00 42.58 4.35
833 3445 0.603975 GCCTCTGCCCGGATGTATTC 60.604 60.000 0.73 0.00 0.00 1.75
857 3469 1.021920 TCGGAGAGTGAGAGAGTGCG 61.022 60.000 0.00 0.00 0.00 5.34
858 3470 0.450184 GTCGGAGAGTGAGAGAGTGC 59.550 60.000 0.00 0.00 36.95 4.40
860 3472 0.034863 GGGTCGGAGAGTGAGAGAGT 60.035 60.000 0.00 0.00 36.95 3.24
862 3474 1.208844 AGGGGTCGGAGAGTGAGAGA 61.209 60.000 0.00 0.00 36.95 3.10
1186 4140 3.139077 CAAACCCTAATCCGTAGCCATC 58.861 50.000 0.00 0.00 0.00 3.51
1194 4148 1.396996 CGTTCTGCAAACCCTAATCCG 59.603 52.381 0.00 0.00 0.00 4.18
1266 4222 8.231007 TCCAATAGCCAAAATCCATATCCTTTA 58.769 33.333 0.00 0.00 0.00 1.85
1277 4234 5.921962 AACCTTCTCCAATAGCCAAAATC 57.078 39.130 0.00 0.00 0.00 2.17
1329 4286 4.759516 ACCACATAAACAACCGAATCAC 57.240 40.909 0.00 0.00 0.00 3.06
1352 4312 4.640201 ACACCCATAACAAAATCCGATCAG 59.360 41.667 0.00 0.00 0.00 2.90
1381 4341 3.000925 CAGTTATGTTTCGCCGTGGATAC 59.999 47.826 0.00 0.00 0.00 2.24
1466 4498 1.144913 TCCAAAGGGCTTGTGCTAGTT 59.855 47.619 0.00 0.00 39.59 2.24
1467 4499 0.771127 TCCAAAGGGCTTGTGCTAGT 59.229 50.000 0.00 0.00 39.59 2.57
1516 4549 3.608506 AGATGTATTTCTATAAGCGCGCG 59.391 43.478 28.44 28.44 0.00 6.86
1518 4551 4.201628 GCCAGATGTATTTCTATAAGCGCG 60.202 45.833 0.00 0.00 0.00 6.86
1625 5620 3.883489 ACTTTTCCGGTTTTCCTTGAGAG 59.117 43.478 0.00 0.00 37.95 3.20
1639 5634 8.269424 CGATCAACTCAATTATCTACTTTTCCG 58.731 37.037 0.00 0.00 0.00 4.30
1696 5691 0.249405 ACAATGCCCAGCAACGTTTG 60.249 50.000 0.00 0.00 43.62 2.93
1781 5779 5.163468 TGCACTTGTCCATAAACACAAATGT 60.163 36.000 0.00 0.00 42.46 2.71
1829 5827 6.045106 AGGACCATTCTTTAGACTAAAACCCA 59.955 38.462 8.92 0.00 0.00 4.51
1890 6090 3.366374 GGCAGAAGTAGTGTGGCAAAATC 60.366 47.826 0.00 0.00 44.76 2.17
1928 6149 3.350833 AGGCTAAGAATTTGAGCACCAG 58.649 45.455 8.78 0.00 37.98 4.00
1929 6150 3.244875 TGAGGCTAAGAATTTGAGCACCA 60.245 43.478 8.78 4.15 37.98 4.17
1956 6177 1.824230 TGAAATTCCCTCGGGCAATTG 59.176 47.619 0.00 0.00 34.68 2.32
1957 6178 1.824852 GTGAAATTCCCTCGGGCAATT 59.175 47.619 0.00 2.40 34.68 2.32
2073 6416 3.756434 TGCCAAGTATCAAGTTAGGCAAC 59.244 43.478 0.00 0.00 46.55 4.17
2090 6433 0.975040 ACCTTGCCACACTTTGCCAA 60.975 50.000 0.00 0.00 0.00 4.52
2454 6821 9.547753 CTAGTAAACATCCAAGCATATTAGTGT 57.452 33.333 0.00 0.00 0.00 3.55
2517 6884 3.377172 ACAAGACAACAAGGTTGTAGTGC 59.623 43.478 14.09 3.17 41.31 4.40
2732 7104 2.039818 TCCAAACAAGTTGCGGTACA 57.960 45.000 1.81 0.00 35.74 2.90
2805 7296 1.692519 AGATATAGGCGGTGGTTGTCC 59.307 52.381 0.00 0.00 0.00 4.02
3155 7802 4.101645 TCCATTTAAGTTTGGAACGGGA 57.898 40.909 2.38 0.00 39.05 5.14
3211 7975 2.490148 CGGAGATGCTGCGGGTAGA 61.490 63.158 0.18 0.00 41.42 2.59
3349 8113 0.843309 TGGGTTCAGTGTGTGGATGT 59.157 50.000 0.00 0.00 0.00 3.06
3595 8360 5.516339 CAGGATCACAAAACTGAACAACAAC 59.484 40.000 0.00 0.00 32.86 3.32
3771 12404 9.854668 AATCAGAATCAGAATCAGAATCAGAAT 57.145 29.630 0.00 0.00 0.00 2.40
4003 12775 7.992180 ACAAATGAAATTTTCTGACAGTGAC 57.008 32.000 10.33 0.00 46.10 3.67
4071 12848 6.268158 TCAAACATAAAAGTTTACCCCCTTCC 59.732 38.462 0.00 0.00 39.55 3.46
4414 13211 5.927281 AAGCAGCTCAATGATTACCATTT 57.073 34.783 0.00 0.00 42.55 2.32
4571 13376 8.435931 AATACAGGCAGTGATATATGAGGTTA 57.564 34.615 0.00 0.00 0.00 2.85
4773 13605 1.311859 TGCAAGACACAGAAAGGCAG 58.688 50.000 0.00 0.00 0.00 4.85
4990 13822 9.852091 CGAACTTCAACTACTATTAAGGTTACT 57.148 33.333 0.00 0.00 0.00 2.24
4991 13823 9.080915 CCGAACTTCAACTACTATTAAGGTTAC 57.919 37.037 0.00 0.00 0.00 2.50
4992 13824 8.806146 ACCGAACTTCAACTACTATTAAGGTTA 58.194 33.333 0.00 0.00 0.00 2.85
4993 13825 7.674120 ACCGAACTTCAACTACTATTAAGGTT 58.326 34.615 0.00 0.00 0.00 3.50
4994 13826 7.237209 ACCGAACTTCAACTACTATTAAGGT 57.763 36.000 0.00 0.00 0.00 3.50
4995 13827 8.465201 ACTACCGAACTTCAACTACTATTAAGG 58.535 37.037 0.00 0.00 0.00 2.69
4996 13828 9.852091 AACTACCGAACTTCAACTACTATTAAG 57.148 33.333 0.00 0.00 0.00 1.85
5143 13990 4.160252 GGGAATCAGCTTGCCTATTTTTCA 59.840 41.667 0.00 0.00 41.91 2.69
5465 14363 2.748461 TTTCTTTCACCAACTTCGCG 57.252 45.000 0.00 0.00 0.00 5.87
5540 14442 1.385409 GGCGAAACAATTTAACTGCGC 59.615 47.619 0.00 0.00 42.16 6.09
5663 14565 5.431765 TGAGGGAAATGAGATACAAGAAGC 58.568 41.667 0.00 0.00 0.00 3.86
5709 14612 8.021955 CAATCATGCATATCTGTTACACGTAT 57.978 34.615 0.00 0.00 0.00 3.06
5733 14636 1.675310 CTCAGGCCCAATGTTCGCA 60.675 57.895 0.00 0.00 0.00 5.10
5832 14736 5.989477 TGAGTTCCTGTTCCTGGTAATATG 58.011 41.667 0.00 0.00 0.00 1.78
5965 14869 1.068741 CCCGGATTACCTGTGTAGCTC 59.931 57.143 0.73 0.00 0.00 4.09
6115 15020 4.131649 TCGGTTAACATCCATACACCAG 57.868 45.455 8.10 0.00 0.00 4.00
6244 15158 1.204941 CCACTCTAGCTAAACCTGCGT 59.795 52.381 0.00 0.00 35.28 5.24
6245 15159 1.204941 ACCACTCTAGCTAAACCTGCG 59.795 52.381 0.00 0.00 35.28 5.18
6283 15208 4.037923 ACAATCGGGTATCAATTGGCAATC 59.962 41.667 14.04 0.00 35.24 2.67
6292 15217 1.837439 AGCCAGACAATCGGGTATCAA 59.163 47.619 0.00 0.00 34.05 2.57
6427 15354 9.485206 GCTCTACGAAATATATTACTTCCCAAA 57.515 33.333 0.00 0.00 0.00 3.28
6428 15355 8.867097 AGCTCTACGAAATATATTACTTCCCAA 58.133 33.333 0.00 0.00 0.00 4.12
6429 15356 8.304596 CAGCTCTACGAAATATATTACTTCCCA 58.695 37.037 0.00 0.00 0.00 4.37
6431 15358 9.694137 AACAGCTCTACGAAATATATTACTTCC 57.306 33.333 0.00 0.00 0.00 3.46
6433 15360 9.395707 CGAACAGCTCTACGAAATATATTACTT 57.604 33.333 0.00 0.00 0.00 2.24
6515 15499 3.955650 TCTAGCTAAAACGGCTGAACT 57.044 42.857 0.00 0.00 40.52 3.01
6594 15579 0.975887 TTTTGAATGGAAGCAGCCCC 59.024 50.000 0.00 0.00 0.00 5.80
6651 17360 2.426738 CCGGATCTGCTAGAGATGATCC 59.573 54.545 16.80 16.80 46.81 3.36
6717 17437 2.125512 GGCCTCACAGTACCGCAG 60.126 66.667 0.00 0.00 0.00 5.18
6728 17448 4.039092 GGAGCTTGCAGGGCCTCA 62.039 66.667 0.95 1.69 0.00 3.86
6739 17459 3.761078 AGGAATACCCTGGGAGCTT 57.239 52.632 22.23 9.29 45.61 3.74
6750 17470 5.673337 TGCATCTATCGCAAAAGGAATAC 57.327 39.130 0.00 0.00 36.17 1.89
6794 17514 8.444715 TGATTTGCAAAATGAATTTCATGTAGC 58.555 29.630 17.19 15.15 37.15 3.58
6802 17522 8.907222 ACCTAGTTGATTTGCAAAATGAATTT 57.093 26.923 17.19 0.00 38.44 1.82
6847 17567 8.854833 TGCATCTATCGCAAAAGGAATAACCTC 61.855 40.741 0.00 0.00 41.80 3.85
6848 17568 7.135261 TGCATCTATCGCAAAAGGAATAACCT 61.135 38.462 0.00 0.00 43.44 3.50
6849 17569 5.008613 TGCATCTATCGCAAAAGGAATAACC 59.991 40.000 0.00 0.00 36.17 2.85
6850 17570 6.017934 TCTGCATCTATCGCAAAAGGAATAAC 60.018 38.462 0.00 0.00 39.30 1.89
6851 17571 6.017934 GTCTGCATCTATCGCAAAAGGAATAA 60.018 38.462 0.00 0.00 39.30 1.40
6852 17572 5.466728 GTCTGCATCTATCGCAAAAGGAATA 59.533 40.000 0.00 0.00 39.30 1.75
6853 17573 4.274459 GTCTGCATCTATCGCAAAAGGAAT 59.726 41.667 0.00 0.00 39.30 3.01
6854 17574 3.623060 GTCTGCATCTATCGCAAAAGGAA 59.377 43.478 0.00 0.00 39.30 3.36
6855 17575 3.198068 GTCTGCATCTATCGCAAAAGGA 58.802 45.455 0.00 0.00 39.30 3.36
6856 17576 2.938451 TGTCTGCATCTATCGCAAAAGG 59.062 45.455 0.00 0.00 39.30 3.11
6857 17577 3.620374 ACTGTCTGCATCTATCGCAAAAG 59.380 43.478 0.00 0.00 39.30 2.27
6858 17578 3.599343 ACTGTCTGCATCTATCGCAAAA 58.401 40.909 0.00 0.00 39.30 2.44
6859 17579 3.251479 ACTGTCTGCATCTATCGCAAA 57.749 42.857 0.00 0.00 39.30 3.68
6860 17580 2.967599 ACTGTCTGCATCTATCGCAA 57.032 45.000 0.00 0.00 39.30 4.85
6861 17581 3.569701 TCATACTGTCTGCATCTATCGCA 59.430 43.478 0.00 0.00 37.88 5.10
6862 17582 3.917380 GTCATACTGTCTGCATCTATCGC 59.083 47.826 0.00 0.00 0.00 4.58
6863 17583 5.152804 CAGTCATACTGTCTGCATCTATCG 58.847 45.833 0.00 0.00 41.19 2.92
6877 17597 2.634940 ACAACTCCTGCACAGTCATACT 59.365 45.455 0.00 0.00 0.00 2.12
6878 17598 3.045601 ACAACTCCTGCACAGTCATAC 57.954 47.619 0.00 0.00 0.00 2.39
6879 17599 3.769739 AACAACTCCTGCACAGTCATA 57.230 42.857 0.00 0.00 0.00 2.15
6880 17600 2.620115 CAAACAACTCCTGCACAGTCAT 59.380 45.455 0.00 0.00 0.00 3.06
6881 17601 2.016318 CAAACAACTCCTGCACAGTCA 58.984 47.619 0.00 0.00 0.00 3.41
6882 17602 2.017049 ACAAACAACTCCTGCACAGTC 58.983 47.619 0.00 0.00 0.00 3.51
6883 17603 2.128771 ACAAACAACTCCTGCACAGT 57.871 45.000 0.00 0.00 0.00 3.55
6884 17604 3.508744 AAACAAACAACTCCTGCACAG 57.491 42.857 0.00 0.00 0.00 3.66
6885 17605 3.759086 TGTAAACAAACAACTCCTGCACA 59.241 39.130 0.00 0.00 0.00 4.57
6886 17606 4.364415 TGTAAACAAACAACTCCTGCAC 57.636 40.909 0.00 0.00 0.00 4.57
6887 17607 6.892658 ATATGTAAACAAACAACTCCTGCA 57.107 33.333 0.00 0.00 32.02 4.41
6888 17608 7.145323 ACAATATGTAAACAAACAACTCCTGC 58.855 34.615 0.00 0.00 32.02 4.85
6889 17609 7.807907 GGACAATATGTAAACAAACAACTCCTG 59.192 37.037 0.00 0.00 32.02 3.86
6890 17610 7.504238 TGGACAATATGTAAACAAACAACTCCT 59.496 33.333 0.00 0.00 32.02 3.69
6891 17611 7.653647 TGGACAATATGTAAACAAACAACTCC 58.346 34.615 0.00 0.00 32.02 3.85
6892 17612 9.522804 TTTGGACAATATGTAAACAAACAACTC 57.477 29.630 0.00 0.00 29.69 3.01
6893 17613 9.528018 CTTTGGACAATATGTAAACAAACAACT 57.472 29.630 0.00 0.00 30.74 3.16
6894 17614 8.760569 CCTTTGGACAATATGTAAACAAACAAC 58.239 33.333 0.00 0.00 30.74 3.32
6895 17615 8.696374 TCCTTTGGACAATATGTAAACAAACAA 58.304 29.630 0.00 0.00 30.74 2.83
6896 17616 8.239038 TCCTTTGGACAATATGTAAACAAACA 57.761 30.769 0.00 0.00 30.74 2.83
6897 17617 9.191995 CTTCCTTTGGACAATATGTAAACAAAC 57.808 33.333 0.00 0.00 30.74 2.93
6898 17618 7.870445 GCTTCCTTTGGACAATATGTAAACAAA 59.130 33.333 0.00 0.00 32.04 2.83
6899 17619 7.014711 TGCTTCCTTTGGACAATATGTAAACAA 59.985 33.333 0.00 0.00 0.00 2.83
6900 17620 6.491745 TGCTTCCTTTGGACAATATGTAAACA 59.508 34.615 0.00 0.00 0.00 2.83
6901 17621 6.919721 TGCTTCCTTTGGACAATATGTAAAC 58.080 36.000 0.00 0.00 0.00 2.01
6902 17622 7.531857 TTGCTTCCTTTGGACAATATGTAAA 57.468 32.000 0.00 0.00 0.00 2.01
6903 17623 7.531857 TTTGCTTCCTTTGGACAATATGTAA 57.468 32.000 0.00 0.00 0.00 2.41
6904 17624 7.415095 CGATTTGCTTCCTTTGGACAATATGTA 60.415 37.037 0.00 0.00 0.00 2.29
6905 17625 6.610075 ATTTGCTTCCTTTGGACAATATGT 57.390 33.333 0.00 0.00 0.00 2.29
6906 17626 5.745294 CGATTTGCTTCCTTTGGACAATATG 59.255 40.000 0.00 0.00 0.00 1.78
6907 17627 5.163519 CCGATTTGCTTCCTTTGGACAATAT 60.164 40.000 0.00 0.00 0.00 1.28
6908 17628 4.157656 CCGATTTGCTTCCTTTGGACAATA 59.842 41.667 0.00 0.00 0.00 1.90
6909 17629 3.056607 CCGATTTGCTTCCTTTGGACAAT 60.057 43.478 0.00 0.00 0.00 2.71
6910 17630 2.295909 CCGATTTGCTTCCTTTGGACAA 59.704 45.455 0.00 0.00 0.00 3.18
6911 17631 1.885887 CCGATTTGCTTCCTTTGGACA 59.114 47.619 0.00 0.00 0.00 4.02
6912 17632 1.202348 CCCGATTTGCTTCCTTTGGAC 59.798 52.381 0.00 0.00 0.00 4.02
6913 17633 1.203001 ACCCGATTTGCTTCCTTTGGA 60.203 47.619 0.00 0.00 0.00 3.53
6914 17634 1.067635 CACCCGATTTGCTTCCTTTGG 60.068 52.381 0.00 0.00 0.00 3.28
6915 17635 1.067635 CCACCCGATTTGCTTCCTTTG 60.068 52.381 0.00 0.00 0.00 2.77
6916 17636 1.256812 CCACCCGATTTGCTTCCTTT 58.743 50.000 0.00 0.00 0.00 3.11
6917 17637 1.250840 GCCACCCGATTTGCTTCCTT 61.251 55.000 0.00 0.00 0.00 3.36
6918 17638 1.678970 GCCACCCGATTTGCTTCCT 60.679 57.895 0.00 0.00 0.00 3.36
6919 17639 2.885113 GCCACCCGATTTGCTTCC 59.115 61.111 0.00 0.00 0.00 3.46
6920 17640 2.485122 CGCCACCCGATTTGCTTC 59.515 61.111 0.00 0.00 40.02 3.86
6921 17641 3.747976 GCGCCACCCGATTTGCTT 61.748 61.111 0.00 0.00 40.02 3.91
6922 17642 2.884997 TATGCGCCACCCGATTTGCT 62.885 55.000 4.18 0.00 40.02 3.91
6923 17643 2.477176 TATGCGCCACCCGATTTGC 61.477 57.895 4.18 0.00 40.02 3.68
6924 17644 1.355210 GTATGCGCCACCCGATTTG 59.645 57.895 4.18 0.00 40.02 2.32
6925 17645 0.465460 ATGTATGCGCCACCCGATTT 60.465 50.000 4.18 0.00 40.02 2.17
6926 17646 0.465460 AATGTATGCGCCACCCGATT 60.465 50.000 4.18 0.00 40.02 3.34
6927 17647 0.465460 AAATGTATGCGCCACCCGAT 60.465 50.000 4.18 0.00 40.02 4.18
6928 17648 1.078072 AAATGTATGCGCCACCCGA 60.078 52.632 4.18 0.00 40.02 5.14
6929 17649 1.063972 CAAATGTATGCGCCACCCG 59.936 57.895 4.18 0.00 40.75 5.28
6930 17650 1.226945 GCAAATGTATGCGCCACCC 60.227 57.895 4.18 0.00 36.45 4.61
6931 17651 4.400410 GCAAATGTATGCGCCACC 57.600 55.556 4.18 0.00 36.45 4.61
6937 17657 4.062677 ACATTCATGGGCAAATGTATGC 57.937 40.909 14.64 0.00 42.67 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.